sbuild (Debian sbuild) 0.91.10 (27 June 2026) on carme.larted.org.uk +==============================================================================+ | openbabel 3.1.1+dfsg-14 (amd64) Mon, 07 Sep 2026 22:55:02 +0000 | +==============================================================================+ Package: openbabel Version: 3.1.1+dfsg-14 Source Version: 3.1.1+dfsg-14 Distribution: sid Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Mon, 07 Sep 2026 22:55:03 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup openbabel_3.1.1+dfsg-14 sid amd64 -------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup openbabel_3.1.1+dfsg-14 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Mon, 07 Sep 2026 22:55:03 +0000 | +------------------------------------------------------------------------------+ Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://deb.debian.org/debian sid InRelease [193 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-09-07-2000.56-F-2026-09-07-2000.56.pdiff [20.5 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-09-07-2000.56-F-2026-09-07-2000.56.pdiff [20.5 kB] Get:6 http://deb.debian.org/debian sid/main Sources T-2026-09-07-2000.56-F-2026-09-07-2000.56.pdiff [20.0 kB] Get:6 http://deb.debian.org/debian sid/main Sources T-2026-09-07-2000.56-F-2026-09-07-2000.56.pdiff [20.0 kB] Fetched 553 kB in 6s (90.4 kB/s) Reading package lists... 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Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Mon, 07 Sep 2026 22:55:11 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/openbabel_3.1.1+dfsg-14.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 07 Sep 2026 22:55:11 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: cmake, debhelper-compat (= 13), dh-python, doxygen, ghostscript, graphviz, libboost-all-dev, libcairo2-dev, libcoordgen-dev, libeigen3-dev, libinchi-dev, libmaeparser-dev, libperl-dev, libwxgtk3.2-dev, libxml2-dev, pkgconf, python3-all, python3-dev, python3-setuptools, rapidjson-dev, swig, texlive-binaries, texlive-latex-base, texlive-latex-extra, zlib1g-dev, build-essential Filtered Build-Depends: cmake, debhelper-compat (= 13), dh-python, doxygen, ghostscript, graphviz, libboost-all-dev, libcairo2-dev, libcoordgen-dev, libeigen3-dev, libinchi-dev, libmaeparser-dev, libperl-dev, libwxgtk3.2-dev, libxml2-dev, pkgconf, python3-all, python3-dev, python3-setuptools, rapidjson-dev, swig, texlive-binaries, texlive-latex-base, texlive-latex-extra, zlib1g-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/openbabel-7yTj35/resolver-JqBoLb/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/openbabel-7yTj35/resolver-JqBoLb/apt_archive ./ InRelease Get:2 copy:/build/openbabel-7yTj35/resolver-JqBoLb/apt_archive ./ Release [609 B] Ign:3 copy:/build/openbabel-7yTj35/resolver-JqBoLb/apt_archive ./ Release.gpg Get:4 copy:/build/openbabel-7yTj35/resolver-JqBoLb/apt_archive ./ Sources [937 B] Get:5 copy:/build/openbabel-7yTj35/resolver-JqBoLb/apt_archive ./ Packages [977 B] Fetched 2523 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev bsdextrautils bubblewrap cmake dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service debhelper dh-autoreconf dh-python dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-font-awesome fonts-font-awesome-legacy fonts-lato fonts-lmodern fonts-urw-base35 gettext gettext-base gfortran-16 gfortran-16-x86-64-linux-gnu ghostscript girepository-tools glycin-loaders glycin-thumbnailers graphviz groff-base gtk-update-icon-cache hicolor-icon-theme ibverbs-providers intltool-debian libabsl20260526 libamd-comgr3 libamdhip64-6 libaom3 libapache-pom-java libapparmor1 libarchive-zip-perl libarchive13t64 libasound2-data libasound2t64 libasyncns0 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libblkid-dev libboost-all-dev libboost-atomic-dev libboost-atomic1.90-dev libboost-atomic1.90.0 libboost-charconv1.90-dev libboost-charconv1.90.0 libboost-chrono-dev libboost-chrono1.90-dev libboost-chrono1.90.0 libboost-container-dev libboost-container1.90-dev libboost-container1.90.0 libboost-context-dev libboost-context1.90-dev libboost-context1.90.0 libboost-coroutine-dev libboost-coroutine1.90-dev libboost-coroutine1.90.0 libboost-date-time-dev libboost-date-time1.90-dev libboost-date-time1.90.0 libboost-dev libboost-exception-dev libboost-exception1.90-dev libboost-fiber-dev libboost-fiber1.90-dev libboost-fiber1.90.0 libboost-filesystem-dev libboost-filesystem1.90-dev libboost-filesystem1.90.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.90-dev libboost-graph-parallel1.90.0 libboost-graph1.90-dev libboost-graph1.90.0 libboost-iostreams-dev libboost-iostreams1.90-dev libboost-iostreams1.90.0 libboost-json-dev libboost-json1.90-dev libboost-json1.90.0 libboost-locale-dev libboost-locale1.90-dev libboost-locale1.90.0 libboost-log-dev libboost-log1.90-dev libboost-log1.90.0 libboost-math-dev libboost-math1.90-dev libboost-math1.90.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.90-dev libboost-mpi-python1.90.0 libboost-mpi1.90-dev libboost-mpi1.90.0 libboost-nowide-dev libboost-nowide1.90-dev libboost-nowide1.90.0 libboost-numpy-dev libboost-numpy1.90-dev libboost-numpy1.90.0 libboost-process-dev libboost-process1.90-dev libboost-process1.90.0 libboost-program-options-dev libboost-program-options1.90-dev libboost-program-options1.90.0 libboost-python-dev libboost-python1.90-dev libboost-python1.90.0 libboost-random-dev libboost-random1.90-dev libboost-random1.90.0 libboost-regex-dev libboost-regex1.90-dev libboost-regex1.90.0 libboost-serialization-dev libboost-serialization1.90-dev libboost-serialization1.90.0 libboost-stacktrace-dev libboost-stacktrace1.90-dev libboost-stacktrace1.90.0 libboost-test-dev libboost-test1.90-dev libboost-test1.90.0 libboost-thread-dev libboost-thread1.90-dev libboost-thread1.90.0 libboost-timer-dev libboost-timer1.90-dev libboost-timer1.90.0 libboost-tools-dev libboost-type-erasure-dev libboost-type-erasure1.90-dev libboost-type-erasure1.90.0 libboost-url-dev libboost-url1.90-dev libboost-url1.90.0 libboost-wave-dev libboost-wave1.90-dev libboost-wave1.90.0 libboost1.90-dev libboost1.90-tools-dev libbrotli-dev libbrotli1 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcbor0.10 libcdt6 libcgraph8 libclang-common-21-dev libclang-cpp21 libclang1-21 libcloudproviders0 libcolord2 libcom-err2 libcommons-logging-java libcommons-parent-java libcoordgen-dev libcoordgen3 libcrypt-dev libcups2t64 libcurl4t64 libdatrie1 libdav1d7 libdbus-1-3 libdconf1 libde265-0 libdebhelper-perl libdecor-0-0 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libeigen3-dev libelf1t64 libepoxy0 libesmtp6 libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libffi-dev libfido2-1 libfile-stripnondeterminism-perl libflac14 libfmt10 libfontbox-java libfontconfig-dev libfontconfig1 libfontenc1 libfreetype-dev libfreetype6 libfribidi0 libfuse3-4 libgav1-2 libgbm1 libgd3 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-16-dev libgfortran5 libgio-2.0-dev libgio-2.0-dev-bin libgirepository-2.0-0 libgl-dev libgl1 libgl1-mesa-dri libglib2.0-0t64 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libglycin-2-0 libgraphite2-3 libgs-common libgs10 libgs10-common libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz-subset0 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhsa-runtime64-1 libhwloc-dev libhwloc-plugins libhwloc15 libhwy1t64 libibmad5 libibumad3 libibverbs-dev libibverbs1 libice-dev libice6 libicu78 libidn12 libijs-0.35 libimagequant0 libinchi-dev libinchi1.07 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjsoncpp26 libjxl0.11 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 liblerc4 libllvm21 libltdl-dev libltdl7 liblzma-dev liblzo2-2 libmaeparser-dev libmaeparser1 libmagic-mgc libmagic1t64 libmount-dev libmp3lame0 libmpfi0 libmpg123-0t64 libmunge2 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnotify4 libnuma-dev libnuma1 libogg0 libopengl-dev libopengl0 libopenjp2-7 libopenmpi-dev libopenmpi40 libopus0 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpdfbox-java libperl-dev libpipeline1 libpixman-1-0 libpixman-1-dev libpkgconf7 libpmix2t64 libpng-dev libpng16-16t64 libpotrace0 libproc2-1 libprrte-bin libprrte-dev libprrte4 libpsl5t64 libpsm2-2 libptexenc1 libpulse0 libpython3-dev libpython3-stdlib libpython3.14 libpython3.14-dev libpython3.14-minimal libpython3.14-stdlib librav1e0.8 librdmacm1t64 librhash1 librsvg2-2 libsdl2-2.0-0 libsdl3-0 libselinux-dev libsensors-config libsensors5 libsepol-dev libsharpyuv0 libsm-dev libsm6 libsndfile1 libspdlog1.15 libssh2-1t64 libsvtav1enc4 libsynctex2 libsysprof-capture-4-dev libsystemd-shared libteckit0 libtexlua53-5 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtool libucc1 libuchardet0 libucx0 libuv1t64 libvorbis0a libvorbisenc2 libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libwxgtk3.2-dev libx11-6 libx11-data libx11-dev libx11-xcb1 libxapian30 libxau-dev libxau6 libxaw7 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxext-dev libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml2-16 libxml2-dev libxmu6 libxnvctrl0 libxpm4 libxrandr2 libxrender-dev libxrender1 libxres1 libxshmfence1 libxss1 libxt6t64 libxtst6 libxxf86vm1 libyuv0 libz3-4 libze1 libzzip-0-13t64 m4 man-db media-types mesa-libgallium mpi-default-bin mpi-default-dev native-architecture netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids pkgconf pkgconf-bin po-debconf poppler-data preview-latex-style procps prrte-common python3 python3-all python3-autocommand python3-dev python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-minimal python3-more-itertools python3-packaging python3-pkg-resources python3-setuptools python3-typeguard python3-typing-extensions python3-zipp python3.14 python3.14-dev python3.14-minimal rapidjson-dev sensible-utils shared-mime-info swig systemd systemd-sysv t1utils tex-common texlive-base texlive-binaries texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tzdata ucf uuid-dev wx-common wx3.2-headers x11-common x11proto-dev xdg-utils xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: adwaita-icon-theme-legacy autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make flit python3-build python3-installer python3-wheel doxygen-latex doxygen-doc doxygen-gui node-fortawesome-fontawesome-free fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n gfortran-16-multilib gfortran-16-doc libcoarrays-dev libheif-plugin-x265 | libheif-plugin-kvazaar gsfonts graphviz-doc groff lrzip alsa-utils libasound2-plugins libboost-doc libboost1.90-doc libboost-contract1.90-dev libmpfrc++-dev libntl-dev xsltproc docbook-xml docbook-xsl default-jdk fop libcairo2-doc colord libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java cups-common libeigen3-doc freetype2-doc fuse3 libgd-tools gir1.2-glib-2.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin libxml2-utils low-memory-monitor krb5-doc krb5-user gvfs libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libhwloc-contrib-plugins libice-doc libjs-jquery-ui-docs liblcms2-utils libtool-doc liblzma-doc libmpfi-doc notification-daemon openmpi-doc opus-tools pulseaudio librsvg2-bin libayatana-appindicator3-1 | libappindicator3-1 libgles1 libgles2 libpipewire-0.3-0t64 libsndio7.0 liburing2 lm-sensors libsm-doc libbpf1 libcryptsetup12 libdw1t64 libfdisk1 libkmod2 libmicrohttpd12t64 libpwquality1 libqrencode4 libtss2-esys-3.0.2-0t64 wx3.2-doc libx11-doc xapian-tools libxcb-doc libxext-doc m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-tk python3-venv python-setuptools-doc python-typing-extensions-doc python3.14-venv python3.14-doc binfmt-support rapidjson-doc swig-doc swig-examples systemd-container systemd-homed systemd-imds systemd-userdbd systemd-boot systemd-report systemd-resolved systemd-repart polkitd perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex Recommended packages: librsvg2-common curl | wget | lynx libheif-plugin-aomenc | libheif-plugin-rav1e | libheif-plugin-svtenc fonts-liberation alsa-ucm-conf alsa-topology-conf at-spi2-core bzip2-doc libclang-rt-21-dev ca-certificates default-libdecor-0-plugin-1 | libdecor-0-plugin-1 libarchive-cpio-perl xdg-user-dirs fonts-droid-fallback ibus-gtk3 libgtk-3-bin libheif-plugin-x265 libheif-plugin-aomenc javascript-common krb5-locales libcoarrays-openmpi-dev libpng-tools libpmix-dev publicsuffix libegl1 mesa-vulkan-drivers | vulkan-icd xauth libmail-sendmail-perl psmisc linux-sysctl-defaults systemd-timesyncd | time-daemon systemd-tpm systemd-cryptsetup libbpf1 libcryptsetup12 libkmod2 libnss-systemd lmodern dvisvgm default-jre libspreadsheet-parseexcel-perl texlive-fonts-recommended texlive-plain-generic ruby tk zip libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev bsdextrautils bubblewrap cmake dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service debhelper dh-autoreconf dh-python dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-font-awesome fonts-font-awesome-legacy fonts-lato fonts-lmodern fonts-urw-base35 gettext gettext-base gfortran-16 gfortran-16-x86-64-linux-gnu ghostscript girepository-tools glycin-loaders glycin-thumbnailers graphviz groff-base gtk-update-icon-cache hicolor-icon-theme ibverbs-providers intltool-debian libabsl20260526 libamd-comgr3 libamdhip64-6 libaom3 libapache-pom-java libapparmor1 libarchive-zip-perl libarchive13t64 libasound2-data libasound2t64 libasyncns0 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libblkid-dev libboost-all-dev libboost-atomic-dev libboost-atomic1.90-dev libboost-atomic1.90.0 libboost-charconv1.90-dev libboost-charconv1.90.0 libboost-chrono-dev libboost-chrono1.90-dev libboost-chrono1.90.0 libboost-container-dev libboost-container1.90-dev libboost-container1.90.0 libboost-context-dev libboost-context1.90-dev libboost-context1.90.0 libboost-coroutine-dev libboost-coroutine1.90-dev libboost-coroutine1.90.0 libboost-date-time-dev libboost-date-time1.90-dev libboost-date-time1.90.0 libboost-dev libboost-exception-dev libboost-exception1.90-dev libboost-fiber-dev libboost-fiber1.90-dev libboost-fiber1.90.0 libboost-filesystem-dev libboost-filesystem1.90-dev libboost-filesystem1.90.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.90-dev libboost-graph-parallel1.90.0 libboost-graph1.90-dev libboost-graph1.90.0 libboost-iostreams-dev libboost-iostreams1.90-dev libboost-iostreams1.90.0 libboost-json-dev libboost-json1.90-dev libboost-json1.90.0 libboost-locale-dev libboost-locale1.90-dev libboost-locale1.90.0 libboost-log-dev libboost-log1.90-dev libboost-log1.90.0 libboost-math-dev libboost-math1.90-dev libboost-math1.90.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.90-dev libboost-mpi-python1.90.0 libboost-mpi1.90-dev libboost-mpi1.90.0 libboost-nowide-dev libboost-nowide1.90-dev libboost-nowide1.90.0 libboost-numpy-dev libboost-numpy1.90-dev libboost-numpy1.90.0 libboost-process-dev libboost-process1.90-dev libboost-process1.90.0 libboost-program-options-dev libboost-program-options1.90-dev libboost-program-options1.90.0 libboost-python-dev libboost-python1.90-dev libboost-python1.90.0 libboost-random-dev libboost-random1.90-dev libboost-random1.90.0 libboost-regex-dev libboost-regex1.90-dev libboost-regex1.90.0 libboost-serialization-dev libboost-serialization1.90-dev libboost-serialization1.90.0 libboost-stacktrace-dev libboost-stacktrace1.90-dev libboost-stacktrace1.90.0 libboost-test-dev libboost-test1.90-dev libboost-test1.90.0 libboost-thread-dev libboost-thread1.90-dev libboost-thread1.90.0 libboost-timer-dev libboost-timer1.90-dev libboost-timer1.90.0 libboost-tools-dev libboost-type-erasure-dev libboost-type-erasure1.90-dev libboost-type-erasure1.90.0 libboost-url-dev libboost-url1.90-dev libboost-url1.90.0 libboost-wave-dev libboost-wave1.90-dev libboost-wave1.90.0 libboost1.90-dev libboost1.90-tools-dev libbrotli-dev libbrotli1 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcbor0.10 libcdt6 libcgraph8 libclang-common-21-dev libclang-cpp21 libclang1-21 libcloudproviders0 libcolord2 libcom-err2 libcommons-logging-java libcommons-parent-java libcoordgen-dev libcoordgen3 libcrypt-dev libcups2t64 libcurl4t64 libdatrie1 libdav1d7 libdbus-1-3 libdconf1 libde265-0 libdebhelper-perl libdecor-0-0 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libeigen3-dev libelf1t64 libepoxy0 libesmtp6 libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libffi-dev libfido2-1 libfile-stripnondeterminism-perl libflac14 libfmt10 libfontbox-java libfontconfig-dev libfontconfig1 libfontenc1 libfreetype-dev libfreetype6 libfribidi0 libfuse3-4 libgav1-2 libgbm1 libgd3 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-16-dev libgfortran5 libgio-2.0-dev libgio-2.0-dev-bin libgirepository-2.0-0 libgl-dev libgl1 libgl1-mesa-dri libglib2.0-0t64 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libglycin-2-0 libgraphite2-3 libgs-common libgs10 libgs10-common libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz-subset0 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhsa-runtime64-1 libhwloc-dev libhwloc-plugins libhwloc15 libhwy1t64 libibmad5 libibumad3 libibverbs-dev libibverbs1 libice-dev libice6 libicu78 libidn12 libijs-0.35 libimagequant0 libinchi-dev libinchi1.07 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjsoncpp26 libjxl0.11 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 liblerc4 libllvm21 libltdl-dev libltdl7 liblzma-dev liblzo2-2 libmaeparser-dev libmaeparser1 libmagic-mgc libmagic1t64 libmount-dev libmp3lame0 libmpfi0 libmpg123-0t64 libmunge2 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnotify4 libnuma-dev libnuma1 libogg0 libopengl-dev libopengl0 libopenjp2-7 libopenmpi-dev libopenmpi40 libopus0 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpdfbox-java libperl-dev libpipeline1 libpixman-1-0 libpixman-1-dev libpkgconf7 libpmix2t64 libpng-dev libpng16-16t64 libpotrace0 libproc2-1 libprrte-bin libprrte-dev libprrte4 libpsl5t64 libpsm2-2 libptexenc1 libpulse0 libpython3-dev libpython3-stdlib libpython3.14 libpython3.14-dev libpython3.14-minimal libpython3.14-stdlib librav1e0.8 librdmacm1t64 librhash1 librsvg2-2 libsdl2-2.0-0 libsdl3-0 libselinux-dev libsensors-config libsensors5 libsepol-dev libsharpyuv0 libsm-dev libsm6 libsndfile1 libspdlog1.15 libssh2-1t64 libsvtav1enc4 libsynctex2 libsysprof-capture-4-dev libsystemd-shared libteckit0 libtexlua53-5 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtool libucc1 libuchardet0 libucx0 libuv1t64 libvorbis0a libvorbisenc2 libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libwxgtk3.2-dev libx11-6 libx11-data libx11-dev libx11-xcb1 libxapian30 libxau-dev libxau6 libxaw7 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxext-dev libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml2-16 libxml2-dev libxmu6 libxnvctrl0 libxpm4 libxrandr2 libxrender-dev libxrender1 libxres1 libxshmfence1 libxss1 libxt6t64 libxtst6 libxxf86vm1 libyuv0 libz3-4 libze1 libzzip-0-13t64 m4 man-db media-types mesa-libgallium mpi-default-bin mpi-default-dev native-architecture netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids pkgconf pkgconf-bin po-debconf poppler-data preview-latex-style procps prrte-common python3 python3-all python3-autocommand python3-dev python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-minimal python3-more-itertools python3-packaging python3-pkg-resources python3-setuptools python3-typeguard python3-typing-extensions python3-zipp python3.14 python3.14-dev python3.14-minimal rapidjson-dev sbuild-build-depends-main-dummy sensible-utils shared-mime-info swig systemd systemd-sysv t1utils tex-common texlive-base texlive-binaries texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tzdata ucf uuid-dev wx-common wx3.2-headers x11-common x11proto-dev xdg-utils xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 534 newly installed, 0 to remove and 0 not upgraded. Need to get 509 MB of archives. After this operation, 2162 MB of additional disk space will be used. Get:1 copy:/build/openbabel-7yTj35/resolver-JqBoLb/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1020 B] Get:2 http://deb.debian.org/debian unstable/main amd64 libsystemd-shared amd64 262~rc1-2 [2784 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 systemd amd64 262~rc1-2 [3474 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 systemd-sysv amd64 262~rc1-2 [41.4 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.8.4-1 [130 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libpython3.14-minimal amd64 3.14.7-3 [902 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 python3.14-minimal amd64 3.14.7-3 [2712 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 netbase all 6.6 [10.3 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026c-1 [260 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libpython3.14-stdlib amd64 3.14.7-3 [2360 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 python3.14 amd64 3.14.7-3 [861 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:17 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-5+b1 [176 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dbus-bin amd64 1.16.2-5+b1 [76.7 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 dbus-session-bus-common all 1.16.2-5 [48.7 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libapparmor1 amd64 4.1.8-2 [38.7 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 dbus-daemon amd64 1.16.2-5+b1 [156 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 dbus-system-bus-common all 1.16.2-5 [49.6 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 dbus amd64 1.16.2-5+b1 [68.2 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-3 [332 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libpam-systemd amd64 262~rc1-2 [345 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.3-1 [102 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2.2 [29.0 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.17.0-2 [80.5 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 openssh-common amd64 1:10.5p1-1 [499 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:10.5p1-1 [734 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:44 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:45 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0056 [47.1 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 bubblewrap amd64 0.12.0-1 [54.2 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.14.3+dfsg-2 [492 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b3 [23.4 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-9 [10.8 MB] Get:55 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:64 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unstable/main amd64 libheif1 amd64 1.23.3-1 [857 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libhwy1t64 amd64 1.3.0-5.1 [694 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.19.1-1 [164 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libjxl0.11 amd64 0.11.2-5.1 [1273 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libcairo-gobject2 amd64 1.18.4-3+b1 [129 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.58.0-1 [225 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.58.0-1 [53.1 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.58.0-1 [34.2 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 librsvg2-2 amd64 2.62.1+dfsg-1 [1828 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 glycin-loaders amd64 2.1.5+ds-2 [2733 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libglycin-2-0 amd64 2.1.5+ds-2 [1393 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 glycin-thumbnailers amd64 2.1.5+ds-2 [215 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf2.0-common all 2.44.7+dfsg-1 [316 kB] Get:95 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amd64 autopoint all 1.0-3 [820 kB] Get:106 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.8.9-1 [364 kB] Get:107 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:108 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:109 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:110 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1+b1 [19.5 kB] Get:111 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:112 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:113 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:114 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:115 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:116 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dconf-service amd64 0.49.0-4+b1 [32.6 kB] Get:127 http://deb.debian.org/debian unstable/main amd64 dconf-gsettings-backend amd64 0.49.0-4+b1 [28.7 kB] Get:128 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:129 http://deb.debian.org/debian unstable/main amd64 libtool all 2.6.2-2 [553 kB] Get:130 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:131 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:132 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:133 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:134 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:135 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:136 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-3 [2658 kB] Get:137 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:138 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:139 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.3 [934 kB] Get:140 http://deb.debian.org/debian unstable/main amd64 dh-python all 7.20260623 [114 kB] Get:141 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1.1 [8644 kB] Get:142 http://deb.debian.org/debian unstable/main amd64 libllvm21 amd64 1:21.1.8-10 [28.2 MB] Get:143 http://deb.debian.org/debian unstable/main amd64 libclang-cpp21 amd64 1:21.1.8-10 [12.8 MB] Get:144 http://deb.debian.org/debian unstable/main amd64 libclang1-21 amd64 1:21.1.8-10 [7701 kB] Get:145 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4+b2 [126 kB] Get:146 http://deb.debian.org/debian unstable/main amd64 libspdlog1.15 amd64 1:1.15.3+ds-1+b2 [107 kB] Get:147 http://deb.debian.org/debian unstable/main amd64 libxapian30 amd64 1.4.32-1 [1417 kB] Get:148 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.15.0+ds1-1.1 [5544 kB] Get:149 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome-legacy all 6-3 [1547 kB] Get:150 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 7.3.0+dfsg-1 [677 kB] Get:151 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-2 [4533 kB] Get:152 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.2.0-2 [878 kB] Get:153 http://deb.debian.org/debian unstable/main amd64 libgfortran-16-dev amd64 16.2.0-2 [921 kB] Get:154 http://deb.debian.org/debian unstable/main amd64 gfortran-16-x86-64-linux-gnu amd64 16.2.0-2 [78.6 MB] Get:155 http://deb.debian.org/debian unstable/main amd64 gfortran-16 amd64 16.2.0-2 [16.4 kB] Get:156 http://deb.debian.org/debian unstable/main amd64 libgs-common all 10.07.1~dfsg-1 [143 kB] Get:157 http://deb.debian.org/debian unstable/main amd64 libgs10-common all 10.07.1~dfsg-1 [473 kB] Get:158 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-18 [113 kB] Get:159 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-18 [45.2 kB] Get:160 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-18 [49.2 kB] Get:161 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.18-1 [252 kB] Get:162 http://deb.debian.org/debian unstable/main amd64 libidn12 amd64 1.44-1 [47.5 kB] Get:163 http://deb.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-16+b2 [15.0 kB] Get:164 http://deb.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b4 [65.3 kB] Get:165 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:166 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.4-1.1 [205 kB] Get:167 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:168 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:169 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:170 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:171 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1+b2 [335 kB] Get:172 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:173 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:174 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:175 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:176 http://deb.debian.org/debian unstable/main amd64 libgs10 amd64 10.07.1~dfsg-1 [2915 kB] Get:177 http://deb.debian.org/debian unstable/main amd64 ghostscript amd64 10.07.1~dfsg-1 [44.8 kB] Get:178 http://deb.debian.org/debian unstable/main amd64 native-architecture all 0.2.6 [2264 B] Get:179 http://deb.debian.org/debian unstable/main amd64 libgirepository-2.0-0 amd64 2.89.4-2+b1 [131 kB] Get:180 http://deb.debian.org/debian unstable/main amd64 girepository-tools amd64 2.89.4-2+b1 [138 kB] Get:181 http://deb.debian.org/debian unstable/main amd64 libcdt6 amd64 14.1.2-1+b3 [18.3 kB] Get:182 http://deb.debian.org/debian unstable/main amd64 libcgraph8 amd64 14.1.2-1+b3 [58.5 kB] Get:183 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.6.2-2 [427 kB] Get:184 http://deb.debian.org/debian unstable/main amd64 libpathplan4 amd64 14.1.2-1+b3 [29.6 kB] Get:185 http://deb.debian.org/debian unstable/main amd64 libxdot4 amd64 14.1.2-1+b3 [21.6 kB] Get:186 http://deb.debian.org/debian unstable/main amd64 libgvc7 amd64 14.1.2-1+b3 [375 kB] Get:187 http://deb.debian.org/debian unstable/main amd64 libgvpr2 amd64 14.1.2-1+b3 [126 kB] Get:188 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.14.1-1 [1923 kB] Get:189 http://deb.debian.org/debian unstable/main amd64 libabsl20260526 amd64 20260526.0-2 [563 kB] Get:190 http://deb.debian.org/debian unstable/main amd64 libgav1-2 amd64 0.20.0-2+b2 [372 kB] Get:191 http://deb.debian.org/debian unstable/main amd64 librav1e0.8 amd64 0.8.1-11 [966 kB] Get:192 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc4 amd64 4.1.0+dfsg-1 [2414 kB] Get:193 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1971.20260904-1 [187 kB] Get:194 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.4.2-1 [147 kB] Get:195 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.1-1+b2 [255 kB] Get:196 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.19-1 [58.9 kB] Get:197 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-14 [126 kB] Get:198 http://deb.debian.org/debian unstable/main amd64 libgvplugin-gd8 amd64 14.1.2-1+b3 [27.0 kB] Get:199 http://deb.debian.org/debian unstable/main amd64 libgvplugin-pango8 amd64 14.1.2-1+b3 [31.1 kB] Get:200 http://deb.debian.org/debian unstable/main amd64 graphviz amd64 14.1.2-1+b3 [60.3 kB] Get:201 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.12.0-2+b1 [62.2 kB] Get:202 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.12.0-2+b1 [200 kB] Get:203 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 64.0-1 [66.5 kB] Get:204 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 64.0-1 [418 kB] Get:205 http://deb.debian.org/debian unstable/main amd64 libclang-common-21-dev amd64 1:21.1.8-10 [768 kB] Get:206 http://deb.debian.org/debian unstable/main amd64 libamd-comgr3 amd64 7.0.2+dfsg-3 [13.9 MB] Get:207 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.134-3 [7860 B] Get:208 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.134-3 [38.5 kB] Get:209 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.134-3 [23.3 kB] Get:210 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.19-1+b2 [22.0 kB] Get:211 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.4.3+dfsg-5 [678 kB] Get:212 http://deb.debian.org/debian unstable/main amd64 libamdhip64-6 amd64 6.4.3-5 [9385 kB] Get:213 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 33-2 [5852 B] Get:214 http://deb.debian.org/debian unstable/main amd64 libasound2-data all 1.2.16.1-1 [19.4 kB] Get:215 http://deb.debian.org/debian unstable/main amd64 libasound2t64 amd64 1.2.16.1-1 [397 kB] Get:216 http://deb.debian.org/debian unstable/main amd64 libasyncns0 amd64 0.8-8 [12.4 kB] Get:217 http://deb.debian.org/debian unstable/main amd64 libatk1.0-0t64 amd64 2.61.90-1 [51.6 kB] Get:218 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.3-1 [86.4 kB] Get:219 http://deb.debian.org/debian unstable/main amd64 libxres1 amd64 2:1.2.1-2 [17.9 kB] Get:220 http://deb.debian.org/debian unstable/main amd64 libatspi2.0-0t64 amd64 2.61.90-1 [86.7 kB] Get:221 http://deb.debian.org/debian unstable/main amd64 libatk-bridge2.0-0t64 amd64 2.61.90-1 [68.9 kB] Get:222 http://deb.debian.org/debian unstable/main amd64 uuid-dev amd64 2.42.3-1 [46.0 kB] Get:223 http://deb.debian.org/debian unstable/main amd64 libblkid-dev amd64 2.42.3-1 [224 kB] Get:224 http://deb.debian.org/debian unstable/main amd64 libboost1.90-dev amd64 1.90.0-6.1+b1 [11.3 MB] Get:225 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.90.0.2+nmu1 [3200 B] Get:226 http://deb.debian.org/debian unstable/main amd64 libboost1.90-tools-dev amd64 1.90.0-6.1+b1 [1357 kB] Get:227 http://deb.debian.org/debian unstable/main amd64 libboost-tools-dev amd64 1.90.0.2+nmu1 [3172 B] Get:228 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.90.0 amd64 1.90.0-6.1+b1 [227 kB] Get:229 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.90-dev amd64 1.90.0-6.1+b1 [229 kB] Get:230 http://deb.debian.org/debian unstable/main amd64 libboost-atomic-dev amd64 1.90.0.2+nmu1 [3296 B] Get:231 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.90.0 amd64 1.90.0-6.1+b1 [241 kB] Get:232 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.90-dev amd64 1.90.0-6.1+b1 [247 kB] Get:233 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.90.0.2+nmu1 [3620 B] Get:234 http://deb.debian.org/debian unstable/main amd64 libboost-container1.90.0 amd64 1.90.0-6.1+b1 [254 kB] Get:235 http://deb.debian.org/debian unstable/main amd64 libboost-container1.90-dev amd64 1.90.0-6.1+b1 [260 kB] Get:236 http://deb.debian.org/debian unstable/main amd64 libboost-container-dev amd64 1.90.0.2+nmu1 [3472 B] Get:237 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.90.0 amd64 1.90.0-6.1+b1 [222 kB] Get:238 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.90.0 amd64 1.90.0-6.1+b1 [333 kB] Get:239 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.90-dev amd64 1.90.0-6.1+b1 [372 kB] Get:240 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.90-dev amd64 1.90.0-6.1+b1 [231 kB] Get:241 http://deb.debian.org/debian unstable/main amd64 libboost-exception1.90-dev amd64 1.90.0-6.1+b1 [222 kB] Get:242 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.90.0 amd64 1.90.0-6.1+b1 [260 kB] Get:243 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.90-dev amd64 1.90.0-6.1+b1 [268 kB] Get:244 http://deb.debian.org/debian unstable/main amd64 libboost-context1.90.0 amd64 1.90.0-6.1+b1 [223 kB] Get:245 http://deb.debian.org/debian unstable/main amd64 libboost-context1.90-dev amd64 1.90.0-6.1+b1 [225 kB] Get:246 http://deb.debian.org/debian unstable/main amd64 libboost-context-dev amd64 1.90.0.2+nmu1 [3200 B] Get:247 http://deb.debian.org/debian unstable/main amd64 libboost-coroutine1.90.0 amd64 1.90.0-6.1+b1 [226 kB] Get:248 http://deb.debian.org/debian unstable/main amd64 libboost-coroutine1.90-dev amd64 1.90.0-6.1+b1 [228 kB] Get:249 http://deb.debian.org/debian unstable/main amd64 libboost-coroutine-dev amd64 1.90.0.2+nmu1 [3268 B] Get:250 http://deb.debian.org/debian unstable/main amd64 libboost-date-time-dev amd64 1.90.0.2+nmu1 [2988 B] Get:251 http://deb.debian.org/debian unstable/main amd64 libboost-exception-dev amd64 1.90.0.2+nmu1 [2984 B] Get:252 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.90.0 amd64 1.90.0-6.1+b1 [295 kB] Get:253 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.90-dev amd64 1.90.0-6.1+b1 [313 kB] Get:254 http://deb.debian.org/debian unstable/main amd64 libboost-fiber1.90.0 amd64 1.90.0-6.1+b1 [250 kB] Get:255 http://deb.debian.org/debian unstable/main amd64 libboost-fiber1.90-dev amd64 1.90.0-6.1+b1 [261 kB] Get:256 http://deb.debian.org/debian unstable/main amd64 libboost-fiber-dev amd64 1.90.0.2+nmu1 [3428 B] Get:257 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.90.0.2+nmu1 [3020 B] Get:258 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.13-stable-1 [133 kB] Get:259 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.13-stable-1 [53.8 kB] Get:260 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:261 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 64.0-1 [76.5 kB] Get:262 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 2.1.0-1.1+b2 [716 kB] Get:263 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.14.0-2 [166 kB] Get:264 http://deb.debian.org/debian unstable/main amd64 libesmtp6 amd64 1.1.0-3.2+b2 [59.3 kB] Get:265 http://deb.debian.org/debian unstable/main amd64 libmunge2 amd64 0.5.18-1 [18.8 kB] Get:266 http://deb.debian.org/debian unstable/main amd64 pci.ids all 0.0~2026.07.21-1 [285 kB] Get:267 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.19-2 [18.5 kB] Get:268 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b3 [14.1 kB] Get:269 http://deb.debian.org/debian unstable/main amd64 libze1 amd64 1.32.0-1 [648 kB] Get:270 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.4-1+b1 [42.8 kB] Get:271 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.14.0-2 [21.7 kB] Get:272 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 6.1.1~rc2-5 [759 kB] Get:273 http://deb.debian.org/debian unstable/main amd64 libfuse3-4 amd64 3.18.2-2 [103 kB] Get:274 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 64.0-1 [29.6 kB] Get:275 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 64.0-1 [44.2 kB] Get:276 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.22.0-1 [1064 kB] Get:277 http://deb.debian.org/debian unstable/main amd64 libucc1 amd64 1.8.0-2 [345 kB] Get:278 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 5.0.10-5 [2103 kB] Get:279 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.90.0 amd64 1.90.0-6.1+b1 [273 kB] Get:280 http://deb.debian.org/debian unstable/main amd64 libboost-graph-parallel1.90.0 amd64 1.90.0-6.1+b1 [276 kB] Get:281 http://deb.debian.org/debian unstable/main amd64 libboost-graph1.90.0 amd64 1.90.0-6.1+b1 [364 kB] Get:282 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.90.0 amd64 1.90.0-6.1+b1 [336 kB] Get:283 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.90-dev amd64 1.90.0-6.1+b1 [353 kB] Get:284 http://deb.debian.org/debian unstable/main amd64 libboost-test1.90.0 amd64 1.90.0-6.1+b1 [483 kB] Get:285 http://deb.debian.org/debian unstable/main amd64 libboost-test1.90-dev amd64 1.90.0-6.1+b1 [558 kB] Get:286 http://deb.debian.org/debian unstable/main amd64 libboost-graph1.90-dev amd64 1.90.0-6.1+b1 [389 kB] Get:287 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.10-5 [31.1 kB] Get:288 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.12.0-2+b1 [105 kB] Get:289 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.12.0-2+b1 [220 kB] Get:290 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 64.0-1 [745 kB] Get:291 http://deb.debian.org/debian unstable/main amd64 libprrte4 amd64 4.1.1~rc2-7 [541 kB] Get:292 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:293 http://deb.debian.org/debian unstable/main amd64 prrte-common all 4.1.1~rc2-7 [40.4 kB] Get:294 http://deb.debian.org/debian unstable/main amd64 libprrte-dev amd64 4.1.1~rc2-7 [3630 kB] Get:295 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.19-1+b2 [36.2 kB] Get:296 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.6.2-2 [171 kB] Get:297 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.14.0-2 [260 kB] Get:298 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.13-stable-1 [183 kB] Get:299 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.13-stable-1 [108 kB] Get:300 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.13-stable-1 [60.9 kB] Get:301 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.13-stable-1 [307 kB] Get:302 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.14.2+dfsg-1 [245 kB] Get:303 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:304 http://deb.debian.org/debian unstable/main amd64 libprrte-bin amd64 4.1.1~rc2-7 [41.6 kB] Get:305 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.10-5 [179 kB] Get:306 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 5.0.10-5 [1030 kB] Get:307 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.20 [3504 B] Get:308 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.90-dev amd64 1.90.0-6.1+b1 [293 kB] Get:309 http://deb.debian.org/debian unstable/main amd64 libboost-graph-parallel1.90-dev amd64 1.90.0-6.1+b1 [281 kB] Get:310 http://deb.debian.org/debian unstable/main amd64 libboost-graph-parallel-dev amd64 1.90.0.2+nmu1 [3120 B] Get:311 http://deb.debian.org/debian unstable/main amd64 libboost-graph-dev amd64 1.90.0.2+nmu1 [3096 B] Get:312 http://deb.debian.org/debian unstable/main amd64 libboost-random1.90.0 amd64 1.90.0-6.1+b1 [236 kB] Get:313 http://deb.debian.org/debian unstable/main amd64 libboost-random1.90-dev amd64 1.90.0-6.1+b1 [239 kB] Get:314 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.90.0 amd64 1.90.0-6.1+b1 [248 kB] Get:315 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.90-dev amd64 1.90.0-6.1+b1 [257 kB] Get:316 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.90.0.2+nmu1 [2976 B] Get:317 http://deb.debian.org/debian unstable/main amd64 libboost-json1.90.0 amd64 1.90.0-6.1+b1 [369 kB] Get:318 http://deb.debian.org/debian unstable/main amd64 libboost-json1.90-dev amd64 1.90.0-6.1+b1 [382 kB] Get:319 http://deb.debian.org/debian unstable/main amd64 libboost-json-dev amd64 1.90.0.2+nmu1 [3104 B] Get:320 http://deb.debian.org/debian unstable/main amd64 libboost-charconv1.90.0 amd64 1.90.0-6.1+b1 [304 kB] Get:321 http://deb.debian.org/debian unstable/main amd64 libboost-charconv1.90-dev amd64 1.90.0-6.1+b1 [325 kB] Get:322 http://deb.debian.org/debian unstable/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:323 http://deb.debian.org/debian unstable/main amd64 libboost-locale1.90.0 amd64 1.90.0-6.1+b1 [513 kB] Get:324 http://deb.debian.org/debian unstable/main amd64 libboost-locale1.90-dev amd64 1.90.0-6.1+b1 [606 kB] Get:325 http://deb.debian.org/debian unstable/main amd64 libboost-locale-dev amd64 1.90.0.2+nmu1 [3324 B] Get:326 http://deb.debian.org/debian unstable/main amd64 libboost-log1.90.0 amd64 1.90.0-6.1+b1 [774 kB] Get:327 http://deb.debian.org/debian unstable/main amd64 libboost-log1.90-dev amd64 1.90.0-6.1+b1 [963 kB] Get:328 http://deb.debian.org/debian unstable/main amd64 libboost-log-dev amd64 1.90.0.2+nmu1 [3192 B] Get:329 http://deb.debian.org/debian unstable/main amd64 libboost-math1.90.0 amd64 1.90.0-6.1+b1 [496 kB] Get:330 http://deb.debian.org/debian unstable/main amd64 libboost-math1.90-dev amd64 1.90.0-6.1+b1 [534 kB] Get:331 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.90.0.2+nmu1 [3196 B] Get:332 http://deb.debian.org/debian unstable/main amd64 libboost-python1.90.0 amd64 1.90.0-6.1+b1 [304 kB] Get:333 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.20 [2720 B] Get:334 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-python1.90.0 amd64 1.90.0-6.1+b1 [227 kB] Get:335 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-python1.90-dev amd64 1.90.0-6.1+b1 [229 kB] Get:336 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-python-dev amd64 1.90.0.2+nmu1 [3120 B] Get:337 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-dev amd64 1.90.0.2+nmu1 [3072 B] Get:338 http://deb.debian.org/debian unstable/main amd64 libboost-nowide1.90.0 amd64 1.90.0-6.1+b1 [226 kB] Get:339 http://deb.debian.org/debian unstable/main amd64 libboost-nowide1.90-dev amd64 1.90.0-6.1+b1 [228 kB] Get:340 http://deb.debian.org/debian unstable/main amd64 libboost-nowide-dev amd64 1.90.0.2+nmu1 [3072 B] Get:341 http://deb.debian.org/debian unstable/main amd64 libboost-numpy1.90.0 amd64 1.90.0-6.1+b1 [234 kB] Get:342 http://deb.debian.org/debian unstable/main amd64 libboost-numpy1.90-dev amd64 1.90.0-6.1+b1 [238 kB] Get:343 http://deb.debian.org/debian unstable/main amd64 libboost-numpy-dev amd64 1.90.0.2+nmu1 [3032 B] Get:344 http://deb.debian.org/debian unstable/main amd64 libboost-process1.90.0 amd64 1.90.0-6.1+b1 [249 kB] Get:345 http://deb.debian.org/debian unstable/main amd64 libboost-process1.90-dev amd64 1.90.0-6.1+b1 [266 kB] Get:346 http://deb.debian.org/debian unstable/main amd64 libboost-process-dev amd64 1.90.0.2+nmu1 [2956 B] Get:347 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.90.0 amd64 1.90.0-6.1+b1 [359 kB] Get:348 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.90-dev amd64 1.90.0-6.1+b1 [386 kB] Get:349 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.90.0.2+nmu1 [3012 B] Get:350 http://deb.debian.org/debian unstable/main amd64 libpython3.14 amd64 3.14.7-3 [2530 kB] Get:351 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.8.4-1 [186 kB] Get:352 http://deb.debian.org/debian unstable/main amd64 libpython3.14-dev amd64 3.14.7-3 [5820 kB] Get:353 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.14.7-3 [8492 B] Get:354 http://deb.debian.org/debian unstable/main amd64 python3.14-dev amd64 3.14.7-3 [508 kB] Get:355 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 9.1.0-7 [46.1 kB] Get:356 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.14.7-3 [26.7 kB] Get:357 http://deb.debian.org/debian unstable/main amd64 libboost-python1.90-dev amd64 1.90.0-6.1+b1 [327 kB] Get:358 http://deb.debian.org/debian unstable/main amd64 libboost-python-dev amd64 1.90.0.2+nmu1 [3292 B] Get:359 http://deb.debian.org/debian unstable/main amd64 libboost-random-dev amd64 1.90.0.2+nmu1 [2996 B] Get:360 http://deb.debian.org/debian unstable/main amd64 libboost-regex-dev amd64 1.90.0.2+nmu1 [3260 B] Get:361 http://deb.debian.org/debian unstable/main amd64 libboost-serialization-dev amd64 1.90.0.2+nmu1 [3220 B] Get:362 http://deb.debian.org/debian unstable/main amd64 libboost-stacktrace1.90.0 amd64 1.90.0-6.1+b1 [296 kB] Get:363 http://deb.debian.org/debian unstable/main amd64 libboost-stacktrace1.90-dev amd64 1.90.0-6.1+b1 [256 kB] Get:364 http://deb.debian.org/debian unstable/main amd64 libboost-stacktrace-dev amd64 1.90.0.2+nmu1 [2988 B] Get:365 http://deb.debian.org/debian unstable/main amd64 libboost-test-dev amd64 1.90.0.2+nmu1 [3024 B] Get:366 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.90.0.2+nmu1 [3020 B] Get:367 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.90.0 amd64 1.90.0-6.1+b1 [227 kB] Get:368 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.90-dev amd64 1.90.0-6.1+b1 [229 kB] Get:369 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.90.0.2+nmu1 [3120 B] Get:370 http://deb.debian.org/debian unstable/main amd64 libboost-type-erasure1.90.0 amd64 1.90.0-6.1+b1 [242 kB] Get:371 http://deb.debian.org/debian unstable/main amd64 libboost-type-erasure1.90-dev amd64 1.90.0-6.1+b1 [246 kB] Get:372 http://deb.debian.org/debian unstable/main amd64 libboost-type-erasure-dev amd64 1.90.0.2+nmu1 [3088 B] Get:373 http://deb.debian.org/debian unstable/main amd64 libboost-url1.90.0 amd64 1.90.0-6.1+b1 [339 kB] Get:374 http://deb.debian.org/debian unstable/main amd64 libboost-url1.90-dev amd64 1.90.0-6.1+b1 [432 kB] Get:375 http://deb.debian.org/debian unstable/main amd64 libboost-url-dev amd64 1.90.0.2+nmu1 [3124 B] Get:376 http://deb.debian.org/debian unstable/main amd64 libboost-wave1.90.0 amd64 1.90.0-6.1+b1 [451 kB] Get:377 http://deb.debian.org/debian unstable/main amd64 libboost-wave1.90-dev amd64 1.90.0-6.1+b1 [516 kB] Get:378 http://deb.debian.org/debian unstable/main amd64 libboost-wave-dev amd64 1.90.0.2+nmu1 [3024 B] Get:379 http://deb.debian.org/debian unstable/main amd64 libboost-all-dev amd64 1.90.0.2+nmu1 [3340 B] Get:380 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.2.0-4+b1 [324 kB] Get:381 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6+b2 [33.6 kB] Get:382 http://deb.debian.org/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:383 http://deb.debian.org/debian unstable/main amd64 libcairo-script-interpreter2 amd64 1.18.4-3+b1 [58.7 kB] Get:384 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.58-1 [372 kB] Get:385 http://deb.debian.org/debian unstable/main amd64 libfreetype-dev amd64 2.14.3+dfsg-2 [663 kB] Get:386 http://deb.debian.org/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:387 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:388 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:389 http://deb.debian.org/debian unstable/main amd64 libfontconfig-dev amd64 2.17.1-5 [155 kB] Get:390 http://deb.debian.org/debian unstable/main amd64 libffi-dev amd64 3.8.0-2 [79.2 kB] Get:391 http://deb.debian.org/debian unstable/main amd64 libsepol-dev amd64 3.11-1 [378 kB] Get:392 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.48-2 [295 kB] Get:393 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.48-2 [281 kB] Get:394 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.48-2 [67.1 kB] Get:395 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.48-2 [880 kB] Get:396 http://deb.debian.org/debian unstable/main amd64 libselinux-dev amd64 3.11-2 [173 kB] Get:397 http://deb.debian.org/debian unstable/main amd64 libmount-dev amd64 2.42.3-1 [26.9 kB] Get:398 http://deb.debian.org/debian unstable/main amd64 libsysprof-capture-4-dev amd64 50.0-3 [47.8 kB] Get:399 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev amd64 2.89.4-2+b1 [1778 kB] Get:400 http://deb.debian.org/debian unstable/main amd64 libglib2.0-data all 2.89.4-2 [1297 kB] Get:401 http://deb.debian.org/debian unstable/main amd64 libglib2.0-bin amd64 2.89.4-2+b1 [118 kB] Get:402 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 26.2-2 [84.2 kB] Get:403 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev-bin amd64 2.89.4-2+b1 [153 kB] Get:404 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.89.4-2+b1 [38.8 kB] Get:405 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev amd64 2.89.4-2+b1 [39.6 kB] Get:406 http://deb.debian.org/debian unstable/main amd64 libpixman-1-dev amd64 0.46.4-1+b2 [12.0 kB] Get:407 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.12.1-1 [23.9 kB] Get:408 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2025.1-1 [605 kB] Get:409 http://deb.debian.org/debian unstable/main amd64 libice-dev amd64 2:1.1.1-1+b2 [75.3 kB] Get:410 http://deb.debian.org/debian unstable/main amd64 libsm-dev amd64 2:1.2.6-1+b2 [40.3 kB] Get:411 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1+b2 [23.9 kB] Get:412 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-2+b1 [44.0 kB] Get:413 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB] Get:414 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b2 [181 kB] Get:415 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.13-1 [903 kB] Get:416 http://deb.debian.org/debian unstable/main amd64 libxcb-render0-dev amd64 1.17.0-2+b2 [118 kB] Get:417 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0-dev amd64 1.17.0-2+b2 [108 kB] Get:418 http://deb.debian.org/debian unstable/main amd64 libxext-dev amd64 2:1.3.4-1+b4 [105 kB] Get:419 http://deb.debian.org/debian unstable/main amd64 libxrender-dev amd64 1:0.9.12-1+b2 [38.8 kB] Get:420 http://deb.debian.org/debian unstable/main amd64 libcairo2-dev amd64 1.18.4-3+b1 [41.8 kB] Get:421 http://deb.debian.org/debian unstable/main amd64 libcloudproviders0 amd64 0.4.1-1 [29.6 kB] Get:422 http://deb.debian.org/debian unstable/main amd64 libcolord2 amd64 1.4.8-3 [141 kB] Get:423 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:424 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get:425 http://deb.debian.org/debian unstable/main amd64 libcoordgen3 amd64 3.0.2-4 [214 kB] Get:426 http://deb.debian.org/debian unstable/main amd64 libcoordgen-dev amd64 3.0.2-4 [45.8 kB] Get:427 http://deb.debian.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.5.2+20251210-1 [130 kB] Get:428 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.26.0-1 [29.4 kB] Get:429 http://deb.debian.org/debian unstable/main amd64 libdecor-0-0 amd64 0.2.5-1+b1 [15.8 kB] Get:430 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.134-3 [64.2 kB] Get:431 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 5.0.1-1 [1192 kB] Get:432 http://deb.debian.org/debian unstable/main amd64 libepoxy0 amd64 1.5.10-2+b2 [199 kB] Get:433 http://deb.debian.org/debian unstable/main amd64 libogg0 amd64 1.3.6-2+b1 [24.0 kB] Get:434 http://deb.debian.org/debian unstable/main amd64 libflac14 amd64 1.5.0+ds-5+b1 [179 kB] Get:435 http://deb.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB] Get:436 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:437 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.2-2+b2 [37.2 kB] Get:438 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.13-1 [250 kB] Get:439 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b2 [107 kB] Get:440 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b2 [106 kB] Get:441 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b2 [117 kB] Get:442 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b2 [109 kB] Get:443 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b2 [109 kB] Get:444 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3.3-1+b2 [11.2 kB] Get:445 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 26.1.6-1 [11.7 MB] Get:446 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 26.1.6-1 [55.5 kB] Get:447 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-3+b1 [54.3 kB] Get:448 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.4.357.0-1 [150 kB] Get:449 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 26.1.6-1 [45.1 kB] Get:450 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b2 [122 kB] Get:451 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-2+b1 [20.2 kB] Get:452 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 26.1.6-1 [130 kB] Get:453 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-3+b1 [34.9 kB] Get:454 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-3+b1 [87.1 kB] Get:455 http://deb.debian.org/debian unstable/main amd64 libglx-dev amd64 1.7.0-3+b1 [15.0 kB] Get:456 http://deb.debian.org/debian unstable/main amd64 libgl-dev amd64 1.7.0-3+b1 [99.8 kB] Get:457 http://deb.debian.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-3+b1 [30.4 kB] Get:458 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1+b4 [191 kB] Get:459 http://deb.debian.org/debian unstable/main amd64 libopengl-dev amd64 1.7.0-3+b1 [4580 B] Get:460 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1+b4 [229 kB] Get:461 http://deb.debian.org/debian unstable/main amd64 libwayland-cursor0 amd64 1.26.0-1 [11.8 kB] Get:462 http://deb.debian.org/debian unstable/main amd64 libwayland-egl1 amd64 1.26.0-1 [5688 B] Get:463 http://deb.debian.org/debian unstable/main amd64 libxcomposite1 amd64 1:0.4.6-1+b2 [16.6 kB] Get:464 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b5 [20.3 kB] Get:465 http://deb.debian.org/debian unstable/main amd64 libxcursor1 amd64 1:1.2.3-1+b2 [40.3 kB] Get:466 http://deb.debian.org/debian unstable/main amd64 libxdamage1 amd64 1:1.1.7-1+b1 [16.3 kB] Get:467 http://deb.debian.org/debian unstable/main amd64 libxinerama1 amd64 2:1.1.4-3+b5 [16.0 kB] Get:468 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.48-1 [841 kB] Get:469 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.13.1-1 [148 kB] Get:470 http://deb.debian.org/debian unstable/main amd64 libxrandr2 amd64 2:1.5.4-1+b4 [36.5 kB] Get:471 http://deb.debian.org/debian unstable/main amd64 libgtk-3-common all 3.24.52-1 [4929 kB] Get:472 http://deb.debian.org/debian unstable/main amd64 libgtk-3-0t64 amd64 3.24.52-1 [2920 kB] Get:473 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-subset0 amd64 12.3.2-2+b2 [574 kB] Get:474 http://deb.debian.org/debian unstable/main amd64 libinchi1.07 amd64 1.07.3+dfsg-2 [556 kB] Get:475 http://deb.debian.org/debian unstable/main amd64 libinchi-dev amd64 1.07.3+dfsg-2 [19.6 kB] Get:476 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2026.20260303.78225+ds-5 [160 kB] Get:477 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.3-1 [369 kB] Get:478 http://deb.debian.org/debian unstable/main amd64 libmaeparser1 amd64 1.3.3-4+b1 [95.1 kB] Get:479 http://deb.debian.org/debian unstable/main amd64 libmaeparser-dev amd64 1.3.3-4+b1 [13.0 kB] Get:480 http://deb.debian.org/debian unstable/main amd64 libmpg123-0t64 amd64 1.33.7-1 [154 kB] Get:481 http://deb.debian.org/debian unstable/main amd64 libmp3lame0 amd64 4.0-1 [289 kB] Get:482 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-5 [36.0 kB] Get:483 http://deb.debian.org/debian unstable/main amd64 libnotify4 amd64 0.8.8-1+b1 [27.2 kB] Get:484 http://deb.debian.org/debian unstable/main amd64 libopus0 amd64 1.6.1-1+b1 [3484 kB] Get:485 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:486 http://deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get:487 http://deb.debian.org/debian unstable/main amd64 libperl-dev amd64 5.42.3-1 [1163 kB] Get:488 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b3 [25.5 kB] Get:489 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2026.20260303.78225+ds-5 [51.9 kB] Get:490 http://deb.debian.org/debian unstable/main amd64 libvorbis0a amd64 1.3.7-3+b2 [93.2 kB] Get:491 http://deb.debian.org/debian unstable/main amd64 libvorbisenc2 amd64 1.3.7-3+b2 [76.1 kB] Get:492 http://deb.debian.org/debian unstable/main amd64 libsndfile1 amd64 1.2.2-4+b1 [205 kB] Get:493 http://deb.debian.org/debian unstable/main amd64 libpulse0 amd64 17.0+dfsg1-3 [283 kB] Get:494 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:495 http://deb.debian.org/debian unstable/main amd64 libxtst6 amd64 2:1.2.5-1+b2 [26.2 kB] Get:496 http://deb.debian.org/debian unstable/main amd64 libsdl3-0 amd64 3.4.16+ds-1 [1118 kB] Get:497 http://deb.debian.org/debian unstable/main amd64 libsdl2-2.0-0 amd64 2.32.72+ds-1 [123 kB] Get:498 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2026.20260303.78225+ds-5 [65.4 kB] Get:499 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.13+ds-2 [370 kB] Get:500 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2026.20260303.78225+ds-5 [116 kB] Get:501 http://deb.debian.org/debian unstable/main amd64 libwxbase3.2-1t64 amd64 3.2.11+dfsg1-1 [1200 kB] Get:502 http://deb.debian.org/debian unstable/main amd64 libwxgtk3.2-1t64 amd64 3.2.11+dfsg1-1 [5238 kB] Get:503 http://deb.debian.org/debian unstable/main amd64 libwxgtk-gl3.2-1t64 amd64 3.2.11+dfsg1-1 [87.9 kB] Get:504 http://deb.debian.org/debian unstable/main amd64 wx-common amd64 3.2.11+dfsg1-1 [125 kB] Get:505 http://deb.debian.org/debian unstable/main amd64 wx3.2-headers all 3.2.11+dfsg1-1 [1132 kB] Get:506 http://deb.debian.org/debian unstable/main amd64 libwxgtk3.2-dev amd64 3.2.11+dfsg1-1 [83.6 kB] Get:507 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-4+b1 [59.6 kB] Get:508 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1+b2 [214 kB] Get:509 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.15.4+dfsg-1 [794 kB] Get:510 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2+b1 [58.9 kB] Get:511 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.20 [29.7 kB] Get:512 http://deb.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1.1 [350 kB] Get:513 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.14.7-3 [984 B] Get:514 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-4 [13.7 kB] Get:515 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 11.1.0-2 [74.5 kB] Get:516 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:517 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-3 [37.1 kB] Get:518 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-2 [32.8 kB] Get:519 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-2 [8184 B] Get:520 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:521 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:522 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 80.9.0-2 [224 kB] Get:523 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get:524 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 80.9.0-2 [698 kB] Get:525 http://deb.debian.org/debian unstable/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.6 [98.2 kB] Get:526 http://deb.debian.org/debian unstable/main amd64 swig amd64 4.5.0-3 [1597 kB] Get:527 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:528 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2026.20260303.78225+ds-5 [9309 kB] Get:529 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:530 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2026.20260711-2 [24.5 MB] Get:531 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2026.20260711-2 [1451 kB] Get:532 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2026.20260711-2 [8454 kB] Get:533 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2026.20260711-2 [23.8 MB] Get:534 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2026.20260711-2 [32.7 MB] Preconfiguring packages ... Fetched 509 MB in 3s (168 MB/s) Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... 23467 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_262~rc1-2_amd64.deb ... Unpacking libsystemd-shared:amd64 (262~rc1-2) ... Setting up libsystemd-shared:amd64 (262~rc1-2) ... Selecting previously unselected package systemd. (Reading database ... 23475 files and directories currently installed.) Preparing to unpack .../systemd_262~rc1-2_amd64.deb ... Unpacking systemd (262~rc1-2) ... Setting up systemd (262~rc1-2) ... Selecting previously unselected package systemd-sysv. (Reading database ... 24430 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_262~rc1-2_amd64.deb ... Unpacking systemd-sysv (262~rc1-2) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../1-fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... 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Setting up libxshmfence1:amd64 (1.3.3-1+b2) ... Setting up at-spi2-common (2.61.90-1) ... Setting up libcrypt-dev:amd64 (1:4.5.2+20251210-1) ... Setting up libtiff6:amd64 (4.7.2-1) ... Setting up libxcb-randr0:amd64 (1.17.0-2+b2) ... Setting up dbus-session-bus-common (1.16.2-5) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up procps (2:4.0.7-1) ... Setting up libnl-3-200:amd64 (3.12.0-2+b1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up openmpi-common (5.0.10-5) ... Setting up libboost1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up fonts-lmodern (2.005-2) ... Setting up libopenjp2-7:amd64 (2.5.4-1.1) ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Setting up libthai-data (0.1.30-3) ... Setting up libboost-atomic1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up xorg-sgml-doctools (1:1.12.1-1) ... Setting up netbase (6.6) ... Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up libboost-serialization1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up librhash1:amd64 (1.4.6-1.1+b1) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libboost-dev:amd64 (1.90.0.2+nmu1) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up libglu1-mesa:amd64 (9.0.2-1.1+b4) ... Setting up libboost-regex1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libwayland-egl1:amd64 (1.26.0-1) ... Setting up libclang-common-21-dev:amd64 (1:21.1.8-10) ... Setting up libpaper2:amd64 (2.2.5-0.4) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up libboost-filesystem1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libopengl-dev:amd64 (1.7.0-3+b1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up libcoordgen3:amd64 (3.0.2-4) ... Setting up libfuse3-4:amd64 (3.18.2-2) ... Setting up libclang1-21 (1:21.1.8-10) ... Setting up libboost-context1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up dbus-system-bus-common (1.16.2-5) ... Setting up libfido2-1:amd64 (1.17.0-2) ... Setting up libboost-random1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libde265-0:amd64 (1.1.2-1) ... Setting up libboost-url1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libinchi1.07 (1.07.3+dfsg-2) ... Setting up libdrm-common (2.4.134-3) ... Setting up libyuv0:amd64 (0.0.1971.20260904-1) ... Setting up libxcomposite1:amd64 (1:0.4.6-1+b2) ... Setting up libarchive13t64:amd64 (3.8.9-1) ... Setting up libjxl0.11:amd64 (0.11.2-5.1) ... Setting up libboost-container1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libboost-json1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up fonts-font-awesome (7.3.0+dfsg-1) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libboost-iostreams1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up dbus-bin (1.16.2-5+b1) ... Setting up libbrotli-dev:amd64 (1.2.0-4+b1) ... Setting up libfmt10:amd64 (10.1.1+ds1-4+b2) ... Setting up libboost-locale1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libmp3lame0:amd64 (4.0-1) ... Setting up libvorbisenc2:amd64 (1.3.7-3+b2) ... Setting up libsynctex2:amd64 (2026.20260303.78225+ds-5) ... Setting up libbz2-dev:amd64 (1.0.8-6+b2) ... Setting up libxkbcommon0:amd64 (1.13.1-1) ... Setting up prrte-common (4.1.1~rc2-7) ... Setting up libpotrace0:amd64 (1.16-2+b3) ... Setting up libwayland-client0:amd64 (1.26.0-1) ... Setting up libboost-chrono1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2025.1-1) ... Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b2) ... Setting up libblkid-dev:amd64 (2.42.3-1) ... Setting up libx11-xcb1:amd64 (2:1.8.13-1) ... Setting up libice6:amd64 (2:1.1.1-1+b2) ... Setting up libpciaccess0:amd64 (0.19-2) ... Setting up libboost-serialization1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libboost-timer1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libavif16:amd64 (1.4.2-1) ... Setting up libinchi-dev (1.07.3+dfsg-2) ... Setting up gettext (1.0-3) ... Setting up libxdamage1:amd64 (1:1.1.7-1+b1) ... Setting up libatk1.0-0t64:amd64 (2.61.90-1) ... Setting up libpdfbox-java (1:1.8.16-5) ... Setting up libboost-numpy1.90.0 (1.90.0-6.1+b1) ... Setting up libxau-dev:amd64 (1:1.0.11-1+b2) ... Setting up libxpm4:amd64 (1:3.5.19-1) ... Setting up libpcre2-dev:amd64 (10.48-2) ... Setting up libxrender1:amd64 (1:0.9.12-1+b2) ... Setting up libice-dev:amd64 (2:1.1.1-1+b2) ... Setting up libboost-numpy1.90-dev (1.90.0-6.1+b1) ... Setting up libtool (2.6.2-2) ... Setting up libgirepository-2.0-0:amd64 (2.89.4-2+b1) ... Setting up libpython3.14-stdlib:amd64 (3.14.7-3) ... Setting up libboost-chrono-dev:amd64 (1.90.0.2+nmu1) ... Setting up openssh-common (1:10.5p1-1) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up openssh-client (1:10.5p1-1) ... Created symlink '/etc/systemd/user/sockets.target.wants/ssh-agent.socket' → '/usr/lib/systemd/user/ssh-agent.socket'. Setting up libboost-url1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up libgfortran-16-dev:amd64 (16.2.0-2) ... Setting up libpng-dev:amd64 (1.6.58-1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:amd64 (0.8-18) ... Setting up libcloudproviders0:amd64 (0.4.1-1) ... Setting up libcommons-logging-java (1.3.0-2) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libglib2.0-bin (2.89.4-2+b1) ... Setting up libboost-tools-dev (1.90.0.2+nmu1) ... Setting up libperl-dev:amd64 (5.42.3-1) ... Setting up libboost-nowide1.90-dev (1.90.0-6.1+b1) ... Setting up dbus-daemon (1.16.2-5+b1) ... Setting up libpaper-utils (2.2.5-0.4) ... Setting up libboost-charconv1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libboost-nowide-dev (1.90.0.2+nmu1) ... Setting up libboost-fiber1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libcolord2:amd64 (1.4.8-3) ... Setting up pkgconf:amd64 (2.5.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.19-1+b2) ... Setting up libnl-route-3-200:amd64 (3.12.0-2+b1) ... Setting up libboost-stacktrace1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libmaeparser1:amd64 (1.3.3-4+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b3) ... Setting up libdconf1:amd64 (0.49.0-4+b1) ... Setting up dh-autoreconf (23) ... Setting up libboost-container1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libltdl-dev:amd64 (2.6.2-2) ... Setting up libthai0:amd64 (0.1.30-3) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-2+b1) ... Setting up libxml2-dev:amd64 (2.15.4+dfsg-1) ... Setting up libclang-cpp21 (1:21.1.8-10) ... Setting up libjs-jquery-ui (1.14.2+dfsg-1) ... Setting up libptexenc1:amd64 (2026.20260303.78225+ds-5) ... Setting up libfreetype6:amd64 (2.14.3+dfsg-2) ... Setting up libboost-coroutine1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b5) ... Setting up dbus (1.16.2-5+b1) ... invoke-rc.d: could not determine current runlevel Setting up libxinerama1:amd64 (2:1.1.4-3+b5) ... Setting up libboost-log1.90.0 (1.90.0-6.1+b1) ... Setting up libboost-numpy-dev (1.90.0.2+nmu1) ... Setting up libeigen3-dev (5.0.1-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b4) ... Setting up libboost-serialization-dev:amd64 (1.90.0.2+nmu1) ... Setting up ucf (3.0056) ... Setting up libspdlog1.15:amd64 (1:1.15.3+ds-1+b2) ... Setting up gfortran-16-x86-64-linux-gnu (16.2.0-2) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up libgvc7:amd64 (14.1.2-1+b3) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up libboost-exception1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libdrm2:amd64 (2.4.134-3) ... Setting up libnl-3-dev:amd64 (3.12.0-2+b1) ... Setting up libboost-regex1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up groff-base (1.24.1-1) ... Setting up gfortran-16 (16.2.0-2) ... Setting up libboost-process1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libwayland-cursor0:amd64 (1.26.0-1) ... Setting up libboost-stacktrace-dev:amd64 (1.90.0.2+nmu1) ... Setting up libamd-comgr3:amd64 (7.0.2+dfsg-3) ... Setting up libpam-systemd:amd64 (262~rc1-2) ... Setting up libpython3.14:amd64 (3.14.7-3) ... Setting up libdecor-0-0:amd64 (0.2.5-1+b1) ... 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Setting up libmaeparser-dev:amd64 (1.3.3-4+b1) ... Setting up libboost-test1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libibverbs1:amd64 (64.0-1) ... Creating group 'rdma' with GID 993. Setting up libgio-2.0-dev:amd64 (2.89.4-2+b1) ... Setting up girepository-tools:amd64 (2.89.4-2+b1) ... Setting up libboost-filesystem1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libpython3-dev:amd64 (3.14.7-3) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b2) ... Setting up libxi6:amd64 (2:1.8.3-1) ... Setting up libcurl4t64:amd64 (8.22.0-1) ... Setting up python3.14-dev (3.14.7-3) ... Setting up libboost-program-options1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up ibverbs-providers:amd64 (64.0-1) ... Setting up libpulse0:amd64 (17.0+dfsg1-3) ... Setting up libsm-dev:amd64 (2:1.2.6-1+b2) ... Setting up libxtst6:amd64 (2:1.2.5-1+b2) ... Setting up po-debconf (1.0.22) ... Setting up libxcursor1:amd64 (1:1.2.3-1+b2) ... Setting up libdrm-intel1:amd64 (2.4.134-3) ... Setting up libx11-dev:amd64 (2:1.8.13-1) ... Setting up libboost-random-dev:amd64 (1.90.0.2+nmu1) ... Setting up libboost-iostreams1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libboost-math1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up python3 (3.14.7-3) ... Setting up libboost-exception-dev:amd64 (1.90.0.2+nmu1) ... Setting up libboost-iostreams-dev:amd64 (1.90.0.2+nmu1) ... Setting up python3-zipp (3.23.0-1) ... Setting up libboost-json1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-4) ... Setting up libhwloc-plugins:amd64 (2.14.0-2) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' → '/usr/lib/systemd/system/man-db.timer'. Setting up libboost-container-dev:amd64 (1.90.0.2+nmu1) ... Setting up libfreetype-dev:amd64 (2.14.3+dfsg-2) ... Setting up libboost-test-dev:amd64 (1.90.0.2+nmu1) ... Setting up tex-common (6.20) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libnl-route-3-dev:amd64 (3.12.0-2+b1) ... Setting up libxcb-shm0-dev:amd64 (1.17.0-2+b2) ... Setting up dbus-user-session (1.16.2-5+b1) ... Setting up doxygen (1.15.0+ds1-1.1) ... Setting up python3-packaging (26.2-2) ... Setting up libboost-thread1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libboost-program-options-dev:amd64 (1.90.0.2+nmu1) ... Setting up libatspi2.0-0t64:amd64 (2.61.90-1) ... Setting up libboost-type-erasure1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up python3-dev (3.14.7-3) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up libevent-dev (2.1.13-stable-1) ... Setting up python3-typing-extensions (4.16.0-5) ... Setting up libxcb-render0-dev:amd64 (1.17.0-2+b2) ... Setting up libpmix2t64:amd64 (6.1.1~rc2-5) ... Setting up libboost-context1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libboost-date-time-dev:amd64 (1.90.0.2+nmu1) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b4) ... Setting up libboost-graph1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libboost-atomic-dev:amd64 (1.90.0.2+nmu1) ... Setting up libhsa-runtime64-1:amd64 (6.4.3+dfsg-5) ... Setting up libharfbuzz-subset0:amd64 (12.3.2-2+b2) ... Setting up cmake (4.3.4-1) ... Setting up librdmacm1t64:amd64 (64.0-1) ... Setting up libboost-wave1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libboost-json-dev:amd64 (1.90.0.2+nmu1) ... Setting up libwxbase3.2-1t64:amd64 (3.2.11+dfsg1-1) ... Setting up libxrender-dev:amd64 (1:0.9.12-1+b2) ... Setting up libcups2t64:amd64 (2.4.18-1) ... Setting up libboost-filesystem-dev:amd64 (1.90.0.2+nmu1) ... Setting up libboost-thread-dev:amd64 (1.90.0.2+nmu1) ... Setting up dh-python (7.20260623) ... Setting up libboost-fiber1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libatk-bridge2.0-0t64:amd64 (2.61.90-1) ... Setting up python3-more-itertools (11.1.0-2) ... Setting up libfabric1:amd64 (2.1.0-1.1+b2) ... Setting up wx-common (3.2.11+dfsg1-1) ... Setting up libboost-graph-dev:amd64 (1.90.0.2+nmu1) ... Setting up mesa-libgallium:amd64 (26.1.6-1) ... Setting up libgio-2.0-dev-bin (2.89.4-2+b1) ... Setting up libxmu6:amd64 (2:1.1.3-4+b1) ... Setting up libprrte4:amd64 (4.1.1~rc2-7) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-2) ... Setting up libgbm1:amd64 (26.1.6-1) ... Setting up libboost-math-dev:amd64 (1.90.0.2+nmu1) ... Setting up preview-latex-style (13.2-1.1) ... Setting up libboost-python1.90-dev (1.90.0-6.1+b1) ... Setting up python3-typeguard (4.4.4-3) ... Setting up libgl1-mesa-dri:amd64 (26.1.6-1) ... Setting up libsdl3-0:amd64 (3.4.16+ds-1) ... Setting up python3-all (3.14.7-3) ... Setting up debhelper (14.3) ... Setting up dconf-service (0.49.0-4+b1) ... Setting up libboost-wave-dev:amd64 (1.90.0.2+nmu1) ... Setting up libxaw7:amd64 (2:1.0.16-1+b2) ... Setting up libboost-context-dev:amd64 (1.90.0.2+nmu1) ... Setting up fonts-urw-base35 (20200910-9) ... Setting up libibverbs-dev:amd64 (64.0-1) ... Setting up libboost-log1.90-dev (1.90.0-6.1+b1) ... Setting up libboost-coroutine1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libboost-python-dev (1.90.0.2+nmu1) ... Setting up libboost-type-erasure-dev:amd64 (1.90.0.2+nmu1) ... Setting up libboost-locale1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up python3-inflect (7.5.0-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up libamdhip64-6:amd64 (6.4.3-5) ... Setting up libboost-process1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up libboost-coroutine-dev:amd64 (1.90.0.2+nmu1) ... Setting up libsdl2-2.0-0:amd64 (2.32.72+ds-1) ... Setting up libboost-log-dev (1.90.0.2+nmu1) ... Setting up libboost-fiber-dev:amd64 (1.90.0.2+nmu1) ... Setting up python3-pkg-resources (80.9.0-2) ... Setting up libgs10-common (10.07.1~dfsg-1) ... Setting up libglib2.0-dev-bin (2.89.4-2+b1) ... Setting up libprrte-dev:amd64 (4.1.1~rc2-7) ... Setting up libprrte-bin (4.1.1~rc2-7) ... Setting up libucx0:amd64 (1.22.0-1) ... Setting up libglx-mesa0:amd64 (26.1.6-1) ... Setting up python3-setuptools (80.9.0-2) ... Setting up libglx0:amd64 (1.7.0-3+b1) ... Setting up dconf-gsettings-backend:amd64 (0.49.0-4+b1) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libboost-process-dev:amd64 (1.90.0.2+nmu1) ... Setting up libboost-locale-dev:amd64 (1.90.0.2+nmu1) ... Setting up libgl1:amd64 (1.7.0-3+b1) ... Setting up libglib2.0-dev:amd64 (2.89.4-2+b1) ... Setting up libucc1:amd64 (1.8.0-2) ... Setting up libglx-dev:amd64 (1.7.0-3+b1) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libgl-dev:amd64 (1.7.0-3+b1) ... Setting up libgtk-3-common (3.24.52-1) ... Setting up libgs10:amd64 (10.07.1~dfsg-1) ... Setting up libopenmpi40:amd64 (5.0.10-5) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libfontconfig-dev:amd64 (2.17.1-5) ... Setting up libpango-1.0-0:amd64 (1.58.0-1) ... Setting up libboost-mpi1.90.0 (1.90.0-6.1+b1) ... Setting up ghostscript (10.07.1~dfsg-1) ... Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up libglu1-mesa-dev:amd64 (9.0.2-1.1+b4) ... Setting up texlive-binaries (2026.20260303.78225+ds-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libcairo-gobject2:amd64 (1.18.4-3+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.58.0-1) ... Setting up texlive-base (2026.20260711-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up openmpi-bin (5.0.10-5) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libpangocairo-1.0-0:amd64 (1.58.0-1) ... Setting up libcairo-script-interpreter2:amd64 (1.18.4-3+b1) ... Setting up libboost-graph-parallel1.90.0 (1.90.0-6.1+b1) ... Setting up libgvplugin-pango8:amd64 (14.1.2-1+b3) ... Setting up mpi-default-bin (1.20) ... Setting up texlive-latex-base (2026.20260711-2) ... Setting up texlive-latex-recommended (2026.20260711-2) ... Setting up texlive-pictures (2026.20260711-2) ... Setting up libcairo2-dev:amd64 (1.18.4-3+b1) ... Setting up libopenmpi-dev (5.0.10-5) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libboost-mpi-python1.90.0 (1.90.0-6.1+b1) ... Setting up texlive-latex-extra (2026.20260711-2) ... Setting up mpi-default-dev (1.20) ... Setting up libboost-mpi1.90-dev (1.90.0-6.1+b1) ... Setting up libboost-graph-parallel1.90-dev (1.90.0-6.1+b1) ... Setting up libboost-mpi-python1.90-dev (1.90.0-6.1+b1) ... Setting up libboost-mpi-python-dev (1.90.0.2+nmu1) ... Setting up libboost-mpi-dev (1.90.0.2+nmu1) ... Setting up libboost-graph-parallel-dev (1.90.0.2+nmu1) ... Setting up libboost-all-dev (1.90.0.2+nmu1) ... Setting up libheif-plugin-libde265:amd64 (1.23.3-1) ... Setting up librsvg2-2:amd64 (2.62.1+dfsg-1) ... Setting up libheif-plugin-dav1d:amd64 (1.23.3-1) ... Setting up libheif1:amd64 (1.23.3-1) ... Setting up libgd3:amd64 (2.3.3-14) ... Setting up glycin-loaders (2.1.5+ds-2) ... Setting up libglycin-2-0:amd64 (2.1.5+ds-2) ... Setting up libgvplugin-gd8:amd64 (14.1.2-1+b3) ... Setting up glycin-thumbnailers (2.1.5+ds-2) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.44.7+dfsg-1) ... Setting up graphviz (14.1.2-1+b3) ... Setting up gtk-update-icon-cache (4.23.4+ds-4) ... Setting up adwaita-icon-theme (50.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libnotify4:amd64 (0.8.8-1+b1) ... Setting up libgtk-3-0t64:amd64 (3.24.52-1) ... Setting up libwxgtk3.2-1t64:amd64 (3.2.11+dfsg1-1) ... Setting up libwxgtk-gl3.2-1t64:amd64 (3.2.11+dfsg1-1) ... Setting up libwxgtk3.2-dev:amd64 (3.2.11+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/wx/config/gtk3-unicode-3.2 to provide /usr/bin/wx-config (wx-config) in auto mode Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.43-5) ... Processing triggers for systemd (262~rc1-2) ... Processing triggers for tex-common (6.20) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures Mon, 07 Sep 2026 22:56:40 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment Mon, 07 Sep 2026 22:56:40 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.47-4 dpkg-dev_1.23.7 g++-13_13.4.0-12 g++-16_16.2.0-2 gcc-13_13.4.0-12 gcc-16_16.2.0-2 libc6-dev_2.43-5 libstdc++-13-dev_13.4.0-12 libstdc++-16-dev_16.2.0-2 libstdc++6_16.2.0-2 linux-libc-dev_7.1.13-1 Package versions: adduser_3.159 adwaita-icon-theme_50.0-2 apt_3.3.3 at-spi2-common_2.61.90-1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 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inline signature for ./openbabel_3.1.1+dfsg-14.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./openbabel_3.1.1+dfsg-14.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting openbabel in /build/openbabel-7yTj35/openbabel-3.1.1+dfsg dpkg-source: info: unpacking openbabel_3.1.1+dfsg.orig.tar.xz dpkg-source: info: unpacking openbabel_3.1.1+dfsg-14.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_link_top.diff dpkg-source: info: applying 7de27f309db5f7ec026ef5c5235e5b33bf7d1a85.patch dpkg-source: warning: diff '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/debian/patches/2315.patch' patches file /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/CMakeLists.txt more than once dpkg-source: warning: diff '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/debian/patches/2315.patch' patches file /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/CMakeLists.txt more than once dpkg-source: warning: diff '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/debian/patches/2315.patch' patches file /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/OpenBabel3Config.cmake.in more than once dpkg-source: info: applying 2315.patch dpkg-source: info: applying 650b1f829ac47cc84877a330366ec9485da3ec99.patch dpkg-source: info: applying add-ctime.patch dpkg-source: info: applying 7acf50c9d73f8016e15eb2a45ce74c8909152883.patch dpkg-source: info: applying remove-CMAKE_CXX_STANDARD.patch dpkg-source: info: applying disable-CMP0042.patch dpkg-source: info: applying no-fatal-warnings.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Mon, 07 Sep 2026 22:56:44 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network openbabel_3.1.1+dfsg-14 sid amd64 -------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network openbabel_3.1.1+dfsg-14 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg SCHROOT_ALIAS_NAME=sid-amd64-debomatic SCHROOT_CHROOT_NAME=sid-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=sid-amd64-debomatic-e88f7d43-8664-4af1-b3fb-6ae2e459545b SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package openbabel dpkg-buildpackage: info: source version 3.1.1+dfsg-14 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Santiago Vila dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with=python3 --builddirectory=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir dh_auto_clean -O--builddirectory=/build/openbabel-7yTj35/openbabel-3.1.1\+dfsg/builddir dh_autoreconf_clean -O--builddirectory=/build/openbabel-7yTj35/openbabel-3.1.1\+dfsg/builddir dh_clean -O--builddirectory=/build/openbabel-7yTj35/openbabel-3.1.1\+dfsg/builddir dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building openbabel using existing ../openbabel_3.1.1+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building openbabel in ../openbabel_3.1.1+dfsg-14.debian.tar.xz dpkg-source: info: building openbabel in ../openbabel_3.1.1+dfsg-14.dsc debian/rules binary dh binary --with=python3 --builddirectory=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir dh_update_autotools_config -O--builddirectory=/build/openbabel-7yTj35/openbabel-3.1.1\+dfsg/builddir dh_autoreconf -O--builddirectory=/build/openbabel-7yTj35/openbabel-3.1.1\+dfsg/builddir debian/rules override_dh_auto_configure make[1]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg' dh_auto_configure -- -DCMAKE_BUILD_TYPE=None -DLIB_SUFFIX=/x86_64-linux-gnu -DPYTHON_BINDINGS=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS=ON -DOBPERL_INSTALLDIRS=vendor -DRUN_SWIG=ON -DCMAKE_SKIP_RPATH=ON -DBUILD_GUI=ON -DENABLE_OPENMP=ON -DBUILD_DOCS=ON -DOPENBABEL_USE_SYSTEM_INCHI=ON -DCMAKE_POLICY_VERSION_MINIMUM=3.5 cd builddir && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_C_COMPILER=/usr/bin/x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=/usr/bin/x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=None -DLIB_SUFFIX=/x86_64-linux-gnu -DPYTHON_BINDINGS=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS=ON -DOBPERL_INSTALLDIRS=vendor -DRUN_SWIG=ON -DCMAKE_SKIP_RPATH=ON -DBUILD_GUI=ON -DENABLE_OPENMP=ON -DBUILD_DOCS=ON -DOPENBABEL_USE_SYSTEM_INCHI=ON -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 16.2.0 -- The CXX compiler identification is GNU 16.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake-4.3/Modules/FindPackageHandleStandardArgs.cmake:493 (message): The package name passed to find_package_handle_standard_args() (INCHI) does not match the name of the calling package (Inchi). This can lead to problems in calling code that expects find_package() result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/modules/FindInchi.cmake:19 (find_package_handle_standard_args) CMakeLists.txt:145 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found INCHI: /usr/lib/x86_64-linux-gnu/libinchi.so -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.15.4") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.2") -- Found wxWidgets: -L/usr/lib/x86_64-linux-gnu;-pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.11") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success CMake Warning (dev) at CMakeLists.txt:299 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory CMake Warning (dev) at CMakeLists.txt:358 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: program_options iostreams -- Found OpenMP_C: -fopenmp (found version "5.2") -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") -- Eigen3 version .. found in /usr/include/eigen3, but at least version 2.91.0 is required -- Could NOT find Eigen3 (missing: EIGEN3_VERSION_OK) (Required is at least version "2.91.0") -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") CMake Warning (dev) at CMakeLists.txt:473 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: filesystem iostreams unit_test_framework -- maeparser include dir set as '/usr/include' -- maeparser libraries set as '/usr/lib/x86_64-linux-gnu/libmaeparser.so' -- Maestro formats will be supported. Using MaeParser libraries at /usr/lib/x86_64-linux-gnu/libmaeparser.so. -- coordgen include dir set as /usr/include -- coordgen libraries set as '/usr/lib/x86_64-linux-gnu/libcoordgen.so' -- coordgen templates file set as '/usr/share/coordgen/templates.mae' -- Coordinate generation with Coordgen will be supported. Using Coordgen libraries at /usr/lib/x86_64-linux-gnu/libcoordgen.so. -- Found PkgConfig: /usr/bin/x86_64-linux-gnu-pkg-config (found version "2.5.1") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.4 -- Found Cairo: /usr/lib/x86_64-linux-gnu/libcairo.so -- Cairo found. PNG output will be supported. -- Found Doxygen: /usr/bin/doxygen (found version "1.15.0") found components: doxygen dot CMake Warning (dev) at src/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost: missing: system (found /usr/lib/x86_64-linux-gnu/cmake/Boost-1.90.0/BoostConfig.cmake (found suitable version "1.90.0", minimum required is "1.45.0")) -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE CMake Warning (dev) at tools/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: program_options iostreams -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:226 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found version "3.14.7") CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:250 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Found SWIG: /usr/bin/swig (found version "4.5.0") -- Found SWIG: /usr/bin/swig (found suitable version "4.5.0", minimum required is "2.0") CMake Warning (dev) at scripts/CMakeLists.txt:41 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at scripts/CMakeLists.txt:50 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.14.so (found version "3.14.7") -- Python bindings will be compiled -- Found Perl: /usr/bin/perl (found version "5.42.3") -- Found PerlLibs: /usr/lib/x86_64-linux-gnu/libperl.so.5.42 (found version "5.42.3") -- Perl bindings will be compiled -- Configuring done (5.4s) -- Generating done (0.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED OBPERL_INSTALLDIRS PKGCONFIG_EXECUTABLE -- Build files have been written to: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir make[1]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg' dh_auto_build cd builddir && make -j2 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' /usr/bin/cmake -S/build/openbabel-7yTj35/openbabel-3.1.1+dfsg -B/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/CMakeFiles /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/CMakeFiles/openbabel.dir/DependInfo.cmake "--color=" openbabel make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF CMakeFiles/openbabel.dir/atom.cpp.o.d -o CMakeFiles/openbabel.dir/atom.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/atom.cpp cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF CMakeFiles/openbabel.dir/alias.cpp.o.d -o CMakeFiles/openbabel.dir/alias.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/alias.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/alias.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/alias.cpp:16: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF CMakeFiles/openbabel.dir/base.cpp.o.d -o CMakeFiles/openbabel.dir/base.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/base.cpp [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bitvec.cpp.o -MF CMakeFiles/openbabel.dir/bitvec.cpp.o.d -o CMakeFiles/openbabel.dir/bitvec.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/bitvec.cpp [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bond.cpp.o -MF CMakeFiles/openbabel.dir/bond.cpp.o.d -o CMakeFiles/openbabel.dir/bond.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/bond.cpp [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ 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/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/builder.cpp:31: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/builder.h:23, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/builder.cpp:22: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS 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/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprint.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/fingerprint.h:28, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprint.cpp:27: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprint.cpp:21: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL 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/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/stl_tree.h:65, from /usr/include/c++/16/set:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefield.cpp:22: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF CMakeFiles/openbabel.dir/format.cpp.o.d -o CMakeFiles/openbabel.dir/format.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/format.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/format.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/dlhandler.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF CMakeFiles/openbabel.dir/generic.cpp.o.d -o CMakeFiles/openbabel.dir/generic.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/generic.cpp [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o CMakeFiles/openbabel.dir/graphsym.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/graphsym.cpp [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF CMakeFiles/openbabel.dir/grid.cpp.o.d -o CMakeFiles/openbabel.dir/grid.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/grid.cpp [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ 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/usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF CMakeFiles/openbabel.dir/locale.cpp.o.d -o CMakeFiles/openbabel.dir/locale.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/locale.cpp [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF CMakeFiles/openbabel.dir/matrix.cpp.o.d -o CMakeFiles/openbabel.dir/matrix.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/matrix.cpp [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/mcdlutil.cpp [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o CMakeFiles/openbabel.dir/molchrg.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/molchrg.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/mcdlutil.cpp:27: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/mcdlutil.cpp:22: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF 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src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/obconversion.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/obconversion.cpp:48: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from 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CMakeFiles/openbabel.dir/query.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/query.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/query.cpp:29: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/base.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/bond.h:31, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/query.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/query.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF CMakeFiles/openbabel.dir/ring.cpp.o.d -o CMakeFiles/openbabel.dir/ring.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ring.cpp [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/rotamer.cpp [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF CMakeFiles/openbabel.dir/rotor.cpp.o.d -o CMakeFiles/openbabel.dir/rotor.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/rotor.cpp [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/spectrophore.cpp [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/tautomer.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/tautomer.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/tautomer.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/tautomer.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/tokenst.cpp [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/transform.cpp [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/typer.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/descriptor.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/transform.cpp:23: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/transform.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/obmolecformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/obmolecformat.cpp:19: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o 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/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/math/transform3d.cpp [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include 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-D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/cistrans.cpp [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/perception.cpp [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/facade.cpp /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/perception.cpp: In function ‘void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/perception.cpp:2973:16: warning: ‘template class std::binder1st’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/base.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/stereo/stereo.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/stereo/tetranonplanar.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/stereo/tetrahedral.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/perception.cpp:26: /usr/include/c++/16/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/perception.cpp:2973:88: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/perception.cpp: In function ‘void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/perception.cpp:3005:16: warning: ‘template class std::binder1st’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^~~~~~~~~ /usr/include/c++/16/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/perception.cpp:3005:93: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/gen3dstereohelper.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/gen3dstereohelper.cpp:29: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/gen3dstereohelper.h:28, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/stereo/gen3dstereohelper.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 14%] Linking CXX shared library ../lib/x86_64-linux-gnu/libopenbabel.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/openbabel.dir/link.d -Wl,-soname,libopenbabel.so.7 -o ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 CMakeFiles/openbabel.dir/alias.cpp.o CMakeFiles/openbabel.dir/atom.cpp.o CMakeFiles/openbabel.dir/base.cpp.o CMakeFiles/openbabel.dir/bitvec.cpp.o CMakeFiles/openbabel.dir/bond.cpp.o CMakeFiles/openbabel.dir/bondtyper.cpp.o CMakeFiles/openbabel.dir/builder.cpp.o CMakeFiles/openbabel.dir/canon.cpp.o CMakeFiles/openbabel.dir/chains.cpp.o CMakeFiles/openbabel.dir/chargemodel.cpp.o CMakeFiles/openbabel.dir/data.cpp.o CMakeFiles/openbabel.dir/data_utilities.cpp.o CMakeFiles/openbabel.dir/descriptor.cpp.o CMakeFiles/openbabel.dir/elements.cpp.o CMakeFiles/openbabel.dir/fingerprint.cpp.o CMakeFiles/openbabel.dir/forcefield.cpp.o CMakeFiles/openbabel.dir/format.cpp.o CMakeFiles/openbabel.dir/generic.cpp.o CMakeFiles/openbabel.dir/graphsym.cpp.o CMakeFiles/openbabel.dir/grid.cpp.o CMakeFiles/openbabel.dir/griddata.cpp.o CMakeFiles/openbabel.dir/isomorphism.cpp.o CMakeFiles/openbabel.dir/kekulize.cpp.o CMakeFiles/openbabel.dir/locale.cpp.o CMakeFiles/openbabel.dir/matrix.cpp.o CMakeFiles/openbabel.dir/mcdlutil.cpp.o CMakeFiles/openbabel.dir/molchrg.cpp.o CMakeFiles/openbabel.dir/mol.cpp.o CMakeFiles/openbabel.dir/obconversion.cpp.o CMakeFiles/openbabel.dir/oberror.cpp.o CMakeFiles/openbabel.dir/obfunctions.cpp.o CMakeFiles/openbabel.dir/obiter.cpp.o CMakeFiles/openbabel.dir/obutil.cpp.o CMakeFiles/openbabel.dir/op.cpp.o CMakeFiles/openbabel.dir/parsmart.cpp.o CMakeFiles/openbabel.dir/patty.cpp.o CMakeFiles/openbabel.dir/phmodel.cpp.o CMakeFiles/openbabel.dir/plugin.cpp.o CMakeFiles/openbabel.dir/pointgroup.cpp.o CMakeFiles/openbabel.dir/query.cpp.o CMakeFiles/openbabel.dir/rand.cpp.o CMakeFiles/openbabel.dir/reactionfacade.cpp.o CMakeFiles/openbabel.dir/residue.cpp.o CMakeFiles/openbabel.dir/ring.cpp.o CMakeFiles/openbabel.dir/rotamer.cpp.o CMakeFiles/openbabel.dir/rotor.cpp.o CMakeFiles/openbabel.dir/spectrophore.cpp.o CMakeFiles/openbabel.dir/tautomer.cpp.o CMakeFiles/openbabel.dir/tokenst.cpp.o CMakeFiles/openbabel.dir/transform.cpp.o CMakeFiles/openbabel.dir/typer.cpp.o CMakeFiles/openbabel.dir/obmolecformat.cpp.o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o CMakeFiles/openbabel.dir/depict/depict.cpp.o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o CMakeFiles/openbabel.dir/math/transform3d.cpp.o CMakeFiles/openbabel.dir/math/vector3.cpp.o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o CMakeFiles/openbabel.dir/stereo/perception.cpp.o CMakeFiles/openbabel.dir/stereo/facade.cpp.o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_symlink_library ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 ../lib/x86_64-linux-gnu/libopenbabel.so.7 ../lib/x86_64-linux-gnu/libopenbabel.so make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 14%] Built target openbabel make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake "--color=" plugin_descriptors make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake "--color=" plugin_fingerprints make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 14%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o [ 14%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/cansmidescriptor.cpp cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprints/finger2.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/cansmidescriptor.cpp:22: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/oberror.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/cansmidescriptor.cpp:20: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/fingerprint.h:28, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprints/finger2.cpp:24: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/oberror.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprints/finger2.cpp:20: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/cmpdfilter.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/descriptor.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/cmpdfilter.cpp:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/oberror.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/cmpdfilter.cpp:20: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprints/finger3.cpp [ 15%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/groupcontrib.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/fingerprint.h:28, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprints/finger3.cpp:27: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprints/finger3.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/descriptor.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/groupcontrib.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/groupcontrib.cpp:33: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/groupcontrib.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/filters.cpp [ 15%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprints/fingerecfp.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/descriptor.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/filters.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/descriptor.h:22: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/fingerprint.h:28, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprints/fingerecfp.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/oberror.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/fingerprints/fingerecfp.cpp:15: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/inchidescriptor.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/inchiformat.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/inchidescriptor.cpp:24: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/inchidescriptor.cpp:22: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/oberror.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/inchidescriptor.cpp:20: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/inchiformat.h:134:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 15%] Linking CXX shared module ../lib/x86_64-linux-gnu/plugin_fingerprints.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/plugin_fingerprints.dir/link.d -o ../lib/x86_64-linux-gnu/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 15%] Built target plugin_fingerprints make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake "--color=" plugin_forcefields make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 16%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefieldgaff.cpp [ 16%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/smartsdescriptors.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/forcefield.h:28, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefieldgaff.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefieldgaff.cpp:29: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefieldgaff.cpp:21: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/descriptor.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/smartsdescriptors.cpp:22: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/oberror.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/descriptors/smartsdescriptors.cpp:20: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 17%] Linking CXX shared module ../lib/x86_64-linux-gnu/plugin_descriptors.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/plugin_descriptors.dir/link.d -o ../lib/x86_64-linux-gnu/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 17%] Built target plugin_descriptors make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake "--color=" plugin_ops make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 17%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addfilename.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addfilename.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addfilename.cpp:18: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addinindex.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addinindex.cpp:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/base.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addinindex.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addpolarh.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addpolarh.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addpolarh.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addnonpolarh.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addnonpolarh.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/addnonpolarh.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefieldghemical.cpp [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/canonical.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/forcefield.h:28, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefieldghemical.h:23, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefieldghemical.cpp:23: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefieldghemical.cpp:20: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/canonical.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/changecell.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/changecell.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/changecell.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/delpolarh.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/delpolarh.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/delpolarh.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/delnonpolarh.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/delnonpolarh.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/delnonpolarh.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/gen2D.cpp [ 18%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefieldmmff94.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/gen2D.cpp:22: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/gen2D.cpp:21: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/fillUC.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/fillUC.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/forcefield.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/forcefield.cpp:31: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/forcefield.cpp:29: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/gen3d.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/gen3d.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/largest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/largest.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefielduff.cpp [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/loader.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/loader.cpp:24: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/loader.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/forcefield.h:28, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefielduff.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefielduff.cpp:32: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/forcefields/forcefielduff.cpp:21: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/neutralize.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/neutralize.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/opsplit.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/opsplit.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/optransform.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/optransform.h:21, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/optransform.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/parsmart.h:23, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/phmodel.h:23, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/optransform.h:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 21%] Linking CXX shared module ../lib/x86_64-linux-gnu/plugin_forcefields.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/plugin_forcefields.dir/link.d -o ../lib/x86_64-linux-gnu/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 21%] Built target plugin_forcefields make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake "--color=" plugin_charges make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/eem.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/chargemodel.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/eem.cpp:24: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/eem.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/partialcharges.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/partialcharges.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/readconformers.cpp [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/gasteiger.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/readconformers.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/chargemodel.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/gasteiger.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/dlhandler.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/none.cpp [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/sort.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/chargemodel.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/none.cpp:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/dlhandler.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/sort.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/sort.cpp:32:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 32 | struct Order : public std::binary_function, std::pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/mmff94.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/chargemodel.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/mmff94.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/dlhandler.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/fromfile.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/fromfile.cpp:31: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/chargemodel.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/charges/fromfile.cpp:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/dlhandler.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/opisomorph.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/opisomorph.h:15, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/opisomorph.cpp:17: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/parsmart.h:23, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/opisomorph.cpp:15: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 23%] Linking CXX shared module ../lib/x86_64-linux-gnu/plugin_charges.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/plugin_charges.dir/link.d -o ../lib/x86_64-linux-gnu/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 23%] Built target plugin_charges make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake "--color=" smilesformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 23%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/smilesformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/smilesformat.cpp:23: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/ophighlight.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/ophighlight.cpp:17: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/parsmart.h:23, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/ophighlight.cpp:16: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/xout.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/xout.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 23%] Linking CXX shared module ../lib/x86_64-linux-gnu/plugin_ops.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/plugin_ops.dir/link.d -o ../lib/x86_64-linux-gnu/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 23%] Built target plugin_ops make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake "--color=" mdlformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 23%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mdlformat.cpp /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/smilesformat.cpp:2865:35: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2865 | snprintf(tcount, 10, "%d", hcount); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/smilesformat.cpp:2865:19: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/smilesformat.cpp:2857:35: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2857 | snprintf(tcount, 10, "%d", i); | ^ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/smilesformat.cpp:2857:19: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mdlformat.cpp:35: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mdlformat.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mdlformat.cpp: In member function ‘std::string OpenBabel::MDLFormat::GetTimeDate()’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mdlformat.cpp:1709:27: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=] 1709 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mdlformat.cpp:1709:22: note: directive argument in the range [-2147483648, 2147483547] 1709 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/iomanip:47, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mdlformat.cpp:27: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘std::string OpenBabel::MDLFormat::GetTimeDate()’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mdlformat.cpp:1709:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 11 and 56 bytes into a destination of size 11 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 23%] Linking CXX shared module ../../lib/x86_64-linux-gnu/smilesformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/smilesformat.dir/link.d -o ../../lib/x86_64-linux-gnu/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 23%] Built target smilesformat make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake "--color=" mol2format make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 23%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mol2format.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mol2format.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 23%] Linking CXX shared module ../../lib/x86_64-linux-gnu/mdlformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mdlformat.dir/link.d -o ../../lib/x86_64-linux-gnu/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 23%] Built target mdlformat make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake "--color=" pdbformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 23%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 24%] Linking CXX shared module ../../lib/x86_64-linux-gnu/mol2format.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mol2format.dir/link.d -o ../../lib/x86_64-linux-gnu/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 24%] Built target mol2format make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake "--color=" inchiformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 24%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/inchiformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/inchiformat.cpp:24: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/inchiformat.cpp:23: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/inchiformat.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/inchiformat.cpp:32: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/inchiformat.h:134:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:684:58: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 684 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:684:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:702:70: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 702 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:702:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:739:35: warning: ‘%+d’ directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:739:34: note: directive argument in the range [-32768, 32767] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:739:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 3 and 7 bytes into a destination of size 3 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/16/bits/c++allocator.h:33, from /usr/include/c++/16/bits/allocator.h:46, from /usr/include/c++/16/string:46: In member function ‘constexpr void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::__cxx11::basic_string]’, inlined from ‘constexpr void std::allocator< >::deallocate(_Tp*, std::size_t) [with _Tp = std::__cxx11::basic_string]’ at /usr/include/c++/16/bits/allocator.h:218:35, inlined from ‘static constexpr void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::__cxx11::basic_string]’ at /usr/include/c++/16/bits/alloc_traits.h:689:23, inlined from ‘constexpr void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ at /usr/include/c++/16/bits/stl_vector.h:398:19, inlined from ‘constexpr void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ at /usr/include/c++/16/bits/stl_vector.h:394:7, inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ at /usr/include/c++/16/bits/stl_vector.h:378:15, inlined from ‘constexpr std::vector<_Tp, _Alloc>::~vector() [with _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ at /usr/include/c++/16/bits/stl_vector.h:795:7, inlined from ‘void OpenBabel::fixRhombohedralSpaceGroupWriter(std::string&)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:849:3, inlined from ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:606:42: /usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘__result’ with nonzero offset 32 [-Wfree-nonheap-object] 183 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbformat.cpp:509:8: note: declared here 509 | bool PDBFormat::WriteMolecule(OBBase* pOb, OBConversion* pConv) | ^~~~~~~~~ [ 25%] Linking CXX shared module ../../lib/x86_64-linux-gnu/pdbformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/pdbformat.dir/link.d -o ../../lib/x86_64-linux-gnu/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 25%] Built target pdbformat make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake "--color=" asciiformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 26%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/asciiformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/asciiformat.cpp:19: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 26%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/getinchi.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 27%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/unique.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/inchiformat.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/unique.cpp:23: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/ops/unique.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/op.h:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 27%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/depict/asciipainter.cpp /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/inchiformat.h:134:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 27%] Linking CXX shared module ../../lib/x86_64-linux-gnu/inchiformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/inchiformat.dir/link.d -o ../../lib/x86_64-linux-gnu/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 27%] Built target inchiformat make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake "--color=" copyformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 27%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/copyformat.cpp [ 27%] Linking CXX shared module ../../lib/x86_64-linux-gnu/asciiformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/asciiformat.dir/link.d -o ../../lib/x86_64-linux-gnu/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.cpp.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 27%] Built target asciiformat make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake "--color=" MNAformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 27%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/MNAformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/MNAformat.cpp:31: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/copyformat.cpp:14: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 27%] Linking CXX shared module ../../lib/x86_64-linux-gnu/copyformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/copyformat.dir/link.d -o ../../lib/x86_64-linux-gnu/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 27%] Built target copyformat make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake "--color=" molreport make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 28%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -MF CMakeFiles/molreport.dir/molreport.cpp.o.d -o CMakeFiles/molreport.dir/molreport.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/molreport.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/molreport.cpp:21: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 28%] Linking CXX shared module ../../lib/x86_64-linux-gnu/molreport.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/molreport.dir/link.d -o ../../lib/x86_64-linux-gnu/molreport.so CMakeFiles/molreport.dir/molreport.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 28%] Built target molreport make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake "--color=" nulformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 28%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/nulformat.cpp [ 28%] Linking CXX shared module ../../lib/x86_64-linux-gnu/MNAformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/MNAformat.dir/link.d -o ../../lib/x86_64-linux-gnu/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 28%] Built target MNAformat make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake "--color=" painterformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 28%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/painterformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/painterformat.cpp:19: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/nulformat.cpp:14: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 28%] Linking CXX shared module ../../lib/x86_64-linux-gnu/nulformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/nulformat.dir/link.d -o ../../lib/x86_64-linux-gnu/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 28%] Built target nulformat [ 29%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/depict/commandpainter.cpp make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake "--color=" povrayformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 30%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/povrayformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/povrayformat.cpp:23: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 30%] Linking CXX shared module ../../lib/x86_64-linux-gnu/painterformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/painterformat.dir/link.d -o ../../lib/x86_64-linux-gnu/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 30%] Built target painterformat make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake "--color=" reportformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 30%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/reportformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/reportformat.cpp:23: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/povrayformat.cpp:18: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/povrayformat.cpp: In function ‘void OpenBabel::OutputCSTBonds(std::ostream&, OBMol&, std::string)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/povrayformat.cpp:526:78: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 526 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594: /usr/include/c++/16/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/povrayformat.cpp:587:78: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 587 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 30%] Linking CXX shared module ../../lib/x86_64-linux-gnu/reportformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/reportformat.dir/link.d -o ../../lib/x86_64-linux-gnu/reportformat.so CMakeFiles/reportformat.dir/reportformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 30%] Built target reportformat make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake "--color=" svgformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 30%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/svgformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/svgformat.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 30%] Linking CXX shared module ../../lib/x86_64-linux-gnu/povrayformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/povrayformat.dir/link.d -o ../../lib/x86_64-linux-gnu/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 30%] Built target povrayformat make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake "--color=" textformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 30%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtextformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF CMakeFiles/textformat.dir/textformat.cpp.o.d -o CMakeFiles/textformat.dir/textformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/textformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/textformat.cpp:14: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 30%] Linking CXX shared module ../../lib/x86_64-linux-gnu/textformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/textformat.dir/link.d -o ../../lib/x86_64-linux-gnu/textformat.so CMakeFiles/textformat.dir/textformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 30%] Built target textformat make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake "--color=" titleformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 30%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/titleformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/titleformat.cpp:19: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 31%] Linking CXX shared module ../../lib/x86_64-linux-gnu/svgformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/svgformat.dir/link.d -o ../../lib/x86_64-linux-gnu/svgformat.so CMakeFiles/svgformat.dir/svgformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 31%] Built target svgformat make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake "--color=" pngformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 31%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpngformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o CMakeFiles/pngformat.dir/pngformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pngformat.cpp [ 32%] Linking CXX shared module ../../lib/x86_64-linux-gnu/titleformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/titleformat.dir/link.d -o ../../lib/x86_64-linux-gnu/titleformat.so CMakeFiles/titleformat.dir/titleformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 32%] Built target titleformat make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake "--color=" acesformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 32%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacesformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/acesformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/acesformat.cpp:20: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pngformat.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pngformat.cpp:13: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Linking CXX shared module ../../lib/x86_64-linux-gnu/pngformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/pngformat.dir/link.d -o ../../lib/x86_64-linux-gnu/pngformat.so CMakeFiles/pngformat.dir/pngformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Built target pngformat make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake "--color=" abinitformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/abinitformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/abinitformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Linking CXX shared module ../../lib/x86_64-linux-gnu/acesformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/acesformat.dir/link.d -o ../../lib/x86_64-linux-gnu/acesformat.so CMakeFiles/acesformat.dir/acesformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Built target acesformat make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake "--color=" adfformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dadfformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o CMakeFiles/adfformat.dir/adfformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/adfformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/adfformat.cpp:36: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/adfformat.cpp:35: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/adfformat.cpp:29: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Linking CXX shared module ../../lib/x86_64-linux-gnu/abinitformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/abinitformat.dir/link.d -o ../../lib/x86_64-linux-gnu/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Built target abinitformat make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake "--color=" aoforceformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/aoforceformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/aoforceformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Linking CXX shared module ../../lib/x86_64-linux-gnu/aoforceformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/aoforceformat.dir/link.d -o ../../lib/x86_64-linux-gnu/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Built target aoforceformat make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake "--color=" castepformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/castepformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/castepformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Linking CXX shared module ../../lib/x86_64-linux-gnu/adfformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/adfformat.dir/link.d -o ../../lib/x86_64-linux-gnu/adfformat.so CMakeFiles/adfformat.dir/adfformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Built target adfformat make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake "--color=" crystal09format make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/crystal09format.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/crystal09format.cpp:21: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/algorithm:62, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/crystal09format.cpp:14: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Linking CXX shared module ../../lib/x86_64-linux-gnu/castepformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/castepformat.dir/link.d -o ../../lib/x86_64-linux-gnu/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 33%] Built target castepformat make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake "--color=" daltonformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 34%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/daltonformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/daltonformat.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 34%] Linking CXX shared module ../../lib/x86_64-linux-gnu/daltonformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 [ 34%] Linking CXX shared module ../../lib/x86_64-linux-gnu/crystal09format.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/daltonformat.dir/link.d -o ../../lib/x86_64-linux-gnu/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 34%] Built target daltonformat make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake "--color=" dmolformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/crystal09format.dir/link.d -o ../../lib/x86_64-linux-gnu/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 [ 35%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/dmolformat.cpp [ 35%] Built target crystal09format make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake "--color=" fchkformat In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/dmolformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 35%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfchkformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fchkformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fchkformat.cpp:25: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fchkformat.cpp:24: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/numeric:77, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fchkformat.cpp:14: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fchkformat.cpp: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fchkformat.cpp:668:43: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less_equal; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 668 | bind2nd(less_equal(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fchkformat.cpp:671:43: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 671 | bind2nd(greater(), MxBond)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fchkformat.cpp:674:43: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 674 | bind2nd(less(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fchkformat.cpp:677:43: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 677 | bind2nd(greater(), Natoms))) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ [ 35%] Linking CXX shared module ../../lib/x86_64-linux-gnu/dmolformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/dmolformat.dir/link.d -o ../../lib/x86_64-linux-gnu/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 35%] Built target dmolformat make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake "--color=" fhiaimsformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 35%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fhiaimsformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fhiaimsformat.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Linking CXX shared module ../../lib/x86_64-linux-gnu/fchkformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 [ 36%] Linking CXX shared module ../../lib/x86_64-linux-gnu/fhiaimsformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/fhiaimsformat.dir/link.d -o ../../lib/x86_64-linux-gnu/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/fchkformat.dir/link.d -o ../../lib/x86_64-linux-gnu/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 36%] Built target fhiaimsformat [ 36%] Built target fchkformat make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake "--color=" gamessformat make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake "--color=" gaussformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 36%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gamessformat.cpp [ 36%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gaussformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gamessformat.cpp:19: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gaussformat.cpp:19: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/data.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gaussformat.cpp:17: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 36%] Linking CXX shared module ../../lib/x86_64-linux-gnu/gamessformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/gamessformat.dir/link.d -o ../../lib/x86_64-linux-gnu/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 36%] Built target gamessformat make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake "--color=" gausscubeformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 36%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gausscubeformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gausscubeformat.cpp:29: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gausscubeformat.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Linking CXX shared module ../../lib/x86_64-linux-gnu/gaussformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/gaussformat.dir/link.d -o ../../lib/x86_64-linux-gnu/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 37%] Built target gaussformat make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake "--color=" gausszmatformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 37%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -MF CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o.d -o CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gausszmatformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gausszmatformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Linking CXX shared module ../../lib/x86_64-linux-gnu/gausscubeformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/gausscubeformat.dir/link.d -o ../../lib/x86_64-linux-gnu/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 37%] Built target gausscubeformat make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake "--color=" gulpformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 37%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgulpformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o -MF CMakeFiles/gulpformat.dir/gulpformat.cpp.o.d -o CMakeFiles/gulpformat.dir/gulpformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gulpformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gulpformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 37%] Linking CXX shared module ../../lib/x86_64-linux-gnu/gausszmatformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/gausszmatformat.dir/link.d -o ../../lib/x86_64-linux-gnu/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 37%] Built target gausszmatformat make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake "--color=" hinformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 37%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -MF CMakeFiles/hinformat.dir/hinformat.cpp.o.d -o CMakeFiles/hinformat.dir/hinformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/hinformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/hinformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Linking CXX shared module ../../lib/x86_64-linux-gnu/hinformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 [ 38%] Linking CXX shared module ../../lib/x86_64-linux-gnu/gulpformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/hinformat.dir/link.d -o ../../lib/x86_64-linux-gnu/hinformat.so CMakeFiles/hinformat.dir/hinformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 38%] Built target hinformat make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake "--color=" jaguarformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 38%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Djaguarformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -MF CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o.d -o CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/jaguarformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/jaguarformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/gulpformat.dir/link.d -o ../../lib/x86_64-linux-gnu/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 38%] Built target gulpformat make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake "--color=" molproformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 38%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolproformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -MF CMakeFiles/molproformat.dir/molproformat.cpp.o.d -o CMakeFiles/molproformat.dir/molproformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/molproformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/molproformat.cpp:20: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 38%] Linking CXX shared module ../../lib/x86_64-linux-gnu/jaguarformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/jaguarformat.dir/link.d -o ../../lib/x86_64-linux-gnu/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 38%] Built target jaguarformat make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake "--color=" mopacformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 38%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmopacformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o -MF CMakeFiles/mopacformat.dir/mopacformat.cpp.o.d -o CMakeFiles/mopacformat.dir/mopacformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mopacformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mopacformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 38%] Linking CXX shared module ../../lib/x86_64-linux-gnu/molproformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/molproformat.dir/link.d -o ../../lib/x86_64-linux-gnu/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 38%] Built target molproformat make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake "--color=" nwchemformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 38%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnwchemformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -MF CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o.d -o CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/nwchemformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/nwchemformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 38%] Linking CXX shared module ../../lib/x86_64-linux-gnu/mopacformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mopacformat.dir/link.d -o ../../lib/x86_64-linux-gnu/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 38%] Built target mopacformat make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake "--color=" pwscfformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 38%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpwscfformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -MF CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o.d -o CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pwscfformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pwscfformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 39%] Linking CXX shared module ../../lib/x86_64-linux-gnu/nwchemformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/nwchemformat.dir/link.d -o ../../lib/x86_64-linux-gnu/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 39%] Built target nwchemformat make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake "--color=" qchemformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 39%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -MF CMakeFiles/qchemformat.dir/qchemformat.cpp.o.d -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/qchemformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/qchemformat.cpp:18: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/qchemformat.cpp:16: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Linking CXX shared module ../../lib/x86_64-linux-gnu/pwscfformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/pwscfformat.dir/link.d -o ../../lib/x86_64-linux-gnu/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 40%] Built target pwscfformat make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake "--color=" siestaformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 40%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/siestaformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/siestaformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Linking CXX shared module ../../lib/x86_64-linux-gnu/qchemformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/qchemformat.dir/link.d -o ../../lib/x86_64-linux-gnu/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 40%] Built target qchemformat make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake "--color=" turbomoleformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 40%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/turbomoleformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/turbomoleformat.cpp:18: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Linking CXX shared module ../../lib/x86_64-linux-gnu/siestaformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/siestaformat.dir/link.d -o ../../lib/x86_64-linux-gnu/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 40%] Built target siestaformat make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake "--color=" vaspformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 41%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/vaspformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/vaspformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 41%] Linking CXX shared module ../../lib/x86_64-linux-gnu/turbomoleformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/turbomoleformat.dir/link.d -o ../../lib/x86_64-linux-gnu/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 41%] Built target turbomoleformat make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake "--color=" xsfformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 41%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxsfformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xsfformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xsfformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/vaspformat.cpp:535:35: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = not_equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 535 | std::bind2nd(std::not_equal_to(), 0.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/vaspformat.cpp:589:36: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 589 | std::bind2nd(std::divides(), max / 100.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ [ 41%] Linking CXX shared module ../../lib/x86_64-linux-gnu/xsfformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/xsfformat.dir/link.d -o ../../lib/x86_64-linux-gnu/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 41%] Built target xsfformat make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake "--color=" zindoformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 41%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dzindoformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/zindoformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/zindoformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Linking CXX shared module ../../lib/x86_64-linux-gnu/zindoformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/zindoformat.dir/link.d -o ../../lib/x86_64-linux-gnu/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 42%] Built target zindoformat make -f src/formats/CMakeFiles/maeformat.dir/build.make src/formats/CMakeFiles/maeformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/maeformat.dir/DependInfo.cmake "--color=" maeformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/maeformat.dir/build.make src/formats/CMakeFiles/maeformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 42%] Building CXX object src/formats/CMakeFiles/maeformat.dir/maeformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/maeformat.dir/maeformat.cpp.o -MF CMakeFiles/maeformat.dir/maeformat.cpp.o.d -o CMakeFiles/maeformat.dir/maeformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/maeformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/maeformat.cpp:19: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Linking CXX shared module ../../lib/x86_64-linux-gnu/vaspformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/vaspformat.dir/link.d -o ../../lib/x86_64-linux-gnu/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 42%] Built target vaspformat make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake "--color=" gamessukformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 42%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessukformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gamessukformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gamessukformat.cpp:14: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Linking CXX shared module ../../lib/x86_64-linux-gnu/maeformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/maeformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/maeformat.dir/link.d -o ../../lib/x86_64-linux-gnu/maeformat.so CMakeFiles/maeformat.dir/maeformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 42%] Built target maeformat make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake "--color=" orcaformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 42%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dorcaformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/orcaformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/orcaformat.cpp:18: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 43%] Linking CXX shared module ../../lib/x86_64-linux-gnu/gamessukformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/gamessukformat.dir/link.d -o ../../lib/x86_64-linux-gnu/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 43%] Built target gamessukformat make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake "--color=" APIInterface make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 43%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/APIInterface.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/APIInterface.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 43%] Linking CXX shared module ../../lib/x86_64-linux-gnu/APIInterface.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/APIInterface.dir/link.d -o ../../lib/x86_64-linux-gnu/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 43%] Built target APIInterface make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake "--color=" CSRformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 43%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/CSRformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/CSRformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 43%] Linking CXX shared module ../../lib/x86_64-linux-gnu/CSRformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/CSRformat.dir/link.d -o ../../lib/x86_64-linux-gnu/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 43%] Built target CSRformat make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake "--color=" PQSformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 43%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/PQSformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/PQSformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 44%] Linking CXX shared module ../../lib/x86_64-linux-gnu/orcaformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/orcaformat.dir/link.d -o ../../lib/x86_64-linux-gnu/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 44%] Built target orcaformat make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake "--color=" MCDLformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 45%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/MCDLformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/MCDLformat.cpp:21: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 46%] Linking CXX shared module ../../lib/x86_64-linux-gnu/PQSformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/PQSformat.dir/link.d -o ../../lib/x86_64-linux-gnu/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 46%] Built target PQSformat make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake "--color=" alchemyformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 46%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/alchemyformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/alchemyformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 47%] Linking CXX shared module ../../lib/x86_64-linux-gnu/alchemyformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/alchemyformat.dir/link.d -o ../../lib/x86_64-linux-gnu/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 47%] Built target alchemyformat make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake "--color=" acrformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 48%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o CMakeFiles/acrformat.dir/acrformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/acrformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/acrformat.cpp:26: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/acrformat.cpp:23: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 48%] Linking CXX shared module ../../lib/x86_64-linux-gnu/acrformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/acrformat.dir/link.d -o ../../lib/x86_64-linux-gnu/acrformat.so CMakeFiles/acrformat.dir/acrformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 48%] Built target acrformat make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake "--color=" amberformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 48%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o CMakeFiles/amberformat.dir/amberformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/amberformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/amberformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 48%] Linking CXX shared module ../../lib/x86_64-linux-gnu/amberformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/amberformat.dir/link.d -o ../../lib/x86_64-linux-gnu/amberformat.so CMakeFiles/amberformat.dir/amberformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 48%] Built target amberformat make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend [ 48%] Linking CXX shared module ../../lib/x86_64-linux-gnu/MCDLformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1 make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake "--color=" balstformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 48%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbalstformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o CMakeFiles/balstformat.dir/balstformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/balstformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/balstformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/MCDLformat.dir/link.d -o ../../lib/x86_64-linux-gnu/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 48%] Built target MCDLformat make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake "--color=" bgfformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 48%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbgfformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/bgfformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/bgfformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Linking CXX shared module ../../lib/x86_64-linux-gnu/balstformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/balstformat.dir/link.d -o ../../lib/x86_64-linux-gnu/balstformat.so CMakeFiles/balstformat.dir/balstformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 49%] Built target balstformat make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake "--color=" boxformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 49%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/boxformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/boxformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 49%] Linking CXX shared module ../../lib/x86_64-linux-gnu/bgfformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/bgfformat.dir/link.d -o ../../lib/x86_64-linux-gnu/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 49%] Built target bgfformat make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake "--color=" cacaoformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 49%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacaoformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cacaoformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cacaoformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 50%] Linking CXX shared module ../../lib/x86_64-linux-gnu/boxformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/boxformat.dir/link.d -o ../../lib/x86_64-linux-gnu/boxformat.so CMakeFiles/boxformat.dir/boxformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 50%] Built target boxformat make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake "--color=" cacheformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 50%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacheformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cacheformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cacheformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 50%] Linking CXX shared module ../../lib/x86_64-linux-gnu/cacaoformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/cacaoformat.dir/link.d -o ../../lib/x86_64-linux-gnu/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 50%] Built target cacaoformat make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake "--color=" carformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 51%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcarformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -MF CMakeFiles/carformat.dir/carformat.cpp.o.d -o CMakeFiles/carformat.dir/carformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/carformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/carformat.cpp:18: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 51%] Linking CXX shared module ../../lib/x86_64-linux-gnu/cacheformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/cacheformat.dir/link.d -o ../../lib/x86_64-linux-gnu/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 51%] Built target cacheformat make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake "--color=" cccformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 51%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcccformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -MF CMakeFiles/cccformat.dir/cccformat.cpp.o.d -o CMakeFiles/cccformat.dir/cccformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cccformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cccformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 52%] Linking CXX shared module ../../lib/x86_64-linux-gnu/cccformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 [ 52%] Linking CXX shared module ../../lib/x86_64-linux-gnu/carformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/cccformat.dir/link.d -o ../../lib/x86_64-linux-gnu/cccformat.so CMakeFiles/cccformat.dir/cccformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 52%] Built target cccformat make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake "--color=" chem3dformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 52%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchem3dformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -MF CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o.d -o CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chem3dformat.cpp /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/carformat.dir/link.d -o ../../lib/x86_64-linux-gnu/carformat.so CMakeFiles/carformat.dir/carformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 52%] Built target carformat make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake "--color=" chemdrawct make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 52%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chemdrawct.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chemdrawct.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chem3dformat.cpp:18: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/math/matrix3x3.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chem3dformat.cpp:17: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 53%] Linking CXX shared module ../../lib/x86_64-linux-gnu/chem3dformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 [ 53%] Linking CXX shared module ../../lib/x86_64-linux-gnu/chemdrawct.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/chem3dformat.dir/link.d -o ../../lib/x86_64-linux-gnu/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 53%] Built target chem3dformat make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake "--color=" chemtoolformat /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/chemdrawct.dir/link.d -o ../../lib/x86_64-linux-gnu/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 53%] Built target chemdrawct make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend [ 54%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake "--color=" cifformat cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -MF CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o.d -o CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chemtoolformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chemtoolformat.cpp:19: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 54%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcifformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o -MF CMakeFiles/cifformat.dir/cifformat.cpp.o.d -o CMakeFiles/cifformat.dir/cifformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cifformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cifformat.cpp:24: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 54%] Linking CXX shared module ../../lib/x86_64-linux-gnu/chemtoolformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/chemtoolformat.dir/link.d -o ../../lib/x86_64-linux-gnu/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 54%] Built target chemtoolformat make -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake "--color=" cofformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 55%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcofformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -MF CMakeFiles/cofformat.dir/cofformat.cpp.o.d -o CMakeFiles/cofformat.dir/cofformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cofformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cofformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 55%] Linking CXX shared module ../../lib/x86_64-linux-gnu/cofformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cofformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/cofformat.dir/link.d -o ../../lib/x86_64-linux-gnu/cofformat.so CMakeFiles/cofformat.dir/cofformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 55%] Built target cofformat make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake "--color=" crkformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 55%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrkformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o -MF CMakeFiles/crkformat.dir/crkformat.cpp.o.d -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/crkformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/crkformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 56%] Linking CXX shared module ../../lib/x86_64-linux-gnu/crkformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/crkformat.dir/link.d -o ../../lib/x86_64-linux-gnu/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 56%] Built target crkformat make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake "--color=" cssrformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 56%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcssrformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o -MF CMakeFiles/cssrformat.dir/cssrformat.cpp.o.d -o CMakeFiles/cssrformat.dir/cssrformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cssrformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/cssrformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 56%] Linking CXX shared module ../../lib/x86_64-linux-gnu/cifformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/cifformat.dir/link.d -o ../../lib/x86_64-linux-gnu/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 56%] Built target cifformat make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake "--color=" dlpolyformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 56%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -MF CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o.d -o CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/dlpolyformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/dlpolyformat.cpp:14: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 56%] Linking CXX shared module ../../lib/x86_64-linux-gnu/cssrformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/cssrformat.dir/link.d -o ../../lib/x86_64-linux-gnu/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 56%] Built target cssrformat make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake "--color=" exyzformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 56%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o -MF CMakeFiles/exyzformat.dir/exyzformat.cpp.o.d -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/exyzformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/exyzformat.cpp:18: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 56%] Linking CXX shared module ../../lib/x86_64-linux-gnu/exyzformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/exyzformat.dir/link.d -o ../../lib/x86_64-linux-gnu/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 56%] Built target exyzformat make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake "--color=" fastsearchformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 56%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -MF CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o.d -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fastsearchformat.cpp [ 56%] Linking CXX shared module ../../lib/x86_64-linux-gnu/dlpolyformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/dlpolyformat.dir/link.d -o ../../lib/x86_64-linux-gnu/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 56%] Built target dlpolyformat make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake "--color=" fastaformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 56%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o -MF CMakeFiles/fastaformat.dir/fastaformat.cpp.o.d -o CMakeFiles/fastaformat.dir/fastaformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fastaformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fastaformat.cpp:21: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fastsearchformat.cpp:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fastsearchformat.cpp:16: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 57%] Linking CXX shared module ../../lib/x86_64-linux-gnu/fastaformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/fastaformat.dir/link.d -o ../../lib/x86_64-linux-gnu/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 57%] Built target fastaformat make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake "--color=" featformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 58%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfeatformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/featformat.dir/featformat.cpp.o -MF CMakeFiles/featformat.dir/featformat.cpp.o.d -o CMakeFiles/featformat.dir/featformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/featformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/featformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 58%] Linking CXX shared module ../../lib/x86_64-linux-gnu/fastsearchformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/fastsearchformat.dir/link.d -o ../../lib/x86_64-linux-gnu/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 58%] Built target fastsearchformat make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake "--color=" fhformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 58%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o -MF CMakeFiles/fhformat.dir/fhformat.cpp.o.d -o CMakeFiles/fhformat.dir/fhformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fhformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fhformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 58%] Linking CXX shared module ../../lib/x86_64-linux-gnu/featformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/featformat.dir/link.d -o ../../lib/x86_64-linux-gnu/featformat.so CMakeFiles/featformat.dir/featformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 58%] Built target featformat make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake "--color=" fingerprintformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 58%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -MF CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o.d -o CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fingerprintformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fingerprintformat.cpp:20: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fingerprintformat.cpp:15: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 58%] Linking CXX shared module ../../lib/x86_64-linux-gnu/fhformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/fhformat.dir/link.d -o ../../lib/x86_64-linux-gnu/fhformat.so CMakeFiles/fhformat.dir/fhformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 58%] Built target fhformat make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake "--color=" fpsformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 58%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o -MF CMakeFiles/fpsformat.dir/fpsformat.cpp.o.d -o CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fpsformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fpsformat.cpp:20: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/fpsformat.cpp:15: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 58%] Linking CXX shared module ../../lib/x86_64-linux-gnu/fingerprintformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/fingerprintformat.dir/link.d -o ../../lib/x86_64-linux-gnu/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 58%] Built target fingerprintformat make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake "--color=" freefracformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 59%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfreefracformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o -MF CMakeFiles/freefracformat.dir/freefracformat.cpp.o.d -o CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/freefracformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/freefracformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 59%] Linking CXX shared module ../../lib/x86_64-linux-gnu/fpsformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/fpsformat.dir/link.d -o ../../lib/x86_64-linux-gnu/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 59%] Built target fpsformat make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake "--color=" ghemicalformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 59%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -MF CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o.d -o CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/ghemicalformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/ghemicalformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 59%] Linking CXX shared module ../../lib/x86_64-linux-gnu/freefracformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/freefracformat.dir/link.d -o ../../lib/x86_64-linux-gnu/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 59%] Built target freefracformat make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake "--color=" gromos96format make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 59%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o -MF CMakeFiles/gromos96format.dir/gromos96format.cpp.o.d -o CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gromos96format.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/gromos96format.cpp:54: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 59%] Linking CXX shared module ../../lib/x86_64-linux-gnu/ghemicalformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ghemicalformat.dir/link.d -o ../../lib/x86_64-linux-gnu/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 59%] Built target ghemicalformat make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake "--color=" groformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 60%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/groformat.dir/groformat.cpp.o -MF CMakeFiles/groformat.dir/groformat.cpp.o.d -o CMakeFiles/groformat.dir/groformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/groformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/groformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 60%] Linking CXX shared module ../../lib/x86_64-linux-gnu/gromos96format.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/gromos96format.dir/link.d -o ../../lib/x86_64-linux-gnu/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 60%] Built target gromos96format make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake "--color=" lmpdatformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 60%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -MF CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o.d -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/lmpdatformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/lmpdatformat.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 60%] Linking CXX shared module ../../lib/x86_64-linux-gnu/groformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/groformat.dir/link.d -o ../../lib/x86_64-linux-gnu/groformat.so CMakeFiles/groformat.dir/groformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 60%] Built target groformat make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake "--color=" lpmdformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 60%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -MF CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o.d -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/lpmdformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/lpmdformat.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 61%] Linking CXX shared module ../../lib/x86_64-linux-gnu/lmpdatformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/lmpdatformat.dir/link.d -o ../../lib/x86_64-linux-gnu/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 61%] Built target lmpdatformat make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake "--color=" mdffformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 62%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdffformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o -MF CMakeFiles/mdffformat.dir/mdffformat.cpp.o.d -o CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mdffformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mdffformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 62%] Linking CXX shared module ../../lib/x86_64-linux-gnu/lpmdformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/lpmdformat.dir/link.d -o ../../lib/x86_64-linux-gnu/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 62%] Built target lpmdformat make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake "--color=" mmcifformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 63%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -MF CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o.d -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mmcifformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mmcifformat.cpp:19: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 63%] Linking CXX shared module ../../lib/x86_64-linux-gnu/mdffformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdffformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mdffformat.dir/link.d -o ../../lib/x86_64-linux-gnu/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 63%] Built target mdffformat make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake "--color=" mmodformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 63%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmodformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o -MF CMakeFiles/mmodformat.dir/mmodformat.cpp.o.d -o CMakeFiles/mmodformat.dir/mmodformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mmodformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mmodformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 63%] Linking CXX shared module ../../lib/x86_64-linux-gnu/mmodformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mmodformat.dir/link.d -o ../../lib/x86_64-linux-gnu/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 63%] Built target mmodformat make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake "--color=" moldenformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 63%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o -MF CMakeFiles/moldenformat.dir/moldenformat.cpp.o.d -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/moldenformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/moldenformat.cpp:36: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/moldenformat.cpp:35: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/moldenformat.cpp:27: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 63%] Linking CXX shared module ../../lib/x86_64-linux-gnu/mmcifformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mmcifformat.dir/link.d -o ../../lib/x86_64-linux-gnu/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 63%] Built target mmcifformat make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake "--color=" mpdformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 63%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpdformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o -MF CMakeFiles/mpdformat.dir/mpdformat.cpp.o.d -o CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mpdformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mpdformat.cpp:22: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 63%] Linking CXX shared module ../../lib/x86_64-linux-gnu/moldenformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/moldenformat.dir/link.d -o ../../lib/x86_64-linux-gnu/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 63%] Built target moldenformat make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake "--color=" mpqcformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 63%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpqcformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -MF CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o.d -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mpqcformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/mpqcformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 64%] Linking CXX shared module ../../lib/x86_64-linux-gnu/mpdformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mpdformat.dir/link.d -o ../../lib/x86_64-linux-gnu/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 64%] Built target mpdformat make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake "--color=" msiformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 64%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o -MF CMakeFiles/msiformat.dir/msiformat.cpp.o.d -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/msiformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/msiformat.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 64%] Linking CXX shared module ../../lib/x86_64-linux-gnu/mpqcformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mpqcformat.dir/link.d -o ../../lib/x86_64-linux-gnu/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 64%] Built target mpqcformat make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake "--color=" msmsformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsmsformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o -MF CMakeFiles/msmsformat.dir/msmsformat.cpp.o.d -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/msmsformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/msmsformat.cpp:28: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/msmsformat.cpp:27: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/msmsformat.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 65%] Linking CXX shared module ../../lib/x86_64-linux-gnu/msiformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/msiformat.dir/link.d -o ../../lib/x86_64-linux-gnu/msiformat.so CMakeFiles/msiformat.dir/msiformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Built target msiformat make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake "--color=" opendxformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dopendxformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -MF CMakeFiles/opendxformat.dir/opendxformat.cpp.o.d -o CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/opendxformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/opendxformat.cpp:24: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 65%] Linking CXX shared module ../../lib/x86_64-linux-gnu/msmsformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/msmsformat.dir/link.d -o ../../lib/x86_64-linux-gnu/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Built target msmsformat make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake "--color=" outformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Doutformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/outformat.dir/outformat.cpp.o -MF CMakeFiles/outformat.dir/outformat.cpp.o.d -o CMakeFiles/outformat.dir/outformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/outformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/outformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/opendxformat.cpp:21: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 65%] Linking CXX shared module ../../lib/x86_64-linux-gnu/opendxformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 [ 65%] Linking CXX shared module ../../lib/x86_64-linux-gnu/outformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/outformat.dir/link.d -o ../../lib/x86_64-linux-gnu/outformat.so CMakeFiles/outformat.dir/outformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/opendxformat.dir/link.d -o ../../lib/x86_64-linux-gnu/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Built target outformat [ 65%] Built target opendxformat make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake "--color=" pcmodelformat make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake "--color=" pdbqtformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o [ 65%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -MF CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o.d -o CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbqtformat.cpp cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -MF CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o.d -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pcmodelformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pcmodelformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbqtformat.cpp:24: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 65%] Linking CXX shared module ../../lib/x86_64-linux-gnu/pcmodelformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/pcmodelformat.dir/link.d -o ../../lib/x86_64-linux-gnu/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Built target pcmodelformat make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake "--color=" pointcloudformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -MF CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o.d -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pointcloudformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pointcloudformat.cpp:31: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbqtformat.cpp: In function ‘void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbqtformat.cpp:345:52: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 345 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbqtformat.cpp:345:15: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbqtformat.cpp: In function ‘void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbqtformat.cpp:363:60: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 363 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pdbqtformat.cpp:363:19: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pointcloudformat.cpp:30: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pointcloudformat.cpp:28: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 65%] Linking CXX shared module ../../lib/x86_64-linux-gnu/pointcloudformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/pointcloudformat.dir/link.d -o ../../lib/x86_64-linux-gnu/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Built target pointcloudformat make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake "--color=" posformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dposformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/posformat.dir/posformat.cpp.o -MF CMakeFiles/posformat.dir/posformat.cpp.o.d -o CMakeFiles/posformat.dir/posformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/posformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/posformat.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 65%] Linking CXX shared module ../../lib/x86_64-linux-gnu/posformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/posformat.dir/link.d -o ../../lib/x86_64-linux-gnu/posformat.so CMakeFiles/posformat.dir/posformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Built target posformat make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake "--color=" pqrformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Linking CXX shared module ../../lib/x86_64-linux-gnu/pdbqtformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1 [ 65%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpqrformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o -MF CMakeFiles/pqrformat.dir/pqrformat.cpp.o.d -o CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pqrformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pqrformat.cpp:16: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/pdbqtformat.dir/link.d -o ../../lib/x86_64-linux-gnu/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Built target pdbqtformat make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake "--color=" shelxformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 65%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dshelxformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o -MF CMakeFiles/shelxformat.dir/shelxformat.cpp.o.d -o CMakeFiles/shelxformat.dir/shelxformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/shelxformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/shelxformat.cpp:18: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/math/matrix3x3.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/shelxformat.cpp:17: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pqrformat.cpp: In member function ‘virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pqrformat.cpp:511:58: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 511 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pqrformat.cpp:511:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pqrformat.cpp: In member function ‘virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pqrformat.cpp:528:66: warning: ‘%-3s’ directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=] 528 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^~~~ ~~~ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/pqrformat.cpp:528:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 5 and 17 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 66%] Linking CXX shared module ../../lib/x86_64-linux-gnu/shelxformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/shelxformat.dir/link.d -o ../../lib/x86_64-linux-gnu/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 66%] Built target shelxformat make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake "--color=" smileyformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 67%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmileyformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o -MF CMakeFiles/smileyformat.dir/smileyformat.cpp.o.d -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/smileyformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/smileyformat.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 67%] Linking CXX shared module ../../lib/x86_64-linux-gnu/pqrformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/pqrformat.dir/link.d -o ../../lib/x86_64-linux-gnu/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 67%] Built target pqrformat make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake "--color=" stlformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 67%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o -MF CMakeFiles/stlformat.dir/stlformat.cpp.o.d -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/stlformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/stlformat.cpp:33: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/stlformat.cpp:32: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/stlformat.cpp:28: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 67%] Linking CXX shared module ../../lib/x86_64-linux-gnu/stlformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/stlformat.dir/link.d -o ../../lib/x86_64-linux-gnu/stlformat.so CMakeFiles/stlformat.dir/stlformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 67%] Built target stlformat make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake "--color=" thermoformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 67%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o -MF CMakeFiles/thermoformat.dir/thermoformat.cpp.o.d -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/thermoformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/thermoformat.cpp:23: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/thermoformat.cpp:21: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 67%] Linking CXX shared module ../../lib/x86_64-linux-gnu/smileyformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/smileyformat.dir/link.d -o ../../lib/x86_64-linux-gnu/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 67%] Built target smileyformat make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake "--color=" tinkerformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 67%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtinkerformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -MF CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o.d -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/tinkerformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/tinkerformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 68%] Linking CXX shared module ../../lib/x86_64-linux-gnu/thermoformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/thermoformat.dir/link.d -o ../../lib/x86_64-linux-gnu/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 68%] Built target thermoformat make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake "--color=" unichemformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 68%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o -MF CMakeFiles/unichemformat.dir/unichemformat.cpp.o.d -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/unichemformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/unichemformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 68%] Linking CXX shared module ../../lib/x86_64-linux-gnu/tinkerformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/tinkerformat.dir/link.d -o ../../lib/x86_64-linux-gnu/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 68%] Built target tinkerformat make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake "--color=" viewmolformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 68%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dviewmolformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -MF CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o.d -o CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/viewmolformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/viewmolformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 68%] Linking CXX shared module ../../lib/x86_64-linux-gnu/unichemformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/unichemformat.dir/link.d -o ../../lib/x86_64-linux-gnu/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 68%] Built target unichemformat make -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/wlnformat.dir/DependInfo.cmake "--color=" wlnformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 68%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o -MF CMakeFiles/wlnformat.dir/wlnformat.cpp.o.d -o CMakeFiles/wlnformat.dir/wlnformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/wlnformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/wlnformat.cpp:18: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 68%] Linking CXX shared module ../../lib/x86_64-linux-gnu/viewmolformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/viewmolformat.dir/link.d -o ../../lib/x86_64-linux-gnu/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 68%] Built target viewmolformat make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake "--color=" xedformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 68%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxedformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o -MF CMakeFiles/xedformat.dir/xedformat.cpp.o.d -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xedformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xedformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 69%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -MF CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o.d -o CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/wln-nextmove.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 69%] Linking CXX shared module ../../lib/x86_64-linux-gnu/xedformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/xedformat.dir/link.d -o ../../lib/x86_64-linux-gnu/xedformat.so CMakeFiles/xedformat.dir/xedformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 69%] Built target xedformat make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake "--color=" xyzformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 69%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxyzformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o -MF CMakeFiles/xyzformat.dir/xyzformat.cpp.o.d -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xyzformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xyzformat.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 70%] Linking CXX shared module ../../lib/x86_64-linux-gnu/xyzformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/xyzformat.dir/link.d -o ../../lib/x86_64-linux-gnu/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 70%] Built target xyzformat make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake "--color=" yasaraformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 70%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dyasaraformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -MF CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o.d -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/yasaraformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/yasaraformat.cpp:34: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 70%] Linking CXX shared module ../../lib/x86_64-linux-gnu/wlnformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/wlnformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/wlnformat.dir/link.d -o ../../lib/x86_64-linux-gnu/wlnformat.so CMakeFiles/wlnformat.dir/wlnformat.cpp.o "CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o" /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 70%] Built target wlnformat make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake "--color=" rxnformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 70%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o -MF CMakeFiles/rxnformat.dir/rxnformat.cpp.o.d -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rxnformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rxnformat.cpp:27: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/yasaraformat.cpp: In member function ‘virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/yasaraformat.cpp:572:36: warning: ‘__builtin___snprintf_chk’ output truncated before the last format character [-Wformat-truncation=] 572 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/yasaraformat.cpp:572:15: /usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 5 and 12 bytes into a destination of size 4 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rxnformat.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rxnformat.cpp:18: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 70%] Linking CXX shared module ../../lib/x86_64-linux-gnu/yasaraformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/yasaraformat.dir/link.d -o ../../lib/x86_64-linux-gnu/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 70%] Built target yasaraformat make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake "--color=" chemdrawcdx make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 70%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -MF CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o.d -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chemdrawcdx.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chemdrawcdx.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 70%] Linking CXX shared module ../../lib/x86_64-linux-gnu/rxnformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/rxnformat.dir/link.d -o ../../lib/x86_64-linux-gnu/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 70%] Built target rxnformat make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake "--color=" chemkinformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 70%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemkinformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -MF CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o.d -o CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chemkinformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chemkinformat.cpp:34: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chemkinformat.cpp:31: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/chemkinformat.cpp:18: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 71%] Linking CXX shared module ../../lib/x86_64-linux-gnu/chemdrawcdx.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/chemdrawcdx.dir/link.d -o ../../lib/x86_64-linux-gnu/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 71%] Built target chemdrawcdx make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/rinchiformat.dir/DependInfo.cmake "--color=" rinchiformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 72%] Building CXX object src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drinchiformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -MF CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o.d -o CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rinchiformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rinchiformat.cpp:25: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rinchiformat.cpp:23: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rinchiformat.cpp:17: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 72%] Linking CXX shared module ../../lib/x86_64-linux-gnu/chemkinformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/chemkinformat.dir/link.d -o ../../lib/x86_64-linux-gnu/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 72%] Built target chemkinformat make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake "--color=" rsmiformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 72%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drsmiformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -MF CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o.d -o CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rsmiformat.cpp [ 72%] Linking CXX shared module ../../lib/x86_64-linux-gnu/rinchiformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rinchiformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/rinchiformat.dir/link.d -o ../../lib/x86_64-linux-gnu/rinchiformat.so CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 72%] Built target rinchiformat make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake "--color=" png2format make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 73%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/png2format.dir/png2format.cpp.o -MF CMakeFiles/png2format.dir/png2format.cpp.o.d -o CMakeFiles/png2format.dir/png2format.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/png2format.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/png2format.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rsmiformat.cpp:23: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/rsmiformat.cpp:17: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 74%] Linking CXX shared module ../../lib/x86_64-linux-gnu/rsmiformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1 [ 74%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -MF CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o.d -o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/depict/cairopainter.cpp /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/rsmiformat.dir/link.d -o ../../lib/x86_64-linux-gnu/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 74%] Built target rsmiformat make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake "--color=" cdxmlformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 74%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -MF CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o.d -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/cdxmlformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/cdxmlformat.cpp:20: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 74%] Linking CXX shared module ../../lib/x86_64-linux-gnu/png2format.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/png2format.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/png2format.dir/link.d -o ../../lib/x86_64-linux-gnu/png2format.so CMakeFiles/png2format.dir/png2format.cpp.o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 74%] Built target png2format make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake "--color=" cmlformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 74%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -MF CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o.d -o CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/cmlformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/cmlformat.cpp:29: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 74%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xml.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/math/matrix3x3.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/cmlformat.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xml.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 74%] Linking CXX shared module ../../lib/x86_64-linux-gnu/cdxmlformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/cdxmlformat.dir/link.d -o ../../lib/x86_64-linux-gnu/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm /usr/lib/x86_64-linux-gnu/libxml2.so ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 74%] Built target cdxmlformat make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake "--color=" pubchem make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 74%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -MF CMakeFiles/pubchem.dir/xml/pubchem.cpp.o.d -o CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/pubchem.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/pubchem.cpp:17: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o -MF CMakeFiles/pubchem.dir/xml/xml.cpp.o.d -o CMakeFiles/pubchem.dir/xml/xml.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xml.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xml.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Linking CXX shared module ../../lib/x86_64-linux-gnu/pubchem.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/pubchem.dir/link.d -o ../../lib/x86_64-linux-gnu/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.cpp.o CMakeFiles/pubchem.dir/xml/xml.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm /usr/lib/x86_64-linux-gnu/libxml2.so ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 75%] Built target pubchem make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake "--color=" xmlformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 75%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -MF CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o.d -o CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xmlformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xmlformat.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 76%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/cmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xml.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xml.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 77%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/xmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xml.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xml.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 77%] Linking CXX shared module ../../lib/x86_64-linux-gnu/cmlformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/cmlformat.dir/link.d -o ../../lib/x86_64-linux-gnu/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o CMakeFiles/cmlformat.dir/xml/xml.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm /usr/lib/x86_64-linux-gnu/libxml2.so ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 77%] Built target cmlformat make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake "--color=" cmlreactformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 77%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -MF CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o.d -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/cmlreactformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/cmlreactformat.cpp:21: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 77%] Linking CXX shared module ../../lib/x86_64-linux-gnu/xmlformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/xmlformat.dir/link.d -o ../../lib/x86_64-linux-gnu/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o CMakeFiles/xmlformat.dir/xml/xml.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm /usr/lib/x86_64-linux-gnu/libxml2.so ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 77%] Built target xmlformat make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/chemdoodlejsonformat.dir/DependInfo.cmake "--color=" chemdoodlejsonformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 77%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -MF CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o.d -o CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/json/chemdoodlejsonformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/json/chemdoodlejsonformat.cpp:20: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/cmlreactformat.cpp:15: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/stl_tree.h:65, from /usr/include/c++/16/map:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/json/chemdoodlejsonformat.cpp:17: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 77%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -MF CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xml.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/xml/xml.cpp:15: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/xml.h:21: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 77%] Linking CXX shared module ../../lib/x86_64-linux-gnu/chemdoodlejsonformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdoodlejsonformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/chemdoodlejsonformat.dir/link.d -o ../../lib/x86_64-linux-gnu/chemdoodlejsonformat.so CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 77%] Built target chemdoodlejsonformat make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake "--color=" pubchemjsonformat make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 77%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/x86_64-linux-gnu-g++ -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/cairo -I/usr/include/libxml2 -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -MF CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o.d -o CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/json/pubchemjsonformat.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:26, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/json/pubchemjsonformat.cpp:21: /usr/include/c++/16/ciso646:49:6: warning: #warning " is not a standard header since C++20, use to detect implementation-specific macros" [-Wcpp] 49 | # warning " is not a standard header since C++20, use to detect implementation-specific macros" | ^~~~~~~ [ 77%] Linking CXX shared module ../../lib/x86_64-linux-gnu/cmlreactformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/cmlreactformat.dir/link.d -o ../../lib/x86_64-linux-gnu/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm /usr/lib/x86_64-linux-gnu/libxml2.so ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 77%] Built target cmlreactformat make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obabel.dir/DependInfo.cmake "--color=" obabel make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 77%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obabel.dir/obabel.cpp.o -MF CMakeFiles/obabel.dir/obabel.cpp.o.d -o CMakeFiles/obabel.dir/obabel.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obabel.cpp /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obabel.cpp:104:29: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 104 | << __DATE__ << " -- " << __TIME__ << endl; | ^~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obabel.cpp:104:51: warning: macro ‘__TIME__’ might prevent reproducible builds [-Wdate-time] 104 | << __DATE__ << " -- " << __TIME__ << endl; | ^~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obabel.cpp:417:55: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 417 | cout << "Open Babel " << BABEL_VERSION << " -- " << __DATE__ << " -- " | ^~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obabel.cpp:418:11: warning: macro ‘__TIME__’ might prevent reproducible builds [-Wdate-time] 418 | << __TIME__ << endl; | ^~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obmolecformat.h:36: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/stl_tree.h:65, from /usr/include/c++/16/map:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/json/pubchemjsonformat.cpp:17: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obabel.cpp:43: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obabel.cpp:28: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 77%] Linking CXX executable ../bin/obabel cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obabel.dir/link.d CMakeFiles/obabel.dir/obabel.cpp.o -o ../bin/obabel ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 77%] Built target obabel make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obconformer.dir/DependInfo.cmake "--color=" obconformer make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 77%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obconformer.dir/obconformer.cpp.o -MF CMakeFiles/obconformer.dir/obconformer.cpp.o.d -o CMakeFiles/obconformer.dir/obconformer.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obconformer.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/forcefield.h:28, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obconformer.cpp:25: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/forcefield.h:22: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 78%] Linking CXX executable ../bin/obconformer cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obconformer.dir/link.d CMakeFiles/obconformer.dir/obconformer.cpp.o -o ../bin/obconformer ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 78%] Built target obconformer make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obenergy.dir/DependInfo.cmake "--color=" obenergy make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 78%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obenergy.dir/obenergy.cpp.o -MF CMakeFiles/obenergy.dir/obenergy.cpp.o.d -o CMakeFiles/obenergy.dir/obenergy.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obenergy.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obenergy.cpp:28: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/base.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obenergy.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 78%] Linking CXX executable ../bin/obenergy cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obenergy.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obenergy.dir/link.d CMakeFiles/obenergy.dir/obenergy.cpp.o -o ../bin/obenergy ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 78%] Built target obenergy make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obfit.dir/DependInfo.cmake "--color=" obfit make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 78%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obfit.dir/obfit.cpp.o -MF CMakeFiles/obfit.dir/obfit.cpp.o.d -o CMakeFiles/obfit.dir/obfit.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obfit.cpp [ 78%] Linking CXX shared module ../../lib/x86_64-linux-gnu/pubchemjsonformat.so cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchemjsonformat.dir/link.txt --verbose=1 In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obfit.cpp:37: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obfit.cpp:35: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -shared -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/pubchemjsonformat.dir/link.d -o ../../lib/x86_64-linux-gnu/pubchemjsonformat.so CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o /usr/lib/x86_64-linux-gnu/libmaeparser.so /usr/lib/x86_64-linux-gnu/libcoordgen.so -lm -ldl /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libcairo.so /usr/lib/x86_64-linux-gnu/libinchi.so -lm ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 78%] Built target pubchemjsonformat make -f tools/CMakeFiles/obfitall.dir/build.make tools/CMakeFiles/obfitall.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obfitall.dir/DependInfo.cmake "--color=" obfitall make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obfitall.dir/build.make tools/CMakeFiles/obfitall.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 79%] Building CXX object tools/CMakeFiles/obfitall.dir/obfitall.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obfitall.dir/obfitall.cpp.o -MF CMakeFiles/obfitall.dir/obfitall.cpp.o.d -o CMakeFiles/obfitall.dir/obfitall.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obfitall.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obfitall.cpp:40: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obfitall.cpp:35: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 79%] Linking CXX executable ../bin/obfit cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obfit.dir/link.d CMakeFiles/obfit.dir/obfit.cpp.o -o ../bin/obfit ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 79%] Built target obfit make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obgen.dir/DependInfo.cmake "--color=" obgen make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 79%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obgen.dir/obgen.cpp.o -MF CMakeFiles/obgen.dir/obgen.cpp.o.d -o CMakeFiles/obgen.dir/obgen.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obgen.cpp [ 79%] Linking CXX executable ../bin/obfitall cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfitall.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obfitall.dir/link.d CMakeFiles/obfitall.dir/obfitall.cpp.o -o ../bin/obfitall ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 79%] Built target obfitall make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obminimize.dir/DependInfo.cmake "--color=" obminimize make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 80%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obminimize.dir/obminimize.cpp.o -MF CMakeFiles/obminimize.dir/obminimize.cpp.o.d -o CMakeFiles/obminimize.dir/obminimize.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obminimize.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obgen.cpp:32: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/list:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obgen.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obminimize.cpp:28: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/base.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obminimize.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 80%] Linking CXX executable ../bin/obgen cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgen.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obgen.dir/link.d CMakeFiles/obgen.dir/obgen.cpp.o -o ../bin/obgen ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 80%] Built target obgen make -f tools/CMakeFiles/obmm.dir/build.make tools/CMakeFiles/obmm.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obmm.dir/DependInfo.cmake "--color=" obmm make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obmm.dir/build.make tools/CMakeFiles/obmm.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 80%] Building CXX object tools/CMakeFiles/obmm.dir/obmm.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obmm.dir/obmm.cpp.o -MF CMakeFiles/obmm.dir/obmm.cpp.o.d -o CMakeFiles/obmm.dir/obmm.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obmm.cpp [ 80%] Linking CXX executable ../bin/obminimize cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obminimize.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obminimize.dir/link.d CMakeFiles/obminimize.dir/obminimize.cpp.o -o ../bin/obminimize ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 80%] Built target obminimize make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obprobe.dir/DependInfo.cmake "--color=" obprobe make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 80%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obprobe.dir/obprobe.cpp.o -MF CMakeFiles/obprobe.dir/obprobe.cpp.o.d -o CMakeFiles/obprobe.dir/obprobe.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obprobe.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obmm.cpp:58: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/base.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obmm.cpp:54: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obprobe.cpp:32: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/base.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obprobe.cpp:28: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 80%] Linking CXX executable ../bin/obmm cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obmm.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obmm.dir/link.d CMakeFiles/obmm.dir/obmm.cpp.o -o ../bin/obmm ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 80%] Built target obmm make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obprop.dir/DependInfo.cmake "--color=" obprop make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 80%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obprop.dir/obprop.cpp.o -MF CMakeFiles/obprop.dir/obprop.cpp.o.d -o CMakeFiles/obprop.dir/obprop.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obprop.cpp [ 81%] Linking CXX executable ../bin/obprobe cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprobe.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obprobe.dir/link.d CMakeFiles/obprobe.dir/obprobe.cpp.o -o ../bin/obprobe ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 81%] Built target obprobe make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake "--color=" obrotamer make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 81%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o -MF CMakeFiles/obrotamer.dir/obrotamer.cpp.o.d -o CMakeFiles/obrotamer.dir/obrotamer.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obrotamer.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/descriptor.h:27, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obprop.cpp:29: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obprop.cpp:28: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obrotamer.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obrotamer.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 81%] Linking CXX executable ../bin/obprop cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obprop.dir/link.d CMakeFiles/obprop.dir/obprop.cpp.o -o ../bin/obprop ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 81%] Built target obprop make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obrotate.dir/DependInfo.cmake "--color=" obrotate make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 82%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obrotate.dir/obrotate.cpp.o -MF CMakeFiles/obrotate.dir/obrotate.cpp.o.d -o CMakeFiles/obrotate.dir/obrotate.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obrotate.cpp [ 82%] Linking CXX executable ../bin/obrotamer cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotamer.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obrotamer.dir/link.d CMakeFiles/obrotamer.dir/obrotamer.cpp.o -o ../bin/obrotamer ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 82%] Built target obrotamer make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obsym.dir/DependInfo.cmake "--color=" obsym In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obrotate.cpp:43: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obrotate.cpp:38: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 83%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obsym.dir/obsym.cpp.o -MF CMakeFiles/obsym.dir/obsym.cpp.o.d -o CMakeFiles/obsym.dir/obsym.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obsym.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obsym.cpp:29: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obsym.cpp:28: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 83%] Linking CXX executable ../bin/obrotate cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1 [ 83%] Linking CXX executable ../bin/obsym cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obsym.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obrotate.dir/link.d CMakeFiles/obrotate.dir/obrotate.cpp.o -o ../bin/obrotate ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 83%] Built target obrotate make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obtautomer.dir/DependInfo.cmake "--color=" obtautomer make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 83%] Building CXX object tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o -MF CMakeFiles/obtautomer.dir/obtautomer.cpp.o.d -o CMakeFiles/obtautomer.dir/obtautomer.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obtautomer.cpp /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obsym.dir/link.d CMakeFiles/obsym.dir/obsym.cpp.o -o ../bin/obsym ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 83%] Built target obsym make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obthermo.dir/DependInfo.cmake "--color=" obthermo make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 83%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obthermo.dir/obthermo.cpp.o -MF CMakeFiles/obthermo.dir/obthermo.cpp.o.d -o CMakeFiles/obthermo.dir/obthermo.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obthermo.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obtautomer.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obtautomer.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obthermo.cpp:27: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/base.h:25, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obthermo.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 83%] Linking CXX executable ../bin/obtautomer cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obtautomer.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obtautomer.dir/link.d CMakeFiles/obtautomer.dir/obtautomer.cpp.o -o ../bin/obtautomer ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 83%] Built target obtautomer make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obgrep.dir/DependInfo.cmake "--color=" obgrep make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 84%] Linking CXX executable ../bin/obthermo cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obthermo.dir/link.txt --verbose=1 [ 84%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obgrep.dir/obgrep.cpp.o -MF CMakeFiles/obgrep.dir/obgrep.cpp.o.d -o CMakeFiles/obgrep.dir/obgrep.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obgrep.cpp /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obthermo.dir/link.d CMakeFiles/obthermo.dir/obthermo.cpp.o -o ../bin/obthermo ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 84%] Built target obthermo make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake "--color=" obspectrophore make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 84%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -MF CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o.d -o CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obspectrophore.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obgrep.cpp:28: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obgrep.cpp:27: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obspectrophore.cpp:10: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/tools/obspectrophore.cpp:1: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 85%] Linking CXX executable ../bin/obgrep cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obgrep.dir/link.d CMakeFiles/obgrep.dir/obgrep.cpp.o -o ../bin/obgrep ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 85%] Built target obgrep make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/GUI /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake "--color=" obgui make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 85%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/GUI && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/. -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o -MF CMakeFiles/obgui.dir/OBGUI.cpp.o.d -o CMakeFiles/obgui.dir/OBGUI.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/OBGUI.cpp [ 85%] Linking CXX executable ../bin/obspectrophore cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obspectrophore.dir/link.d CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -o ../bin/obspectrophore ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 85%] Built target obspectrophore make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test/CMakeFiles/test_runner.dir/DependInfo.cmake "--color=" test_runner make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/test_runner.cpp.o -MF CMakeFiles/test_runner.dir/test_runner.cpp.o.d -o CMakeFiles/test_runner.dir/test_runner.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test/test_runner.cpp [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/aliastest.cpp.o -MF CMakeFiles/test_runner.dir/aliastest.cpp.o.d -o CMakeFiles/test_runner.dir/aliastest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/aliastest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/aliastest.cpp:14: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/OBGUI.cpp:23: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/wx-3.2/wx/stringimpl.h:66, from /usr/include/wx-3.2/wx/unichar.h:15, from /usr/include/wx-3.2/wx/strvararg.h:19, from /usr/include/wx-3.2/wx/string.h:37, from /usr/include/wx-3.2/wx/memory.h:15, from /usr/include/wx-3.2/wx/object.h:19, from /usr/include/wx-3.2/wx/tokenzr.h:14, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/./stdwx.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/OBGUI.cpp:20: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/OBGUI.cpp: In member function ‘void OBGUIFrame::OnConvert(wxCommandEvent&)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/OBGUI.cpp:589:9: warning: ignoring return value of ‘std::__cxx11::basic_istringstream<_CharT, _Traits, _Alloc>::__string_type std::__cxx11::basic_istringstream<_CharT, _Traits, _Alloc>::str() const & [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; __string_type = std::__cxx11::basic_string]’, declared with attribute ‘nodiscard’ [-Wunused-result] 589 | ss.str(); | ~~~~~~^~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:28: /usr/include/c++/16/sstream:796:7: note: declared here 796 | str() const _GLIBCXX_LVAL_REF_QUAL | ^~~ [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o -MF CMakeFiles/test_runner.dir/automorphismtest.cpp.o.d -o CMakeFiles/test_runner.dir/automorphismtest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/automorphismtest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/automorphismtest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/buildertest.cpp.o -MF CMakeFiles/test_runner.dir/buildertest.cpp.o.d -o CMakeFiles/test_runner.dir/buildertest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/buildertest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/buildertest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o -MF CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o.d -o CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/canonconsistenttest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/canonconsistenttest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o -MF CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o.d -o CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/canonfragmenttest.cpp [ 86%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/GUI && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/. -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o -MF CMakeFiles/obgui.dir/stdwx.cpp.o.d -o CMakeFiles/obgui.dir/stdwx.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/stdwx.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/canonfragmenttest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o -MF CMakeFiles/test_runner.dir/canonstabletest.cpp.o.d -o CMakeFiles/test_runner.dir/canonstabletest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/canonstabletest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/canonstabletest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/canonstabletest.cpp: In function ‘int canonstabletest(int, char**)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/canonstabletest.cpp:45:26: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 45 | std::random_shuffle(atoms.begin(), atoms.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/algorithm:63, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/canonstabletest.cpp:9: /usr/include/c++/16/bits/stl_algo.h:4511:5: note: declared here 4511 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o -MF CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o.d -o CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/carspacegrouptest.cpp [ 87%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/GUI && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/. -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o -MF CMakeFiles/obgui.dir/optswx.cpp.o.d -o CMakeFiles/obgui.dir/optswx.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/optswx.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/carspacegrouptest.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o -MF CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o.d -o CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/cifspacegrouptest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/cifspacegrouptest.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/./optswx.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/optswx.cpp:22: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/wx-3.2/wx/stringimpl.h:66, from /usr/include/wx-3.2/wx/unichar.h:15, from /usr/include/wx-3.2/wx/strvararg.h:19, from /usr/include/wx-3.2/wx/string.h:37, from /usr/include/wx-3.2/wx/memory.h:15, from /usr/include/wx-3.2/wx/object.h:19, from /usr/include/wx-3.2/wx/tokenzr.h:14, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/./stdwx.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/optswx.cpp:19: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/optswx.cpp: In member function ‘char* DynOptionswx::strcasestr(const char*, const char*)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/optswx.cpp:394:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 394 | register unsigned char *h, *n, *hc, *nc; | ^ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/optswx.cpp:394:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 394 | register unsigned char *h, *n, *hc, *nc; | ^ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/optswx.cpp:394:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 394 | register unsigned char *h, *n, *hc, *nc; | ^~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/GUI/optswx.cpp:394:40: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 394 | register unsigned char *h, *n, *hc, *nc; | ^~ [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cistranstest.cpp.o -MF CMakeFiles/test_runner.dir/cistranstest.cpp.o.d -o CMakeFiles/test_runner.dir/cistranstest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/cistranstest.cpp [ 87%] Linking CXX executable ../../bin/obgui cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/src/GUI && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgui.dir/link.txt --verbose=1 In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/cistranstest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/obgui.dir/link.d CMakeFiles/obgui.dir/OBGUI.cpp.o CMakeFiles/obgui.dir/stdwx.cpp.o CMakeFiles/obgui.dir/optswx.cpp.o -o ../../bin/obgui ../../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 -L/usr/lib/x86_64-linux-gnu -pthread -lwx_baseu-3.2 -lwx_gtk3u_core-3.2 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 87%] Built target obgui [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/conversiontest.cpp.o -MF CMakeFiles/test_runner.dir/conversiontest.cpp.o.d -o CMakeFiles/test_runner.dir/conversiontest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/conversiontest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/conversiontest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o -MF CMakeFiles/test_runner.dir/graphsymtest.cpp.o.d -o CMakeFiles/test_runner.dir/graphsymtest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/graphsymtest.cpp [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/gziptest.cpp.o -MF CMakeFiles/test_runner.dir/gziptest.cpp.o.d -o CMakeFiles/test_runner.dir/gziptest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/gziptest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/graphsymtest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/gziptest.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/gziptest.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/addhtest.cpp.o -MF CMakeFiles/test_runner.dir/addhtest.cpp.o.d -o CMakeFiles/test_runner.dir/addhtest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/addhtest.cpp [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o -MF CMakeFiles/test_runner.dir/implicitHtest.cpp.o.d -o CMakeFiles/test_runner.dir/implicitHtest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/implicitHtest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/addhtest.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/addhtest.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/implicitHtest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/lssrtest.cpp.o -MF CMakeFiles/test_runner.dir/lssrtest.cpp.o.d -o CMakeFiles/test_runner.dir/lssrtest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/lssrtest.cpp [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o -MF CMakeFiles/test_runner.dir/isomorphismtest.cpp.o.d -o CMakeFiles/test_runner.dir/isomorphismtest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/isomorphismtest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/lssrtest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/lssrtest.cpp: In function ‘bool doShuffleTestMolecule(OpenBabel::OBMol&)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/lssrtest.cpp:64:24: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 64 | std::random_shuffle(atoms.begin(), atoms.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/algorithm:63, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/ring.h:24, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/lssrtest.cpp:4: /usr/include/c++/16/bits/stl_algo.h:4511:5: note: declared here 4511 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/isomorphismtest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/multicmltest.cpp.o -MF CMakeFiles/test_runner.dir/multicmltest.cpp.o.d -o CMakeFiles/test_runner.dir/multicmltest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/multicmltest.cpp make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake "--color=" test_inchiwrite make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 89%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -MF CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o.d -o CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/inchiwrite.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/multicmltest.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/multicmltest.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/periodictest.cpp.o -MF CMakeFiles/test_runner.dir/periodictest.cpp.o.d -o CMakeFiles/test_runner.dir/periodictest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/periodictest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/inchiwrite.cpp:30: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/inchiwrite.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -MF CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o.d -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/src/formats/getinchi.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/periodictest.cpp:20: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Linking CXX executable ../bin/test_inchiwrite cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_inchiwrite.dir/link.d CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -o ../bin/test_inchiwrite ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 89%] Built target test_inchiwrite make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test/CMakeFiles/roundtrip.dir/DependInfo.cmake "--color=" roundtrip make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 89%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o -MF CMakeFiles/roundtrip.dir/roundtrip.cpp.o.d -o CMakeFiles/roundtrip.dir/roundtrip.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/roundtrip.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/roundtrip.cpp:29: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/roundtrip.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/regressionstest.cpp.o -MF CMakeFiles/test_runner.dir/regressionstest.cpp.o.d -o CMakeFiles/test_runner.dir/regressionstest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/regressionstest.cpp [ 89%] Linking CXX executable ../bin/roundtrip cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/roundtrip.dir/link.d CMakeFiles/roundtrip.dir/roundtrip.cpp.o -o ../bin/roundtrip ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 89%] Built target roundtrip make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openbabel-7yTj35/openbabel-3.1.1+dfsg /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/scripts /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/scripts /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake "--color=" bindings_python make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/build make[4]: Entering directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 89%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/scripts && /usr/bin/x86_64-linux-gnu-g++ -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbindings_python_EXPORTS -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/usr/include/python3.14 -I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -MD -MT scripts/CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o -MF CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o.d -o CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/scripts/python/openbabel/openbabel-python.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/regressionstest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/scripts/python/openbabel/openbabel-python.cpp:3455: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/math/align.h:26:10: fatal error: Eigen/Core: No such file or directory 26 | #include | ^~~~~~~~~~~~ compilation terminated. make[4]: *** [scripts/CMakeFiles/bindings_python.dir/build.make:89: scripts/CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o] Error 1 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make[3]: *** [CMakeFiles/Makefile2:6449: scripts/CMakeFiles/bindings_python.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/rotortest.cpp.o -MF CMakeFiles/test_runner.dir/rotortest.cpp.o.d -o CMakeFiles/test_runner.dir/rotortest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/rotortest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/rotortest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/shuffletest.cpp.o -MF CMakeFiles/test_runner.dir/shuffletest.cpp.o.d -o CMakeFiles/test_runner.dir/shuffletest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/shuffletest.cpp [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smilestest.cpp.o -MF CMakeFiles/test_runner.dir/smilestest.cpp.o.d -o CMakeFiles/test_runner.dir/smilestest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/smilestest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/shuffletest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/shuffletest.cpp: In function ‘bool doShuffleTest(const std::string&)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/shuffletest.cpp:133:24: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 133 | std::random_shuffle(atoms.begin(), atoms.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/algorithm:63, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/shuffletest.cpp:13: /usr/include/c++/16/bits/stl_algo.h:4511:5: note: declared here 4511 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/shuffletest.cpp: In function ‘bool doShuffleTestFile(const std::string&)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/shuffletest.cpp:175:24: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 175 | std::random_shuffle(atoms.begin(), atoms.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_algo.h:4511:5: note: declared here 4511 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/shuffletest.cpp: In function ‘bool doShuffleTestOnMultiFile(const std::string&)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/shuffletest.cpp:220:26: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 220 | std::random_shuffle(atoms.begin(), atoms.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_algo.h:4511:5: note: declared here 4511 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/smilestest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o -MF CMakeFiles/test_runner.dir/spectrophoretest.cpp.o.d -o CMakeFiles/test_runner.dir/spectrophoretest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/spectrophoretest.cpp [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o -MF CMakeFiles/test_runner.dir/squareplanartest.cpp.o.d -o CMakeFiles/test_runner.dir/squareplanartest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/squareplanartest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/spectrophoretest.cpp:3: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/vector:64, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/spectrophoretest.cpp:1: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/squareplanartest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/stereotest.cpp.o -MF CMakeFiles/test_runner.dir/stereotest.cpp.o.d -o CMakeFiles/test_runner.dir/stereotest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/stereotest.cpp [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o -MF CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o.d -o CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/stereoperceptiontest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/stereotest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/stereoperceptiontest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/stereotest.cpp: In function ‘bool doStereoPerception3(OpenBabel::OBMol&, const OpenBabel::OBStereoUnitSet&, OpenBabel::OBStereoUnitSetOfSets)’: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/stereotest.cpp:185:24: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 185 | std::random_shuffle(atoms.begin(), atoms.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/algorithm:63, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/stereotest.cpp:6: /usr/include/c++/16/bits/stl_algo.h:4511:5: note: declared here 4511 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tautomertest.cpp.o -MF CMakeFiles/test_runner.dir/tautomertest.cpp.o.d -o CMakeFiles/test_runner.dir/tautomertest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/tautomertest.cpp [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o -MF CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o.d -o CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/tetrahedraltest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/tautomertest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/tetrahedraltest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o -MF CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o.d -o CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/tetranonplanartest.cpp [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o -MF CMakeFiles/test_runner.dir/tetraplanartest.cpp.o.d -o CMakeFiles/test_runner.dir/tetraplanartest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/tetraplanartest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/tetranonplanartest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/tetraplanartest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o -MF CMakeFiles/test_runner.dir/uniqueidtest.cpp.o.d -o CMakeFiles/test_runner.dir/uniqueidtest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/uniqueidtest.cpp [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/maereadertest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/maereadertest.cpp.o -MF CMakeFiles/test_runner.dir/maereadertest.cpp.o.d -o CMakeFiles/test_runner.dir/maereadertest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/maereadertest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/uniqueidtest.cpp:1: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/aromatest.cpp.o -MF CMakeFiles/test_runner.dir/aromatest.cpp.o.d -o CMakeFiles/test_runner.dir/aromatest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/aromatest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/maereadertest.cpp:19: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/aromatest.cpp:28: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/aromatest.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/atom.cpp.o -MF CMakeFiles/test_runner.dir/atom.cpp.o.d -o CMakeFiles/test_runner.dir/atom.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/atom.cpp [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/bond.cpp.o -MF CMakeFiles/test_runner.dir/bond.cpp.o.d -o CMakeFiles/test_runner.dir/bond.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/bond.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/atom.cpp:27: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/atom.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/bond.cpp:28: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/bond.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cansmi.cpp.o -MF CMakeFiles/test_runner.dir/cansmi.cpp.o.d -o CMakeFiles/test_runner.dir/cansmi.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/cansmi.cpp [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o -MF CMakeFiles/test_runner.dir/charge_mmff94.cpp.o.d -o CMakeFiles/test_runner.dir/charge_mmff94.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/charge_mmff94.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/cansmi.cpp:29: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/cansmi.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/charge_mmff94.cpp:13: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/charge_mmff94.cpp:10: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o -MF CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o.d -o CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/charge_gasteiger.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/charge_gasteiger.cpp:13: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/charge_gasteiger.cpp:10: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/conversion.cpp.o -MF CMakeFiles/test_runner.dir/conversion.cpp.o.d -o CMakeFiles/test_runner.dir/conversion.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/conversion.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/conversion.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/conversion.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/datatest.cpp.o -MF CMakeFiles/test_runner.dir/datatest.cpp.o.d -o CMakeFiles/test_runner.dir/datatest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/datatest.cpp [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffgaff.cpp.o -MF CMakeFiles/test_runner.dir/ffgaff.cpp.o.d -o CMakeFiles/test_runner.dir/ffgaff.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffgaff.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffgaff.cpp:30: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffgaff.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffghemical.cpp.o -MF CMakeFiles/test_runner.dir/ffghemical.cpp.o.d -o CMakeFiles/test_runner.dir/ffghemical.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffghemical.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffghemical.cpp:30: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffghemical.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o -MF CMakeFiles/test_runner.dir/ffmmff94.cpp.o.d -o CMakeFiles/test_runner.dir/ffmmff94.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffmmff94.cpp [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffuff.cpp.o -MF CMakeFiles/test_runner.dir/ffuff.cpp.o.d -o CMakeFiles/test_runner.dir/ffuff.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffuff.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.h:8, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffmmff94.cpp:28: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffmmff94.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffuff.cpp:30: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ffuff.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/formalcharge.cpp.o -MF CMakeFiles/test_runner.dir/formalcharge.cpp.o.d -o CMakeFiles/test_runner.dir/formalcharge.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/formalcharge.cpp [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/format.cpp.o -MF CMakeFiles/test_runner.dir/format.cpp.o.d -o CMakeFiles/test_runner.dir/format.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/format.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/formalcharge.cpp:29: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/formalcharge.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/format.cpp:27: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/format.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/internalcoord.cpp.o -MF CMakeFiles/test_runner.dir/internalcoord.cpp.o.d -o CMakeFiles/test_runner.dir/internalcoord.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/internalcoord.cpp cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/formula.cpp.o -MF CMakeFiles/test_runner.dir/formula.cpp.o.d -o CMakeFiles/test_runner.dir/formula.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/formula.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/internalcoord.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/internalcoord.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/formula.cpp:30: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/formula.cpp:26: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o -MF CMakeFiles/test_runner.dir/invalidsmarts.cpp.o.d -o CMakeFiles/test_runner.dir/invalidsmarts.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/invalidsmarts.cpp [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o -MF CMakeFiles/test_runner.dir/invalidsmiles.cpp.o.d -o CMakeFiles/test_runner.dir/invalidsmiles.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/invalidsmiles.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/invalidsmiles.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/invalidsmiles.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/iterators.cpp.o -MF CMakeFiles/test_runner.dir/iterators.cpp.o.d -o CMakeFiles/test_runner.dir/iterators.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/iterators.cpp [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/logp_psa.cpp.o -MF CMakeFiles/test_runner.dir/logp_psa.cpp.o.d -o CMakeFiles/test_runner.dir/logp_psa.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/logp_psa.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/iterators.cpp:32: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/iterators.cpp:27: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/logp_psa.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/logp_psa.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/math.cpp.o -MF CMakeFiles/test_runner.dir/math.cpp.o.d -o CMakeFiles/test_runner.dir/math.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/math.cpp [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/mol.cpp.o -MF CMakeFiles/test_runner.dir/mol.cpp.o.d -o CMakeFiles/test_runner.dir/mol.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/mol.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/mol.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/mol.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o -MF CMakeFiles/test_runner.dir/pdbreadfile.cpp.o.d -o CMakeFiles/test_runner.dir/pdbreadfile.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/pdbreadfile.cpp [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/phmodel.cpp.o -MF CMakeFiles/test_runner.dir/phmodel.cpp.o.d -o CMakeFiles/test_runner.dir/phmodel.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/phmodel.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/pdbreadfile.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/pdbreadfile.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/phmodel.cpp:25: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/phmodel.cpp:24: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/residue.cpp.o -MF CMakeFiles/test_runner.dir/residue.cpp.o.d -o CMakeFiles/test_runner.dir/residue.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/residue.cpp [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ringtest.cpp.o -MF CMakeFiles/test_runner.dir/ringtest.cpp.o.d -o CMakeFiles/test_runner.dir/ringtest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ringtest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/residue.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/residue.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ringtest.cpp:33: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/ringtest.cpp:27: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smartstest.cpp.o -MF CMakeFiles/test_runner.dir/smartstest.cpp.o.d -o CMakeFiles/test_runner.dir/smartstest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/smartstest.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/smartstest.cpp:30: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/smartstest.cpp:27: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smartsparse.cpp.o -MF CMakeFiles/test_runner.dir/smartsparse.cpp.o.d -o CMakeFiles/test_runner.dir/smartsparse.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/smartsparse.cpp [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o -MF CMakeFiles/test_runner.dir/smilesmatch.cpp.o.d -o CMakeFiles/test_runner.dir/smilesmatch.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/smilesmatch.cpp [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/unitcell.cpp.o -MF CMakeFiles/test_runner.dir/unitcell.cpp.o.d -o CMakeFiles/test_runner.dir/unitcell.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/unitcell.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/smilesmatch.cpp:30: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/smilesmatch.cpp:27: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o -MF CMakeFiles/test_runner.dir/cmlreadfile.cpp.o.d -o CMakeFiles/test_runner.dir/cmlreadfile.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/cmlreadfile.cpp In file included from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/format.h:22, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/obconversion.h:37, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/cmlreadfile.cpp:26: /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/plugin.h:41:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/predefined_ops.h:33, from /usr/include/c++/16/bits/stl_algobase.h:70, from /usr/include/c++/16/bits/specfun.h:44, from /usr/include/c++/16/cmath:3913, from /usr/include/c++/16/math.h:36, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include/openbabel/mol.h:41, from /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/cmlreadfile.cpp:25: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/x86_64-linux-gnu-g++ -DFORMATDIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/lib/x86_64-linux-gnu//\" -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/data -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/include -I/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIE -MD -MT test/CMakeFiles/test_runner.dir/obtest.cpp.o -MF CMakeFiles/test_runner.dir/obtest.cpp.o.d -o CMakeFiles/test_runner.dir/obtest.cpp.o -c /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/test/obtest.cpp [ 99%] Linking CXX executable ../bin/test_runner cd /build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_runner.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/openbabel-7yTj35/openbabel-3.1.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_runner.dir/link.d CMakeFiles/test_runner.dir/test_runner.cpp.o CMakeFiles/test_runner.dir/aliastest.cpp.o CMakeFiles/test_runner.dir/automorphismtest.cpp.o CMakeFiles/test_runner.dir/buildertest.cpp.o CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o CMakeFiles/test_runner.dir/canonstabletest.cpp.o CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o CMakeFiles/test_runner.dir/cistranstest.cpp.o CMakeFiles/test_runner.dir/conversiontest.cpp.o CMakeFiles/test_runner.dir/graphsymtest.cpp.o CMakeFiles/test_runner.dir/gziptest.cpp.o CMakeFiles/test_runner.dir/addhtest.cpp.o CMakeFiles/test_runner.dir/implicitHtest.cpp.o CMakeFiles/test_runner.dir/lssrtest.cpp.o CMakeFiles/test_runner.dir/isomorphismtest.cpp.o CMakeFiles/test_runner.dir/multicmltest.cpp.o CMakeFiles/test_runner.dir/periodictest.cpp.o CMakeFiles/test_runner.dir/regressionstest.cpp.o CMakeFiles/test_runner.dir/rotortest.cpp.o CMakeFiles/test_runner.dir/shuffletest.cpp.o CMakeFiles/test_runner.dir/smilestest.cpp.o CMakeFiles/test_runner.dir/spectrophoretest.cpp.o CMakeFiles/test_runner.dir/squareplanartest.cpp.o CMakeFiles/test_runner.dir/stereotest.cpp.o CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o CMakeFiles/test_runner.dir/tautomertest.cpp.o CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o CMakeFiles/test_runner.dir/tetraplanartest.cpp.o CMakeFiles/test_runner.dir/uniqueidtest.cpp.o CMakeFiles/test_runner.dir/maereadertest.cpp.o CMakeFiles/test_runner.dir/aromatest.cpp.o CMakeFiles/test_runner.dir/atom.cpp.o CMakeFiles/test_runner.dir/bond.cpp.o CMakeFiles/test_runner.dir/cansmi.cpp.o CMakeFiles/test_runner.dir/charge_mmff94.cpp.o CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o CMakeFiles/test_runner.dir/conversion.cpp.o CMakeFiles/test_runner.dir/datatest.cpp.o CMakeFiles/test_runner.dir/ffgaff.cpp.o CMakeFiles/test_runner.dir/ffghemical.cpp.o CMakeFiles/test_runner.dir/ffmmff94.cpp.o CMakeFiles/test_runner.dir/ffuff.cpp.o CMakeFiles/test_runner.dir/formalcharge.cpp.o CMakeFiles/test_runner.dir/format.cpp.o CMakeFiles/test_runner.dir/formula.cpp.o CMakeFiles/test_runner.dir/internalcoord.cpp.o CMakeFiles/test_runner.dir/invalidsmarts.cpp.o CMakeFiles/test_runner.dir/invalidsmiles.cpp.o CMakeFiles/test_runner.dir/iterators.cpp.o CMakeFiles/test_runner.dir/logp_psa.cpp.o CMakeFiles/test_runner.dir/math.cpp.o CMakeFiles/test_runner.dir/mol.cpp.o CMakeFiles/test_runner.dir/pdbreadfile.cpp.o CMakeFiles/test_runner.dir/phmodel.cpp.o CMakeFiles/test_runner.dir/residue.cpp.o CMakeFiles/test_runner.dir/ringtest.cpp.o CMakeFiles/test_runner.dir/smartstest.cpp.o CMakeFiles/test_runner.dir/smartsparse.cpp.o CMakeFiles/test_runner.dir/smilesmatch.cpp.o CMakeFiles/test_runner.dir/unitcell.cpp.o CMakeFiles/test_runner.dir/cmlreadfile.cpp.o CMakeFiles/test_runner.dir/obtest.cpp.o -o ../bin/test_runner ../lib/x86_64-linux-gnu/libopenbabel.so.7.0.0 make[4]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' [ 99%] Built target test_runner make[3]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' make[2]: *** [Makefile:149: all] Error 2 make[2]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg/builddir' dh_auto_build: error: cd builddir && make -j2 INSTALL="install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:34: override_dh_auto_build] Error 25 make[1]: Leaving directory '/build/openbabel-7yTj35/openbabel-3.1.1+dfsg' make: *** [debian/rules:28: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 -------------------------------------------------------------------------------- Build finished at 2026-09-07T23:02:36Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup Mon, 07 Sep 2026 23:02:36 +0000 | +------------------------------------------------------------------------------+ Purging /build/openbabel-7yTj35 Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died with exit 2) +------------------------------------------------------------------------------+ | Summary Mon, 07 Sep 2026 23:02:39 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 804352 Build-Time: 352 Distribution: sid Fail-Stage: build Host Architecture: amd64 Install-Time: 89 Job: /srv/debomatic/incoming/openbabel_3.1.1+dfsg-14.dsc Machine Architecture: amd64 Package: openbabel Package-Time: 454 Source-Version: 3.1.1+dfsg-14 Space: 804352 Status: attempted Version: 3.1.1+dfsg-14 -------------------------------------------------------------------------------- Finished at 2026-09-07T23:02:36Z Build needed 00:07:34, 804352k disk space