sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk +==============================================================================+ | libsbml 5.20.2+dfsg-7 (amd64) Sun, 02 Jun 2024 19:00:58 +0000 | +==============================================================================+ Package: libsbml Version: 5.20.2+dfsg-7 Source Version: 5.20.2+dfsg-7 Distribution: sid Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-debomatic-42a53d1e-56db-42cf-ad07-7a4dc5709b46' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libsbml_5.20.2+dfsg-7 sid amd64 ------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libsbml_5.20.2+dfsg-7 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libsbml-aZTBR7/resolver-BCzoUd' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [198 kB] Get:2 http://localhost:3142/debian sid InRelease [198 kB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-02-1406.32-F-2024-06-02-1406.32.pdiff [80.8 kB] Get:5 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-02-1406.32-F-2024-06-02-1406.32.pdiff [80.8 kB] Get:6 http://localhost:3142/debian sid/main Sources T-2024-06-02-1406.32-F-2024-06-02-1406.32.pdiff [17.8 kB] Get:6 http://localhost:3142/debian sid/main Sources T-2024-06-02-1406.32-F-2024-06-02-1406.32.pdiff [17.8 kB] Fetched 622 kB in 6s (96.6 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libsbml_5.20.2+dfsg-7.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libsbml-aZTBR7/libsbml-5.20.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libsbml-aZTBR7' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-sequence-python3, dh-sequence-cli, cmake, dh-exec, doxygen, swig, libxml2-dev, python3-dev, perl, libperl-dev, default-jdk-headless, default-jdk-doc, dh-octave, r-base-dev, r-base-core, graphviz, zlib1g-dev, libbz2-dev, libnewlib-dev, check, rdfind, build-essential, fakeroot Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-sequence-python3, dh-sequence-cli, cmake, dh-exec, doxygen, swig, libxml2-dev, python3-dev, perl, libperl-dev, default-jdk-headless, default-jdk-doc, dh-octave, r-base-dev, r-base-core, graphviz, zlib1g-dev, libbz2-dev, libnewlib-dev, check, rdfind, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [975 B] Get:5 copy:/<>/apt_archive ./ Packages [925 B] Fetched 2509 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: aglfn autoconf automake autopoint autotools-dev bsdextrautils ca-certificates ca-certificates-java ca-certificates-mono check cli-common-dev cmake cmake-data cme debhelper default-jdk-doc default-jdk-headless default-jre-headless dh-autoreconf dh-exec dh-octave dh-octave-autopkgtest dh-python dh-strip-nondeterminism diffstat doxygen dwz fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-freefont-otf gettext gettext-base gfortran gfortran-13 gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu gnuplot-data gnuplot-nox graphviz groff-base hdf5-helpers ibverbs-providers icu-devtools intltool-debian iso-codes java-common libabsl20230802 libaec-dev libaec0 libalgorithm-c3-perl libaliased-perl libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 libapp-cmd-perl libapt-pkg-perl libarchive-zip-perl libarchive13t64 libarpack2t64 libarray-intspan-perl libasound2-data libasound2t64 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libb-hooks-endofscope-perl libb-hooks-op-check-perl libb2-1 libberkeleydb-perl libblas-dev libblas3 libboolean-perl libbrotli1 libbsd0 libbtf2 libbz2-dev libcairo2 libcamd3 libcapture-tiny-perl libcarp-assert-more-perl libcbor0.10 libccolamd3 libcdt5 libcgi-pm-perl libcgraph6 libcholmod5 libclang-cpp16t64 libclang1-16t64 libclass-c3-perl libclass-data-inheritable-perl libclass-load-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-choose-perl libclone-perl libcolamd3 libcom-err2 libcombblas2.0.0t64 libconfig-model-backend-yaml-perl libconfig-model-dpkg-perl libconfig-model-perl libconfig-tiny-perl libconst-fast-perl libconvert-binhex-perl libcpanel-json-xs-perl libcups2t64 libcurl3t64-gnutls libcurl4-openssl-dev libcurl4t64 libcxsparse4 libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-section-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdatrie1 libdav1d7 libdbus-1-3 libde265-0 libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libduktape207 libdynaloader-functions-perl libedit2 libegl-mesa0 libegl1 libelf1t64 libemail-address-xs-perl libencode-locale-perl liberror-perl libevdev2 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexception-class-perl libexif12 libexpat1 libexpat1-dev libexporter-lite-perl libexporter-tiny-perl libfabric1 libfakeroot libfeature-compat-class-perl libfeature-compat-try-perl libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-mpi3 libfftw3-quad3 libfftw3-single3 libfido2-1 libfile-basedir-perl libfile-find-rule-perl libfile-homedir-perl libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libflac12t64 libfltk-gl1.3t64 libfltk1.3t64 libfmt9 libfont-ttf-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgbm1 libgd3 libgdiplus libgetopt-long-descriptive-perl libgfortran-13-dev libgfortran5 libgif7 libgl-dev libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglib2.0-0t64 libglpk40 libglu1-mesa libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphicsmagick++-q16-12t64 libgraphicsmagick-q16-3t64 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5t64 libgudev-1.0-0 libgvc6 libgvpr2 libharfbuzz0b libhash-merge-perl libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhdf5-openmpi-103-1t64 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhsa-runtime64-1 libhsakmt1 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libhwy1t64 libhypre-2.29.0 libibverbs1 libice6 libicu-dev libicu72 libimport-into-perl libindirect-perl libinput-bin libinput10 libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libio-tiecombine-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjack-jackd2-0 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-jquery-ui-theme-base libjs-sphinxdoc libjs-underscore libjson-maybexs-perl libjson-perl libjsoncpp25 libjxl0.8 libk5crypto3 libkeyutils1 libklu2 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack-dev liblapack3 liblcms2-2 liblerc4 liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl libllvm16t64 libllvm17t64 liblog-any-adapter-screen-perl liblog-any-perl liblog-log4perl-perl libltdl7 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzma-dev liblzo2-2 libmagic-mgc libmagic1t64 libmailtools-perl libmarkdown2 libmd4c0 libmetis5 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-perl libmono-2.0-dev libmono-accessibility4.0-cil libmono-cairo4.0-cil libmono-cecil-private-cil libmono-cil-dev libmono-codecontracts4.0-cil libmono-compilerservices-symbolwriter4.0-cil libmono-corlib4.5-cil libmono-corlib4.5-dll libmono-cscompmgd0.0-cil libmono-csharp4.0c-cil libmono-custommarshalers4.0-cil libmono-data-tds4.0-cil libmono-db2-1.0-cil libmono-debugger-soft4.0a-cil libmono-http4.0-cil libmono-i18n-cjk4.0-cil libmono-i18n-mideast4.0-cil libmono-i18n-other4.0-cil libmono-i18n-rare4.0-cil libmono-i18n-west4.0-cil libmono-i18n4.0-all libmono-i18n4.0-cil libmono-ldap4.0-cil libmono-management4.0-cil libmono-messaging-rabbitmq4.0-cil libmono-messaging4.0-cil libmono-microsoft-build-engine4.0-cil libmono-microsoft-build-framework4.0-cil libmono-microsoft-build-tasks-v4.0-4.0-cil libmono-microsoft-build-utilities-v4.0-4.0-cil libmono-microsoft-build4.0-cil libmono-microsoft-csharp4.0-cil libmono-microsoft-visualc10.0-cil libmono-microsoft-web-infrastructure1.0-cil libmono-oracle4.0-cil libmono-parallel4.0-cil libmono-peapi4.0a-cil libmono-posix4.0-cil libmono-rabbitmq4.0-cil libmono-relaxng4.0-cil libmono-security4.0-cil libmono-sharpzip4.84-cil libmono-simd4.0-cil libmono-smdiagnostics0.0-cil libmono-sqlite4.0-cil libmono-system-componentmodel-composition4.0-cil libmono-system-componentmodel-dataannotations4.0-cil libmono-system-configuration-install4.0-cil libmono-system-configuration4.0-cil libmono-system-core4.0-cil libmono-system-data-datasetextensions4.0-cil libmono-system-data-entity4.0-cil libmono-system-data-linq4.0-cil libmono-system-data-services-client4.0-cil libmono-system-data-services4.0-cil libmono-system-data4.0-cil libmono-system-deployment4.0-cil libmono-system-design4.0-cil libmono-system-drawing-design4.0-cil libmono-system-drawing4.0-cil libmono-system-dynamic4.0-cil libmono-system-enterpriseservices4.0-cil libmono-system-identitymodel-selectors4.0-cil libmono-system-identitymodel4.0-cil libmono-system-io-compression-filesystem4.0-cil libmono-system-io-compression4.0-cil libmono-system-json-microsoft4.0-cil libmono-system-json4.0-cil libmono-system-ldap-protocols4.0-cil libmono-system-ldap4.0-cil libmono-system-management4.0-cil libmono-system-messaging4.0-cil libmono-system-net-http-formatting4.0-cil libmono-system-net-http-webrequest4.0-cil libmono-system-net-http4.0-cil libmono-system-net4.0-cil libmono-system-numerics-vectors4.0-cil libmono-system-numerics4.0-cil libmono-system-reactive-core2.2-cil libmono-system-reactive-debugger2.2-cil libmono-system-reactive-experimental2.2-cil libmono-system-reactive-interfaces2.2-cil libmono-system-reactive-linq2.2-cil libmono-system-reactive-observable-aliases0.0-cil libmono-system-reactive-platformservices2.2-cil libmono-system-reactive-providers2.2-cil libmono-system-reactive-runtime-remoting2.2-cil libmono-system-reactive-windows-forms2.2-cil libmono-system-reactive-windows-threading2.2-cil libmono-system-reflection-context4.0-cil libmono-system-runtime-caching4.0-cil libmono-system-runtime-durableinstancing4.0-cil libmono-system-runtime-serialization-formatters-soap4.0-cil libmono-system-runtime-serialization4.0-cil libmono-system-runtime4.0-cil libmono-system-security4.0-cil libmono-system-servicemodel-activation4.0-cil libmono-system-servicemodel-discovery4.0-cil libmono-system-servicemodel-internals0.0-cil libmono-system-servicemodel-routing4.0-cil libmono-system-servicemodel-web4.0-cil libmono-system-servicemodel4.0a-cil libmono-system-serviceprocess4.0-cil libmono-system-threading-tasks-dataflow4.0-cil libmono-system-transactions4.0-cil libmono-system-web-abstractions4.0-cil libmono-system-web-applicationservices4.0-cil libmono-system-web-dynamicdata4.0-cil libmono-system-web-extensions-design4.0-cil libmono-system-web-extensions4.0-cil libmono-system-web-http-selfhost4.0-cil libmono-system-web-http-webhost4.0-cil libmono-system-web-http4.0-cil libmono-system-web-mobile4.0-cil libmono-system-web-mvc3.0-cil libmono-system-web-razor2.0-cil libmono-system-web-regularexpressions4.0-cil libmono-system-web-routing4.0-cil libmono-system-web-services4.0-cil libmono-system-web-webpages-deployment2.0-cil libmono-system-web-webpages-razor2.0-cil libmono-system-web-webpages2.0-cil libmono-system-web4.0-cil libmono-system-windows-forms-datavisualization4.0a-cil libmono-system-windows-forms4.0-cil libmono-system-windows4.0-cil libmono-system-workflow-activities4.0-cil libmono-system-workflow-componentmodel4.0-cil libmono-system-workflow-runtime4.0-cil libmono-system-xaml4.0-cil libmono-system-xml-linq4.0-cil libmono-system-xml-serialization4.0-cil libmono-system-xml4.0-cil libmono-system4.0-cil libmono-tasklets4.0-cil libmono-webbrowser4.0-cil libmono-webmatrix-data4.0-cil libmono-windowsbase4.0-cil libmono-xbuild-tasks4.0-cil libmonoboehm-2.0-1 libmonosgen-2.0-1 libmonosgen-2.0-dev libmoo-perl libmoox-aliases-perl libmouse-perl libmousex-nativetraits-perl libmousex-strictconstructor-perl libmp3lame0 libmpg123-0t64 libmro-compat-perl libmtdev1t64 libmumps-5.6t64 libmunge2 libnamespace-clean-perl libncurses-dev libncurses6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetaddr-ip-perl libnewlib-dev libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libnumber-compare-perl libobject-pad-perl libogg0 libopengl0 libopenmpi3t64 libopus0 libpackage-stash-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-debcontrol-perl libparse-recdescent-perl libpath-iterator-rule-perl libpath-tiny-perl libpathplan4 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcsclite1 libperl-dev libperlio-gzip-perl libperlio-utf8-strict-perl libpetsc-real3.20 libpipeline1 libpixman-1-0 libpkgconf3 libpmix2t64 libpng-dev libpng16-16t64 libpod-constants-perl libpod-parser-perl libpod-pom-perl libportaudio2 libproc-processtable-perl libproc2-0 libproxy1v5 libpsl5t64 libpsm-infinipath1 libpsm2-2 libptscotch-7.0 libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libqhull-r8.0 libqrupdate1 libqscintilla2-qt6-15 libqscintilla2-qt6-l10n libqt6core5compat6 libqt6core6t64 libqt6dbus6t64 libqt6gui6t64 libqt6help6 libqt6network6t64 libqt6opengl6t64 libqt6openglwidgets6t64 libqt6printsupport6t64 libqt6sql6t64 libqt6widgets6t64 libqt6xml6t64 librav1e0 librdmacm1t64 libreadline-dev libregexp-common-perl libregexp-pattern-license-perl libregexp-pattern-perl libregexp-wildcards-perl librhash0 librole-tiny-perl librtmp1 libsamplerate0 libscalapack-openmpi2.2 libscotch-7.0 libsensors-config libsensors5 libsereal-decoder-perl libsereal-encoder-perl libset-intspan-perl libsharpyuv0 libsm6 libsndfile1 libsoftware-copyright-perl libsoftware-license-perl libsoftware-licensemoreutils-perl libsort-versions-perl libspqr4 libssh2-1t64 libssl-dev libstrictures-perl libstring-copyright-perl libstring-escape-perl libstring-license-perl libstring-rewriteprefix-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsubunit-dev libsubunit0 libsuitesparseconfig7 libsundials-ida6 libsundials-nvecparallel-petsc6 libsundials-sunlinsol3 libsundials-sunmatrix4 libsuperlu-dist8 libsuperlu6 libsvtav1enc1d1 libsyntax-keyword-try-perl libsz2 libtcl8.6 libterm-readkey-perl libtest-exception-perl libtext-autoformat-perl libtext-glob-perl libtext-levenshtein-damerau-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-reform-perl libtext-template-perl libtext-unidecode-perl libtext-xslate-perl libthai-data libthai0 libtiff6 libtime-duration-perl libtime-moment-perl libtimedate-perl 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python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.11 python3.11-dev python3.11-minimal r-base-core r-base-dev rdfind sensible-utils shared-mime-info swig t1utils tex-common texinfo texinfo-lib tzdata ucf unzip x11-common x11proto-dev xauth xdg-utils xkb-data xorg-sgml-doctools xtrans-dev zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build libconfig-model-cursesui-perl libconfig-model-itself-perl dh-make default-jdk default-jre flit python3-build python3-installer python3-wheel doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev gnuplot-doc gsfonts graphviz-doc groff isoquery lrzip alsa-utils libasound2-plugins liblapack-doc libconfig-model-openssh-perl libterm-readline-perl-perl | libterm-readline-gnu-perl cups-common libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libfftw3-doc libfftw3-mpi-dev libgd-tools low-memory-monitor libiodbc2-dev default-libmysqlclient-dev graphicsmagick-dbg krb5-doc krb5-user libhdf5-doc libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e libheif-plugin-svtenc libdata-dump-perl libhwloc-contrib-plugins icu-doc jackd2 libjs-jquery-ui-docs liblcms2-utils libdbd-csv-perl liblog-dispatch-filerotate-perl librrds-perl libcrypt-ssleay-perl liblzma-doc libgnomeui-0 libgtk2.0-0 librsvg2-2 libgamin0 ncurses-doc libnewlib-arm-none-eabi gcc-arm-none-eabi opus-tools libscalar-number-perl pciutils pcscd libqscintilla2-doc readline-doc scalapack-doc lm-sensors libssl-doc libbareword-filehandles-perl libmultidimensional-perl tcl8.6 tk8.6 libdatetime-format-rfc3339-perl libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwacom-bin libauthen-ntlm-perl libx11-doc xapian-tools libxcb-doc bash-completion binutils-multiarch m4-doc apparmor less www-browser opencl-icd openjdk-17-jdk openjdk-17-demo openjdk-17-source libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.11-venv python3.11-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra swig-doc swig-examples Recommended packages: libconfig-model-approx-perl libconfig-model-lcdproc-perl libconfig-model-openssh-perl libconfig-model-systemd-perl libconfig-model-tkui-perl curl | wget | lynx fonts-liberation groff fonts-liberation2 alsa-ucm-conf alsa-topology-conf bzip2-doc libcgi-fast-perl libclass-c3-xs-perl bash-completion fuse libfuse-perl dbus libarchive-cpio-perl libglib2.0-data xdg-user-dirs ghostscript fonts-urw-base35 libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libhtml-format-perl libio-compress-brotli-perl javascript-common libjson-xs-perl krb5-locales liblist-someutils-xs-perl libipc-shareable-perl liblog-dispatch-perl libfreezethaw-perl libmono-btls-interface4.0-cil libgluezilla libgpm2 libmath-base85-perl libauthen-sasl-perl libsocket6-perl libpackage-stash-xs-perl libtie-ixhash-perl libpng-tools publicsuffix qt6-translations-l10n qt6-gtk-platformtheme qt6-qpa-plugins qt6-wayland libqt6sql6-sqlite | libqt6sql6-mysql | libqt6sql6-odbc | libqt6sql6-psql | libqt6sql6-ibase libre-engine-re2-perl libxstring-perl libtypes-serialiser-perl libltdl-dev mesa-vulkan-drivers | vulkan-icd libdata-dump-perl libhttp-daemon-perl libxml-sax-expat-perl cli-common mono-csharp-shell binfmt-support libopenblas0 | libblis4 pstoedit epstool octave-doc libmail-sendmail-perl psmisc r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: aglfn autoconf automake autopoint autotools-dev bsdextrautils ca-certificates ca-certificates-java ca-certificates-mono check cli-common-dev cmake cmake-data cme debhelper default-jdk-doc default-jdk-headless default-jre-headless dh-autoreconf dh-exec dh-octave dh-octave-autopkgtest dh-python dh-strip-nondeterminism diffstat doxygen dwz fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-freefont-otf gettext gettext-base gfortran gfortran-13 gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu gnuplot-data gnuplot-nox graphviz groff-base hdf5-helpers ibverbs-providers icu-devtools intltool-debian iso-codes java-common libabsl20230802 libaec-dev libaec0 libalgorithm-c3-perl libaliased-perl libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 libapp-cmd-perl libapt-pkg-perl libarchive-zip-perl libarchive13t64 libarpack2t64 libarray-intspan-perl libasound2-data libasound2t64 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libb-hooks-endofscope-perl libb-hooks-op-check-perl libb2-1 libberkeleydb-perl libblas-dev libblas3 libboolean-perl libbrotli1 libbsd0 libbtf2 libbz2-dev libcairo2 libcamd3 libcapture-tiny-perl libcarp-assert-more-perl libcbor0.10 libccolamd3 libcdt5 libcgi-pm-perl libcgraph6 libcholmod5 libclang-cpp16t64 libclang1-16t64 libclass-c3-perl libclass-data-inheritable-perl libclass-load-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-choose-perl libclone-perl libcolamd3 libcom-err2 libcombblas2.0.0t64 libconfig-model-backend-yaml-perl libconfig-model-dpkg-perl libconfig-model-perl libconfig-tiny-perl libconst-fast-perl libconvert-binhex-perl libcpanel-json-xs-perl libcups2t64 libcurl3t64-gnutls libcurl4-openssl-dev libcurl4t64 libcxsparse4 libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-section-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdatrie1 libdav1d7 libdbus-1-3 libde265-0 libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libduktape207 libdynaloader-functions-perl libedit2 libegl-mesa0 libegl1 libelf1t64 libemail-address-xs-perl libencode-locale-perl liberror-perl libevdev2 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexception-class-perl libexif12 libexpat1 libexpat1-dev libexporter-lite-perl libexporter-tiny-perl libfabric1 libfakeroot libfeature-compat-class-perl libfeature-compat-try-perl libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-mpi3 libfftw3-quad3 libfftw3-single3 libfido2-1 libfile-basedir-perl libfile-find-rule-perl libfile-homedir-perl libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libflac12t64 libfltk-gl1.3t64 libfltk1.3t64 libfmt9 libfont-ttf-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgbm1 libgd3 libgdiplus libgetopt-long-descriptive-perl libgfortran-13-dev libgfortran5 libgif7 libgl-dev libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglib2.0-0t64 libglpk40 libglu1-mesa libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphicsmagick++-q16-12t64 libgraphicsmagick-q16-3t64 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5t64 libgudev-1.0-0 libgvc6 libgvpr2 libharfbuzz0b libhash-merge-perl libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhdf5-openmpi-103-1t64 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhsa-runtime64-1 libhsakmt1 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libhwy1t64 libhypre-2.29.0 libibverbs1 libice6 libicu-dev libicu72 libimport-into-perl libindirect-perl libinput-bin libinput10 libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libio-tiecombine-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjack-jackd2-0 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-jquery-ui-theme-base libjs-sphinxdoc libjs-underscore libjson-maybexs-perl libjson-perl libjsoncpp25 libjxl0.8 libk5crypto3 libkeyutils1 libklu2 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack-dev liblapack3 liblcms2-2 liblerc4 liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl libllvm16t64 libllvm17t64 liblog-any-adapter-screen-perl liblog-any-perl liblog-log4perl-perl libltdl7 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzma-dev liblzo2-2 libmagic-mgc libmagic1t64 libmailtools-perl libmarkdown2 libmd4c0 libmetis5 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-perl libmono-2.0-dev libmono-accessibility4.0-cil libmono-cairo4.0-cil libmono-cecil-private-cil libmono-cil-dev libmono-codecontracts4.0-cil libmono-compilerservices-symbolwriter4.0-cil libmono-corlib4.5-cil libmono-corlib4.5-dll libmono-cscompmgd0.0-cil libmono-csharp4.0c-cil libmono-custommarshalers4.0-cil libmono-data-tds4.0-cil libmono-db2-1.0-cil libmono-debugger-soft4.0a-cil libmono-http4.0-cil libmono-i18n-cjk4.0-cil libmono-i18n-mideast4.0-cil libmono-i18n-other4.0-cil libmono-i18n-rare4.0-cil libmono-i18n-west4.0-cil libmono-i18n4.0-all libmono-i18n4.0-cil libmono-ldap4.0-cil libmono-management4.0-cil libmono-messaging-rabbitmq4.0-cil libmono-messaging4.0-cil libmono-microsoft-build-engine4.0-cil libmono-microsoft-build-framework4.0-cil libmono-microsoft-build-tasks-v4.0-4.0-cil libmono-microsoft-build-utilities-v4.0-4.0-cil libmono-microsoft-build4.0-cil libmono-microsoft-csharp4.0-cil libmono-microsoft-visualc10.0-cil libmono-microsoft-web-infrastructure1.0-cil libmono-oracle4.0-cil libmono-parallel4.0-cil libmono-peapi4.0a-cil libmono-posix4.0-cil libmono-rabbitmq4.0-cil libmono-relaxng4.0-cil libmono-security4.0-cil libmono-sharpzip4.84-cil libmono-simd4.0-cil libmono-smdiagnostics0.0-cil libmono-sqlite4.0-cil libmono-system-componentmodel-composition4.0-cil libmono-system-componentmodel-dataannotations4.0-cil libmono-system-configuration-install4.0-cil libmono-system-configuration4.0-cil libmono-system-core4.0-cil libmono-system-data-datasetextensions4.0-cil libmono-system-data-entity4.0-cil libmono-system-data-linq4.0-cil libmono-system-data-services-client4.0-cil libmono-system-data-services4.0-cil libmono-system-data4.0-cil libmono-system-deployment4.0-cil libmono-system-design4.0-cil libmono-system-drawing-design4.0-cil libmono-system-drawing4.0-cil libmono-system-dynamic4.0-cil libmono-system-enterpriseservices4.0-cil libmono-system-identitymodel-selectors4.0-cil libmono-system-identitymodel4.0-cil libmono-system-io-compression-filesystem4.0-cil libmono-system-io-compression4.0-cil libmono-system-json-microsoft4.0-cil libmono-system-json4.0-cil libmono-system-ldap-protocols4.0-cil libmono-system-ldap4.0-cil libmono-system-management4.0-cil libmono-system-messaging4.0-cil libmono-system-net-http-formatting4.0-cil libmono-system-net-http-webrequest4.0-cil libmono-system-net-http4.0-cil libmono-system-net4.0-cil libmono-system-numerics-vectors4.0-cil libmono-system-numerics4.0-cil libmono-system-reactive-core2.2-cil libmono-system-reactive-debugger2.2-cil libmono-system-reactive-experimental2.2-cil libmono-system-reactive-interfaces2.2-cil libmono-system-reactive-linq2.2-cil libmono-system-reactive-observable-aliases0.0-cil libmono-system-reactive-platformservices2.2-cil libmono-system-reactive-providers2.2-cil libmono-system-reactive-runtime-remoting2.2-cil libmono-system-reactive-windows-forms2.2-cil libmono-system-reactive-windows-threading2.2-cil libmono-system-reflection-context4.0-cil libmono-system-runtime-caching4.0-cil libmono-system-runtime-durableinstancing4.0-cil libmono-system-runtime-serialization-formatters-soap4.0-cil libmono-system-runtime-serialization4.0-cil libmono-system-runtime4.0-cil libmono-system-security4.0-cil libmono-system-servicemodel-activation4.0-cil libmono-system-servicemodel-discovery4.0-cil libmono-system-servicemodel-internals0.0-cil libmono-system-servicemodel-routing4.0-cil libmono-system-servicemodel-web4.0-cil libmono-system-servicemodel4.0a-cil libmono-system-serviceprocess4.0-cil libmono-system-threading-tasks-dataflow4.0-cil libmono-system-transactions4.0-cil libmono-system-web-abstractions4.0-cil libmono-system-web-applicationservices4.0-cil libmono-system-web-dynamicdata4.0-cil libmono-system-web-extensions-design4.0-cil libmono-system-web-extensions4.0-cil libmono-system-web-http-selfhost4.0-cil libmono-system-web-http-webhost4.0-cil libmono-system-web-http4.0-cil libmono-system-web-mobile4.0-cil libmono-system-web-mvc3.0-cil libmono-system-web-razor2.0-cil libmono-system-web-regularexpressions4.0-cil libmono-system-web-routing4.0-cil libmono-system-web-services4.0-cil libmono-system-web-webpages-deployment2.0-cil libmono-system-web-webpages-razor2.0-cil libmono-system-web-webpages2.0-cil libmono-system-web4.0-cil libmono-system-windows-forms-datavisualization4.0a-cil libmono-system-windows-forms4.0-cil libmono-system-windows4.0-cil libmono-system-workflow-activities4.0-cil libmono-system-workflow-componentmodel4.0-cil libmono-system-workflow-runtime4.0-cil libmono-system-xaml4.0-cil libmono-system-xml-linq4.0-cil libmono-system-xml-serialization4.0-cil libmono-system-xml4.0-cil libmono-system4.0-cil libmono-tasklets4.0-cil libmono-webbrowser4.0-cil libmono-webmatrix-data4.0-cil libmono-windowsbase4.0-cil libmono-xbuild-tasks4.0-cil libmonoboehm-2.0-1 libmonosgen-2.0-1 libmonosgen-2.0-dev libmoo-perl libmoox-aliases-perl libmouse-perl libmousex-nativetraits-perl libmousex-strictconstructor-perl libmp3lame0 libmpg123-0t64 libmro-compat-perl libmtdev1t64 libmumps-5.6t64 libmunge2 libnamespace-clean-perl libncurses-dev libncurses6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetaddr-ip-perl libnewlib-dev libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libnumber-compare-perl libobject-pad-perl libogg0 libopengl0 libopenmpi3t64 libopus0 libpackage-stash-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-debcontrol-perl libparse-recdescent-perl libpath-iterator-rule-perl libpath-tiny-perl libpathplan4 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcsclite1 libperl-dev libperlio-gzip-perl libperlio-utf8-strict-perl libpetsc-real3.20 libpipeline1 libpixman-1-0 libpkgconf3 libpmix2t64 libpng-dev libpng16-16t64 libpod-constants-perl libpod-parser-perl libpod-pom-perl libportaudio2 libproc-processtable-perl libproc2-0 libproxy1v5 libpsl5t64 libpsm-infinipath1 libpsm2-2 libptscotch-7.0 libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libqhull-r8.0 libqrupdate1 libqscintilla2-qt6-15 libqscintilla2-qt6-l10n libqt6core5compat6 libqt6core6t64 libqt6dbus6t64 libqt6gui6t64 libqt6help6 libqt6network6t64 libqt6opengl6t64 libqt6openglwidgets6t64 libqt6printsupport6t64 libqt6sql6t64 libqt6widgets6t64 libqt6xml6t64 librav1e0 librdmacm1t64 libreadline-dev libregexp-common-perl libregexp-pattern-license-perl libregexp-pattern-perl libregexp-wildcards-perl librhash0 librole-tiny-perl librtmp1 libsamplerate0 libscalapack-openmpi2.2 libscotch-7.0 libsensors-config libsensors5 libsereal-decoder-perl libsereal-encoder-perl libset-intspan-perl libsharpyuv0 libsm6 libsndfile1 libsoftware-copyright-perl libsoftware-license-perl libsoftware-licensemoreutils-perl libsort-versions-perl libspqr4 libssh2-1t64 libssl-dev libstrictures-perl libstring-copyright-perl libstring-escape-perl libstring-license-perl libstring-rewriteprefix-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsubunit-dev libsubunit0 libsuitesparseconfig7 libsundials-ida6 libsundials-nvecparallel-petsc6 libsundials-sunlinsol3 libsundials-sunmatrix4 libsuperlu-dist8 libsuperlu6 libsvtav1enc1d1 libsyntax-keyword-try-perl libsz2 libtcl8.6 libterm-readkey-perl libtest-exception-perl libtext-autoformat-perl libtext-glob-perl libtext-levenshtein-damerau-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-reform-perl libtext-template-perl libtext-unidecode-perl libtext-xslate-perl libthai-data libthai0 libtiff6 libtime-duration-perl libtime-moment-perl libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtoml-tiny-perl libtool libtrilinos-amesos-13.2 libtrilinos-aztecoo-13.2 libtrilinos-epetra-13.2 libtrilinos-epetraext-13.2 libtrilinos-galeri-13.2 libtrilinos-ifpack-13.2 libtrilinos-kokkos-13.2 libtrilinos-ml-13.2 libtrilinos-teuchos-13.2 libtrilinos-trilinosss-13.2 libtrilinos-triutils-13.2 libtrilinos-zoltan-13.2 libtry-tiny-perl libts0t64 libuchardet0 libucx0 libumfpack6 libunicode-utf8-perl liburi-perl libuv1t64 libvariable-magic-perl libvorbis0a libvorbisenc2 libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 libwebp7 libwebpmux3 libwmflite-0.2-7 libwww-mechanize-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-dev libx11-xcb1 libxapian30 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xkb1 libxcb1 libxcb1-dev libxcursor1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml-dom-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxml2-dev libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxs-parse-keyword-perl libxs-parse-sublike-perl libxshmfence1 libxss1 libxt6t64 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-pp-perl libyaml-tiny-perl libyuv0 libz3-4 licensecheck lintian lzop m4 man-db media-types mono-4.0-gac mono-devel mono-gac mono-mcs mono-runtime mono-runtime-common mono-runtime-sgen mono-utils mono-xbuild mpi-default-bin netbase ocl-icd-libopencl1 octave octave-common octave-dev openjdk-17-doc openjdk-17-jdk-headless openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl patchutils perl-openssl-defaults pkg-config pkgconf pkgconf-bin plzip po-debconf procps python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.11 python3.11-dev python3.11-minimal r-base-core r-base-dev rdfind sbuild-build-depends-main-dummy sensible-utils shared-mime-info swig t1utils tex-common texinfo texinfo-lib tzdata ucf unzip x11-common x11proto-dev xauth xdg-utils xkb-data xorg-sgml-doctools xtrans-dev zip zlib1g-dev 0 upgraded, 792 newly installed, 0 to remove and 0 not upgraded. Need to get 542 MB of archives. After this operation, 2202 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1032 B] Get:2 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:6 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get:8 http://localhost:3142/debian unstable/main amd64 mono-runtime-common amd64 6.8.0.105+dfsg-3.6 [1165 kB] Get:9 http://localhost:3142/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libmono-corlib4.5-dll all 6.8.0.105+dfsg-3.6 [1254 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libmono-system-core4.0-cil all 6.8.0.105+dfsg-3.6 [304 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libmono-system-numerics4.0-cil all 6.8.0.105+dfsg-3.6 [51.2 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libmono-system-xml4.0-cil all 6.8.0.105+dfsg-3.6 [818 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libmono-system-security4.0-cil all 6.8.0.105+dfsg-3.6 [116 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libmono-system-configuration4.0-cil all 6.8.0.105+dfsg-3.6 [57.4 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libmono-system4.0-cil all 6.8.0.105+dfsg-3.6 [805 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libmono-security4.0-cil all 6.8.0.105+dfsg-3.6 [97.8 kB] Get:18 http://localhost:3142/debian unstable/main amd64 mono-4.0-gac all 6.8.0.105+dfsg-3.6 [156 kB] Get:19 http://localhost:3142/debian unstable/main amd64 mono-gac all 6.8.0.105+dfsg-3.6 [21.3 kB] Get:20 http://localhost:3142/debian unstable/main amd64 mono-runtime-sgen amd64 6.8.0.105+dfsg-3.6 [1697 kB] Get:21 http://localhost:3142/debian unstable/main amd64 mono-runtime amd64 6.8.0.105+dfsg-3.6 [17.2 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libmono-corlib4.5-cil all 6.8.0.105+dfsg-3.6 [15.5 kB] Get:23 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:24 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get:25 http://localhost:3142/debian unstable/main amd64 ca-certificates-mono all 6.8.0.105+dfsg-3.6 [20.5 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:28 http://localhost:3142/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:29 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:30 http://localhost:3142/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get:31 http://localhost:3142/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get:33 http://localhost:3142/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get:35 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get:37 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get:38 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:41 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:42 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:44 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get:45 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.1-4 [95.7 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:47 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libedit2 amd64 3.1-20240517-1 [93.3 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-1.2 [28.2 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libfido2-1 amd64 1.14.0-1+b2 [77.7 kB] Get:52 http://localhost:3142/debian unstable/main amd64 openssh-client amd64 1:9.7p1-5 [964 kB] Get:53 http://localhost:3142/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:54 http://localhost:3142/debian unstable/main amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get:55 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:56 http://localhost:3142/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:57 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:58 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:59 http://localhost:3142/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get:60 http://localhost:3142/debian unstable/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libsubunit0 amd64 1.4.2-3 [6160 B] Get:62 http://localhost:3142/debian unstable/main amd64 libsubunit-dev amd64 1.4.2-3 [7080 B] Get:63 http://localhost:3142/debian unstable/main amd64 check amd64 0.15.2-2+b1 [113 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:66 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:69 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:70 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:71 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get:74 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:75 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:76 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:77 http://localhost:3142/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libmonoboehm-2.0-1 amd64 6.8.0.105+dfsg-3.6 [1619 kB] Get:79 http://localhost:3142/debian unstable/main amd64 mono-utils amd64 6.8.0.105+dfsg-3.6 [5153 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libmono-cecil-private-cil all 6.8.0.105+dfsg-3.6 [201 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libmono-codecontracts4.0-cil all 6.8.0.105+dfsg-3.6 [205 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libmono-compilerservices-symbolwriter4.0-cil all 6.8.0.105+dfsg-3.6 [31.0 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libmono-peapi4.0a-cil all 6.8.0.105+dfsg-3.6 [50.3 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libmono-relaxng4.0-cil all 6.8.0.105+dfsg-3.6 [83.0 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libmono-system-componentmodel-composition4.0-cil all 6.8.0.105+dfsg-3.6 [100.0 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libmono-system-componentmodel-dataannotations4.0-cil all 6.8.0.105+dfsg-3.6 [40.0 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libmono-system-configuration-install4.0-cil all 6.8.0.105+dfsg-3.6 [22.5 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libmono-system-transactions4.0-cil all 6.8.0.105+dfsg-3.6 [26.3 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libmono-system-enterpriseservices4.0-cil all 6.8.0.105+dfsg-3.6 [29.5 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libmono-system-data4.0-cil all 6.8.0.105+dfsg-3.6 [581 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libmono-system-data-datasetextensions4.0-cil all 6.8.0.105+dfsg-3.6 [25.1 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get:95 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:96 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:97 http://localhost:3142/debian unstable/main amd64 fonts-freefont-otf all 20211204+svn4273-2 [4328 kB] Get:98 http://localhost:3142/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libexif12 amd64 0.6.24-1+b1 [402 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libgif7 amd64 5.2.2-1 [43.9 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.80.2-2 [1485 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get:117 http://localhost:3142/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:119 http://localhost:3142/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:120 http://localhost:3142/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libpango-1.0-0 amd64 1.52.2+ds-1 [218 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.52.2+ds-1 [48.1 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.52.2+ds-1 [35.0 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:127 http://localhost:3142/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libgdiplus amd64 6.1+dfsg-1.1 [162 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libmono-system-drawing4.0-cil all 6.8.0.105+dfsg-3.6 [152 kB] Get:133 http://localhost:3142/debian unstable/main amd64 libmono-system-servicemodel-internals0.0-cil all 6.8.0.105+dfsg-3.6 [84.9 kB] Get:134 http://localhost:3142/debian unstable/main amd64 libmono-system-runtime-serialization4.0-cil all 6.8.0.105+dfsg-3.6 [254 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libmono-system-web-applicationservices4.0-cil all 6.8.0.105+dfsg-3.6 [25.6 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libmono-system-identitymodel4.0-cil all 6.8.0.105+dfsg-3.6 [56.9 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libmono-system-io-compression4.0-cil all 6.8.0.105+dfsg-3.6 [59.4 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libmono-system-io-compression-filesystem4.0-cil all 6.8.0.105+dfsg-3.6 [20.9 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libmono-system-net-http4.0-cil all 6.8.0.105+dfsg-3.6 [112 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libmono-system-runtime-serialization-formatters-soap4.0-cil all 6.8.0.105+dfsg-3.6 [29.5 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libmono-sqlite4.0-cil all 6.8.0.105+dfsg-3.6 [60.8 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libmono-accessibility4.0-cil all 6.8.0.105+dfsg-3.6 [18.3 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libmono-posix4.0-cil all 6.8.0.105+dfsg-3.6 [84.9 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libmono-webbrowser4.0-cil all 6.8.0.105+dfsg-3.6 [60.9 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libmono-i18n4.0-cil all 6.8.0.105+dfsg-3.6 [25.4 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libmono-i18n-west4.0-cil all 6.8.0.105+dfsg-3.6 [28.5 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libmono-system-windows-forms4.0-cil all 6.8.0.105+dfsg-3.6 [815 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libmono-system-design4.0-cil all 6.8.0.105+dfsg-3.6 [107 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libmono-ldap4.0-cil all 6.8.0.105+dfsg-3.6 [95.5 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libmono-system-ldap4.0-cil all 6.8.0.105+dfsg-3.6 [44.1 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libmono-system-web-services4.0-cil all 6.8.0.105+dfsg-3.6 [175 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libmono-system-web4.0-cil all 6.8.0.105+dfsg-3.6 [757 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libmono-system-runtime4.0-cil all 6.8.0.105+dfsg-3.6 [58.6 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libmono-system-identitymodel-selectors4.0-cil all 6.8.0.105+dfsg-3.6 [19.9 kB] Get:155 http://localhost:3142/debian unstable/main amd64 libmono-messaging4.0-cil all 6.8.0.105+dfsg-3.6 [26.1 kB] Get:156 http://localhost:3142/debian unstable/main amd64 libmono-system-messaging4.0-cil all 6.8.0.105+dfsg-3.6 [38.3 kB] Get:157 http://localhost:3142/debian unstable/main amd64 libmono-system-servicemodel-activation4.0-cil all 6.8.0.105+dfsg-3.6 [18.7 kB] Get:158 http://localhost:3142/debian unstable/main amd64 libmono-system-servicemodel4.0a-cil all 6.8.0.105+dfsg-3.6 [381 kB] Get:159 http://localhost:3142/debian unstable/main amd64 libmono-system-serviceprocess4.0-cil all 6.8.0.105+dfsg-3.6 [31.3 kB] Get:160 http://localhost:3142/debian unstable/main amd64 libmono-system-xml-linq4.0-cil all 6.8.0.105+dfsg-3.6 [59.9 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libmono-microsoft-csharp4.0-cil all 6.8.0.105+dfsg-3.6 [119 kB] Get:162 http://localhost:3142/debian unstable/main amd64 mono-mcs all 6.8.0.105+dfsg-3.6 [541 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libmono-microsoft-build-framework4.0-cil all 6.8.0.105+dfsg-3.6 [24.8 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libmono-microsoft-build-utilities-v4.0-4.0-cil all 6.8.0.105+dfsg-3.6 [35.0 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libmono-microsoft-build-engine4.0-cil all 6.8.0.105+dfsg-3.6 [93.4 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libmono-xbuild-tasks4.0-cil all 6.8.0.105+dfsg-3.6 [28.5 kB] Get:167 http://localhost:3142/debian unstable/main amd64 libmono-microsoft-build-tasks-v4.0-4.0-cil all 6.8.0.105+dfsg-3.6 [72.1 kB] Get:168 http://localhost:3142/debian unstable/main amd64 mono-xbuild all 6.8.0.105+dfsg-3.6 [457 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libmono-cairo4.0-cil all 6.8.0.105+dfsg-3.6 [34.4 kB] Get:170 http://localhost:3142/debian unstable/main amd64 libmono-cscompmgd0.0-cil all 6.8.0.105+dfsg-3.6 [21.0 kB] Get:171 http://localhost:3142/debian unstable/main amd64 libmono-csharp4.0c-cil all 6.8.0.105+dfsg-3.6 [406 kB] Get:172 http://localhost:3142/debian unstable/main amd64 libmono-custommarshalers4.0-cil all 6.8.0.105+dfsg-3.6 [19.0 kB] Get:173 http://localhost:3142/debian unstable/main amd64 libmono-data-tds4.0-cil all 6.8.0.105+dfsg-3.6 [48.6 kB] Get:174 http://localhost:3142/debian unstable/main amd64 libmono-db2-1.0-cil all 6.8.0.105+dfsg-3.6 [39.5 kB] Get:175 http://localhost:3142/debian unstable/main amd64 libmono-debugger-soft4.0a-cil all 6.8.0.105+dfsg-3.6 [71.0 kB] Get:176 http://localhost:3142/debian unstable/main amd64 libmono-sharpzip4.84-cil all 6.8.0.105+dfsg-3.6 [63.6 kB] Get:177 http://localhost:3142/debian unstable/main amd64 libmono-http4.0-cil all 6.8.0.105+dfsg-3.6 [25.3 kB] Get:178 http://localhost:3142/debian unstable/main amd64 libmono-i18n-cjk4.0-cil all 6.8.0.105+dfsg-3.6 [241 kB] Get:179 http://localhost:3142/debian unstable/main amd64 libmono-i18n-mideast4.0-cil all 6.8.0.105+dfsg-3.6 [22.5 kB] Get:180 http://localhost:3142/debian unstable/main amd64 libmono-i18n-other4.0-cil all 6.8.0.105+dfsg-3.6 [23.9 kB] Get:181 http://localhost:3142/debian unstable/main amd64 libmono-i18n-rare4.0-cil all 6.8.0.105+dfsg-3.6 [40.2 kB] Get:182 http://localhost:3142/debian unstable/main amd64 libmono-i18n4.0-all all 6.8.0.105+dfsg-3.6 [15.0 kB] Get:183 http://localhost:3142/debian unstable/main amd64 libmono-management4.0-cil all 6.8.0.105+dfsg-3.6 [19.4 kB] Get:184 http://localhost:3142/debian unstable/main amd64 libmono-rabbitmq4.0-cil all 6.8.0.105+dfsg-3.6 [95.8 kB] Get:185 http://localhost:3142/debian unstable/main amd64 libmono-messaging-rabbitmq4.0-cil all 6.8.0.105+dfsg-3.6 [26.7 kB] Get:186 http://localhost:3142/debian unstable/main amd64 libmono-microsoft-build4.0-cil all 6.8.0.105+dfsg-3.6 [103 kB] Get:187 http://localhost:3142/debian unstable/main amd64 libmono-microsoft-visualc10.0-cil all 6.8.0.105+dfsg-3.6 [17.8 kB] Get:188 http://localhost:3142/debian unstable/main amd64 libmono-microsoft-web-infrastructure1.0-cil all 6.8.0.105+dfsg-3.6 [20.2 kB] Get:189 http://localhost:3142/debian unstable/main amd64 libmono-oracle4.0-cil all 6.8.0.105+dfsg-3.6 [67.5 kB] Get:190 http://localhost:3142/debian unstable/main amd64 libmono-parallel4.0-cil all 6.8.0.105+dfsg-3.6 [25.8 kB] Get:191 http://localhost:3142/debian unstable/main amd64 libmono-simd4.0-cil all 6.8.0.105+dfsg-3.6 [30.0 kB] Get:192 http://localhost:3142/debian unstable/main amd64 libmono-smdiagnostics0.0-cil all 6.8.0.105+dfsg-3.6 [30.5 kB] Get:193 http://localhost:3142/debian unstable/main amd64 libmono-system-data-entity4.0-cil all 6.8.0.105+dfsg-3.6 [841 kB] Get:194 http://localhost:3142/debian unstable/main amd64 libmono-system-data-linq4.0-cil all 6.8.0.105+dfsg-3.6 [203 kB] Get:195 http://localhost:3142/debian unstable/main amd64 libmono-system-data-services-client4.0-cil all 6.8.0.105+dfsg-3.6 [142 kB] Get:196 http://localhost:3142/debian unstable/main amd64 libmono-system-web-extensions4.0-cil all 6.8.0.105+dfsg-3.6 [166 kB] Get:197 http://localhost:3142/debian unstable/main amd64 libmono-system-servicemodel-web4.0-cil all 6.8.0.105+dfsg-3.6 [43.0 kB] Get:198 http://localhost:3142/debian unstable/main amd64 libmono-system-data-services4.0-cil all 6.8.0.105+dfsg-3.6 [30.2 kB] Get:199 http://localhost:3142/debian unstable/main amd64 libmono-system-deployment4.0-cil all 6.8.0.105+dfsg-3.6 [17.7 kB] Get:200 http://localhost:3142/debian unstable/main amd64 libmono-system-drawing-design4.0-cil all 6.8.0.105+dfsg-3.6 [25.0 kB] Get:201 http://localhost:3142/debian unstable/main amd64 libmono-system-dynamic4.0-cil all 6.8.0.105+dfsg-3.6 [46.9 kB] Get:202 http://localhost:3142/debian unstable/main amd64 libmono-system-json4.0-cil all 6.8.0.105+dfsg-3.6 [25.5 kB] Get:203 http://localhost:3142/debian unstable/main amd64 libmono-system-json-microsoft4.0-cil all 6.8.0.105+dfsg-3.6 [34.6 kB] Get:204 http://localhost:3142/debian unstable/main amd64 libmono-system-ldap-protocols4.0-cil all 6.8.0.105+dfsg-3.6 [33.5 kB] Get:205 http://localhost:3142/debian unstable/main amd64 libmono-system-management4.0-cil all 6.8.0.105+dfsg-3.6 [29.3 kB] Get:206 http://localhost:3142/debian unstable/main amd64 libmono-system-net4.0-cil all 6.8.0.105+dfsg-3.6 [18.6 kB] Get:207 http://localhost:3142/debian unstable/main amd64 libmono-system-net-http-formatting4.0-cil all 6.8.0.105+dfsg-3.6 [175 kB] Get:208 http://localhost:3142/debian unstable/main amd64 libmono-system-net-http-webrequest4.0-cil all 6.8.0.105+dfsg-3.6 [24.3 kB] Get:209 http://localhost:3142/debian unstable/main amd64 libmono-system-numerics-vectors4.0-cil all 6.8.0.105+dfsg-3.6 [18.0 kB] Get:210 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-interfaces2.2-cil all 6.8.0.105+dfsg-3.6 [18.0 kB] Get:211 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-core2.2-cil all 6.8.0.105+dfsg-3.6 [49.2 kB] Get:212 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-linq2.2-cil all 6.8.0.105+dfsg-3.6 [160 kB] Get:213 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-debugger2.2-cil all 6.8.0.105+dfsg-3.6 [17.0 kB] Get:214 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-experimental2.2-cil all 6.8.0.105+dfsg-3.6 [25.2 kB] Get:215 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-providers2.2-cil all 6.8.0.105+dfsg-3.6 [54.0 kB] Get:216 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-observable-aliases0.0-cil all 6.8.0.105+dfsg-3.6 [17.9 kB] Get:217 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-platformservices2.2-cil all 6.8.0.105+dfsg-3.6 [24.5 kB] Get:218 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-runtime-remoting2.2-cil all 6.8.0.105+dfsg-3.6 [18.8 kB] Get:219 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-windows-forms2.2-cil all 6.8.0.105+dfsg-3.6 [18.9 kB] Get:220 http://localhost:3142/debian unstable/main amd64 libmono-system-xaml4.0-cil all 6.8.0.105+dfsg-3.6 [77.1 kB] Get:221 http://localhost:3142/debian unstable/main amd64 libmono-windowsbase4.0-cil all 6.8.0.105+dfsg-3.6 [67.3 kB] Get:222 http://localhost:3142/debian unstable/main amd64 libmono-system-reactive-windows-threading2.2-cil all 6.8.0.105+dfsg-3.6 [20.2 kB] Get:223 http://localhost:3142/debian unstable/main amd64 libmono-system-reflection-context4.0-cil all 6.8.0.105+dfsg-3.6 [18.4 kB] Get:224 http://localhost:3142/debian unstable/main amd64 libmono-system-runtime-caching4.0-cil all 6.8.0.105+dfsg-3.6 [41.5 kB] Get:225 http://localhost:3142/debian unstable/main amd64 libmono-system-runtime-durableinstancing4.0-cil all 6.8.0.105+dfsg-3.6 [49.2 kB] Get:226 http://localhost:3142/debian unstable/main amd64 libmono-system-servicemodel-discovery4.0-cil all 6.8.0.105+dfsg-3.6 [55.8 kB] Get:227 http://localhost:3142/debian unstable/main amd64 libmono-system-servicemodel-routing4.0-cil all 6.8.0.105+dfsg-3.6 [26.1 kB] Get:228 http://localhost:3142/debian unstable/main amd64 libmono-system-threading-tasks-dataflow4.0-cil all 6.8.0.105+dfsg-3.6 [72.3 kB] Get:229 http://localhost:3142/debian unstable/main amd64 libmono-system-web-abstractions4.0-cil all 6.8.0.105+dfsg-3.6 [18.1 kB] Get:230 http://localhost:3142/debian unstable/main amd64 libmono-system-web-dynamicdata4.0-cil all 6.8.0.105+dfsg-3.6 [39.7 kB] Get:231 http://localhost:3142/debian unstable/main amd64 libmono-system-web-extensions-design4.0-cil all 6.8.0.105+dfsg-3.6 [19.1 kB] Get:232 http://localhost:3142/debian unstable/main amd64 libmono-system-web-http4.0-cil all 6.8.0.105+dfsg-3.6 [125 kB] Get:233 http://localhost:3142/debian unstable/main amd64 libmono-system-web-http-selfhost4.0-cil all 6.8.0.105+dfsg-3.6 [47.1 kB] Get:234 http://localhost:3142/debian unstable/main amd64 libmono-system-web-http-webhost4.0-cil all 6.8.0.105+dfsg-3.6 [37.4 kB] Get:235 http://localhost:3142/debian unstable/main amd64 libmono-system-web-mobile4.0-cil all 6.8.0.105+dfsg-3.6 [17.7 kB] Get:236 http://localhost:3142/debian unstable/main amd64 libmono-system-web-razor2.0-cil all 6.8.0.105+dfsg-3.6 [98.7 kB] Get:237 http://localhost:3142/debian unstable/main amd64 libmono-system-web-webpages-deployment2.0-cil all 6.8.0.105+dfsg-3.6 [28.9 kB] Get:238 http://localhost:3142/debian unstable/main amd64 libmono-system-web-webpages2.0-cil all 6.8.0.105+dfsg-3.6 [81.9 kB] Get:239 http://localhost:3142/debian unstable/main amd64 libmono-system-web-webpages-razor2.0-cil all 6.8.0.105+dfsg-3.6 [28.4 kB] Get:240 http://localhost:3142/debian unstable/main amd64 libmono-system-web-mvc3.0-cil all 6.8.0.105+dfsg-3.6 [145 kB] Get:241 http://localhost:3142/debian unstable/main amd64 libmono-system-web-regularexpressions4.0-cil all 6.8.0.105+dfsg-3.6 [17.8 kB] Get:242 http://localhost:3142/debian unstable/main amd64 libmono-system-web-routing4.0-cil all 6.8.0.105+dfsg-3.6 [18.0 kB] Get:243 http://localhost:3142/debian unstable/main amd64 libmono-system-windows4.0-cil all 6.8.0.105+dfsg-3.6 [17.8 kB] Get:244 http://localhost:3142/debian unstable/main amd64 libmono-system-windows-forms-datavisualization4.0a-cil all 6.8.0.105+dfsg-3.6 [52.2 kB] Get:245 http://localhost:3142/debian unstable/main amd64 libmono-system-workflow-activities4.0-cil all 6.8.0.105+dfsg-3.6 [17.8 kB] Get:246 http://localhost:3142/debian unstable/main amd64 libmono-system-workflow-componentmodel4.0-cil all 6.8.0.105+dfsg-3.6 [17.8 kB] Get:247 http://localhost:3142/debian unstable/main amd64 libmono-system-workflow-runtime4.0-cil all 6.8.0.105+dfsg-3.6 [17.7 kB] Get:248 http://localhost:3142/debian unstable/main amd64 libmono-system-xml-serialization4.0-cil all 6.8.0.105+dfsg-3.6 [17.6 kB] Get:249 http://localhost:3142/debian unstable/main amd64 libmono-tasklets4.0-cil all 6.8.0.105+dfsg-3.6 [18.0 kB] Get:250 http://localhost:3142/debian unstable/main amd64 libmono-webmatrix-data4.0-cil all 6.8.0.105+dfsg-3.6 [20.9 kB] Get:251 http://localhost:3142/debian unstable/main amd64 libmono-cil-dev all 6.8.0.105+dfsg-3.6 [17.5 kB] Get:252 http://localhost:3142/debian unstable/main amd64 libmonosgen-2.0-1 amd64 6.8.0.105+dfsg-3.6 [1706 kB] Get:253 http://localhost:3142/debian unstable/main amd64 libmonosgen-2.0-dev amd64 6.8.0.105+dfsg-3.6 [1973 kB] Get:254 http://localhost:3142/debian unstable/main amd64 libmono-2.0-dev amd64 6.8.0.105+dfsg-3.6 [50.6 kB] Get:255 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get:256 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get:257 http://localhost:3142/debian unstable/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get:258 http://localhost:3142/debian unstable/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Get:259 http://localhost:3142/debian unstable/main amd64 mono-devel all 6.8.0.105+dfsg-3.6 [23.6 MB] Get:260 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:261 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:262 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:263 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:264 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:265 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get:266 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.82-1 [98.9 kB] Get:267 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:268 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get:269 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:270 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:271 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:272 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:273 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:274 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:275 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:276 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:277 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:278 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:279 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:280 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:281 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get:282 http://localhost:3142/debian unstable/main amd64 libxml-parser-perl amd64 2.47-1+b2 [199 kB] Get:283 http://localhost:3142/debian unstable/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get:284 http://localhost:3142/debian unstable/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get:285 http://localhost:3142/debian unstable/main amd64 libxml-dom-perl all 1.46-2 [152 kB] Get:286 http://localhost:3142/debian unstable/main amd64 cli-common-dev all 0.10+nmu2 [32.4 kB] Get:287 http://localhost:3142/debian unstable/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get:288 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get:289 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:290 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:291 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get:292 http://localhost:3142/debian unstable/main amd64 libcurl4t64 amd64 8.8.0-1 [441 kB] Get:293 http://localhost:3142/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get:294 http://localhost:3142/debian unstable/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get:295 http://localhost:3142/debian unstable/main amd64 libuv1t64 amd64 1.48.0-4 [148 kB] Get:296 http://localhost:3142/debian unstable/main amd64 cmake-data all 3.29.3-1 [2167 kB] Get:297 http://localhost:3142/debian unstable/main amd64 cmake amd64 3.29.3-1+b1 [10.7 MB] Get:298 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:299 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3 [24.0 kB] Get:300 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:301 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:302 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b1 [10.6 kB] Get:303 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:304 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1 [15.9 kB] Get:305 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b3 [22.4 kB] Get:306 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:307 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:308 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:309 http://localhost:3142/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get:310 http://localhost:3142/debian unstable/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:311 http://localhost:3142/debian unstable/main amd64 libparams-validate-perl amd64 1.31-2+b2 [63.7 kB] Get:312 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:313 http://localhost:3142/debian unstable/main amd64 libgetopt-long-descriptive-perl all 0.111-1 [27.8 kB] Get:314 http://localhost:3142/debian unstable/main amd64 libio-tiecombine-perl all 1.005-3 [10.8 kB] Get:315 http://localhost:3142/debian unstable/main amd64 libmodule-pluggable-perl all 5.2-5 [23.0 kB] Get:316 http://localhost:3142/debian unstable/main amd64 libstring-rewriteprefix-perl all 0.009-1 [7140 B] Get:317 http://localhost:3142/debian unstable/main amd64 libapp-cmd-perl all 0.336-1 [65.8 kB] Get:318 http://localhost:3142/debian unstable/main amd64 libboolean-perl all 0.46-3 [9924 B] Get:319 http://localhost:3142/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:320 http://localhost:3142/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:321 http://localhost:3142/debian unstable/main amd64 libcarp-assert-more-perl all 2.4.0-1 [20.2 kB] Get:322 http://localhost:3142/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:323 http://localhost:3142/debian unstable/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:324 http://localhost:3142/debian unstable/main amd64 libclone-choose-perl all 0.010-2 [8676 B] Get:325 http://localhost:3142/debian unstable/main amd64 libhash-merge-perl all 0.302-1 [14.7 kB] Get:326 http://localhost:3142/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:327 http://localhost:3142/debian unstable/main amd64 libexporter-tiny-perl all 1.006002-1 [38.7 kB] Get:328 http://localhost:3142/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-4+b1 [42.3 kB] Get:329 http://localhost:3142/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:330 http://localhost:3142/debian unstable/main amd64 liblog-log4perl-perl all 1.57-1 [367 kB] Get:331 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b5 [143 kB] Get:332 http://localhost:3142/debian unstable/main amd64 libmousex-nativetraits-perl all 1.09-3 [53.5 kB] Get:333 http://localhost:3142/debian unstable/main amd64 libmousex-strictconstructor-perl all 0.02-3 [5304 B] Get:334 http://localhost:3142/debian unstable/main amd64 libparse-recdescent-perl all 1.967015+dfsg-4 [147 kB] Get:335 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:336 http://localhost:3142/debian unstable/main amd64 libpod-pom-perl all 2.01-4 [65.0 kB] Get:337 http://localhost:3142/debian unstable/main amd64 libregexp-common-perl all 2017060201-3 [175 kB] Get:338 http://localhost:3142/debian unstable/main amd64 libyaml-tiny-perl all 1.74-1 [30.7 kB] Get:339 http://localhost:3142/debian unstable/main amd64 libconfig-model-perl all 2.153-3 [448 kB] Get:340 http://localhost:3142/debian unstable/main amd64 libyaml-pp-perl all 0.38.0-1 [109 kB] Get:341 http://localhost:3142/debian unstable/main amd64 cme all 1.040-1 [68.8 kB] Get:342 http://localhost:3142/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:343 http://localhost:3142/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:344 http://localhost:3142/debian unstable/main amd64 libjs-jquery-ui-theme-base all 1.12.1+dfsg-1.1 [44.3 kB] Get:345 http://localhost:3142/debian unstable/main amd64 openjdk-17-doc all 17.0.11+9-1 [12.8 MB] Get:346 http://localhost:3142/debian unstable/main amd64 default-jdk-doc amd64 2:1.17-75 [3148 B] Get:347 http://localhost:3142/debian unstable/main amd64 java-common all 0.75 [6640 B] Get:348 http://localhost:3142/debian unstable/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:349 http://localhost:3142/debian unstable/main amd64 libnspr4 amd64 2:4.35-1.1+b1 [109 kB] Get:350 http://localhost:3142/debian unstable/main amd64 libnss3 amd64 2:3.100-1 [1406 kB] Get:351 http://localhost:3142/debian unstable/main amd64 libpcsclite1 amd64 2.2.3-1 [54.9 kB] Get:352 http://localhost:3142/debian unstable/main amd64 openjdk-17-jre-headless amd64 17.0.11+9-1 [43.8 MB] Get:353 http://localhost:3142/debian unstable/main amd64 default-jre-headless amd64 2:1.17-75 [3068 B] Get:354 http://localhost:3142/debian unstable/main amd64 openjdk-17-jdk-headless amd64 17.0.11+9-1 [71.4 MB] Get:355 http://localhost:3142/debian unstable/main amd64 default-jdk-headless amd64 2:1.17-75 [1108 B] Get:356 http://localhost:3142/debian unstable/main amd64 dh-exec amd64 0.30 [25.6 kB] Get:357 http://localhost:3142/debian unstable/main amd64 gnuplot-data all 6.0.0+dfsg1-3 [72.3 kB] Get:358 http://localhost:3142/debian unstable/main amd64 libaom3 amd64 3.8.2-2 [1869 kB] Get:359 http://localhost:3142/debian unstable/main amd64 libdav1d7 amd64 1.4.2-1 [551 kB] Get:360 http://localhost:3142/debian unstable/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get:361 http://localhost:3142/debian unstable/main amd64 libgav1-1 amd64 0.19.0-2+b1 [351 kB] Get:362 http://localhost:3142/debian unstable/main amd64 librav1e0 amd64 0.7.1-2 [900 kB] Get:363 http://localhost:3142/debian unstable/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB] Get:364 http://localhost:3142/debian unstable/main amd64 libyuv0 amd64 0.0.1888.20240509-4 [170 kB] Get:365 http://localhost:3142/debian unstable/main amd64 libavif16 amd64 1.0.4-3 [106 kB] Get:366 http://localhost:3142/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.17.6-1+b2 [9856 B] Get:367 http://localhost:3142/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB] Get:368 http://localhost:3142/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.17.6-1+b2 [13.1 kB] Get:369 http://localhost:3142/debian unstable/main amd64 libheif1 amd64 1.17.6-1+b2 [284 kB] Get:370 http://localhost:3142/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get:371 http://localhost:3142/debian unstable/main amd64 libgd3 amd64 2.3.3-9+b3 [125 kB] Get:372 http://localhost:3142/debian unstable/main amd64 liblua5.4-0 amd64 5.4.6-3+b1 [147 kB] Get:373 http://localhost:3142/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get:374 http://localhost:3142/debian unstable/main amd64 gnuplot-nox amd64 6.0.0+dfsg1-3 [916 kB] Get:375 http://localhost:3142/debian unstable/main amd64 dh-octave-autopkgtest all 1.8.0 [10.0 kB] Get:376 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40+b5 [66.9 kB] Get:377 http://localhost:3142/debian unstable/main amd64 libarray-intspan-perl all 2.004-2 [25.7 kB] Get:378 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get:379 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:380 http://localhost:3142/debian unstable/main amd64 libconfig-model-backend-yaml-perl all 2.134-2 [10.8 kB] Get:381 http://localhost:3142/debian unstable/main amd64 libexporter-lite-perl all 0.09-2 [10.7 kB] Get:382 http://localhost:3142/debian unstable/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:383 http://localhost:3142/debian unstable/main amd64 libparse-debcontrol-perl all 2.005-6 [21.6 kB] Get:384 http://localhost:3142/debian unstable/main amd64 libsoftware-copyright-perl all 0.012-2 [18.0 kB] Get:385 http://localhost:3142/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get:386 http://localhost:3142/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get:387 http://localhost:3142/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get:388 http://localhost:3142/debian unstable/main amd64 libdata-section-perl all 0.200008-1 [13.1 kB] Get:389 http://localhost:3142/debian unstable/main amd64 libtext-template-perl all 1.61-1 [54.4 kB] Get:390 http://localhost:3142/debian unstable/main amd64 libsoftware-license-perl all 0.104006-1 [116 kB] Get:391 http://localhost:3142/debian unstable/main amd64 libsoftware-licensemoreutils-perl all 1.009-1 [22.0 kB] Get:392 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:393 http://localhost:3142/debian unstable/main amd64 libtext-reform-perl all 1.20-5 [36.0 kB] Get:394 http://localhost:3142/debian unstable/main amd64 libtext-autoformat-perl all 1.750000-2 [35.2 kB] Get:395 http://localhost:3142/debian unstable/main amd64 libtext-levenshtein-damerau-perl all 0.41-3 [12.3 kB] Get:396 http://localhost:3142/debian unstable/main amd64 libtoml-tiny-perl all 0.16-1 [23.4 kB] Get:397 http://localhost:3142/debian unstable/main amd64 libindirect-perl amd64 0.39-2+b3 [27.1 kB] Get:398 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.42-1 [59.8 kB] Get:399 http://localhost:3142/debian unstable/main amd64 libxs-parse-sublike-perl amd64 0.21-2+b2 [40.3 kB] Get:400 http://localhost:3142/debian unstable/main amd64 libobject-pad-perl amd64 0.808-1+b2 [119 kB] Get:401 http://localhost:3142/debian unstable/main amd64 libfeature-compat-class-perl all 0.06-1 [10.7 kB] Get:402 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:403 http://localhost:3142/debian unstable/main amd64 libfeature-compat-try-perl all 0.05-1 [10.4 kB] Get:404 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:405 http://localhost:3142/debian unstable/main amd64 liblog-any-perl all 1.717-1 [78.9 kB] Get:406 http://localhost:3142/debian unstable/main amd64 liblog-any-adapter-screen-perl all 0.140-2 [13.3 kB] Get:407 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:408 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1 [44.7 kB] Get:409 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:410 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:411 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:412 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:413 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:414 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:415 http://localhost:3142/debian unstable/main amd64 libpath-iterator-rule-perl all 1.015-2 [41.7 kB] Get:416 http://localhost:3142/debian unstable/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get:417 http://localhost:3142/debian unstable/main amd64 libpod-constants-perl all 0.19-2 [17.3 kB] Get:418 http://localhost:3142/debian unstable/main amd64 libset-intspan-perl all 1.19-3 [25.3 kB] Get:419 http://localhost:3142/debian unstable/main amd64 libstring-copyright-perl all 0.003014-1 [23.4 kB] Get:420 http://localhost:3142/debian unstable/main amd64 libstring-escape-perl all 2010.002-3 [18.7 kB] Get:421 http://localhost:3142/debian unstable/main amd64 libregexp-pattern-license-perl all 3.11.0-1 [94.8 kB] Get:422 http://localhost:3142/debian unstable/main amd64 libregexp-pattern-perl all 0.2.14-2 [18.7 kB] Get:423 http://localhost:3142/debian unstable/main amd64 libstring-license-perl all 0.0.9-2 [35.5 kB] Get:424 http://localhost:3142/debian unstable/main amd64 licensecheck all 3.3.9-1 [50.1 kB] Get:425 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.66-1 [34.0 kB] Get:426 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.16.0-1 [2936 kB] Get:427 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.64-2+b3 [121 kB] Get:428 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b3 [36.2 kB] Get:429 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:430 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:431 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.38-1 [129 kB] Get:432 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:433 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:434 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:435 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:436 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:437 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:438 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:439 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:440 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:441 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:442 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:443 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b3 [98.1 kB] Get:444 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:445 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:446 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.84-1 [23.9 kB] Get:447 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b3 [29.3 kB] Get:448 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:449 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:450 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:451 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:452 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:453 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:454 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:455 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:456 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:457 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:458 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:459 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:460 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:461 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:462 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:463 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:464 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:465 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:466 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:467 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:468 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:469 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:470 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:471 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:472 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:473 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:474 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:475 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:476 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:477 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:478 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-1+b3 [32.5 kB] Get:479 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:480 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:481 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:482 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:483 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.64-1 [217 kB] Get:484 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:485 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:486 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:487 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:488 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:489 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-3 [313 kB] Get:490 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15~pre1-1 [38.5 kB] Get:491 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:492 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3 [54.4 kB] Get:493 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:494 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:495 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:496 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get:497 http://localhost:3142/debian unstable/main amd64 lintian all 2.117.0 [1052 kB] Get:498 http://localhost:3142/debian unstable/main amd64 libconfig-model-dpkg-perl all 3.004 [173 kB] Get:499 http://localhost:3142/debian unstable/main amd64 libconvert-binhex-perl all 1.125-3 [27.4 kB] Get:500 http://localhost:3142/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:501 http://localhost:3142/debian unstable/main amd64 libmailtools-perl all 2.21-3 [88.6 kB] Get:502 http://localhost:3142/debian unstable/main amd64 libmime-tools-perl all 5.515-1 [203 kB] Get:503 http://localhost:3142/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.7.0+dfsg-2 [22.4 kB] Get:504 http://localhost:3142/debian unstable/main amd64 libamd3 amd64 1:7.7.0+dfsg-2 [39.0 kB] Get:505 http://localhost:3142/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:506 http://localhost:3142/debian unstable/main amd64 libgfortran5 amd64 14.1.0-1 [836 kB] Get:507 http://localhost:3142/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:508 http://localhost:3142/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-1.1+b1 [104 kB] Get:509 http://localhost:3142/debian unstable/main amd64 libccolamd3 amd64 1:7.7.0+dfsg-2 [37.9 kB] Get:510 http://localhost:3142/debian unstable/main amd64 libcamd3 amd64 1:7.7.0+dfsg-2 [36.0 kB] Get:511 http://localhost:3142/debian unstable/main amd64 libcolamd3 amd64 1:7.7.0+dfsg-2 [31.3 kB] Get:512 http://localhost:3142/debian unstable/main amd64 libcholmod5 amd64 1:7.7.0+dfsg-2 [623 kB] Get:513 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.8.0-1 [434 kB] Get:514 http://localhost:3142/debian unstable/main amd64 libcxsparse4 amd64 1:7.7.0+dfsg-2 [82.3 kB] Get:515 http://localhost:3142/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-1+b2 [779 kB] Get:516 http://localhost:3142/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-1+b2 [806 kB] Get:517 http://localhost:3142/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB] Get:518 http://localhost:3142/debian unstable/main amd64 libxcursor1 amd64 1:1.2.2-1 [37.1 kB] Get:519 http://localhost:3142/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get:520 http://localhost:3142/debian unstable/main amd64 libxinerama1 amd64 2:1.1.4-3+b1 [16.0 kB] Get:521 http://localhost:3142/debian unstable/main amd64 libfltk1.3t64 amd64 1.3.8-6.1 [553 kB] Get:522 http://localhost:3142/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB] Get:523 http://localhost:3142/debian unstable/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get:524 http://localhost:3142/debian unstable/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get:525 http://localhost:3142/debian unstable/main amd64 libglapi-mesa amd64 24.1.0-2 [36.6 kB] Get:526 http://localhost:3142/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB] Get:527 http://localhost:3142/debian unstable/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [106 kB] Get:528 http://localhost:3142/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [107 kB] Get:529 http://localhost:3142/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2 [122 kB] Get:530 http://localhost:3142/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2 [105 kB] Get:531 http://localhost:3142/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2 [116 kB] Get:532 http://localhost:3142/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2 [108 kB] Get:533 http://localhost:3142/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [109 kB] Get:534 http://localhost:3142/debian unstable/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B] Get:535 http://localhost:3142/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:536 http://localhost:3142/debian unstable/main amd64 libvulkan1 amd64 1.3.283.0-1 [125 kB] Get:537 http://localhost:3142/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get:538 http://localhost:3142/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get:539 http://localhost:3142/debian unstable/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] Get:540 http://localhost:3142/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] Get:541 http://localhost:3142/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:542 http://localhost:3142/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-12 [23.7 MB] Get:543 http://localhost:3142/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get:544 http://localhost:3142/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10 [34.7 kB] Get:545 http://localhost:3142/debian unstable/main amd64 libgl1-mesa-dri amd64 24.1.0-2 [8638 kB] Get:546 http://localhost:3142/debian unstable/main amd64 libglx-mesa0 amd64 24.1.0-2 [151 kB] Get:547 http://localhost:3142/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB] Get:548 http://localhost:3142/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b1 [89.8 kB] Get:549 http://localhost:3142/debian unstable/main amd64 libfltk-gl1.3t64 amd64 1.3.8-6.1 [62.4 kB] Get:550 http://localhost:3142/debian unstable/main amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2 [41.3 kB] Get:551 http://localhost:3142/debian unstable/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get:552 http://localhost:3142/debian unstable/main amd64 libglpk40 amd64 5.0-1+b1 [397 kB] Get:553 http://localhost:3142/debian unstable/main amd64 libopengl0 amd64 1.7.0-1+b1 [31.1 kB] Get:554 http://localhost:3142/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1+b1 [180 kB] Get:555 http://localhost:3142/debian unstable/main amd64 libhwy1t64 amd64 1.1.0-3 [539 kB] Get:556 http://localhost:3142/debian unstable/main amd64 libjxl0.8 amd64 0.8.2-4 [1222 kB] Get:557 http://localhost:3142/debian unstable/main amd64 libwmflite-0.2-7 amd64 0.2.13-1.1+b2 [75.4 kB] Get:558 http://localhost:3142/debian unstable/main amd64 libgraphicsmagick-q16-3t64 amd64 1.4+really1.3.43-1+b1 [1201 kB] Get:559 http://localhost:3142/debian unstable/main amd64 libgraphicsmagick++-q16-12t64 amd64 1.4+really1.3.43-1+b1 [119 kB] Get:560 http://localhost:3142/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get:561 http://localhost:3142/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get:562 http://localhost:3142/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get:563 http://localhost:3142/debian unstable/main amd64 libasound2-data all 1.2.11-1 [20.9 kB] Get:564 http://localhost:3142/debian unstable/main amd64 libasound2t64 amd64 1.2.11-1+b1 [369 kB] Get:565 http://localhost:3142/debian unstable/main amd64 libopus0 amd64 1.4-1+b1 [198 kB] Get:566 http://localhost:3142/debian unstable/main amd64 libsamplerate0 amd64 0.2.2-4+b1 [951 kB] Get:567 http://localhost:3142/debian unstable/main amd64 libjack-jackd2-0 amd64 1.9.21~dfsg-3+b3 [284 kB] Get:568 http://localhost:3142/debian unstable/main amd64 libportaudio2 amd64 19.6.0-1.2+b2 [64.8 kB] Get:569 http://localhost:3142/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get:570 http://localhost:3142/debian unstable/main amd64 libqrupdate1 amd64 1.1.2-4+b1 [38.4 kB] Get:571 http://localhost:3142/debian unstable/main amd64 libqscintilla2-qt6-l10n all 2.14.1+dfsg-1 [105 kB] Get:572 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5 [758 kB] Get:573 http://localhost:3142/debian unstable/main amd64 libb2-1 amd64 0.98.1-1.1+b1 [41.7 kB] Get:574 http://localhost:3142/debian unstable/main amd64 libdouble-conversion3 amd64 3.3.0-1+b1 [41.0 kB] Get:575 http://localhost:3142/debian unstable/main amd64 libpcre2-16-0 amd64 10.42-4+b1 [246 kB] Get:576 http://localhost:3142/debian unstable/main amd64 libqt6core6t64 amd64 6.4.2+dfsg-21.1+b1 [1633 kB] Get:577 http://localhost:3142/debian unstable/main amd64 libwayland-server0 amd64 1.22.0-2.1+b1 [33.0 kB] Get:578 http://localhost:3142/debian unstable/main amd64 libgbm1 amd64 24.1.0-2 [40.9 kB] Get:579 http://localhost:3142/debian unstable/main amd64 libwayland-client0 amd64 1.22.0-2.1+b1 [25.7 kB] Get:580 http://localhost:3142/debian unstable/main amd64 libegl-mesa0 amd64 24.1.0-2 [127 kB] Get:581 http://localhost:3142/debian unstable/main amd64 libegl1 amd64 1.7.0-1+b1 [34.3 kB] Get:582 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get:583 http://localhost:3142/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get:584 http://localhost:3142/debian unstable/main amd64 libevdev2 amd64 1.13.1+dfsg-1+b1 [32.6 kB] Get:585 http://localhost:3142/debian unstable/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [22.2 kB] Get:586 http://localhost:3142/debian unstable/main amd64 libgudev-1.0-0 amd64 238-5 [14.4 kB] Get:587 http://localhost:3142/debian unstable/main amd64 libwacom-common all 2.10.0-2 [62.5 kB] Get:588 http://localhost:3142/debian unstable/main amd64 libwacom9 amd64 2.10.0-2 [22.4 kB] Get:589 http://localhost:3142/debian unstable/main amd64 libinput-bin amd64 1.25.0-1+b2 [24.8 kB] Get:590 http://localhost:3142/debian unstable/main amd64 libinput10 amd64 1.25.0-1+b2 [128 kB] Get:591 http://localhost:3142/debian unstable/main amd64 libmd4c0 amd64 0.4.8-1+b1 [45.1 kB] Get:592 http://localhost:3142/debian unstable/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Get:593 http://localhost:3142/debian unstable/main amd64 libqt6dbus6t64 amd64 6.4.2+dfsg-21.1+b1 [250 kB] Get:594 http://localhost:3142/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get:595 http://localhost:3142/debian unstable/main amd64 libts0t64 amd64 1.22-1.1 [61.6 kB] Get:596 http://localhost:3142/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.1-1.1+b1 [26.8 kB] Get:597 http://localhost:3142/debian unstable/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get:598 http://localhost:3142/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b1 [22.2 kB] Get:599 http://localhost:3142/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:600 http://localhost:3142/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:601 http://localhost:3142/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2 [105 kB] Get:602 http://localhost:3142/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2 [129 kB] Get:603 http://localhost:3142/debian unstable/main amd64 xkb-data all 2.41-2 [795 kB] Get:604 http://localhost:3142/debian unstable/main amd64 libxkbcommon0 amd64 1.6.0-1+b1 [109 kB] Get:605 http://localhost:3142/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1+b1 [16.2 kB] Get:606 http://localhost:3142/debian unstable/main amd64 libqt6gui6t64 amd64 6.4.2+dfsg-21.1+b1 [2864 kB] Get:607 http://localhost:3142/debian unstable/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get:608 http://localhost:3142/debian unstable/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get:609 http://localhost:3142/debian unstable/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Get:610 http://localhost:3142/debian unstable/main amd64 libcups2t64 amd64 2.4.7-1.2+b1 [247 kB] Get:611 http://localhost:3142/debian unstable/main amd64 libqt6widgets6t64 amd64 6.4.2+dfsg-21.1+b1 [2453 kB] Get:612 http://localhost:3142/debian unstable/main amd64 libqt6printsupport6t64 amd64 6.4.2+dfsg-21.1+b1 [213 kB] Get:613 http://localhost:3142/debian unstable/main amd64 libqscintilla2-qt6-15 amd64 2.14.1+dfsg-1+b2 [1130 kB] Get:614 http://localhost:3142/debian unstable/main amd64 libqt6core5compat6 amd64 6.4.2-4+b2 [135 kB] Get:615 http://localhost:3142/debian unstable/main amd64 libqt6sql6t64 amd64 6.4.2+dfsg-21.1+b1 [136 kB] Get:616 http://localhost:3142/debian unstable/main amd64 libqt6help6 amd64 6.4.2-4 [174 kB] Get:617 http://localhost:3142/debian unstable/main amd64 libduktape207 amd64 2.7.0-2+b1 [134 kB] Get:618 http://localhost:3142/debian unstable/main amd64 libproxy1v5 amd64 0.5.6-1 [30.3 kB] Get:619 http://localhost:3142/debian unstable/main amd64 libqt6network6t64 amd64 6.4.2+dfsg-21.1+b1 [686 kB] Get:620 http://localhost:3142/debian unstable/main amd64 libqt6opengl6t64 amd64 6.4.2+dfsg-21.1+b1 [392 kB] Get:621 http://localhost:3142/debian unstable/main amd64 libqt6openglwidgets6t64 amd64 6.4.2+dfsg-21.1+b1 [44.7 kB] Get:622 http://localhost:3142/debian unstable/main amd64 libqt6xml6t64 amd64 6.4.2+dfsg-21.1+b1 [77.4 kB] Get:623 http://localhost:3142/debian unstable/main amd64 libogg0 amd64 1.3.5-3+b1 [23.7 kB] Get:624 http://localhost:3142/debian unstable/main amd64 libflac12t64 amd64 1.4.3+ds-2.1 [200 kB] Get:625 http://localhost:3142/debian unstable/main amd64 libmp3lame0 amd64 3.100-6+b2 [361 kB] Get:626 http://localhost:3142/debian unstable/main amd64 libmpg123-0t64 amd64 1.32.6-3 [148 kB] Get:627 http://localhost:3142/debian unstable/main amd64 libvorbis0a amd64 1.3.7-2 [89.7 kB] Get:628 http://localhost:3142/debian unstable/main amd64 libvorbisenc2 amd64 1.3.7-2 [75.9 kB] Get:629 http://localhost:3142/debian unstable/main amd64 libsndfile1 amd64 1.2.2-1+b2 [197 kB] Get:630 http://localhost:3142/debian unstable/main amd64 libspqr4 amd64 1:7.7.0+dfsg-2 [140 kB] Get:631 http://localhost:3142/debian unstable/main amd64 libsundials-ida6 amd64 6.4.1+dfsg1-3+b6 [145 kB] Get:632 http://localhost:3142/debian unstable/main amd64 libbtf2 amd64 1:7.7.0+dfsg-2 [23.3 kB] Get:633 http://localhost:3142/debian unstable/main amd64 libklu2 amd64 1:7.7.0+dfsg-2 [87.1 kB] Get:634 http://localhost:3142/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-1+b2 [344 kB] Get:635 http://localhost:3142/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10 [131 kB] Get:636 http://localhost:3142/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [53.9 kB] Get:637 http://localhost:3142/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get:638 http://localhost:3142/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get:639 http://localhost:3142/debian unstable/main amd64 libibverbs1 amd64 50.0-2+b1 [61.7 kB] Get:640 http://localhost:3142/debian unstable/main amd64 ibverbs-providers amd64 50.0-2+b1 [342 kB] Get:641 http://localhost:3142/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get:642 http://localhost:3142/debian unstable/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Get:643 http://localhost:3142/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:644 http://localhost:3142/debian unstable/main amd64 librdmacm1t64 amd64 50.0-2+b1 [70.2 kB] Get:645 http://localhost:3142/debian unstable/main amd64 libfabric1 amd64 1.17.0-3+b1 [628 kB] Get:646 http://localhost:3142/debian unstable/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB] Get:647 http://localhost:3142/debian unstable/main amd64 libmunge2 amd64 0.5.15-4 [19.8 kB] Get:648 http://localhost:3142/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1 [13.8 kB] Get:649 http://localhost:3142/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get:650 http://localhost:3142/debian unstable/main amd64 libhwloc-plugins amd64 2.10.0-1+b1 [18.0 kB] Get:651 http://localhost:3142/debian unstable/main amd64 libpmix2t64 amd64 5.0.2-3 [652 kB] Get:652 http://localhost:3142/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b1 [13.0 MB] Get:653 http://localhost:3142/debian unstable/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get:654 http://localhost:3142/debian unstable/main amd64 libhsa-runtime64-1 amd64 5.7.1-2 [504 kB] Get:655 http://localhost:3142/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-3 [8760 kB] Get:656 http://localhost:3142/debian unstable/main amd64 libucx0 amd64 1.16.0+ds-5 [1109 kB] Get:657 http://localhost:3142/debian unstable/main amd64 libopenmpi3t64 amd64 4.1.6-13.3 [2426 kB] Get:658 http://localhost:3142/debian unstable/main amd64 libfftw3-mpi3 amd64 3.3.10-1+b2 [64.2 kB] Get:659 http://localhost:3142/debian unstable/main amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-3.3 [1301 kB] Get:660 http://localhost:3142/debian unstable/main amd64 libcombblas2.0.0t64 amd64 2.0.0-3.1+b1 [285 kB] Get:661 http://localhost:3142/debian unstable/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b1 [175 kB] Get:662 http://localhost:3142/debian unstable/main amd64 libptscotch-7.0 amd64 7.0.4-2 [681 kB] Get:663 http://localhost:3142/debian unstable/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-1+b2 [605 kB] Get:664 http://localhost:3142/debian unstable/main amd64 libhypre-2.29.0 amd64 2.29.0-2 [1648 kB] Get:665 http://localhost:3142/debian unstable/main amd64 openmpi-common all 4.1.6-13.3 [169 kB] Get:666 http://localhost:3142/debian unstable/main amd64 openmpi-bin amd64 4.1.6-13.3 [226 kB] Get:667 http://localhost:3142/debian unstable/main amd64 mpi-default-bin amd64 1.15 [2408 B] Get:668 http://localhost:3142/debian unstable/main amd64 libscalapack-openmpi2.2 amd64 2.2.1-3.1 [1567 kB] Get:669 http://localhost:3142/debian unstable/main amd64 libmumps-5.6t64 amd64 5.6.2-2.1+b1 [1895 kB] Get:670 http://localhost:3142/debian unstable/main amd64 libsuperlu6 amd64 6.0.1+dfsg1-1+b1 [170 kB] Get:671 http://localhost:3142/debian unstable/main amd64 libscotch-7.0 amd64 7.0.4-2 [410 kB] Get:672 http://localhost:3142/debian unstable/main amd64 libtrilinos-kokkos-13.2 amd64 13.2.0-5+b3 [107 kB] Get:673 http://localhost:3142/debian unstable/main amd64 libtrilinos-teuchos-13.2 amd64 13.2.0-5+b3 [1278 kB] Get:674 http://localhost:3142/debian unstable/main amd64 libtrilinos-epetra-13.2 amd64 13.2.0-5+b3 [441 kB] Get:675 http://localhost:3142/debian unstable/main amd64 libtrilinos-triutils-13.2 amd64 13.2.0-5+b3 [125 kB] Get:676 http://localhost:3142/debian unstable/main amd64 libtrilinos-epetraext-13.2 amd64 13.2.0-5+b3 [451 kB] Get:677 http://localhost:3142/debian unstable/main amd64 libtrilinos-trilinosss-13.2 amd64 13.2.0-5+b3 [88.0 kB] Get:678 http://localhost:3142/debian unstable/main amd64 libtrilinos-amesos-13.2 amd64 13.2.0-5+b3 [120 kB] Get:679 http://localhost:3142/debian unstable/main amd64 libtrilinos-aztecoo-13.2 amd64 13.2.0-5+b3 [210 kB] Get:680 http://localhost:3142/debian unstable/main amd64 libtrilinos-galeri-13.2 amd64 13.2.0-5+b3 [94.3 kB] Get:681 http://localhost:3142/debian unstable/main amd64 libtrilinos-ifpack-13.2 amd64 13.2.0-5+b3 [493 kB] Get:682 http://localhost:3142/debian unstable/main amd64 libtrilinos-zoltan-13.2 amd64 13.2.0-5+b3 [386 kB] Get:683 http://localhost:3142/debian unstable/main amd64 libtrilinos-ml-13.2 amd64 13.2.0-5+b3 [1009 kB] Get:684 http://localhost:3142/debian unstable/main amd64 libumfpack6 amd64 1:7.7.0+dfsg-2 [267 kB] Get:685 http://localhost:3142/debian unstable/main amd64 libpetsc-real3.20 amd64 3.20.6+dfsg1-1 [6914 kB] Get:686 http://localhost:3142/debian unstable/main amd64 libsundials-nvecparallel-petsc6 amd64 6.4.1+dfsg1-3+b6 [58.7 kB] Get:687 http://localhost:3142/debian unstable/main amd64 libsundials-sunmatrix4 amd64 6.4.1+dfsg1-3+b6 [104 kB] Get:688 http://localhost:3142/debian unstable/main amd64 libsundials-sunlinsol3 amd64 6.4.1+dfsg1-3+b6 [202 kB] Get:689 http://localhost:3142/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get:690 http://localhost:3142/debian unstable/main amd64 texinfo-lib amd64 7.1-3+b1 [224 kB] Get:691 http://localhost:3142/debian unstable/main amd64 tex-common all 6.18 [32.5 kB] Get:692 http://localhost:3142/debian unstable/main amd64 texinfo all 7.1-3 [1748 kB] Get:693 http://localhost:3142/debian unstable/main amd64 octave-common all 9.1.0-3 [6565 kB] Get:694 http://localhost:3142/debian unstable/main amd64 octave amd64 9.1.0-3 [9592 kB] Get:695 http://localhost:3142/debian unstable/main amd64 libncurses6 amd64 6.5-2 [104 kB] Get:696 http://localhost:3142/debian unstable/main amd64 libncurses-dev amd64 6.5-2 [349 kB] Get:697 http://localhost:3142/debian unstable/main amd64 libreadline-dev amd64 8.2-4 [152 kB] Get:698 http://localhost:3142/debian unstable/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-3.3 [89.3 kB] Get:699 http://localhost:3142/debian unstable/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get:700 http://localhost:3142/debian unstable/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-3.3 [40.4 kB] Get:701 http://localhost:3142/debian unstable/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-3.3 [131 kB] Get:702 http://localhost:3142/debian unstable/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-3.3 [21.3 kB] Get:703 http://localhost:3142/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get:704 http://localhost:3142/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get:705 http://localhost:3142/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get:706 http://localhost:3142/debian unstable/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get:707 http://localhost:3142/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.8.0-1 [548 kB] Get:708 http://localhost:3142/debian unstable/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get:709 http://localhost:3142/debian unstable/main amd64 hdf5-helpers amd64 1.10.10+repack-3.3 [23.4 kB] Get:710 http://localhost:3142/debian unstable/main amd64 libhdf5-dev amd64 1.10.10+repack-3.3 [2639 kB] Get:711 http://localhost:3142/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:712 http://localhost:3142/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get:713 http://localhost:3142/debian unstable/main amd64 libxau-dev amd64 1:1.0.9-1+b1 [21.3 kB] Get:714 http://localhost:3142/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3+b1 [40.8 kB] Get:715 http://localhost:3142/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:716 http://localhost:3142/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2 [181 kB] Get:717 http://localhost:3142/debian unstable/main amd64 libx11-dev amd64 2:1.8.7-1+b1 [875 kB] Get:718 http://localhost:3142/debian unstable/main amd64 libglx-dev amd64 1.7.0-1+b1 [15.8 kB] Get:719 http://localhost:3142/debian unstable/main amd64 libgl-dev amd64 1.7.0-1+b1 [101 kB] Get:720 http://localhost:3142/debian unstable/main amd64 libblas-dev amd64 3.12.0-3 [159 kB] Get:721 http://localhost:3142/debian unstable/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Get:722 http://localhost:3142/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-1+b2 [608 kB] Get:723 http://localhost:3142/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-1+b2 [52.3 kB] Get:724 http://localhost:3142/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-1+b2 [2125 kB] Get:725 http://localhost:3142/debian unstable/main amd64 libgfortran-13-dev amd64 13.2.0-25 [847 kB] Get:726 http://localhost:3142/debian unstable/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-25 [10.6 MB] Get:727 http://localhost:3142/debian unstable/main amd64 gfortran-13 amd64 13.2.0-25 [12.8 kB] Get:728 http://localhost:3142/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7 [1280 B] Get:729 http://localhost:3142/debian unstable/main amd64 gfortran amd64 4:13.2.0-7 [1440 B] Get:730 http://localhost:3142/debian unstable/main amd64 octave-dev amd64 9.1.0-3 [991 kB] Get:731 http://localhost:3142/debian unstable/main amd64 dh-octave all 1.8.0 [22.7 kB] Get:732 http://localhost:3142/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:733 http://localhost:3142/debian unstable/main amd64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get:734 http://localhost:3142/debian unstable/main amd64 python3-distutils all 3.12.3-3.1 [131 kB] Get:735 http://localhost:3142/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:736 http://localhost:3142/debian unstable/main amd64 dh-python all 6.20240422 [107 kB] Get:737 http://localhost:3142/debian unstable/main amd64 libllvm16t64 amd64 1:16.0.6-27 [23.1 MB] Get:738 http://localhost:3142/debian unstable/main amd64 libclang-cpp16t64 amd64 1:16.0.6-27 [11.5 MB] Get:739 http://localhost:3142/debian unstable/main amd64 libclang1-16t64 amd64 1:16.0.6-27 [6581 kB] Get:740 http://localhost:3142/debian unstable/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get:741 http://localhost:3142/debian unstable/main amd64 libxapian30 amd64 1.4.25-1 [1139 kB] Get:742 http://localhost:3142/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get:743 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:744 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:745 http://localhost:3142/debian unstable/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get:746 http://localhost:3142/debian unstable/main amd64 libcdt5 amd64 2.42.2-9+b1 [39.8 kB] Get:747 http://localhost:3142/debian unstable/main amd64 libcgraph6 amd64 2.42.2-9+b1 [63.6 kB] Get:748 http://localhost:3142/debian unstable/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2 [157 kB] Get:749 http://localhost:3142/debian unstable/main amd64 libpathplan4 amd64 2.42.2-9+b1 [42.2 kB] Get:750 http://localhost:3142/debian unstable/main amd64 libgvc6 amd64 2.42.2-9+b1 [682 kB] Get:751 http://localhost:3142/debian unstable/main amd64 libgvpr2 amd64 2.42.2-9+b1 [189 kB] Get:752 http://localhost:3142/debian unstable/main amd64 liblab-gamut1 amd64 2.42.2-9+b1 [198 kB] Get:753 http://localhost:3142/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get:754 http://localhost:3142/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get:755 http://localhost:3142/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get:756 http://localhost:3142/debian unstable/main amd64 graphviz amd64 2.42.2-9+b1 [614 kB] Get:757 http://localhost:3142/debian unstable/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get:758 http://localhost:3142/debian unstable/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get:759 http://localhost:3142/debian unstable/main amd64 libdeflate-dev amd64 1.20-1 [54.5 kB] Get:760 http://localhost:3142/debian unstable/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get:761 http://localhost:3142/debian unstable/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get:762 http://localhost:3142/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:763 http://localhost:3142/debian unstable/main amd64 libjs-sphinxdoc all 7.2.6-8 [150 kB] Get:764 http://localhost:3142/debian unstable/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [293 kB] Get:765 http://localhost:3142/debian unstable/main amd64 libnewlib-dev all 4.4.0.20231231-3 [262 kB] Get:766 http://localhost:3142/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB] Get:767 http://localhost:3142/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b1 [9176 B] Get:768 http://localhost:3142/debian unstable/main amd64 libpcre2-32-0 amd64 10.42-4+b1 [234 kB] Get:769 http://localhost:3142/debian unstable/main amd64 libpcre2-posix3 amd64 10.42-4+b1 [55.8 kB] Get:770 http://localhost:3142/debian unstable/main amd64 libpcre2-dev amd64 10.42-4+b1 [755 kB] Get:771 http://localhost:3142/debian unstable/main amd64 libperl-dev amd64 5.38.2-5 [1087 kB] Get:772 http://localhost:3142/debian unstable/main amd64 libpng-dev amd64 1.6.43-5 [360 kB] Get:773 http://localhost:3142/debian unstable/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get:774 http://localhost:3142/debian unstable/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get:775 http://localhost:3142/debian unstable/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B] Get:776 http://localhost:3142/debian unstable/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get:777 http://localhost:3142/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:778 http://localhost:3142/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get:779 http://localhost:3142/debian unstable/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [189 kB] Get:780 http://localhost:3142/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get:781 http://localhost:3142/debian unstable/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get:782 http://localhost:3142/debian unstable/main amd64 libxml2-dev amd64 2.12.7+dfsg-2 [145 kB] Get:783 http://localhost:3142/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b2 [21.9 kB] Get:784 http://localhost:3142/debian unstable/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get:785 http://localhost:3142/debian unstable/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB] Get:786 http://localhost:3142/debian unstable/main amd64 zip amd64 3.0-13 [230 kB] Get:787 http://localhost:3142/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:788 http://localhost:3142/debian unstable/main amd64 r-base-core amd64 4.4.0-2 [28.2 MB] Get:789 http://localhost:3142/debian unstable/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get:790 http://localhost:3142/debian unstable/main amd64 r-base-dev all 4.4.0-2 [4512 B] Get:791 http://localhost:3142/debian unstable/main amd64 rdfind amd64 1.6.0-1+b1 [44.7 kB] Get:792 http://localhost:3142/debian unstable/main amd64 swig amd64 4.2.1-1 [1437 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 542 MB in 36s (15.2 MB/s) Selecting previously unselected package libkrb5support0:amd64. (Reading database ... 19697 files and directories currently installed.) Preparing to unpack .../00-libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../01-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../02-libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../03-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../04-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Selecting previously unselected package mono-runtime-common. Preparing to unpack .../06-mono-runtime-common_6.8.0.105+dfsg-3.6_amd64.deb ... Unpacking mono-runtime-common (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package tzdata. Preparing to unpack .../07-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libmono-corlib4.5-dll. Preparing to unpack .../08-libmono-corlib4.5-dll_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-corlib4.5-dll (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-core4.0-cil. Preparing to unpack .../09-libmono-system-core4.0-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system-core4.0-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-numerics4.0-cil. Preparing to unpack .../10-libmono-system-numerics4.0-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system-numerics4.0-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-xml4.0-cil. Preparing to unpack .../11-libmono-system-xml4.0-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system-xml4.0-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-security4.0-cil. Preparing to unpack .../12-libmono-system-security4.0-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system-security4.0-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-configuration4.0-cil. Preparing to unpack .../13-libmono-system-configuration4.0-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system-configuration4.0-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system4.0-cil. Preparing to unpack .../14-libmono-system4.0-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system4.0-cil (6.8.0.105+dfsg-3.6) ... 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Selecting previously unselected package mono-runtime-sgen. Preparing to unpack .../1-mono-runtime-sgen_6.8.0.105+dfsg-3.6_amd64.deb ... Unpacking mono-runtime-sgen (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package mono-runtime. Preparing to unpack .../2-mono-runtime_6.8.0.105+dfsg-3.6_amd64.deb ... Unpacking mono-runtime (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-corlib4.5-cil. Preparing to unpack .../3-libmono-corlib4.5-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-corlib4.5-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package openssl. Preparing to unpack .../4-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../5-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package ca-certificates-mono. Preparing to unpack .../6-ca-certificates-mono_6.8.0.105+dfsg-3.6_all.deb ... Unpacking ca-certificates-mono (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../7-libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../8-libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../9-python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 21231 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... 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Selecting previously unselected package libmono-i18n-west4.0-cil. Preparing to unpack .../111-libmono-i18n-west4.0-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-i18n-west4.0-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-windows-forms4.0-cil. Preparing to unpack .../112-libmono-system-windows-forms4.0-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system-windows-forms4.0-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-design4.0-cil. Preparing to unpack .../113-libmono-system-design4.0-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system-design4.0-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-ldap4.0-cil. Preparing to unpack .../114-libmono-ldap4.0-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-ldap4.0-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-ldap4.0-cil. 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Selecting previously unselected package libmono-system-reactive-interfaces2.2-cil. Preparing to unpack .../175-libmono-system-reactive-interfaces2.2-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system-reactive-interfaces2.2-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-reactive-core2.2-cil. Preparing to unpack .../176-libmono-system-reactive-core2.2-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system-reactive-core2.2-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-reactive-linq2.2-cil. Preparing to unpack .../177-libmono-system-reactive-linq2.2-cil_6.8.0.105+dfsg-3.6_all.deb ... Unpacking libmono-system-reactive-linq2.2-cil (6.8.0.105+dfsg-3.6) ... Selecting previously unselected package libmono-system-reactive-debugger2.2-cil. Preparing to unpack .../178-libmono-system-reactive-debugger2.2-cil_6.8.0.105+dfsg-3.6_all.deb ... 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Preparing to unpack .../376-libsub-name-perl_0.27-1+b2_amd64.deb ... Unpacking libsub-name-perl:amd64 (0.27-1+b2) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../377-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../378-libnumber-compare-perl_0.03-3_all.deb ... Unpacking libnumber-compare-perl (0.03-3) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../379-libtext-glob-perl_0.11-3_all.deb ... Unpacking libtext-glob-perl (0.11-3) ... Selecting previously unselected package libpath-iterator-rule-perl. Preparing to unpack .../380-libpath-iterator-rule-perl_1.015-2_all.deb ... Unpacking libpath-iterator-rule-perl (1.015-2) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../381-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libpod-constants-perl. Preparing to unpack .../382-libpod-constants-perl_0.19-2_all.deb ... Unpacking libpod-constants-perl (0.19-2) ... Selecting previously unselected package libset-intspan-perl. Preparing to unpack .../383-libset-intspan-perl_1.19-3_all.deb ... Unpacking libset-intspan-perl (1.19-3) ... Selecting previously unselected package libstring-copyright-perl. Preparing to unpack .../384-libstring-copyright-perl_0.003014-1_all.deb ... Unpacking libstring-copyright-perl (0.003014-1) ... Selecting previously unselected package libstring-escape-perl. Preparing to unpack .../385-libstring-escape-perl_2010.002-3_all.deb ... Unpacking libstring-escape-perl (2010.002-3) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../744-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../745-libxss1_1%3a1.2.3-1+b1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../746-libtk8.6_8.6.14-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.14-1) ... Selecting previously unselected package libxml2-dev:amd64. Preparing to unpack .../747-libxml2-dev_2.12.7+dfsg-2_amd64.deb ... Unpacking libxml2-dev:amd64 (2.12.7+dfsg-2) ... 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Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up liberror-perl (0.17029-2) ... Setting up libtrilinos-trilinosss-13.2:amd64 (13.2.0-5+b3) ... Setting up libasound2-data (1.2.11-1) ... Setting up libbtf2:amd64 (1:7.7.0+dfsg-2) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libboolean-perl (0.46-3) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up xtrans-dev (1.4.0-1) ... Setting up zip (3.0-13) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libpcre2-32-0:amd64 (10.42-4+b1) ... Setting up libglib2.0-0t64:amd64 (2.80.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.42-1) ... Setting up libpkgconf3:amd64 (1.8.1-1+b2) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libasound2t64:amd64 (1.2.11-1+b1) ... Setting up libmunge2:amd64 (0.5.15-4) ... Setting up liblog-log4perl-perl (1.57-1) ... Setting up libtext-reform-perl (1.20-5) ... Setting up libexpat1-dev:amd64 (2.6.2-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3) ... Setting up libnspr4:amd64 (2:4.35-1.1+b1) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libio-tiecombine-perl (1.005-3) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libmonoboehm-2.0-1 (6.8.0.105+dfsg-3.6) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up libpathplan4:amd64 (2.42.2-9+b1) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libavahi-common-data:amd64 (0.8-13+b2) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up libncurses6:amd64 (6.5-2) ... Setting up libdbus-1-3:amd64 (1.14.10-4+b1) ... Setting up libfftw3-quad3:amd64 (3.3.10-1+b2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libopus0:amd64 (1.4-1+b1) ... Setting up t1utils (1.41-4) ... Setting up libnewlib-dev (4.4.0.20231231-3) ... Setting up diffstat (1.66-1) ... Setting up libexif12:amd64 (0.6.24-1+b1) ... Setting up libproc2-0:amd64 (2:4.0.4-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:amd64 (3.2.1-3) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libhwloc15:amd64 (2.10.0-1+b1) ... Setting up libvorbis0a:amd64 (1.3.7-2) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtext-template-perl (1.61-1) ... Setting up libpod-parser-perl (1.67-1) ... Setting up libtcl8.6:amd64 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b1) ... Setting up libjsoncpp25:amd64 (1.9.5-6+b2) ... Setting up icu-devtools (72.1-4+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up liblist-moreutils-xs-perl (0.430-4+b1) ... Setting up libpcsclite1:amd64 (2.2.3-1) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up libsensors5:amd64 (1:3.6.0-10) ... Setting up libqscintilla2-qt6-l10n (2.14.1+dfsg-1) ... Setting up libltdl7:amd64 (2.4.7-7+b1) ... Setting up libfftw3-double3:amd64 (3.3.10-1+b2) ... Setting up libglapi-mesa:amd64 (24.1.0-2) ... Setting up libparams-util-perl (1.102-3) ... Setting up libgfortran5:amd64 (14.1.0-1) ... Setting up libvulkan1:amd64 (1.3.283.0-1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up autoconf (2.71-3) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:amd64 (1.4.0-0.1) ... Setting up libarray-intspan-perl (2.004-2) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libfmt9:amd64 (9.1.0+ds1-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libexporter-lite-perl (0.09-2) ... Setting up liblzma-dev:amd64 (5.6.1+really5.4.5-1) ... Setting up libsub-name-perl:amd64 (0.27-1+b2) ... Setting up libgif7:amd64 (5.2.2-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libsyntax-keyword-try-perl (0.29-2) ... Setting up libnuma1:amd64 (2.0.18-1) ... Setting up libpcre2-posix3:amd64 (10.42-4+b1) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.636-1+b2) ... Setting up libparse-recdescent-perl (1.967015+dfsg-4) ... Setting up libdav1d7:amd64 (1.4.2-1) ... Setting up libmtdev1t64:amd64 (1.1.6-1.2) ... Setting up sensible-utils (0.0.22) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Setting up libduktape207:amd64 (2.7.0-2+b1) ... Setting up libxshmfence1:amd64 (1.3-1+b1) ... Setting up librhash0:amd64 (1.4.3-3+b1) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up lzop (1.04-2) ... Setting up procps (2:4.0.4-4) ... Setting up libjson-perl (4.10000-1) ... Setting up liblog-any-adapter-screen-perl (0.140-2) ... Setting up libnl-3-200:amd64 (3.7.0-0.3) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.6-13.3) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libmd4c0:amd64 (0.4.8-1+b1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libmousex-strictconstructor-perl (0.02-3) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libsuitesparseconfig7:amd64 (1:7.7.0+dfsg-2) ... Setting up liblua5.4-0:amd64 (5.4.6-3+b1) ... Setting up libaliased-perl (0.34-3) ... Setting up libthai-data (0.1.29-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libabsl20230802:amd64 (20230802.1-4) ... Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up cmake-data (3.29.3-1) ... Setting up libcdt5:amd64 (2.42.2-9+b1) ... Setting up libtext-autoformat-perl (1.750000-2) ... Setting up libcgraph6:amd64 (2.42.2-9+b1) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libglu1-mesa:amd64 (9.0.2-1.1+b1) ... Setting up libflac12t64:amd64 (1.4.3+ds-2.1) ... Setting up libtoml-tiny-perl (0.16-1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.0-5) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libexporter-tiny-perl (1.006002-1) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfido2-1:amd64 (1.14.0-1+b2) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libde265-0:amd64 (1.0.15-1+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libgfortran-13-dev:amd64 (13.2.0-25) ... Setting up libsamplerate0:amd64 (0.2.2-4+b1) ... Setting up openssl (3.2.1-3) ... Setting up libwebpmux3:amd64 (1.4.0-0.1) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libdeflate-dev:amd64 (1.20-1) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up libdrm-common (2.4.120-2) ... Setting up libyuv0:amd64 (0.0.1888.20240509-4) ... Setting up libevdev2:amd64 (1.13.1+dfsg-1+b1) ... Setting up libicu-dev:amd64 (72.1-4+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-2) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libtext-levenshtein-damerau-perl (0.41-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:amd64 (2.2.7-2+b1) ... Setting up liburi-perl (5.28-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libgudev-1.0-0:amd64 (238-5) ... Setting up libmp3lame0:amd64 (3.100-6+b2) ... Setting up libblas-dev:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.3-1) ... Setting up libvorbisenc2:amd64 (1.3.7-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libwacom-common (2.10.0-2) ... Setting up libmousex-nativetraits-perl (1.09-3) ... Setting up libbz2-dev:amd64 (1.0.8-5.1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libxkbcommon0:amd64 (1.6.0-1+b1) ... Setting up libwayland-client0:amd64 (1.22.0-2.1+b1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gnuplot-data (6.0.0+dfsg1-3) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.5-2) ... Setting up libxcb1:amd64 (1.17.0-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up gettext (0.21-14+b1) ... Setting up libfeature-compat-try-perl (0.05-1) ... Setting up libarpack2t64:amd64 (3.9.1-1.1+b1) ... Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... Setting up libamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxau-dev:amd64 (1:1.0.9-1+b1) ... Setting up libpcre2-dev:amd64 (10.42-4+b1) ... Setting up libmonosgen-2.0-dev (6.8.0.105+dfsg-3.6) ... Setting up libcurl4t64:amd64 (8.8.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up libtool (2.4.7-7) ... Setting up libcolamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libxcb-render0:amd64 (1.17.0-2) ... Setting up libfftw3-bin (3.3.10-1+b2) ... Setting up libwacom9:amd64 (2.10.0-2) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libxcb-glx0:amd64 (1.17.0-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up libpod-constants-perl (0.19-2) ... Setting up libedit2:amd64 (3.1-20240517-1) ... Setting up libpython3.11t64:amd64 (3.11.9-1) ... Setting up libpng-dev:amd64 (1.6.43-5) ... Setting up libhash-merge-perl (0.302-1) ... Setting up libsubunit-dev:amd64 (1.4.2-3) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libsoftware-copyright-perl (0.012-2) ... Setting up libaec-dev:amd64 (1.1.3-1) ... Setting up libxcb-shape0:amd64 (1.17.0-2) ... Setting up libavahi-common3:amd64 (0.8-13+b2) ... Setting up libcxsparse4:amd64 (1:7.7.0+dfsg-2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3) ... Setting up libcurl3t64-gnutls:amd64 (8.8.0-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libpath-iterator-rule-perl (1.015-2) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libnss3:amd64 (2:3.100-1) ... Setting up libxcb-shm0:amd64 (1.17.0-2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1+b1) ... Setting up libsundials-sunmatrix4:amd64 (6.4.1+dfsg1-3+b6) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libsuperlu6:amd64 (6.0.1+dfsg1-1+b1) ... Setting up libreadline-dev:amd64 (8.2-4) ... Setting up libqrupdate1:amd64 (1.1.2-4+b1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1) ... Setting up gfortran-13-x86-64-linux-gnu (13.2.0-25) ... Setting up libsundials-ida6:amd64 (6.4.1+dfsg1-3+b6) ... Setting up libcamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libmono-corlib4.5-dll (6.8.0.105+dfsg-3.6) ... Setting up libxcb-util1:amd64 (0.4.0-1+b1) ... Setting up pkgconf:amd64 (1.8.1-1+b2) ... Setting up libinput-bin (1.25.0-1+b2) ... Setting up libxcb-xkb1:amd64 (1.17.0-2) ... Setting up libxcb-image0:amd64 (0.4.0-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3) ... Setting up libllvm16t64:amd64 (1:16.0.6-27) ... Setting up libobject-pad-perl (0.808-1+b2) ... Setting up libxcb-present0:amd64 (1.17.0-2) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libxdmcp-dev:amd64 (1:1.1.2-3+b1) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg-2) ... Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libllvm17t64:amd64 (1:17.0.6-12) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libglpk40:amd64 (5.0-1+b1) ... Setting up libcurl4-openssl-dev:amd64 (8.8.0-1) ... Setting up libstring-copyright-perl (0.003014-1) ... Setting up libxcb-sync1:amd64 (1.17.0-2) ... Setting up gfortran-13 (13.2.0-25) ... Setting up libpython3.11-dev:amd64 (3.11.9-1) ... Setting up shared-mime-info (2.4-5) ... Setting up libxkbcommon-x11-0:amd64 (1.6.0-1+b1) ... Setting up liblapack-dev:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up check:amd64 (0.15.2-2+b1) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:amd64 (1.8.1-1+b2) ... Setting up libgav1-1:amd64 (0.19.0-2+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (7.2.6-8) ... Setting up libccolamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libxcb-dri2-0:amd64 (1.17.0-2) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libjack-jackd2-0:amd64 (1.9.21~dfsg-3+b3) ... Setting up libgvpr2:amd64 (2.42.2-9+b1) ... Setting up libdrm2:amd64 (2.4.120-2) ... Setting up groff-base (1.23.0-4) ... Setting up libxcb-randr0:amd64 (1.17.0-2) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up openjdk-17-doc (17.0.11+9-1) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libsndfile1:amd64 (1.2.2-1+b2) ... Setting up libmro-compat-perl (0.15-2) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libsm6:amd64 (2:1.2.3-1+b1) ... Setting up libarchive13t64:amd64 (3.7.2-2) ... Setting up libfftw3-dev:amd64 (3.3.10-1+b2) ... Setting up libavahi-client3:amd64 (0.8-13+b2) ... Setting up libmono-2.0-dev (6.8.0.105+dfsg-3.6) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b2) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.120-2) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... Setting up libinput10:amd64 (1.25.0-1+b2) ... Setting up libpaper1:amd64 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Setting up libportaudio2:amd64 (19.6.0-1.2+b2) ... Setting up libx11-xcb1:amd64 (2:1.8.7-1+b1) ... Setting up python3.11 (3.11.9-1) ... Setting up libqt6core6t64:amd64 (6.4.2+dfsg-21.1+b1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libibverbs1:amd64 (50.0-2+b1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libavif16:amd64 (1.0.4-3) ... Setting up libcarp-assert-more-perl (2.4.0-1) ... Setting up libcholmod5:amd64 (1:7.7.0+dfsg-2) ... Setting up libproxy1v5:amd64 (0.5.6-1) ... Setting up libpython3-dev:amd64 (3.11.8-1) ... Setting up libxcb1-dev:amd64 (1.17.0-2) ... Setting up libxpm4:amd64 (1:3.5.17-1+b1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libgbm1:amd64 (24.1.0-2) ... Setting up ibverbs-providers:amd64 (50.0-2+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libspqr4:amd64 (1:7.7.0+dfsg-2) ... Setting up libdrm-radeon1:amd64 (2.4.120-2) ... Setting up python3.11-dev (3.11.9-1) ... Setting up openssh-client (1:9.7p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libmono-system-numerics4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libpango-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libdrm-intel1:amd64 (2.4.120-2) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libgl1-mesa-dri:amd64 (24.1.0-2) ... Setting up libx11-dev:amd64 (2:1.8.7-1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libhdf5-fortran-102t64:amd64 (1.10.10+repack-3.3) ... Setting up libqt6sql6t64:amd64 (6.4.2+dfsg-21.1+b1) ... Setting up python3 (3.11.8-1) ... Setting up libqt6dbus6t64:amd64 (6.4.2+dfsg-21.1+b1) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up libclang1-16t64 (1:16.0.6-27) ... Setting up default-jdk-doc (2:1.17-75) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libclang-cpp16t64 (1:16.0.6-27) ... Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libqt6xml6t64:amd64 (6.4.2+dfsg-21.1+b1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxnvctrl0:amd64 (535.171.04-1) ... Setting up libfeature-compat-class-perl (0.06-1) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libegl-mesa0:amd64 (24.1.0-2) ... Setting up doxygen (1.9.8+ds-2+b1) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libmailtools-perl (2.21-3) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b1) ... Setting up libklu2:amd64 (1:7.7.0+dfsg-2) ... Setting up libconfig-model-perl (2.153-3) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up openjdk-17-jre-headless:amd64 (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libumfpack6:amd64 (1:7.7.0+dfsg-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up xauth (1:1.1.2-1) ... Setting up libdata-section-perl (0.200008-1) ... Setting up libegl1:amd64 (1.7.0-1+b1) ... Setting up cmake (3.29.3-1+b1) ... Setting up librdmacm1t64:amd64 (50.0-2+b1) ... Setting up libqt6network6t64:amd64 (6.4.2+dfsg-21.1+b1) ... Setting up libqt6core5compat6:amd64 (6.4.2-4+b2) ... Setting up libxss1:amd64 (1:1.2.3-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-3.3) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up libcups2t64:amd64 (2.4.7-1.2+b1) ... Setting up libhsakmt1:amd64 (5.7.0-1) ... Setting up libstring-rewriteprefix-perl (0.009-1) ... Setting up libpangocairo-1.0-0:amd64 (1.52.2+ds-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... Setting up libfabric1:amd64 (1.17.0-3+b1) ... Setting up libconfig-model-backend-yaml-perl (2.134-2) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b2) ... Setting up libglx-mesa0:amd64 (24.1.0-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up libglx0:amd64 (1.7.0-1+b1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Setting up libxcursor1:amd64 (1:1.2.2-1) ... Setting up libgdiplus (6.1+dfsg-1.1) ... Setting up libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-3.3) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up debhelper (13.15.3) ... Setting up dh-exec (0.30) ... Setting up libxaw7:amd64 (2:1.0.14-1+b2) ... Setting up libhwloc-plugins:amd64 (2.10.0-1+b1) ... Setting up libmime-tools-perl (5.515-1) ... Setting up libsoftware-license-perl (0.104006-1) ... Setting up libclass-load-perl (0.25-2) ... Setting up libgl1:amd64 (1.7.0-1+b1) ... Setting up python3-dev (3.11.8-1) ... Setting up r-base-core (4.4.0-2) ... Creating config file /etc/R/Renviron with new version Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libpmix2t64:amd64 (5.0.2-3) ... Setting up texinfo (7.1-3) ... Setting up libqt6gui6t64:amd64 (6.4.2+dfsg-21.1+b1) ... Setting up libhsa-runtime64-1 (5.7.1-2) ... Setting up libglx-dev:amd64 (1.7.0-1+b1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libparams-validate-perl:amd64 (1.31-2+b2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libfltk1.3t64:amd64 (1.3.8-6.1) ... Setting up libgl-dev:amd64 (1.7.0-1+b1) ... Setting up dh-python (6.20240422) ... Setting up libqt6widgets6t64:amd64 (6.4.2+dfsg-21.1+b1) ... Setting up r-base-dev (4.4.0-2) ... Setting up libsoftware-licensemoreutils-perl (1.009-1) ... Setting up libqt6help6:amd64 (6.4.2-4) ... Setting up libqt6opengl6t64:amd64 (6.4.2+dfsg-21.1+b1) ... Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... Setting up libfltk-gl1.3t64:amd64 (1.3.8-6.1) ... Setting up libamdhip64-5 (5.7.1-3) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libqt6printsupport6t64:amd64 (6.4.2+dfsg-21.1+b1) ... Setting up libstring-license-perl (0.0.9-2) ... Setting up libgetopt-long-descriptive-perl (0.111-1) ... Setting up licensecheck (3.3.9-1) ... Setting up libucx0:amd64 (1.16.0+ds-5) ... Setting up libapp-cmd-perl (0.336-1) ... Setting up libqscintilla2-qt6-15:amd64 (2.14.1+dfsg-1+b2) ... Setting up libqt6openglwidgets6t64:amd64 (6.4.2+dfsg-21.1+b1) ... Setting up libopenmpi3t64:amd64 (4.1.6-13.3) ... Setting up cme (1.040-1) ... 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Setting up libtrilinos-epetraext-13.2:amd64 (13.2.0-5+b3) ... Setting up libtrilinos-galeri-13.2:amd64 (13.2.0-5+b3) ... Setting up libtrilinos-amesos-13.2:amd64 (13.2.0-5+b3) ... Setting up libhypre-2.29.0:amd64 (2.29.0-2) ... Setting up libtrilinos-ifpack-13.2:amd64 (13.2.0-5+b3) ... Setting up libtrilinos-ml-13.2:amd64 (13.2.0-5+b3) ... Setting up libpetsc-real3.20:amd64 (3.20.6+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.20 (libpetsc.so.3.20) in auto mode Setting up libsundials-nvecparallel-petsc6:amd64 (6.4.1+dfsg1-3+b6) ... Setting up libsundials-sunlinsol3:amd64 (6.4.1+dfsg1-3+b6) ... Setting up libheif-plugin-dav1d:amd64 (1.17.6-1+b2) ... Setting up libmono-system-xml4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-1+b2) ... Setting up libwww-perl (6.77-1) ... 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Setting up dh-octave-autopkgtest (1.8.0) ... Setting up octave (9.1.0-3) ... Setting up octave-dev (9.1.0-3) ... Setting up libxml-perl (0.08-4) ... Setting up libmono-security4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up dh-octave (1.8.0) ... Setting up libxml-dom-perl (1.46-2) ... Setting up mono-4.0-gac (6.8.0.105+dfsg-3.6) ... Setting up mono-gac (6.8.0.105+dfsg-3.6) ... update-alternatives: using /usr/bin/gacutil to provide /usr/bin/cli-gacutil (global-assembly-cache-tool) in auto mode Setting up mono-runtime-sgen (6.8.0.105+dfsg-3.6) ... Setting up mono-runtime (6.8.0.105+dfsg-3.6) ... update-alternatives: using /usr/bin/mono to provide /usr/bin/cli (cli) in auto mode Setting up libmono-corlib4.5-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-compilerservices-symbolwriter4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-dynamic4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-xbuild-tasks4.0-cil (6.8.0.105+dfsg-3.6) ... 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Setting up mono-utils (6.8.0.105+dfsg-3.6) ... update-alternatives: using /usr/bin/monodis to provide /usr/bin/cli-ildasm (cil-disassembler) in auto mode Setting up libmono-system-windows4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-i18n-cjk4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-ldap4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-interfaces2.2-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-smdiagnostics0.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-servicemodel-activation4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-debugger-soft4.0a-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-net-http4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-deployment4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-io-compression4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-runtime-serialization4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-xaml4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-relaxng4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-messaging4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-tasklets4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-threading-tasks-dataflow4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-management4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-webbrowser4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-runtime-serialization-formatters-soap4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-i18n-mideast4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-codecontracts4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-i18n-west4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-parallel4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-mobile4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-json4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-management4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-i18n-rare4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-i18n-other4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-core2.2-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-csharp4.0c-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-razor2.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-drawing4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-custommarshalers4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-sharpzip4.84-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-identitymodel4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-data-services-client4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-microsoft-csharp4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-microsoft-build4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-transactions4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-componentmodel-dataannotations4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-cscompmgd0.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-messaging-rabbitmq4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-json-microsoft4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-ldap4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-io-compression-filesystem4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-i18n4.0-all (6.8.0.105+dfsg-3.6) ... Setting up libmono-microsoft-build-tasks-v4.0-4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-linq2.2-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-debugger2.2-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-windowsbase4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-net-http-webrequest4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-windows-threading2.2-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-runtime-durableinstancing4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-runtime-remoting2.2-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-enterpriseservices4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-platformservices2.2-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-identitymodel-selectors4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up mono-mcs (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-experimental2.2-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-providers2.2-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-observable-aliases0.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-data4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-data-datasetextensions4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-runtime-caching4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-oracle4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-webmatrix-data4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-sqlite4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up mono-xbuild (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-net-http-formatting4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-data-entity4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-windows-forms4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-design4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-db2-1.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-data-linq4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-serviceprocess4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-windows-forms-datavisualization4.0a-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-messaging4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-drawing-design4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-reactive-windows-forms2.2-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-http4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-abstractions4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-extensions-design4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-microsoft-web-infrastructure1.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-services4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-runtime4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-webpages-deployment2.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-http-webhost4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-http4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-routing4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-servicemodel4.0a-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-webpages2.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-xml-serialization4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-servicemodel-routing4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-servicemodel-discovery4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-http-selfhost4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-extensions4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-webpages-razor2.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-servicemodel-web4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-dynamicdata4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-web-mvc3.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-system-data-services4.0-cil (6.8.0.105+dfsg-3.6) ... Setting up libmono-cil-dev (6.8.0.105+dfsg-3.6) ... Processing triggers for libc-bin (2.38-12) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TunTrust_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem Adding debian:XRamp_Global_CA_Root.pem done. Setting up openjdk-17-jdk-headless:amd64 (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.17-75) ... Setting up default-jdk-headless (2:1.17-75) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... Updating Mono key store Mono Certificate Store Sync - version 6.8.0.105 Populate Mono certificate store from a concatenated list of certificates. Copyright 2002, 2003 Motus Technologies. Copyright 2004-2008 Novell. BSD licensed. Importing into legacy system store: I already trust 0, your new list has 146 Certificate added: CN=ACCVRAIZ1, OU=PKIACCV, O=ACCV, C=ES Certificate added: C=ES, O=FNMT-RCM, OU=AC RAIZ FNMT-RCM Certificate added: C=ES, O=FNMT-RCM, OU=Ceres, OID.2.5.4.97=VATES-Q2826004J, CN=AC RAIZ FNMT-RCM SERVIDORES SEGUROS Certificate added: SERIALNUMBER=G63287510, C=ES, O=ANF Autoridad de Certificacion, OU=ANF CA Raiz, CN=ANF Secure Server Root CA Certificate added: C=IT, L=Milan, O=Actalis S.p.A./03358520967, CN=Actalis Authentication Root CA Certificate added: C=US, O=AffirmTrust, CN=AffirmTrust Commercial Certificate added: C=US, O=AffirmTrust, CN=AffirmTrust Networking Certificate added: C=US, O=AffirmTrust, CN=AffirmTrust Premium Certificate added: C=US, O=AffirmTrust, CN=AffirmTrust Premium ECC Certificate added: C=US, O=Amazon, CN=Amazon Root CA 1 Certificate added: C=US, O=Amazon, CN=Amazon Root CA 2 Certificate added: C=US, O=Amazon, CN=Amazon Root CA 3 Certificate added: C=US, O=Amazon, CN=Amazon Root CA 4 Certificate added: CN=Atos TrustedRoot 2011, O=Atos, C=DE Certificate added: CN=Atos TrustedRoot Root CA ECC TLS 2021, O=Atos, C=DE Certificate added: CN=Atos TrustedRoot Root CA RSA TLS 2021, O=Atos, C=DE Certificate added: C=ES, CN=Autoridad de Certificacion Firmaprofesional CIF A62634068 Certificate added: C=CN, O=BEIJING CERTIFICATE AUTHORITY, CN=BJCA Global Root CA1 Certificate added: C=CN, O=BEIJING CERTIFICATE AUTHORITY, CN=BJCA Global Root CA2 Certificate added: C=IE, O=Baltimore, OU=CyberTrust, CN=Baltimore CyberTrust Root Certificate added: C=NO, O=Buypass AS-983163327, CN=Buypass Class 2 Root CA Certificate added: C=NO, O=Buypass AS-983163327, CN=Buypass Class 3 Root CA Certificate added: C=SK, L=Bratislava, O=Disig a.s., CN=CA Disig Root R2 Certificate added: C=CN, O=China Financial Certification Authority, CN=CFCA EV ROOT Certificate added: C=GB, S=Greater Manchester, L=Salford, O=COMODO CA Limited, CN=COMODO Certification Authority Certificate added: C=GB, S=Greater Manchester, L=Salford, O=COMODO CA Limited, CN=COMODO ECC Certification Authority Certificate added: C=GB, S=Greater Manchester, L=Salford, O=COMODO CA Limited, CN=COMODO RSA Certification Authority Certificate added: C=US, O=Certainly, CN=Certainly Root E1 Certificate added: C=US, O=Certainly, CN=Certainly Root R1 Certificate added: C=FR, O=Dhimyotis, CN=Certigna Certificate added: C=FR, O=Dhimyotis, OU=0002 48146308100036, CN=Certigna Root CA Certificate added: C=PL, O=Asseco Data Systems S.A., OU=Certum Certification Authority, CN=Certum EC-384 CA Certificate added: C=PL, O=Unizeto Technologies S.A., OU=Certum Certification Authority, CN=Certum Trusted Network CA Certificate added: C=PL, O=Unizeto Technologies S.A., OU=Certum Certification Authority, CN=Certum Trusted Network CA 2 Certificate added: C=PL, O=Asseco Data Systems S.A., OU=Certum Certification Authority, CN=Certum Trusted Root CA Certificate added: C=US, O=CommScope, CN=CommScope Public Trust ECC Root-01 Certificate added: C=US, O=CommScope, CN=CommScope Public Trust ECC Root-02 Certificate added: C=US, O=CommScope, CN=CommScope Public Trust RSA Root-01 Certificate added: C=US, O=CommScope, CN=CommScope Public Trust RSA Root-02 Certificate added: C=GB, S=Greater Manchester, L=Salford, O=Comodo CA Limited, CN=AAA Certificate Services Certificate added: C=DE, O=D-Trust GmbH, CN=D-TRUST BR Root CA 1 2020 Certificate added: C=DE, O=D-Trust GmbH, CN=D-TRUST EV Root CA 1 2020 Certificate added: C=DE, O=D-Trust GmbH, CN=D-TRUST Root Class 3 CA 2 2009 Certificate added: C=DE, O=D-Trust GmbH, CN=D-TRUST Root Class 3 CA 2 EV 2009 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Assured ID Root CA Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Assured ID Root G2 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Assured ID Root G3 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Global Root CA Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Global Root G2 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Global Root G3 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert High Assurance EV Root CA Certificate added: C=US, O="DigiCert, Inc.", CN=DigiCert TLS ECC P384 Root G5 Certificate added: C=US, O="DigiCert, Inc.", CN=DigiCert TLS RSA4096 Root G5 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Trusted Root G4 Certificate added: O=Entrust.net, OU=www.entrust.net/CPS_2048 incorp. by ref. (limits liab.), OU=(c) 1999 Entrust.net Limited, CN=Entrust.net Certification Authority (2048) Certificate added: C=US, O="Entrust, Inc.", OU=www.entrust.net/CPS is incorporated by reference, OU="(c) 2006 Entrust, Inc.", CN=Entrust Root Certification Authority Certificate added: C=US, O="Entrust, Inc.", OU=See www.entrust.net/legal-terms, OU="(c) 2012 Entrust, Inc. - for authorized use only", CN=Entrust Root Certification Authority - EC1 Certificate added: C=US, O="Entrust, Inc.", OU=See www.entrust.net/legal-terms, OU="(c) 2009 Entrust, Inc. - for authorized use only", CN=Entrust Root Certification Authority - G2 Certificate added: C=US, O="Entrust, Inc.", OU=See www.entrust.net/legal-terms, OU="(c) 2015 Entrust, Inc. - for authorized use only", CN=Entrust Root Certification Authority - G4 Certificate added: C=CN, O="GUANG DONG CERTIFICATE AUTHORITY CO.,LTD.", CN=GDCA TrustAUTH R5 ROOT Certificate added: C=AT, O=e-commerce monitoring GmbH, CN=GLOBALTRUST 2020 Certificate added: C=US, O=Google Trust Services LLC, CN=GTS Root R1 Certificate added: C=US, O=Google Trust Services LLC, CN=GTS Root R2 Certificate added: C=US, O=Google Trust Services LLC, CN=GTS Root R3 Certificate added: C=US, O=Google Trust Services LLC, CN=GTS Root R4 Certificate added: OU=GlobalSign ECC Root CA - R4, O=GlobalSign, CN=GlobalSign Certificate added: OU=GlobalSign ECC Root CA - R5, O=GlobalSign, CN=GlobalSign Certificate added: C=BE, O=GlobalSign nv-sa, OU=Root CA, CN=GlobalSign Root CA Certificate added: OU=GlobalSign Root CA - R3, O=GlobalSign, CN=GlobalSign Certificate added: OU=GlobalSign Root CA - R6, O=GlobalSign, CN=GlobalSign Certificate added: C=BE, O=GlobalSign nv-sa, CN=GlobalSign Root E46 Certificate added: C=BE, O=GlobalSign nv-sa, CN=GlobalSign Root R46 Certificate added: C=US, O="The Go Daddy Group, Inc.", OU=Go Daddy Class 2 Certification Authority Certificate added: C=US, S=Arizona, L=Scottsdale, O="GoDaddy.com, Inc.", CN=Go Daddy Root Certificate Authority - G2 Certificate added: C=GR, O=Hellenic Academic and Research Institutions CA, CN=HARICA TLS ECC Root CA 2021 Certificate added: C=GR, O=Hellenic Academic and Research Institutions CA, CN=HARICA TLS RSA Root CA 2021 Certificate added: C=GR, L=Athens, O=Hellenic Academic and Research Institutions Cert. Authority, CN=Hellenic Academic and Research Institutions ECC RootCA 2015 Certificate added: C=GR, L=Athens, O=Hellenic Academic and Research Institutions Cert. Authority, CN=Hellenic Academic and Research Institutions RootCA 2015 Certificate added: C=TW, O="Chunghwa Telecom Co., Ltd.", CN=HiPKI Root CA - G1 Certificate added: C=HK, S=Hong Kong, L=Hong Kong, O=Hongkong Post, CN=Hongkong Post Root CA 3 Certificate added: C=US, O=Internet Security Research Group, CN=ISRG Root X1 Certificate added: C=US, O=Internet Security Research Group, CN=ISRG Root X2 Certificate added: C=US, O=IdenTrust, CN=IdenTrust Commercial Root CA 1 Certificate added: C=US, O=IdenTrust, CN=IdenTrust Public Sector Root CA 1 Certificate added: C=ES, O=IZENPE S.A., CN=Izenpe.com Certificate added: C=HU, L=Budapest, O=Microsec Ltd., CN=Microsec e-Szigno Root CA 2009, E=info@e-szigno.hu Certificate added: C=US, O=Microsoft Corporation, CN=Microsoft ECC Root Certificate Authority 2017 Certificate added: C=US, O=Microsoft Corporation, CN=Microsoft RSA Root Certificate Authority 2017 Certificate added: C=KR, O=NAVER BUSINESS PLATFORM Corp., CN=NAVER Global Root Certification Authority Certificate added: C=HU, L=Budapest, O=NetLock Kft., OU=Tanúsítványkiadók (Certification Services), CN=NetLock Arany (Class Gold) Főtanúsítvány Certificate added: C=CH, O=WISeKey, OU=OISTE Foundation Endorsed, CN=OISTE WISeKey Global Root GB CA Certificate added: C=CH, O=WISeKey, OU=OISTE Foundation Endorsed, CN=OISTE WISeKey Global Root GC CA Certificate added: C=BM, O=QuoVadis Limited, CN=QuoVadis Root CA 1 G3 Certificate added: C=BM, O=QuoVadis Limited, CN=QuoVadis Root CA 2 Certificate added: C=BM, O=QuoVadis Limited, CN=QuoVadis Root CA 2 G3 Certificate added: C=BM, O=QuoVadis Limited, CN=QuoVadis Root CA 3 Certificate added: C=BM, O=QuoVadis Limited, CN=QuoVadis Root CA 3 G3 Certificate added: C=US, S=Texas, L=Houston, O=SSL Corporation, CN=SSL.com EV Root Certification Authority ECC Certificate added: C=US, S=Texas, L=Houston, O=SSL Corporation, CN=SSL.com EV Root Certification Authority RSA R2 Certificate added: C=US, S=Texas, L=Houston, O=SSL Corporation, CN=SSL.com Root Certification Authority ECC Certificate added: C=US, S=Texas, L=Houston, O=SSL Corporation, CN=SSL.com Root Certification Authority RSA Certificate added: C=US, O=SSL Corporation, CN=SSL.com TLS ECC Root CA 2022 Certificate added: C=US, O=SSL Corporation, CN=SSL.com TLS RSA Root CA 2022 Certificate added: C=PL, O=Krajowa Izba Rozliczeniowa S.A., CN=SZAFIR ROOT CA2 Certificate added: C=GB, O=Sectigo Limited, CN=Sectigo Public Server Authentication Root E46 Certificate added: C=GB, O=Sectigo Limited, CN=Sectigo Public Server Authentication Root R46 Certificate added: C=JP, O="Japan Certification Services, Inc.", CN=SecureSign RootCA11 Certificate added: C=US, O=SecureTrust Corporation, CN=SecureTrust CA Certificate added: C=US, O=SecureTrust Corporation, CN=Secure Global CA Certificate added: C=JP, O="SECOM Trust Systems CO.,LTD.", CN=Security Communication ECC RootCA1 Certificate added: C=JP, O="SECOM Trust Systems CO.,LTD.", OU=Security Communication RootCA2 Certificate added: C=JP, O="SECOM Trust Systems CO.,LTD.", CN=Security Communication RootCA3 Certificate added: C=JP, O=SECOM Trust.net, OU=Security Communication RootCA1 Certificate added: C=US, O="Starfield Technologies, Inc.", OU=Starfield Class 2 Certification Authority Certificate added: C=US, S=Arizona, L=Scottsdale, O="Starfield Technologies, Inc.", CN=Starfield Root Certificate Authority - G2 Certificate added: C=US, S=Arizona, L=Scottsdale, O="Starfield Technologies, Inc.", CN=Starfield Services Root Certificate Authority - G2 Certificate added: C=CH, O=SwissSign AG, CN=SwissSign Gold CA - G2 Certificate added: C=CH, O=SwissSign AG, CN=SwissSign Silver CA - G2 Certificate added: C=DE, O=T-Systems Enterprise Services GmbH, OU=T-Systems Trust Center, CN=T-TeleSec GlobalRoot Class 2 Certificate added: C=DE, O=T-Systems Enterprise Services GmbH, OU=T-Systems Trust Center, CN=T-TeleSec GlobalRoot Class 3 Certificate added: C=TR, L=Gebze - Kocaeli, O=Turkiye Bilimsel ve Teknolojik Arastirma Kurumu - TUBITAK, OU=Kamu Sertifikasyon Merkezi - Kamu SM, CN=TUBITAK Kamu SM SSL Kok Sertifikasi - Surum 1 Certificate added: C=TW, O=TAIWAN-CA, OU=Root CA, CN=TWCA Global Root CA Certificate added: C=TW, O=TAIWAN-CA, OU=Root CA, CN=TWCA Root Certification Authority Certificate added: O=TeliaSonera, CN=TeliaSonera Root CA v1 Certificate added: C=FI, O=Telia Finland Oyj, CN=Telia Root CA v2 Certificate added: C=CN, O="TrustAsia Technologies, Inc.", CN=TrustAsia Global Root CA G3 Certificate added: C=CN, O="TrustAsia Technologies, Inc.", CN=TrustAsia Global Root CA G4 Certificate added: C=US, S=Illinois, L=Chicago, O="Trustwave Holdings, Inc.", CN=Trustwave Global Certification Authority Certificate added: C=US, S=Illinois, L=Chicago, O="Trustwave Holdings, Inc.", CN=Trustwave Global ECC P256 Certification Authority Certificate added: C=US, S=Illinois, L=Chicago, O="Trustwave Holdings, Inc.", CN=Trustwave Global ECC P384 Certification Authority Certificate added: C=TN, O=Agence Nationale de Certification Electronique, CN=TunTrust Root CA Certificate added: C=CN, O=UniTrust, CN=UCA Extended Validation Root Certificate added: C=CN, O=UniTrust, CN=UCA Global G2 Root Certificate added: C=US, S=New Jersey, L=Jersey City, O=The USERTRUST Network, CN=USERTrust ECC Certification Authority Certificate added: C=US, S=New Jersey, L=Jersey City, O=The USERTRUST Network, CN=USERTrust RSA Certification Authority Certificate added: C=US, OU=www.xrampsecurity.com, O=XRamp Security Services Inc, CN=XRamp Global Certification Authority Certificate added: C=RO, O=certSIGN, OU=certSIGN ROOT CA Certificate added: C=RO, O=CERTSIGN SA, OU=certSIGN ROOT CA G2 Certificate added: C=HU, L=Budapest, O=Microsec Ltd., OID.2.5.4.97=VATHU-23584497, CN=e-Szigno Root CA 2017 Certificate added: C=TW, O="Chunghwa Telecom Co., Ltd.", OU=ePKI Root Certification Authority Certificate added: C=US, OU=emSign PKI, O=eMudhra Inc, CN=emSign ECC Root CA - C3 Certificate added: C=IN, OU=emSign PKI, O=eMudhra Technologies Limited, CN=emSign ECC Root CA - G3 Certificate added: C=US, OU=emSign PKI, O=eMudhra Inc, CN=emSign Root CA - C1 Certificate added: C=IN, OU=emSign PKI, O=eMudhra Technologies Limited, CN=emSign Root CA - G1 Certificate added: C=CN, O="iTrusChina Co.,Ltd.", CN=vTrus ECC Root CA Certificate added: C=CN, O="iTrusChina Co.,Ltd.", CN=vTrus Root CA 146 new root certificates were added to your trust store. Import process completed. Importing into BTLS system store: I already trust 0, your new list has 146 Certificate added: CN=ACCVRAIZ1, OU=PKIACCV, O=ACCV, C=ES Certificate added: C=ES, O=FNMT-RCM, OU=AC RAIZ FNMT-RCM Certificate added: C=ES, O=FNMT-RCM, OU=Ceres, OID.2.5.4.97=VATES-Q2826004J, CN=AC RAIZ FNMT-RCM SERVIDORES SEGUROS Certificate added: SERIALNUMBER=G63287510, C=ES, O=ANF Autoridad de Certificacion, OU=ANF CA Raiz, CN=ANF Secure Server Root CA Certificate added: C=IT, L=Milan, O=Actalis S.p.A./03358520967, CN=Actalis Authentication Root CA Certificate added: C=US, O=AffirmTrust, CN=AffirmTrust Commercial Certificate added: C=US, O=AffirmTrust, CN=AffirmTrust Networking Certificate added: C=US, O=AffirmTrust, CN=AffirmTrust Premium Certificate added: C=US, O=AffirmTrust, CN=AffirmTrust Premium ECC Certificate added: C=US, O=Amazon, CN=Amazon Root CA 1 Certificate added: C=US, O=Amazon, CN=Amazon Root CA 2 Certificate added: C=US, O=Amazon, CN=Amazon Root CA 3 Certificate added: C=US, O=Amazon, CN=Amazon Root CA 4 Certificate added: CN=Atos TrustedRoot 2011, O=Atos, C=DE Certificate added: CN=Atos TrustedRoot Root CA ECC TLS 2021, O=Atos, C=DE Certificate added: CN=Atos TrustedRoot Root CA RSA TLS 2021, O=Atos, C=DE Certificate added: C=ES, CN=Autoridad de Certificacion Firmaprofesional CIF A62634068 Certificate added: C=CN, O=BEIJING CERTIFICATE AUTHORITY, CN=BJCA Global Root CA1 Certificate added: C=CN, O=BEIJING CERTIFICATE AUTHORITY, CN=BJCA Global Root CA2 Certificate added: C=IE, O=Baltimore, OU=CyberTrust, CN=Baltimore CyberTrust Root Certificate added: C=NO, O=Buypass AS-983163327, CN=Buypass Class 2 Root CA Certificate added: C=NO, O=Buypass AS-983163327, CN=Buypass Class 3 Root CA Certificate added: C=SK, L=Bratislava, O=Disig a.s., CN=CA Disig Root R2 Certificate added: C=CN, O=China Financial Certification Authority, CN=CFCA EV ROOT Certificate added: C=GB, S=Greater Manchester, L=Salford, O=COMODO CA Limited, CN=COMODO Certification Authority Certificate added: C=GB, S=Greater Manchester, L=Salford, O=COMODO CA Limited, CN=COMODO ECC Certification Authority Certificate added: C=GB, S=Greater Manchester, L=Salford, O=COMODO CA Limited, CN=COMODO RSA Certification Authority Certificate added: C=US, O=Certainly, CN=Certainly Root E1 Certificate added: C=US, O=Certainly, CN=Certainly Root R1 Certificate added: C=FR, O=Dhimyotis, CN=Certigna Certificate added: C=FR, O=Dhimyotis, OU=0002 48146308100036, CN=Certigna Root CA Certificate added: C=PL, O=Asseco Data Systems S.A., OU=Certum Certification Authority, CN=Certum EC-384 CA Certificate added: C=PL, O=Unizeto Technologies S.A., OU=Certum Certification Authority, CN=Certum Trusted Network CA Certificate added: C=PL, O=Unizeto Technologies S.A., OU=Certum Certification Authority, CN=Certum Trusted Network CA 2 Certificate added: C=PL, O=Asseco Data Systems S.A., OU=Certum Certification Authority, CN=Certum Trusted Root CA Certificate added: C=US, O=CommScope, CN=CommScope Public Trust ECC Root-01 Certificate added: C=US, O=CommScope, CN=CommScope Public Trust ECC Root-02 Certificate added: C=US, O=CommScope, CN=CommScope Public Trust RSA Root-01 Certificate added: C=US, O=CommScope, CN=CommScope Public Trust RSA Root-02 Certificate added: C=GB, S=Greater Manchester, L=Salford, O=Comodo CA Limited, CN=AAA Certificate Services Certificate added: C=DE, O=D-Trust GmbH, CN=D-TRUST BR Root CA 1 2020 Certificate added: C=DE, O=D-Trust GmbH, CN=D-TRUST EV Root CA 1 2020 Certificate added: C=DE, O=D-Trust GmbH, CN=D-TRUST Root Class 3 CA 2 2009 Certificate added: C=DE, O=D-Trust GmbH, CN=D-TRUST Root Class 3 CA 2 EV 2009 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Assured ID Root CA Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Assured ID Root G2 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Assured ID Root G3 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Global Root CA Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Global Root G2 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Global Root G3 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert High Assurance EV Root CA Certificate added: C=US, O="DigiCert, Inc.", CN=DigiCert TLS ECC P384 Root G5 Certificate added: C=US, O="DigiCert, Inc.", CN=DigiCert TLS RSA4096 Root G5 Certificate added: C=US, O=DigiCert Inc, OU=www.digicert.com, CN=DigiCert Trusted Root G4 Certificate added: O=Entrust.net, OU=www.entrust.net/CPS_2048 incorp. by ref. (limits liab.), OU=(c) 1999 Entrust.net Limited, CN=Entrust.net Certification Authority (2048) Certificate added: C=US, O="Entrust, Inc.", OU=www.entrust.net/CPS is incorporated by reference, OU="(c) 2006 Entrust, Inc.", CN=Entrust Root Certification Authority Certificate added: C=US, O="Entrust, Inc.", OU=See www.entrust.net/legal-terms, OU="(c) 2012 Entrust, Inc. - for authorized use only", CN=Entrust Root Certification Authority - EC1 Certificate added: C=US, O="Entrust, Inc.", OU=See www.entrust.net/legal-terms, OU="(c) 2009 Entrust, Inc. - for authorized use only", CN=Entrust Root Certification Authority - G2 Certificate added: C=US, O="Entrust, Inc.", OU=See www.entrust.net/legal-terms, OU="(c) 2015 Entrust, Inc. - for authorized use only", CN=Entrust Root Certification Authority - G4 Certificate added: C=CN, O="GUANG DONG CERTIFICATE AUTHORITY CO.,LTD.", CN=GDCA TrustAUTH R5 ROOT Certificate added: C=AT, O=e-commerce monitoring GmbH, CN=GLOBALTRUST 2020 Certificate added: C=US, O=Google Trust Services LLC, CN=GTS Root R1 Certificate added: C=US, O=Google Trust Services LLC, CN=GTS Root R2 Certificate added: C=US, O=Google Trust Services LLC, CN=GTS Root R3 Certificate added: C=US, O=Google Trust Services LLC, CN=GTS Root R4 Certificate added: OU=GlobalSign ECC Root CA - R4, O=GlobalSign, CN=GlobalSign Certificate added: OU=GlobalSign ECC Root CA - R5, O=GlobalSign, CN=GlobalSign Certificate added: C=BE, O=GlobalSign nv-sa, OU=Root CA, CN=GlobalSign Root CA Certificate added: OU=GlobalSign Root CA - R3, O=GlobalSign, CN=GlobalSign Certificate added: OU=GlobalSign Root CA - R6, O=GlobalSign, CN=GlobalSign Certificate added: C=BE, O=GlobalSign nv-sa, CN=GlobalSign Root E46 Certificate added: C=BE, O=GlobalSign nv-sa, CN=GlobalSign Root R46 Certificate added: C=US, O="The Go Daddy Group, Inc.", OU=Go Daddy Class 2 Certification Authority Certificate added: C=US, S=Arizona, L=Scottsdale, O="GoDaddy.com, Inc.", CN=Go Daddy Root Certificate Authority - G2 Certificate added: C=GR, O=Hellenic Academic and Research Institutions CA, CN=HARICA TLS ECC Root CA 2021 Certificate added: C=GR, O=Hellenic Academic and Research Institutions CA, CN=HARICA TLS RSA Root CA 2021 Certificate added: C=GR, L=Athens, O=Hellenic Academic and Research Institutions Cert. Authority, CN=Hellenic Academic and Research Institutions ECC RootCA 2015 Certificate added: C=GR, L=Athens, O=Hellenic Academic and Research Institutions Cert. Authority, CN=Hellenic Academic and Research Institutions RootCA 2015 Certificate added: C=TW, O="Chunghwa Telecom Co., Ltd.", CN=HiPKI Root CA - G1 Certificate added: C=HK, S=Hong Kong, L=Hong Kong, O=Hongkong Post, CN=Hongkong Post Root CA 3 Certificate added: C=US, O=Internet Security Research Group, CN=ISRG Root X1 Certificate added: C=US, O=Internet Security Research Group, CN=ISRG Root X2 Certificate added: C=US, O=IdenTrust, CN=IdenTrust Commercial Root CA 1 Certificate added: C=US, O=IdenTrust, CN=IdenTrust Public Sector Root CA 1 Certificate added: C=ES, O=IZENPE S.A., CN=Izenpe.com Certificate added: C=HU, L=Budapest, O=Microsec Ltd., CN=Microsec e-Szigno Root CA 2009, E=info@e-szigno.hu Certificate added: C=US, O=Microsoft Corporation, CN=Microsoft ECC Root Certificate Authority 2017 Certificate added: C=US, O=Microsoft Corporation, CN=Microsoft RSA Root Certificate Authority 2017 Certificate added: C=KR, O=NAVER BUSINESS PLATFORM Corp., CN=NAVER Global Root Certification Authority Certificate added: C=HU, L=Budapest, O=NetLock Kft., OU=Tanúsítványkiadók (Certification Services), CN=NetLock Arany (Class Gold) Főtanúsítvány Certificate added: C=CH, O=WISeKey, OU=OISTE Foundation Endorsed, CN=OISTE WISeKey Global Root GB CA Certificate added: C=CH, O=WISeKey, OU=OISTE Foundation Endorsed, CN=OISTE WISeKey Global Root GC CA Certificate added: C=BM, O=QuoVadis Limited, CN=QuoVadis Root CA 1 G3 Certificate added: C=BM, O=QuoVadis Limited, CN=QuoVadis Root CA 2 Certificate added: C=BM, O=QuoVadis Limited, CN=QuoVadis Root CA 2 G3 Certificate added: C=BM, O=QuoVadis Limited, CN=QuoVadis Root CA 3 Certificate added: C=BM, O=QuoVadis Limited, CN=QuoVadis Root CA 3 G3 Certificate added: C=US, S=Texas, L=Houston, O=SSL Corporation, CN=SSL.com EV Root Certification Authority ECC Certificate added: C=US, S=Texas, L=Houston, O=SSL Corporation, CN=SSL.com EV Root Certification Authority RSA R2 Certificate added: C=US, S=Texas, L=Houston, O=SSL Corporation, CN=SSL.com Root Certification Authority ECC Certificate added: C=US, S=Texas, L=Houston, O=SSL Corporation, CN=SSL.com Root Certification Authority RSA Certificate added: C=US, O=SSL Corporation, CN=SSL.com TLS ECC Root CA 2022 Certificate added: C=US, O=SSL Corporation, CN=SSL.com TLS RSA Root CA 2022 Certificate added: C=PL, O=Krajowa Izba Rozliczeniowa S.A., CN=SZAFIR ROOT CA2 Certificate added: C=GB, O=Sectigo Limited, CN=Sectigo Public Server Authentication Root E46 Certificate added: C=GB, O=Sectigo Limited, CN=Sectigo Public Server Authentication Root R46 Certificate added: C=JP, O="Japan Certification Services, Inc.", CN=SecureSign RootCA11 Certificate added: C=US, O=SecureTrust Corporation, CN=SecureTrust CA Certificate added: C=US, O=SecureTrust Corporation, CN=Secure Global CA Certificate added: C=JP, O="SECOM Trust Systems CO.,LTD.", CN=Security Communication ECC RootCA1 Certificate added: C=JP, O="SECOM Trust Systems CO.,LTD.", OU=Security Communication RootCA2 Certificate added: C=JP, O="SECOM Trust Systems CO.,LTD.", CN=Security Communication RootCA3 Certificate added: C=JP, O=SECOM Trust.net, OU=Security Communication RootCA1 Certificate added: C=US, O="Starfield Technologies, Inc.", OU=Starfield Class 2 Certification Authority Certificate added: C=US, S=Arizona, L=Scottsdale, O="Starfield Technologies, Inc.", CN=Starfield Root Certificate Authority - G2 Certificate added: C=US, S=Arizona, L=Scottsdale, O="Starfield Technologies, Inc.", CN=Starfield Services Root Certificate Authority - G2 Certificate added: C=CH, O=SwissSign AG, CN=SwissSign Gold CA - G2 Certificate added: C=CH, O=SwissSign AG, CN=SwissSign Silver CA - G2 Certificate added: C=DE, O=T-Systems Enterprise Services GmbH, OU=T-Systems Trust Center, CN=T-TeleSec GlobalRoot Class 2 Certificate added: C=DE, O=T-Systems Enterprise Services GmbH, OU=T-Systems Trust Center, CN=T-TeleSec GlobalRoot Class 3 Certificate added: C=TR, L=Gebze - Kocaeli, O=Turkiye Bilimsel ve Teknolojik Arastirma Kurumu - TUBITAK, OU=Kamu Sertifikasyon Merkezi - Kamu SM, CN=TUBITAK Kamu SM SSL Kok Sertifikasi - Surum 1 Certificate added: C=TW, O=TAIWAN-CA, OU=Root CA, CN=TWCA Global Root CA Certificate added: C=TW, O=TAIWAN-CA, OU=Root CA, CN=TWCA Root Certification Authority Certificate added: O=TeliaSonera, CN=TeliaSonera Root CA v1 Certificate added: C=FI, O=Telia Finland Oyj, CN=Telia Root CA v2 Certificate added: C=CN, O="TrustAsia Technologies, Inc.", CN=TrustAsia Global Root CA G3 Certificate added: C=CN, O="TrustAsia Technologies, Inc.", CN=TrustAsia Global Root CA G4 Certificate added: C=US, S=Illinois, L=Chicago, O="Trustwave Holdings, Inc.", CN=Trustwave Global Certification Authority Certificate added: C=US, S=Illinois, L=Chicago, O="Trustwave Holdings, Inc.", CN=Trustwave Global ECC P256 Certification Authority Certificate added: C=US, S=Illinois, L=Chicago, O="Trustwave Holdings, Inc.", CN=Trustwave Global ECC P384 Certification Authority Certificate added: C=TN, O=Agence Nationale de Certification Electronique, CN=TunTrust Root CA Certificate added: C=CN, O=UniTrust, CN=UCA Extended Validation Root Certificate added: C=CN, O=UniTrust, CN=UCA Global G2 Root Certificate added: C=US, S=New Jersey, L=Jersey City, O=The USERTRUST Network, CN=USERTrust ECC Certification Authority Certificate added: C=US, S=New Jersey, L=Jersey City, O=The USERTRUST Network, CN=USERTrust RSA Certification Authority Certificate added: C=US, OU=www.xrampsecurity.com, O=XRamp Security Services Inc, CN=XRamp Global Certification Authority Certificate added: C=RO, O=certSIGN, OU=certSIGN ROOT CA Certificate added: C=RO, O=CERTSIGN SA, OU=certSIGN ROOT CA G2 Certificate added: C=HU, L=Budapest, O=Microsec Ltd., OID.2.5.4.97=VATHU-23584497, CN=e-Szigno Root CA 2017 Certificate added: C=TW, O="Chunghwa Telecom Co., Ltd.", OU=ePKI Root Certification Authority Certificate added: C=US, OU=emSign PKI, O=eMudhra Inc, CN=emSign ECC Root CA - C3 Certificate added: C=IN, OU=emSign PKI, O=eMudhra Technologies Limited, CN=emSign ECC Root CA - G3 Certificate added: C=US, OU=emSign PKI, O=eMudhra Inc, CN=emSign Root CA - C1 Certificate added: C=IN, OU=emSign PKI, O=eMudhra Technologies Limited, CN=emSign Root CA - G1 Certificate added: C=CN, O="iTrusChina Co.,Ltd.", CN=vTrus ECC Root CA Certificate added: C=CN, O="iTrusChina Co.,Ltd.", CN=vTrus Root CA 146 new root certificates were added to your trust store. Import process completed. Done done. Setting up mono-devel (6.8.0.105+dfsg-3.6) ... update-alternatives: using /usr/bin/mono-csc to provide /usr/bin/cli-csc (c-sharp-compiler) in auto mode update-alternatives: using /usr/bin/resgen to provide /usr/bin/cli-resgen (resource-file-generator) in auto mode update-alternatives: using /usr/bin/al to provide /usr/bin/cli-al (assembly-linker) in auto mode update-alternatives: using /usr/bin/sn to provide /usr/bin/cli-sn (strong-name-tool) in auto mode Setting up cli-common-dev (0.10+nmu2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for ca-certificates-java (20240118) ... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-12 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.12-1 Package versions: adduser_3.137 aglfn_1.7+git20191031.4036a9c-2 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 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texinfo-lib_7.1-3+b1 tzdata_2024a-4 ucf_3.0043+nmu1 unzip_6.0-28 usr-is-merged_39 util-linux_2.40.1-4 x11-common_1:7.7+23 x11proto-dev_2024.1-1 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xkb-data_2.41-2 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.6.1+really5.4.5-1 zip_3.0-13 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libsbml Binary: libsbml5-dev, libsbml5t64, python3-sbml5, libsbml5-java, libsbml5-perl, libsbml5-octave, libsbml5-cil, libsbml5-examples, libsbml5-doc, libsbml5-cil-doc, libsbml5-perl-doc, python3-sbml5-doc Architecture: any all Version: 5.20.2+dfsg-7 Maintainer: Debian Med Packaging Team Uploaders: Ivo Maintz , Andreas Tille Homepage: http://www.sbml.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libsbml Vcs-Git: https://salsa.debian.org/med-team/libsbml.git Testsuite: autopkgtest Testsuite-Triggers: python3 Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-sequence-python3, dh-sequence-cli [!mips64el !riscv64 !loong64 !sh4 !sparc64 !x32 !hurd-any !ia64], cmake, dh-exec, doxygen , swig, libxml2-dev, python3-dev, perl, libperl-dev, default-jdk-headless, default-jdk-doc, dh-octave, r-base-dev, r-base-core, graphviz , zlib1g-dev, libbz2-dev, libnewlib-dev, check, rdfind Package-List: libsbml5-cil deb cli-mono optional arch=any-amd64,arm64,armel,armhf,any-i386,ppc64el,s390x,powerpc,ppc64 libsbml5-cil-doc deb doc optional arch=all profile=!nodoc libsbml5-dev deb libdevel optional arch=any libsbml5-doc deb doc optional arch=all profile=!nodoc libsbml5-examples deb doc optional arch=all profile=!nodoc libsbml5-java deb java optional arch=any libsbml5-octave deb math optional arch=any libsbml5-perl 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info: unpacking libsbml_5.20.2+dfsg.orig.tar.xz dpkg-source: info: unpacking libsbml_5.20.2+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying perl-installdirs.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying swig-3.x.patch dpkg-source: info: applying mips-compile-with-O1.patch dpkg-source: info: applying javadoc_java9.patch dpkg-source: info: applying javadoc.patch dpkg-source: info: applying remove_SBMLDoclet.patch dpkg-source: info: applying fix_build_issue.patch dpkg-source: info: applying fix_python_interpreter.patch dpkg-source: info: applying missing_header.patch dpkg-source: info: applying doxygen_mathjax_path.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libsbml_5.20.2+dfsg-7 sid amd64 ------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libsbml_5.20.2+dfsg-7 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=sid-amd64-debomatic SCHROOT_CHROOT_NAME=sid-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=sid-amd64-debomatic-42a53d1e-56db-42cf-ad07-7a4dc5709b46 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libsbml dpkg-buildpackage: info: source version 5.20.2+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from libsbml-5.20.2+dfsg/debian/source/options: --extend-diff-ignore=(^|/)(src/sbml/validator/constraints/.*|src/bindings/csharp/csharp-files.*|src/sbml/extension/SBMLExtensionRegistry.*|src/sbml/packages/comp/validator/constraints/CompIdBase.cpp|src/bindings/java/java-files/org/sbml/libsbml/SBMLExtensionRegistry.java|src/sbml/xml/XMLErrorLog.cpp|docs/src/doxygen-config-common.txt)$ debian/rules clean dh clean --builddir=build --buildsystem=cmake --without autoreconf --no-parallel dh_auto_clean -O--builddir=build -O--buildsystem=cmake -O--no-parallel debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/<>' ### the clean target of the libsbml makefile is highly b0rken ### ### the switch to cmake didn't result in great approvements ### ### still inline changes of files ### ### very ugly ### rm -rf build docs/formatted docs/src/doxygen-version-specific.txt docs/src/doxygen-config-cpp.txt \ docs/src/doxygen-config-csharp.txt docs/src/doxygen-config-perl.txt docs/src/doxygen-config-python.txt \ docs/src/java-substitutions/libsbmlConstants.java docs/src/libsbml-installation.html docs/src/perlmod/DoxyDocs.pm \ docs/src/perlmod/DoxyStructure.pm docs/src/perlmod/Makefile docs/src/perlmod/doxyrules.make \ src/bindings/matlab/runTests.log docs/src/doxygen-config-c.txt src/bindings/matlab/*.mex* docs/src/perlmod \ docs/src/doxygen_sqlite3.db docs/src/libsbml.py docs/src/common-text/libsbml-version.html find src/bindings -name "*.pyc" -delete make[1]: Leaving directory '/<>' dh_clean -O--builddir=build -O--buildsystem=cmake -O--no-parallel dpkg-source -Zxz -b . dpkg-source: info: using options from libsbml-5.20.2+dfsg/debian/source/options: --extend-diff-ignore=(^|/)(src/sbml/validator/constraints/.*|src/bindings/csharp/csharp-files.*|src/sbml/extension/SBMLExtensionRegistry.*|src/sbml/packages/comp/validator/constraints/CompIdBase.cpp|src/bindings/java/java-files/org/sbml/libsbml/SBMLExtensionRegistry.java|src/sbml/xml/XMLErrorLog.cpp|docs/src/doxygen-config-common.txt)$ dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libsbml using existing ./libsbml_5.20.2+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libsbml in libsbml_5.20.2+dfsg-7.debian.tar.xz dpkg-source: info: building libsbml in libsbml_5.20.2+dfsg-7.dsc debian/rules binary dh binary --builddir=build --buildsystem=cmake --without autoreconf --no-parallel dh_update_autotools_config -O--builddir=build -O--buildsystem=cmake -O--no-parallel cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DENABLE_COMP:BOOL=ON -DENABLE_FBC:BOOL=ON -DENABLE_GROUPS:BOOL=ON -DENABLE_LAYOUT:BOOL=ON -DENABLE_QUAL:BOOL=ON -DENABLE_RENDER:BOOL=ON -DWITH_BZIP2:BOOL=ON -DWITH_CPP_NAMESPACE:BOOL=OFF -DWITH_EXAMPLES:BOOL=OFF -DWITH_EXPAT:BOOL=OFF -DWITH_JAVA:BOOL=ON -DWITH_LIBXML:BOOL=ON -DWITH_OCTAVE:BOOL=ON -DWITH_PERL:BOOL=ON -DWITH_PYTHON:BOOL=ON -DWITH_R:BOOL=OFF -DWITH_RUBY:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_WALL:BOOL=ON -DWITH_XERCES:BOOL=OFF -DWITH_ZLIB:BOOL=ON -DJDK_PATH:STRING=/usr/lib/jvm/default-java -DJAVA_INCLUDE_PATH:STRING=/usr/lib/jvm/default-java/include -DWITH_DOXYGEN:BOOL=ON -DWITH_CHECK:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3.11 -DWITH_CSHARP:BOOL=ON cd build && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DENABLE_COMP:BOOL=ON -DENABLE_FBC:BOOL=ON -DENABLE_GROUPS:BOOL=ON -DENABLE_LAYOUT:BOOL=ON -DENABLE_QUAL:BOOL=ON -DENABLE_RENDER:BOOL=ON -DWITH_BZIP2:BOOL=ON -DWITH_CPP_NAMESPACE:BOOL=OFF -DWITH_EXAMPLES:BOOL=OFF -DWITH_EXPAT:BOOL=OFF -DWITH_JAVA:BOOL=ON -DWITH_LIBXML:BOOL=ON -DWITH_OCTAVE:BOOL=ON -DWITH_PERL:BOOL=ON -DWITH_PYTHON:BOOL=ON -DWITH_R:BOOL=OFF -DWITH_RUBY:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_WALL:BOOL=ON -DWITH_XERCES:BOOL=OFF -DWITH_ZLIB:BOOL=ON -DJDK_PATH:STRING=/usr/lib/jvm/default-java -DJAVA_INCLUDE_PATH:STRING=/usr/lib/jvm/default-java/include -DWITH_DOXYGEN:BOOL=ON -DWITH_CHECK:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3.11 -DWITH_CSHARP:BOOL=ON .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "4.2.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Looking for sin in m -- Looking for sin in m - found -- Performing Test LIBXML_LIBXML_TEST -- Performing Test LIBXML_LIBXML_TEST - Success -- LIBXML_LIBXML_TEST = 1 -- Found LIBXML: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.12.7") -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so - found -- Found BZ2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for gzopen in /usr/lib/x86_64-linux-gnu/libz.so -- Looking for gzopen in /usr/lib/x86_64-linux-gnu/libz.so - found -- Performing Test CHECK_CHECK_TEST -- Performing Test CHECK_CHECK_TEST - Failed -- Performing Test CHECK_CHECK_TEST2 -- Performing Test CHECK_CHECK_TEST2 - Success -- Found CHECK: /usr/lib/x86_64-linux-gnu/libcheck.a (found version "0.2") -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for sqrt in m -- Looking for sqrt in m - found CMake Warning (dev) at src/bindings/csharp/CMakeLists.txt:35 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3.11 (found version "3.11.9") -- Could NOT find JNI (missing: AWT) -- Found Java: /usr/bin/java (found version "17.0.11") found components: Development CMake Warning (dev) at src/bindings/java/CMakeLists.txt:37 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/perl/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Perl: /usr/bin/perl (found version "5.38.2") -- Found PerlLibs: /usr/lib/x86_64-linux-gnu/libperl.so.5.38 (found version "5.38.2") CMake Warning (dev) at src/bindings/octave/FindOctave.cmake:83: Syntax Warning in cmake code at column 32 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): src/bindings/octave/CMakeLists.txt:36 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/octave/FindOctave.cmake:88: Syntax Warning in cmake code at column 32 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): src/bindings/octave/CMakeLists.txt:36 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/octave/FindOctave.cmake:93: Syntax Warning in cmake code at column 32 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): src/bindings/octave/CMakeLists.txt:36 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. mkoctfile: unknown variable 'LFLAGS' CMake Warning (dev) at src/bindings/python/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/python/CMakeLists.txt:41 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.11.so (found version "3.11.9") -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot CMake Warning (dev) at docs/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------------------------------------------------------------------- libSBML version 5.20.2 ---------------------------------------------------------------------- More information and the latest version are available online at https://sbml.org/software/libsbml/ Please report problems using the issue tracker at https://github.com/sbmlteam/libsbml/issues To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'carme' host type = Linux host operating system = Linux 6.1.0-21-amd64 host CPU architecture = x86_64 General build flags: CC = /usr/bin/cc CXX = /usr/bin/c++ CPPFLAGS = -DLINUX CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC CXXFLAGS = -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,-z,now XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib/x86_64-linux-gnu/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = /usr/lib/libeatmydata -- Using SWIG = /usr/bin/swig (Version 4.2.1) -- Using C# = /usr/bin/mcs -- Using Java = /usr/bin/java -- Using Python = /usr/bin/python3.11 -- Using Perl = /usr/bin/perl -- Using Octave = /usr/bin/mkoctfile -- Using libcheck = /usr/lib/x86_64-linux-gnu/libcheck.a -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'arrays' package = OFF -- SBML 'comp' package = ON -- SBML 'distrib' package = OFF -- SBML 'dyn' package = OFF -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = OFF -- SBML 'qual' package = ON -- SBML 'render' package = ON -- SBML 'req' package = OFF -- SBML 'spatial' package = OFF -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done (2.8s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/build make[1]: Leaving directory '/<>' dh_auto_build -O--builddir=build -O--buildsystem=cmake -O--no-parallel cd build && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/build' /usr/bin/cmake -S/<> -B/<>/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/CMakeFiles /<>/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build' make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make[3]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build /<>/build/src /<>/build/src/CMakeFiles/sbml.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/build' make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[3]: Entering directory '/<>/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /<>/src/sbml/packages/comp/extension/CompExtension.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegister.h:64, from /<>/src/sbml/packages/comp/extension/CompExtension.cpp:36: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /<>/src/sbml/packages/comp/extension/CompModelPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/packages/comp/extension/CompModelPlugin.h:66, from /<>/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73, from /<>/src/sbml/packages/comp/extension/CompModelPlugin.h:70: /<>/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Submodel* CompModelPlugin::createSubmodel()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompModelPlugin.cpp:318:3: note: in expansion of macro ‘COMP_CREATE_NS’ 318 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Port* CompModelPlugin::createPort()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompModelPlugin.cpp:459:3: note: in expansion of macro ‘COMP_CREATE_NS’ 459 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /<>/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:71, from /<>/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73, from /<>/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75: /<>/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:405:3: note: in expansion of macro ‘COMP_CREATE_NS’ 405 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:546:3: note: in expansion of macro ‘COMP_CREATE_NS’ 546 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /<>/src/sbml/packages/comp/extension/CompSBasePlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/packages/comp/extension/CompSBasePlugin.h:68, from /<>/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73, from /<>/src/sbml/packages/comp/extension/CompSBasePlugin.h:72: /<>/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro ‘COMP_CREATE_NS’ 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedElement* CompSBasePlugin::createReplacedElement()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:378:3: note: in expansion of macro ‘COMP_CREATE_NS’ 378 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedBy* CompSBasePlugin::createReplacedBy()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:452:3: note: in expansion of macro ‘COMP_CREATE_NS’ 452 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::createListOfReplacedElements()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:559:5: note: in expansion of macro ‘COMP_CREATE_NS’ 559 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /<>/src/sbml/packages/comp/sbml/CompBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/sbml/CompBase.h:52, from /<>/src/sbml/packages/comp/sbml/CompBase.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /<>/src/sbml/packages/comp/sbml/Deletion.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/Deletion.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /<>/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /<>/src/sbml/packages/comp/sbml/ListOfDeletions.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual SBase* ListOfDeletions::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro ‘COMP_CREATE_NS’ 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /<>/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function ‘virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /<>/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function ‘virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /<>/src/sbml/packages/comp/sbml/ListOfPorts.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual SBase* ListOfPorts::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /<>/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function ‘virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro ‘COMP_CREATE_NS’ 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /<>/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /<>/src/sbml/packages/comp/sbml/ModelDefinition.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/ModelDefinition.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -c /<>/src/sbml/packages/comp/sbml/Port.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/Port.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /<>/src/sbml/packages/comp/sbml/ReplacedBy.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/ReplacedBy.h:64, from /<>/src/sbml/packages/comp/sbml/ReplacedBy.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /<>/src/sbml/packages/comp/sbml/ReplacedElement.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/ReplacedElement.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /<>/src/sbml/packages/comp/sbml/Replacing.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/Replacing.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /<>/src/sbml/packages/comp/sbml/SBaseRef.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘SBaseRef* SBaseRef::createSBaseRef()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/SBaseRef.cpp:557:5: note: in expansion of macro ‘COMP_CREATE_NS’ 557 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual SBase* SBaseRef::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/SBaseRef.cpp:676:7: note: in expansion of macro ‘COMP_CREATE_NS’ 676 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/SBaseRef.cpp:687:7: note: in expansion of macro ‘COMP_CREATE_NS’ 687 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /<>/src/sbml/packages/comp/sbml/Submodel.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/L3Parser.h:46, from /<>/src/sbml/packages/comp/sbml/Submodel.cpp:41: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/comp/extension/CompExtension.h:68, from /<>/src/sbml/packages/comp/sbml/Submodel.cpp:48: /<>/src/sbml/packages/comp/sbml/Submodel.cpp: In member function ‘Deletion* Submodel::createDeletion()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/sbml/Submodel.cpp:502:3: note: in expansion of macro ‘COMP_CREATE_NS’ 502 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /<>/src/sbml/packages/comp/util/CompFlatteningConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/packages/comp/extension/CompModelPlugin.h:66, from /<>/src/sbml/packages/comp/util/CompFlatteningConverter.h:492, from /<>/src/sbml/packages/comp/util/CompFlatteningConverter.cpp:38: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /<>/src/sbml/packages/comp/util/SBMLFileResolver.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/packages/comp/util/SBMLFileResolver.cpp:38: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /<>/src/sbml/packages/comp/util/SBMLResolver.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/packages/comp/util/SBMLResolver.cpp:38: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /<>/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /<>/src/sbml/packages/comp/util/SBMLUri.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/packages/comp/util/SBMLUri.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /<>/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:39, from /<>/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /<>/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:39, from /<>/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -c /<>/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:39, from /<>/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o -c /<>/src/sbml/packages/comp/validator/CompValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/comp/validator/CompValidator.cpp:41: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/comp/validator/constraints/CompIdBase.h:45, from /<>/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73, from /<>/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /<>/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /<>/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function ‘void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro ‘COMP_CREATE_NS’ 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73, from /<>/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /<>/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /<>/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function ‘void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro ‘COMP_CREATE_NS’ 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/comp/validator/constraints/CompIdBase.h:45, from /<>/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /<>/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -c /<>/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /<>/src/sbml/packages/fbc/extension/FbcExtension.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegister.h:64, from /<>/src/sbml/packages/fbc/extension/FbcExtension.cpp:38: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.h:146, from /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73, from /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150: /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘FluxBound* FbcModelPlugin::createFluxBound()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:687:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 687 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘Objective* FbcModelPlugin::createObjective()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:952:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 952 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneProduct* FbcModelPlugin::createGeneProduct()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1132:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1132 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneAssociation* FbcModelPlugin::createGeneAssociation()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1339:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1339 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘UserDefinedConstraint* FbcModelPlugin::createUserDefinedConstraint()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1578:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1578 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createChildObject(const std::string&)’: /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2049:10: warning: unused variable ‘obj’ [-Wunused-variable] 2049 | SBase* obj = NULL; | ^~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual unsigned int FbcModelPlugin::getNumObjects(const std::string&)’: /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2152:16: warning: unused variable ‘n’ [-Wunused-variable] 2152 | unsigned int n = 0; | ^ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::getObject(const std::string&, unsigned int)’: /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2186:10: warning: unused variable ‘obj’ [-Wunused-variable] 2186 | SBase* obj = NULL; | ^~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2408:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 2408 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBasePlugin.h:70, from /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73: /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:451:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 451 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createChildObject(const std::string&)’: /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:900:10: warning: unused variable ‘obj’ [-Wunused-variable] 900 | SBase* obj = NULL; | ^~~ /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual unsigned int FbcReactionPlugin::getNumObjects(const std::string&)’: /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:922:16: warning: unused variable ‘n’ [-Wunused-variable] 922 | unsigned int n = 0; | ^ /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::getObject(const std::string&, unsigned int)’: /<>/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:948:10: warning: unused variable ‘obj’ [-Wunused-variable] 948 | SBase* obj = NULL; | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /<>/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBMLDocumentPlugin.h:73, from /<>/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:66, from /<>/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:35: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -c /<>/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBasePlugin.h:70, from /<>/src/sbml/packages/fbc/extension/FbcSBasePlugin.h:52, from /<>/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73: /<>/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp: In member function ‘KeyValuePair* FbcSBasePlugin::createKeyValuePair()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:233:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /<>/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:90, from /<>/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /<>/src/sbml/packages/fbc/sbml/Association.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/Association.h:65, from /<>/src/sbml/packages/fbc/sbml/Association.cpp:48: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /<>/src/sbml/packages/fbc/sbml/FbcAnd.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/FbcAnd.h:78, from /<>/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcAnd* FbcAnd::createAnd()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAnd.cpp:305:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 305 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcOr* FbcAnd::createOr()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAnd.cpp:342:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 342 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘GeneProductRef* FbcAnd::createGeneProductRef()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAnd.cpp:379:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/FbcAssociation.h:110, from /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcAnd* ListOfFbcAssociations::createAnd()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:957:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 957 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcOr* ListOfFbcAssociations::createOr()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:994:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘GeneProductRef* ListOfFbcAssociations::createGeneProductRef()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1031:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1031 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1127:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1127 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1135:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1135 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1143:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1143 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1151:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1151 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /<>/src/sbml/packages/fbc/sbml/FbcOr.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/FbcOr.h:78, from /<>/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcAnd* FbcOr::createAnd()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcOr.cpp:317:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 317 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcOr* FbcOr::createOr()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcOr.cpp:354:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 354 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘GeneProductRef* FbcOr::createGeneProductRef()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FbcOr.cpp:391:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 391 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /<>/src/sbml/packages/fbc/sbml/FluxBound.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/FluxBound.h:131, from /<>/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function ‘virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FluxBound.cpp:1189:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1189 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /<>/src/sbml/packages/fbc/sbml/FluxObjective.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/FluxObjective.h:98, from /<>/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘FluxObjective* ListOfFluxObjectives::createFluxObjective()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1397:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1397 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1493:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1493 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /<>/src/sbml/packages/fbc/sbml/GeneAssociation.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/GeneAssociation.h:68, from /<>/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘Association* GeneAssociation::createAssociation()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:704:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 704 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /<>/src/sbml/packages/fbc/sbml/GeneProduct.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/GeneProduct.h:94, from /<>/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘GeneProduct* ListOfGeneProducts::createGeneProduct()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1116:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1116 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1212:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1212 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101, from /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcAnd* GeneProductAssociation::createAnd()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:218:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 218 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcOr* GeneProductAssociation::createOr()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:233:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:248:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 248 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:994:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /<>/src/sbml/packages/fbc/sbml/GeneProductRef.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/packages/fbc/extension/FbcModelPlugin.h:146, from /<>/src/sbml/packages/fbc/sbml/GeneProductRef.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -c /<>/src/sbml/packages/fbc/sbml/KeyValuePair.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/KeyValuePair.h:58, from /<>/src/sbml/packages/fbc/sbml/KeyValuePair.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/KeyValuePair.cpp: In member function ‘virtual void KeyValuePair::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /<>/src/sbml/packages/fbc/sbml/KeyValuePair.cpp:887:8: warning: unused variable ‘assigned’ [-Wunused-variable] 887 | bool assigned = false; | ^~~~~~~~ /<>/src/sbml/packages/fbc/sbml/KeyValuePair.cpp: In member function ‘virtual void KeyValuePair::writeAttributes(XMLOutputStream&) const’: /<>/src/sbml/packages/fbc/sbml/KeyValuePair.cpp:1067:16: warning: unused variable ‘version’ [-Wunused-variable] 1067 | unsigned int version = getVersion(); | ^~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -c /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.h:58, from /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘int ListOfKeyValuePairs::setXmlns(const std::string&)’: /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:160:16: warning: unused variable ‘coreVersion’ [-Wunused-variable] 160 | unsigned int coreVersion = getVersion(); | ^~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘KeyValuePair* ListOfKeyValuePairs::createKeyValuePair()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:326:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 326 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual bool ListOfKeyValuePairs::hasRequiredAttributes() const’: /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:386:16: warning: unused variable ‘version’ [-Wunused-variable] 386 | unsigned int version = getVersion(); | ^~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual SBase* ListOfKeyValuePairs::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:412:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 412 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual void ListOfKeyValuePairs::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:457:8: warning: unused variable ‘assigned’ [-Wunused-variable] 457 | bool assigned = false; | ^~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘void ListOfKeyValuePairs::readL3V1V3Attributes(const XMLAttributes&)’: /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:507:16: warning: unused variable ‘pkgVersion’ [-Wunused-variable] 507 | unsigned int pkgVersion = getPackageVersion(); | ^~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:508:17: warning: unused variable ‘log’ [-Wunused-variable] 508 | SBMLErrorLog* log = getErrorLog(); | ^~~ /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual void ListOfKeyValuePairs::writeAttributes(XMLOutputStream&) const’: /<>/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:554:16: warning: unused variable ‘version’ [-Wunused-variable] 554 | unsigned int version = getVersion(); | ^~~~~~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -c /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.h:59, from /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘UserDefinedConstraintComponent* ListOfUserDefinedConstraintComponents::createUserDefinedConstraintComponent()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:274:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 274 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraintComponents::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:384:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 384 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -c /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.h:58, from /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘UserDefinedConstraint* ListOfUserDefinedConstraints::createUserDefinedConstraint()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:264:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 264 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraints::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:409:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 409 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /<>/src/sbml/packages/fbc/sbml/Objective.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/Objective.h:139, from /<>/src/sbml/packages/fbc/sbml/Objective.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘FluxObjective* Objective::createFluxObjective()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/Objective.cpp:477:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 477 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘Objective* ListOfObjectives::createObjective()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/Objective.cpp:1443:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1443 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘virtual SBase* ListOfObjectives::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/Objective.cpp:1562:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1562 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -c /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:58, from /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp: In member function ‘UserDefinedConstraintComponent* UserDefinedConstraint::createUserDefinedConstraintComponent()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:556:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 556 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp: In member function ‘virtual void UserDefinedConstraint::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:1369:8: warning: unused variable ‘assigned’ [-Wunused-variable] 1369 | bool assigned = false; | ^~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -c /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:84, from /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp: In member function ‘virtual void UserDefinedConstraintComponent::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp:1135:8: warning: unused variable ‘assigned’ [-Wunused-variable] 1135 | bool assigned = false; | ^~~~~~~~ /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp: In member function ‘void UserDefinedConstraintComponent::readL3V1V3Attributes(const XMLAttributes&)’: /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp:1221:16: warning: variable ‘numErrs’ set but not used [-Wunused-but-set-variable] 1221 | unsigned int numErrs; | ^~~~~~~ /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp: In member function ‘virtual void UserDefinedConstraintComponent::writeAttributes(XMLOutputStream&) const’: /<>/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp:1451:16: warning: unused variable ‘version’ [-Wunused-variable] 1451 | unsigned int version = getVersion(); | ^~~~~~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /<>/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/packages/fbc/util/CobraToFbcConverter.h:61, from /<>/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /<>/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/packages/fbc/util/FbcToCobraConverter.h:61, from /<>/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /<>/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/packages/fbc/util/FbcV1ToV2Converter.h:60, from /<>/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp:36: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /<>/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/packages/fbc/util/FbcV2ToV1Converter.h:58, from /<>/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp:36: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /<>/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:39, from /<>/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /<>/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:39, from /<>/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /<>/src/sbml/packages/fbc/validator/FbcValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/fbc/validator/FbcValidator.cpp:41: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -c /<>/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -c /<>/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.h:48, from /<>/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /<>/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:48, from /<>/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /<>/src/sbml/packages/groups/extension/GroupsExtension.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegister.h:64, from /<>/src/sbml/packages/groups/extension/GroupsExtension.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /<>/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBasePlugin.h:70, from /<>/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /<>/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73: /<>/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function ‘Group* GroupsModelPlugin::createGroup()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:238:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 238 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /<>/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBMLDocumentPlugin.h:73, from /<>/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.h:62, from /<>/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /<>/src/sbml/packages/groups/sbml/Group.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /<>/src/sbml/packages/groups/sbml/Group.h:169, from /<>/src/sbml/packages/groups/sbml/Group.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/groups/sbml/Group.cpp: In member function ‘Member* Group::createMember()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/sbml/Group.cpp:454:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 454 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /<>/src/sbml/packages/groups/sbml/ListOfGroups.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /<>/src/sbml/packages/groups/sbml/ListOfGroups.h:77, from /<>/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘Group* ListOfGroups::createGroup()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/sbml/ListOfGroups.cpp:252:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 252 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘virtual SBase* ListOfGroups::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/sbml/ListOfGroups.cpp:312:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 312 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /<>/src/sbml/packages/groups/sbml/ListOfMembers.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /<>/src/sbml/packages/groups/sbml/ListOfMembers.h:105, from /<>/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘Member* ListOfMembers::createMember()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/sbml/ListOfMembers.cpp:352:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 352 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘virtual SBase* ListOfMembers::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/groups/sbml/ListOfMembers.cpp:463:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 463 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -c /<>/src/sbml/packages/groups/sbml/Member.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /<>/src/sbml/packages/groups/sbml/Member.h:78, from /<>/src/sbml/packages/groups/sbml/Member.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /<>/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/groups/validator/constraints/GroupsConsistencyConstraints.cpp:47, from /<>/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp:53: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /<>/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/groups/validator/constraints/GroupsIdentifierConsistencyConstraints.cpp:47, from /<>/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp:53: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /<>/src/sbml/packages/groups/validator/GroupsValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/groups/validator/GroupsValidator.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /<>/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -c /<>/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.h:55, from /<>/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /<>/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -c /<>/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.h:50, from /<>/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /<>/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegister.h:64, from /<>/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -c /<>/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBMLDocumentPlugin.h:73, from /<>/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.h:57, from /<>/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /<>/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp:47, from /<>/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp:53: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -c /<>/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp:47, from /<>/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp:53: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -c /<>/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -c /<>/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -c /<>/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -c /<>/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp:47: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -c /<>/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp:47: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /<>/src/sbml/packages/layout/extension/LayoutExtension.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegister.h:64, from /<>/src/sbml/packages/layout/extension/LayoutExtension.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /<>/src/sbml/packages/layout/extension/LayoutExtension.cpp:50: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:57, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62: /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function ‘Layout* LayoutModelPlugin::createLayout()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:485:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 485 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /<>/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBMLDocumentPlugin.h:73, from /<>/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:67, from /<>/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /<>/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:53, from /<>/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:59: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -c /<>/src/sbml/packages/layout/sbml/BoundingBox.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /<>/src/sbml/packages/layout/sbml/BoundingBox.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:41: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69, from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:42: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /<>/src/sbml/packages/layout/sbml/CubicBezier.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/LineSegment.h:63, from /<>/src/sbml/packages/layout/sbml/CubicBezier.h:64, from /<>/src/sbml/packages/layout/sbml/CubicBezier.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /<>/src/sbml/packages/layout/sbml/Curve.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/LineSegment.h:63, from /<>/src/sbml/packages/layout/sbml/Curve.h:78, from /<>/src/sbml/packages/layout/sbml/Curve.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Curve.cpp:44: /<>/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘LineSegment* Curve::createLineSegment()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Curve.cpp:366:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 366 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘CubicBezier* Curve::createCubicBezier()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Curve.cpp:381:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 381 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Curve.cpp:649:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 649 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /<>/src/sbml/packages/layout/sbml/Dimensions.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Dimensions.h:65, from /<>/src/sbml/packages/layout/sbml/Dimensions.cpp:41: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /<>/src/sbml/packages/layout/sbml/GeneralGlyph.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/LineSegment.h:63, from /<>/src/sbml/packages/layout/sbml/Curve.h:78, from /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:64, from /<>/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:63, from /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:65: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:43: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:44: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:45: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:46: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘ReferenceGlyph* GeneralGlyph::createReferenceGlyph()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:656:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 656 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1183:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1183 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /<>/src/sbml/packages/layout/sbml/GraphicalObject.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.cpp:50: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Curve.h:78, from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /<>/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /<>/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /<>/src/sbml/packages/layout/sbml/Layout.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Dimensions.h:65, from /<>/src/sbml/packages/layout/sbml/Layout.h:67, from /<>/src/sbml/packages/layout/sbml/Layout.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:65, from /<>/src/sbml/packages/layout/sbml/Layout.cpp:46: /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘CompartmentGlyph* Layout::createCompartmentGlyph()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:1387:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1387 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘SpeciesGlyph* Layout::createSpeciesGlyph()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:1403:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1403 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘ReactionGlyph* Layout::createReactionGlyph()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:1419:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1419 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GeneralGlyph* Layout::createGeneralGlyph()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:1434:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1434 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘TextGlyph* Layout::createTextGlyph()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:1450:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1450 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GraphicalObject* Layout::createAdditionalGraphicalObject()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:1467:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1467 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfLayouts::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:2048:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2048 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:2220:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2220 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:2372:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2372 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:2521:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2521 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/Layout.cpp:2670:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2670 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /<>/src/sbml/packages/layout/sbml/LineSegment.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/LineSegment.h:63, from /<>/src/sbml/packages/layout/sbml/LineSegment.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -c /<>/src/sbml/packages/layout/sbml/Point.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/Point.cpp:41: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /<>/src/sbml/packages/layout/sbml/ReactionGlyph.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/LineSegment.h:63, from /<>/src/sbml/packages/layout/sbml/Curve.h:78, from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:70, from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:63, from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:45: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:503:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 503 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:980:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 980 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:63, from /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp:40: /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:58, from /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp:40: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:63, from /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:40: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -c /<>/src/sbml/packages/layout/sbml/TextGlyph.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /<>/src/sbml/packages/layout/sbml/TextGlyph.h:59, from /<>/src/sbml/packages/layout/sbml/TextGlyph.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/sbml/TextGlyph.cpp:42: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /<>/src/sbml/packages/layout/util/LayoutAnnotation.cpp In file included from /<>/src/sbml/packages/layout/util/LayoutAnnotation.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.cpp:45: /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.cpp:54: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -c /<>/src/sbml/packages/layout/util/LayoutUtilities.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/layout/util/LayoutUtilities.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /<>/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:46, from /<>/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /<>/src/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:49: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Curve.h:78, from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /<>/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /<>/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -c /<>/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:46, from /<>/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /<>/src/sbml/packages/layout/validator/LayoutValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/layout/validator/LayoutValidator.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /<>/src/sbml/packages/layout/validator/LayoutValidator.cpp:44: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Curve.h:78, from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /<>/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /<>/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /<>/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:55, from /<>/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /<>/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:45: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:65, from /<>/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:47: /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /<>/src/sbml/packages/qual/extension/QualExtension.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegister.h:64, from /<>/src/sbml/packages/qual/extension/QualExtension.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /<>/src/sbml/packages/qual/extension/QualModelPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBasePlugin.h:70, from /<>/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /<>/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/extension/SBasePlugin.h:73: /<>/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualModelPlugin.cpp:839:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 839 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘Transition* QualModelPlugin::createTransition()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1021:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1021 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /<>/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBMLDocumentPlugin.h:73, from /<>/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:67, from /<>/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:48: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /<>/src/sbml/packages/qual/sbml/DefaultTerm.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/qual/extension/QualExtension.h:67, from /<>/src/sbml/packages/qual/sbml/DefaultTerm.h:68, from /<>/src/sbml/packages/qual/sbml/DefaultTerm.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /<>/src/sbml/packages/qual/sbml/FunctionTerm.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/qual/extension/QualExtension.h:67, from /<>/src/sbml/packages/qual/sbml/FunctionTerm.h:77, from /<>/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘DefaultTerm* ListOfFunctionTerms::createDefaultTerm()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1072:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1072 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1129:3: note: in expansion of macro ‘QUAL_CREATE_NS’ 1129 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /<>/src/sbml/packages/qual/sbml/Input.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/qual/extension/QualExtension.h:67, from /<>/src/sbml/packages/qual/sbml/Input.h:107, from /<>/src/sbml/packages/qual/sbml/Input.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual SBase* ListOfInputs::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /<>/src/sbml/packages/qual/sbml/Output.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/qual/extension/QualExtension.h:67, from /<>/src/sbml/packages/qual/sbml/Output.h:98, from /<>/src/sbml/packages/qual/sbml/Output.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual SBase* ListOfOutputs::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /<>/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/qual/extension/QualExtension.h:67, from /<>/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89, from /<>/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /<>/src/sbml/packages/qual/sbml/Transition.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/qual/extension/QualExtension.h:67, from /<>/src/sbml/packages/qual/sbml/Transition.h:91, from /<>/src/sbml/packages/qual/sbml/Transition.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Input* Transition::createInput()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/Transition.cpp:460:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 460 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Output* Transition::createOutput()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/Transition.cpp:644:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 644 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘FunctionTerm* Transition::createFunctionTerm()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/Transition.cpp:802:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 802 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual SBase* ListOfTransitions::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/qual/sbml/Transition.cpp:1771:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1771 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /<>/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:46, from /<>/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp:52: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /<>/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:46, from /<>/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:52: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /<>/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:46, from /<>/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:52: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /<>/src/sbml/packages/qual/validator/QualValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/qual/validator/QualValidator.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /<>/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -c /<>/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:55, from /<>/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -c /<>/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:55, from /<>/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -c /<>/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /<>/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /<>/src/sbml/packages/render/extension/RenderExtension.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegister.h:64, from /<>/src/sbml/packages/render/extension/RenderExtension.cpp:36: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /<>/src/sbml/packages/render/extension/RenderExtension.cpp:42: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /<>/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.h:49, from /<>/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /<>/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /<>/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /<>/src/sbml/packages/render/sbml/Polygon.h:75, from /<>/src/sbml/packages/render/common/RenderExtensionTypes.h:75, from /<>/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:39: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:43: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function ‘LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /<>/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /<>/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:39: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Curve.h:78, from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /<>/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /<>/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function ‘GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /<>/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBMLDocumentPlugin.h:73, from /<>/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.h:67, from /<>/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /<>/src/sbml/packages/render/sbml/ColorDefinition.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/render/sbml/ColorDefinition.cpp:53: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /<>/src/sbml/packages/render/sbml/DefaultValues.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GradientBase.h:102, from /<>/src/sbml/packages/render/sbml/DefaultValues.h:71, from /<>/src/sbml/packages/render/sbml/DefaultValues.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /<>/src/sbml/packages/render/sbml/Ellipse.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /<>/src/sbml/packages/render/sbml/Ellipse.h:71, from /<>/src/sbml/packages/render/sbml/Ellipse.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/Ellipse.cpp:65: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /<>/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /<>/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /<>/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function ‘GlobalStyle* GlobalRenderInformation::createGlobalStyle()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:369:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /<>/src/sbml/packages/render/sbml/GlobalStyle.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/Style.h:73, from /<>/src/sbml/packages/render/sbml/GlobalStyle.h:74, from /<>/src/sbml/packages/render/sbml/GlobalStyle.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/GlobalStyle.cpp:46: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /<>/src/sbml/packages/render/sbml/GradientBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GradientBase.h:102, from /<>/src/sbml/packages/render/sbml/GradientBase.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/GradientBase.cpp: In member function ‘GradientStop* GradientBase::createGradientStop()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/GradientBase.cpp:569:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 569 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /<>/src/sbml/packages/render/sbml/GradientStop.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GradientStop.h:84, from /<>/src/sbml/packages/render/sbml/GradientStop.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/GradientStop.cpp:56: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /<>/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /<>/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -c /<>/src/sbml/packages/render/sbml/Image.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/Transformation.h:68, from /<>/src/sbml/packages/render/sbml/Transformation2D.h:73, from /<>/src/sbml/packages/render/sbml/Image.h:76, from /<>/src/sbml/packages/render/sbml/Image.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/Image.cpp:44: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /<>/src/sbml/packages/render/sbml/LineEnding.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /<>/src/sbml/packages/render/sbml/LineEnding.h:77, from /<>/src/sbml/packages/render/sbml/LineEnding.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘RenderGroup* LineEnding::createGroup()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/LineEnding.cpp:540:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 540 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘BoundingBox* LineEnding::createBoundingBox()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/LineEnding.cpp:566:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 566 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual SBase* LineEnding::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/LineEnding.cpp:1320:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1320 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/LineEnding.cpp:1322:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1322 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual void LineEnding::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /<>/src/sbml/packages/render/sbml/LineEnding.cpp:1494:47: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 1494 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /<>/src/sbml/packages/render/sbml/LineEnding.cpp:1398:16: note: ‘numErrs’ was declared here 1398 | unsigned int numErrs; | ^~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /<>/src/sbml/packages/render/sbml/LinearGradient.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GradientBase.h:102, from /<>/src/sbml/packages/render/sbml/LinearGradient.h:78, from /<>/src/sbml/packages/render/sbml/LinearGradient.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/LinearGradient.cpp:52: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /<>/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66, from /<>/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘ColorDefinition* ListOfColorDefinitions::createColorDefinition()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:371:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 371 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /<>/src/sbml/packages/render/sbml/ListOfCurveElements.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/ListOfCurveElements.h:73, from /<>/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /<>/src/sbml/packages/render/sbml/ListOfCurveElements.h:75: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:50: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘RenderCubicBezier* ListOfCurveElements::createCubicBezier()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:328:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 328 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:417:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 417 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/ListOfDrawables.h:75, from /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Image* ListOfDrawables::createImage()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp:265:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 265 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Ellipse* ListOfDrawables::createEllipse()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp:293:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 293 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Rectangle* ListOfDrawables::createRectangle()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp:321:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 321 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Polygon* ListOfDrawables::createPolygon()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp:349:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 349 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderGroup* ListOfDrawables::createGroup()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp:377:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 377 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘LineEnding* ListOfDrawables::createLineEnding()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp:405:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 405 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Text* ListOfDrawables::createText()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp:433:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 433 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderCurve* ListOfDrawables::createCurve()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp:461:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 461 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘virtual SBase* ListOfDrawables::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfDrawables.cpp:521:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 521 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70, from /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:609:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 609 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:844:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 844 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual void ListOfGlobalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:942:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 942 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:900:16: note: ‘numErrs’ was declared here 900 | unsigned int numErrs; | ^~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /<>/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70, from /<>/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘GlobalStyle* ListOfGlobalStyles::createGlobalStyle()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:287:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 287 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:352:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 352 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /<>/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70, from /<>/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘LinearGradient* ListOfGradientDefinitions::createLinearGradient()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:310:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘RadialGradient* ListOfGradientDefinitions::createRadialGradient()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:339:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:399:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 399 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /<>/src/sbml/packages/render/sbml/ListOfGradientStops.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/ListOfGradientStops.h:84, from /<>/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:48: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘GradientStop* ListOfGradientStops::createGradientStop()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:308:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 308 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /<>/src/sbml/packages/render/sbml/ListOfLineEndings.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/ListOfLineEndings.h:72, from /<>/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘LineEnding* ListOfLineEndings::createLineEnding()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:373:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72, from /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘DefaultValues* ListOfLocalRenderInformation::createDefaultValues()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:590:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 590 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:794:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 794 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual void ListOfLocalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:892:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 892 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /<>/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:850:16: note: ‘numErrs’ was declared here 850 | unsigned int numErrs; | ^~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /<>/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71, from /<>/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘LocalStyle* ListOfLocalStyles::createLocalStyle()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:303:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /<>/src/sbml/packages/render/sbml/LocalRenderInformation.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /<>/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /<>/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:56: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createLocalStyle()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:343:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 343 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createStyle(const std::string&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:367:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /<>/src/sbml/packages/render/sbml/LocalStyle.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/Style.h:73, from /<>/src/sbml/packages/render/sbml/LocalStyle.h:65, from /<>/src/sbml/packages/render/sbml/LocalStyle.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/render/sbml/LocalStyle.cpp:46: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/LocalStyle.cpp:59: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /<>/src/sbml/packages/render/sbml/Polygon.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /<>/src/sbml/packages/render/sbml/Polygon.h:73, from /<>/src/sbml/packages/render/sbml/Polygon.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /<>/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /<>/src/sbml/packages/render/sbml/Polygon.h:75: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/Polygon.cpp:44: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/render/sbml/Polygon.cpp: In constructor ‘Polygon::Polygon(const XMLNode&, unsigned int)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderPoint* Polygon::createPoint()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/Polygon.cpp:425:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 425 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderCubicBezier* Polygon::createCubicBezier()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/Polygon.cpp:453:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 453 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /<>/src/sbml/packages/render/sbml/RadialGradient.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GradientBase.h:102, from /<>/src/sbml/packages/render/sbml/RadialGradient.h:80, from /<>/src/sbml/packages/render/sbml/RadialGradient.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/RadialGradient.cpp:52: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /<>/src/sbml/packages/render/sbml/Rectangle.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /<>/src/sbml/packages/render/sbml/Rectangle.h:69, from /<>/src/sbml/packages/render/sbml/Rectangle.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/Rectangle.cpp:44: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /<>/src/sbml/packages/render/sbml/RelAbsVector.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/RelAbsVector.h:73, from /<>/src/sbml/packages/render/sbml/RelAbsVector.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /<>/src/sbml/packages/render/sbml/RenderCubicBezier.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Point.h:60, from /<>/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /<>/src/sbml/packages/render/sbml/RenderCubicBezier.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/RenderCubicBezier.cpp:52: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /<>/src/sbml/packages/render/sbml/RenderCurve.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /<>/src/sbml/packages/layout/sbml/Dimensions.h:65, from /<>/src/sbml/packages/layout/sbml/Layout.h:67, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderPoint* RenderCurve::createPoint()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderCurve.cpp:477:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 477 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderCubicBezier* RenderCurve::createCubicBezier()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderCurve.cpp:505:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 505 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /<>/src/sbml/packages/render/sbml/RenderGroup.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /<>/src/sbml/packages/render/sbml/RenderGroup.h:76, from /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /<>/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /<>/src/sbml/packages/render/sbml/Polygon.h:75, from /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:56: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:65: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Image* RenderGroup::createImage()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:1118:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1118 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Ellipse* RenderGroup::createEllipse()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:1146:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1146 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Rectangle* RenderGroup::createRectangle()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:1174:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1174 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Polygon* RenderGroup::createPolygon()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:1202:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1202 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderGroup* RenderGroup::createGroup()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:1230:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1230 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘LineEnding* RenderGroup::createLineEnding()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:1258:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1258 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Text* RenderGroup::createText()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:1286:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1286 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderCurve* RenderGroup::createCurve()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:1314:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1314 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘void RenderGroup::importOldCurve(const XMLNode&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderGroup.cpp:2631:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 2631 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /<>/src/sbml/packages/render/sbml/RenderInformationBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /<>/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘ColorDefinition* RenderInformationBase::createColorDefinition()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderInformationBase.cpp:738:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 738 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LinearGradient* RenderInformationBase::createLinearGradientDefinition()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderInformationBase.cpp:900:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 900 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘RadialGradient* RenderInformationBase::createRadialGradientDefinition()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderInformationBase.cpp:928:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 928 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LineEnding* RenderInformationBase::createLineEnding()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1090:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1090 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /<>/src/sbml/packages/render/sbml/RenderPoint.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/RenderPoint.h:72, from /<>/src/sbml/packages/render/sbml/RenderPoint.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /<>/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /<>/src/sbml/packages/render/sbml/RenderPoint.cpp:45: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/RenderPoint.cpp:61: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -c /<>/src/sbml/packages/render/sbml/Style.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/Style.h:73, from /<>/src/sbml/packages/render/sbml/Style.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/Style.cpp:44: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/render/sbml/Style.cpp: In member function ‘bool Style::isSetGroup() const’: /<>/src/sbml/packages/render/sbml/Style.cpp:564:19: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 564 | return (&mGroup != NULL); | ^ /<>/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /<>/src/sbml/packages/render/sbml/Style.cpp: In member function ‘RenderGroup* Style::createGroup()’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementBySId(const std::string&)’: /<>/src/sbml/packages/render/sbml/Style.cpp:1178:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1178 | if (&mGroup != NULL) | ^ /<>/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /<>/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementByMetaId(const std::string&)’: /<>/src/sbml/packages/render/sbml/Style.cpp:1210:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1210 | if (&mGroup != NULL) | ^ /<>/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /<>/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::createObject(XMLInputStream&)’: /<>/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /<>/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /<>/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o -c /<>/src/sbml/packages/render/sbml/Text.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /<>/src/sbml/packages/render/sbml/Text.h:73, from /<>/src/sbml/packages/render/sbml/Text.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /<>/src/sbml/packages/render/sbml/Text.cpp:47: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /<>/src/sbml/packages/render/sbml/Transformation.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/Transformation.h:68, from /<>/src/sbml/packages/render/sbml/Transformation.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /<>/src/sbml/packages/render/sbml/Transformation2D.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/sbml/Transformation.h:68, from /<>/src/sbml/packages/render/sbml/Transformation2D.h:73, from /<>/src/sbml/packages/render/sbml/Transformation2D.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /<>/src/sbml/packages/render/util/RenderLayoutConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/packages/render/util/RenderLayoutConverter.h:62, from /<>/src/sbml/packages/render/util/RenderLayoutConverter.cpp:36: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /<>/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /<>/src/sbml/packages/render/sbml/Polygon.h:75, from /<>/src/sbml/packages/render/common/RenderExtensionTypes.h:75, from /<>/src/sbml/packages/render/util/RenderLayoutConverter.cpp:44: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /<>/src/sbml/packages/render/util/RenderLayoutConverter.cpp:45: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Curve.h:78, from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /<>/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /<>/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o -c /<>/src/sbml/packages/render/util/RenderUtilities.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/packages/render/extension/RenderExtension.h:60, from /<>/src/sbml/packages/render/common/RenderExtensionTypes.h:50, from /<>/src/sbml/packages/render/util/RenderUtilities.h:40, from /<>/src/sbml/packages/render/util/RenderUtilities.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /<>/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /<>/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /<>/src/sbml/packages/render/sbml/Polygon.h:75, from /<>/src/sbml/packages/render/common/RenderExtensionTypes.h:75: /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:68, from /<>/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /<>/src/sbml/packages/render/util/RenderUtilities.cpp:42: /<>/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:69: /<>/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /<>/src/sbml/packages/layout/sbml/Layout.h:70: /<>/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Layout.h:71: /<>/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/sbml/Curve.h:78, from /<>/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /<>/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /<>/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /<>/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /<>/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /<>/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /<>/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o -c /<>/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/render/validator/constraints/RenderConsistencyConstraints.cpp:43, from /<>/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o -c /<>/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/render/validator/constraints/RenderIdentifierConsistencyConstraints.cpp:43, from /<>/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o -c /<>/src/sbml/packages/render/validator/RenderValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/packages/render/validator/RenderValidator.cpp:39: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o -c /<>/src/sbml/annotation/CVTerm.cpp In file included from /<>/src/sbml/annotation/CVTerm.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/annotation/CVTerm.cpp:47: /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /<>/src/sbml/annotation/Date.cpp /<>/src/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’: /<>/src/sbml/annotation/Date.cpp:463:29: warning: ‘%u’ directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /<>/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4109, from /usr/include/c++/13/string:54, from /<>/src/sbml/xml/XMLAttributes.h:243, from /<>/src/sbml/xml/XMLToken.h:126, from /<>/src/sbml/xml/XMLNode.h:160, from /<>/src/sbml/annotation/Date.h:193, from /<>/src/sbml/annotation/Date.cpp:39: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void Date::parseDateNumbersToString()’ at /<>/src/sbml/annotation/Date.cpp:463:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 6 and 23 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /<>/src/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’: /<>/src/sbml/annotation/Date.cpp:469:28: warning: ‘T’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void Date::parseDateNumbersToString()’ at /<>/src/sbml/annotation/Date.cpp:469:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /<>/src/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’: /<>/src/sbml/annotation/Date.cpp:475:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void Date::parseDateNumbersToString()’ at /<>/src/sbml/annotation/Date.cpp:475:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /<>/src/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’: /<>/src/sbml/annotation/Date.cpp:481:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void Date::parseDateNumbersToString()’ at /<>/src/sbml/annotation/Date.cpp:481:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /<>/src/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’: /<>/src/sbml/annotation/Date.cpp:487:28: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void Date::parseDateNumbersToString()’ at /<>/src/sbml/annotation/Date.cpp:487:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /<>/src/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’: /<>/src/sbml/annotation/Date.cpp:506:30: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void Date::parseDateNumbersToString()’ at /<>/src/sbml/annotation/Date.cpp:506:15: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /<>/src/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’: /<>/src/sbml/annotation/Date.cpp:512:30: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void Date::parseDateNumbersToString()’ at /<>/src/sbml/annotation/Date.cpp:512:15: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator 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-I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o -c /<>/src/sbml/annotation/ModelCreator.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o -c /<>/src/sbml/annotation/ModelHistory.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o -c /<>/src/sbml/annotation/RDFAnnotationParser.cpp In file included from /<>/src/sbml/annotation/RDFAnnotationParser.cpp:40: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/annotation/RDFAnnotationParser.cpp:43: /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/common/libsbml-version.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common 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-I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/common/libsbml-version.cpp.o -MF CMakeFiles/sbml.dir/sbml/common/libsbml-version.cpp.o.d -o CMakeFiles/sbml.dir/sbml/common/libsbml-version.cpp.o -c /<>/src/sbml/common/libsbml-version.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/common/operationReturnValues.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml 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-I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/common/operationReturnValues.cpp.o -MF CMakeFiles/sbml.dir/sbml/common/operationReturnValues.cpp.o.d -o CMakeFiles/sbml.dir/sbml/common/operationReturnValues.cpp.o -c /<>/src/sbml/common/operationReturnValues.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/ConversionOption.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/ConversionOption.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/ConversionOption.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/ConversionOption.cpp.o -c /<>/src/sbml/conversion/ConversionOption.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o -c /<>/src/sbml/conversion/ConversionProperties.cpp [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/ExpressionAnalyser.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/ExpressionAnalyser.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/ExpressionAnalyser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/ExpressionAnalyser.cpp.o -c /<>/src/sbml/conversion/ExpressionAnalyser.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/conversion/ExpressionAnalyser.h:58, from /<>/src/sbml/conversion/ExpressionAnalyser.cpp:37: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/conversion/ExpressionAnalyser.cpp: In member function ‘void ExpressionAnalyser::detectHiddenSpecies(List*)’: /<>/src/sbml/conversion/ExpressionAnalyser.cpp:414:14: warning: unused variable ‘currentNode’ [-Wunused-variable] 414 | ASTNode* currentNode = exp->current; | ^~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o -c /<>/src/sbml/conversion/RegisterConverters.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLFunctionDefinitionConverter.h:85, from /<>/src/sbml/conversion/RegisterConverters.cpp:48: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o -c /<>/src/sbml/conversion/SBMLConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLConverter.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -c /<>/src/sbml/conversion/SBMLConverterRegistry.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLConverterRegistry.h:70, from /<>/src/sbml/conversion/SBMLConverterRegistry.cpp:51: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -c /<>/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLFunctionDefinitionConverter.h:85, from /<>/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /<>/src/sbml/conversion/SBMLIdConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLIdConverter.h:87, from /<>/src/sbml/conversion/SBMLIdConverter.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /<>/src/sbml/conversion/SBMLInferUnitsConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLInferUnitsConverter.h:65, from /<>/src/sbml/conversion/SBMLInferUnitsConverter.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -c /<>/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLInitialAssignmentConverter.h:98, from /<>/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /<>/src/sbml/conversion/SBMLLevel1Version1Converter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLLevel1Version1Converter.h:92, from /<>/src/sbml/conversion/SBMLLevel1Version1Converter.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -c /<>/src/sbml/conversion/SBMLLevelVersionConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLLevelVersionConverter.h:94, from /<>/src/sbml/conversion/SBMLLevelVersionConverter.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -c /<>/src/sbml/conversion/SBMLLocalParameterConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLLocalParameterConverter.h:74, from /<>/src/sbml/conversion/SBMLLocalParameterConverter.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /<>/src/sbml/conversion/SBMLRateOfConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLRateOfConverter.h:71, from /<>/src/sbml/conversion/SBMLRateOfConverter.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o -c /<>/src/sbml/conversion/SBMLRateRuleConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLRateRuleConverter.h:62, from /<>/src/sbml/conversion/SBMLRateRuleConverter.cpp:36: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -c /<>/src/sbml/conversion/SBMLReactionConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLReactionConverter.h:68, from /<>/src/sbml/conversion/SBMLReactionConverter.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /<>/src/sbml/conversion/SBMLRuleConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLRuleConverter.h:97, from /<>/src/sbml/conversion/SBMLRuleConverter.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /<>/src/sbml/conversion/SBMLStripPackageConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLStripPackageConverter.h:81, from /<>/src/sbml/conversion/SBMLStripPackageConverter.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /<>/src/sbml/conversion/SBMLUnitsConverter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/conversion/SBMLConverter.h:67, from /<>/src/sbml/conversion/SBMLUnitsConverter.h:80, from /<>/src/sbml/conversion/SBMLUnitsConverter.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -c /<>/src/sbml/extension/ASTBasePlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/extension/ASTBasePlugin.cpp:50: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/extension/ASTBasePlugin.h: In copy constructor ‘ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)’: /<>/src/sbml/extension/ASTBasePlugin.h:487:24: warning: ‘ASTBasePlugin::mExtendedMathType’ will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /<>/src/sbml/extension/ASTBasePlugin.h:486:34: warning: ‘std::vector ASTBasePlugin::mPkgASTNodeValues’ [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /<>/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -c /<>/src/sbml/extension/ISBMLExtensionNamespaces.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegistry.h:59, from /<>/src/sbml/extension/ISBMLExtensionNamespaces.cpp:51: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /<>/src/sbml/extension/SBMLDocumentPlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBMLDocumentPlugin.h:73, from /<>/src/sbml/extension/SBMLDocumentPlugin.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -c /<>/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBMLDocumentPlugin.h:73, from /<>/src/sbml/extension/SBMLDocumentPluginNotRequired.h:68, from /<>/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -c /<>/src/sbml/extension/SBMLExtension.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtension.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -c /<>/src/sbml/extension/SBMLExtensionException.cpp [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /<>/src/sbml/extension/SBMLExtensionNamespaces.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegistry.h:59, from /<>/src/sbml/extension/SBMLExtensionNamespaces.cpp:50: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /<>/src/sbml/extension/SBMLExtensionRegistry.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegistry.h:59, from /<>/src/sbml/extension/SBMLExtensionRegistry.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’: /<>/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 368 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /<>/src/sbml/extension/SBaseExtensionPoint.cpp [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o -c /<>/src/sbml/extension/SBasePlugin.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBasePlugin.h:70, from /<>/src/sbml/extension/SBasePlugin.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /<>/src/sbml/extension/SBasePluginCreatorBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBasePluginCreatorBase.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -c /<>/src/sbml/AlgebraicRule.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/AlgebraicRule.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -c /<>/src/sbml/AssignmentRule.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/AssignmentRule.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -MF CMakeFiles/sbml.dir/sbml/Compartment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -c /<>/src/sbml/Compartment.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/Compartment.cpp:50: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -MF CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -c /<>/src/sbml/CompartmentType.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/CompartmentType.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/Constraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -c /<>/src/sbml/Constraint.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/Constraint.cpp:48: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o -MF CMakeFiles/sbml.dir/sbml/Delay.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Delay.cpp.o -c /<>/src/sbml/Delay.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/Delay.cpp:47: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Event.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Event.cpp.o -MF CMakeFiles/sbml.dir/sbml/Event.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Event.cpp.o -c /<>/src/sbml/Event.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaParser.h:49, from /<>/src/sbml/Event.cpp:47: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -MF CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -c /<>/src/sbml/EventAssignment.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaParser.h:49, from /<>/src/sbml/EventAssignment.cpp:47: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o -MF CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o.d -o CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o -c /<>/src/sbml/ExpectedAttributes.cpp [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -c /<>/src/sbml/FunctionDefinition.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaParser.h:49, from /<>/src/sbml/FunctionDefinition.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -MF CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -c /<>/src/sbml/InitialAssignment.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/InitialAssignment.cpp:48: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -MF CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o.d -o CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -c /<>/src/sbml/KineticLaw.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/KineticLaw.cpp:47: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -MF CMakeFiles/sbml.dir/sbml/ListOf.cpp.o.d -o CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -c /<>/src/sbml/ListOf.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/extension/SBasePlugin.h:70, from /<>/src/sbml/ListOf.cpp:50: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -MF CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -c /<>/src/sbml/LocalParameter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/LocalParameter.cpp:51: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Model.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Model.cpp.o -MF CMakeFiles/sbml.dir/sbml/Model.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Model.cpp.o -c /<>/src/sbml/Model.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/Model.cpp:48: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/Model.cpp: In member function ‘void Model::createConstraintUnitsData(UnitFormulaFormatter*)’: /<>/src/sbml/Model.cpp:6447:32: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 4 [-Wformat-overflow=] 6447 | sprintf(newId, "constraint_%u", n); | ^~ /<>/src/sbml/Model.cpp:6447:20: note: directive argument in the range [0, 4294967294] 6447 | sprintf(newId, "constraint_%u", n); | ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4109, from /usr/include/c++/13/string:54, from /<>/src/sbml/xml/XMLAttributes.h:243, from /<>/src/sbml/xml/XMLToken.h:126, from /<>/src/sbml/xml/XMLNode.h:160, from /<>/src/sbml/Model.cpp:42: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void Model::createConstraintUnitsData(UnitFormulaFormatter*)’ at /<>/src/sbml/Model.cpp:6447:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 13 and 22 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /<>/src/sbml/Model.cpp: In member function ‘void Model::createEventUnitsData(UnitFormulaFormatter*)’: /<>/src/sbml/Model.cpp:6650:27: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 6650 | sprintf(newId, "event_%u", countEvents); | ^~ /<>/src/sbml/Model.cpp:6650:20: note: directive argument in the range [0, 4294967294] 6650 | sprintf(newId, "event_%u", countEvents); | ^~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void Model::createEventUnitsData(UnitFormulaFormatter*)’ at /<>/src/sbml/Model.cpp:6650:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 8 and 17 bytes into a destination of size 12 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -c /<>/src/sbml/ModifierSpeciesReference.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaParser.h:49, from /<>/src/sbml/ModifierSpeciesReference.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -MF CMakeFiles/sbml.dir/sbml/Parameter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -c /<>/src/sbml/Parameter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/Parameter.cpp:51: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o -MF CMakeFiles/sbml.dir/sbml/Priority.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Priority.cpp.o -c /<>/src/sbml/Priority.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/Priority.cpp:47: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/RateRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -c /<>/src/sbml/RateRule.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/RateRule.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -MF CMakeFiles/sbml.dir/sbml/Reaction.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -c /<>/src/sbml/Reaction.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/Reaction.cpp:53: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o -MF CMakeFiles/sbml.dir/sbml/Rule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Rule.cpp.o -c /<>/src/sbml/Rule.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/Rule.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -c /<>/src/sbml/SBMLConstructorException.cpp [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -c /<>/src/sbml/SBMLConvert.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/SBMLConvert.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -c /<>/src/sbml/SBMLDocument.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/validator/SBMLValidator.h:84, from /<>/src/sbml/validator/SBMLInternalValidator.h:72, from /<>/src/sbml/SBMLDocument.cpp:53: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -c /<>/src/sbml/SBMLError.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegistry.h:59, from /<>/src/sbml/SBMLError.cpp:50: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -c /<>/src/sbml/SBMLErrorLog.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLErrorLog.cpp:50: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o -c /<>/src/sbml/SBMLNamespaces.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/extension/SBMLExtensionRegistry.h:59, from /<>/src/sbml/SBMLNamespaces.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o -c /<>/src/sbml/SBMLReader.cpp In file included from /<>/src/sbml/SBMLReader.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/SBMLReader.cpp:46: /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -c /<>/src/sbml/SBMLTransforms.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/SBMLTransforms.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o -c /<>/src/sbml/SBMLTypeCodes.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/extension/SBasePluginCreatorBase.h:57, from /<>/src/sbml/extension/SBMLExtension.h:143, from /<>/src/sbml/SBMLTypeCodes.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o -c /<>/src/sbml/SBMLVisitor.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLVisitor.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o -c /<>/src/sbml/SBMLWriter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLWriter.cpp:51: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBO.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBO.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBO.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBO.cpp.o -c /<>/src/sbml/SBO.cpp In file included from /<>/src/sbml/SBO.cpp:48: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/SBO.cpp:51: /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBase.cpp.o -c /<>/src/sbml/SBase.cpp In file included from /<>/src/sbml/SBase.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ In file included from /<>/src/sbml/SBase.cpp:58: /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const XMLNode*)’: /<>/src/sbml/SBase.cpp:1387:8: warning: variable ‘hasNestedTerms’ set but not used [-Wunused-but-set-variable] 1387 | bool hasNestedTerms = false; | ^~~~~~~~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o -c /<>/src/sbml/SimpleSpeciesReference.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaParser.h:49, from /<>/src/sbml/SimpleSpeciesReference.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Species.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Species.cpp.o -MF CMakeFiles/sbml.dir/sbml/Species.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Species.cpp.o -c /<>/src/sbml/Species.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/Species.cpp:51: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o -c /<>/src/sbml/SpeciesReference.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaParser.h:49, from /<>/src/sbml/SpeciesReference.cpp:50: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -c /<>/src/sbml/SpeciesType.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SpeciesType.cpp:50: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -MF CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o.d -o CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -c /<>/src/sbml/StoichiometryMath.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/StoichiometryMath.cpp:47: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -MF CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -c /<>/src/sbml/SyntaxChecker.cpp [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -MF CMakeFiles/sbml.dir/sbml/Trigger.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -c /<>/src/sbml/Trigger.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/Trigger.cpp:47: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o -MF CMakeFiles/sbml.dir/sbml/Unit.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Unit.cpp.o -c /<>/src/sbml/Unit.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/Unit.cpp:50: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o -c /<>/src/sbml/UnitDefinition.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/UnitDefinition.cpp:55: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 23%] Building C object src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o cd /<>/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o -MF CMakeFiles/sbml.dir/sbml/UnitKind.c.o.d -o CMakeFiles/sbml.dir/sbml/UnitKind.c.o -c /<>/src/sbml/UnitKind.c [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o -c /<>/src/sbml/math/ASTNode.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/ASTNode.cpp:50: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/math/ASTNode.cpp: In member function ‘ASTNode* ASTNode::combineNumbers(std::vector&)’: /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_PLUS’ not handled in switch [-Wswitch] 3730 | switch (mType) | ^ /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_TIMES’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_INTEGER’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_REAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_REAL_E’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_RATIONAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_NAME’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_NAME_AVOGADRO’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_NAME_TIME’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANT_E’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANT_FALSE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANT_PI’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANT_TRUE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LAMBDA’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ABS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCCOS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCCOSH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCCOT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCCOTH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCCSC’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCCSCH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCSEC’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCSECH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCSIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCSINH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCTAN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ARCTANH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_CEILING’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_COS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_COSH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_COT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_COTH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_CSC’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_CSCH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_DELAY’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_EXP’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_FACTORIAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_FLOOR’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_LN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_LOG’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_PIECEWISE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_ROOT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_SEC’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_SECH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_SIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_SINH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_TAN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_TANH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LOGICAL_AND’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LOGICAL_NOT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LOGICAL_OR’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LOGICAL_XOR’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_RELATIONAL_EQ’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_RELATIONAL_GEQ’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_RELATIONAL_GT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_RELATIONAL_LEQ’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_RELATIONAL_LT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_RELATIONAL_NEQ’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_END_OF_CORE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_MAX’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_MIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_QUOTIENT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_RATE_OF’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_FUNCTION_REM’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LOGICAL_IMPLIES’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CSYMBOL_FUNCTION’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_NORMAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_UNIFORM’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_BERNOULLI’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_BINOMIAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_CAUCHY’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_CHISQUARE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_EXPONENTIAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_GAMMA’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_LAPLACE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_LOGNORMAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_POISSON’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_DISTRIB_FUNCTION_RAYLEIGH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LINEAR_ALGEBRA_VECTOR’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LINEAR_ALGEBRA_SELECTOR’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LINEAR_ALGEBRA_MATRIX’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LINEAR_ALGEBRA_MATRIXROW’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LINEAR_ALGEBRA_DETERMINANT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LINEAR_ALGEBRA_TRANSPOSE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LINEAR_ALGEBRA_VECTOR_PRODUCT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LINEAR_ALGEBRA_SCALAR_PRODUCT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LINEAR_ALGEBRA_OUTER_PRODUCT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LOGICAL_EXISTS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_LOGICAL_FORALL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_STATISTICS_MEAN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_STATISTICS_MEDIAN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_STATISTICS_MODE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_STATISTICS_MOMENT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_STATISTICS_SDEV’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_STATISTICS_VARIANCE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_STATISTICS_MOMENTABOUT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SERIES_PRODUCT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SERIES_SUM’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SERIES_LIMIT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SERIES_TENDSTO’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_ALGEBRA_GCD’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_ALGEBRA_CONJUGATE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_ALGEBRA_ARG’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_ALGEBRA_REAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_ALGEBRA_IMAGINARY’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_ALGEBRA_LCM’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_RELATIONS_EQUIVALENT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_RELATIONS_APPROX’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_RELATIONS_FACTOROF’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CALCULUS_INT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CALCULUS_DIFF’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CALCULUS_PARTIALDIFF’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CALCULUS_LOWLIMIT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CALCULUS_UPLIMIT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CALCULUS_DIVERGENCE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CALCULUS_GRAD’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CALCULUS_CURL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CALCULUS_LAPLACIAN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_SET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_LIST’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_UNION’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_INTERSECT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_IN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_NOTIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_SUBSET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_PRSUBSET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_NOTSUBSET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_NOTPRSUBSET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_SETDIFF’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_CARD’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_SET_THEORY_CARTESIANPRODUCT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANT_IMAGINARYI’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANTS_INTEGERS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANTS_REALS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANTS_RATIONALS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANTS_NATURALNUMBERS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANTS_COMPLEXES’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANTS_PRIMES’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANTS_EMPTYSET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_CONSTANTS_EULERGAMMA’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_BASIC_CONTENT_INTERVAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_BASIC_CONTENT_INVERSE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_BASIC_CONTENT_CONDITION’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_BASIC_CONTENT_DECLARE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_BASIC_CONTENT_COMPOSE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_BASIC_CONTENT_IDENT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_BASIC_CONTENT_DOMAIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_BASIC_CONTENT_CODOMAIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_BASIC_CONTENT_IMAGE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_BASIC_CONTENT_DOMAINOFAPPLICATION’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3730:12: warning: enumeration value ‘AST_UNKNOWN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_MINUS’ not handled in switch [-Wswitch] 3749 | switch (mType) | ^ /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DIVIDE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_POWER’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_INTEGER’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_REAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_REAL_E’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_RATIONAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_NAME’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_NAME_AVOGADRO’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_NAME_TIME’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANT_E’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANT_FALSE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANT_PI’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANT_TRUE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LAMBDA’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ABS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCCOS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCCOSH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCCOT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCCOTH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCCSC’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCCSCH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCSEC’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCSECH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCSIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCSINH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCTAN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ARCTANH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_CEILING’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_COS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_COSH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_COT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_COTH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_CSC’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_CSCH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_DELAY’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_EXP’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_FACTORIAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_FLOOR’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_LN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_LOG’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_PIECEWISE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_POWER’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_ROOT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_SEC’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_SECH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_SIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_SINH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_TAN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_TANH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LOGICAL_AND’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LOGICAL_NOT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LOGICAL_OR’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LOGICAL_XOR’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_RELATIONAL_EQ’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_RELATIONAL_GEQ’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_RELATIONAL_GT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_RELATIONAL_LEQ’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_RELATIONAL_LT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_RELATIONAL_NEQ’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_END_OF_CORE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_MAX’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_MIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_QUOTIENT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_RATE_OF’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_FUNCTION_REM’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LOGICAL_IMPLIES’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CSYMBOL_FUNCTION’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_NORMAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_UNIFORM’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_BERNOULLI’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_BINOMIAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_CAUCHY’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_CHISQUARE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_EXPONENTIAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_GAMMA’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_LAPLACE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_LOGNORMAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_POISSON’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_DISTRIB_FUNCTION_RAYLEIGH’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LINEAR_ALGEBRA_VECTOR’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LINEAR_ALGEBRA_SELECTOR’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LINEAR_ALGEBRA_MATRIX’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LINEAR_ALGEBRA_MATRIXROW’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LINEAR_ALGEBRA_DETERMINANT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LINEAR_ALGEBRA_TRANSPOSE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LINEAR_ALGEBRA_VECTOR_PRODUCT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LINEAR_ALGEBRA_SCALAR_PRODUCT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LINEAR_ALGEBRA_OUTER_PRODUCT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LOGICAL_EXISTS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_LOGICAL_FORALL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_STATISTICS_MEAN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_STATISTICS_MEDIAN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_STATISTICS_MODE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_STATISTICS_MOMENT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_STATISTICS_SDEV’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_STATISTICS_VARIANCE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_STATISTICS_MOMENTABOUT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SERIES_PRODUCT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SERIES_SUM’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SERIES_LIMIT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SERIES_TENDSTO’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_ALGEBRA_GCD’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_ALGEBRA_CONJUGATE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_ALGEBRA_ARG’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_ALGEBRA_REAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_ALGEBRA_IMAGINARY’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_ALGEBRA_LCM’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_RELATIONS_EQUIVALENT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_RELATIONS_APPROX’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_RELATIONS_FACTOROF’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CALCULUS_INT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CALCULUS_DIFF’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CALCULUS_PARTIALDIFF’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CALCULUS_LOWLIMIT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CALCULUS_UPLIMIT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CALCULUS_DIVERGENCE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CALCULUS_GRAD’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CALCULUS_CURL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CALCULUS_LAPLACIAN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_SET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_LIST’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_UNION’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_INTERSECT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_IN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_NOTIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_SUBSET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_PRSUBSET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_NOTSUBSET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_NOTPRSUBSET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_SETDIFF’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_CARD’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_SET_THEORY_CARTESIANPRODUCT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANT_IMAGINARYI’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANTS_INTEGERS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANTS_REALS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANTS_RATIONALS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANTS_NATURALNUMBERS’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANTS_COMPLEXES’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANTS_PRIMES’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANTS_EMPTYSET’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_CONSTANTS_EULERGAMMA’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_BASIC_CONTENT_INTERVAL’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_BASIC_CONTENT_INVERSE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_BASIC_CONTENT_CONDITION’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_BASIC_CONTENT_DECLARE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_BASIC_CONTENT_COMPOSE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_BASIC_CONTENT_IDENT’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_BASIC_CONTENT_DOMAIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_BASIC_CONTENT_CODOMAIN’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_BASIC_CONTENT_IMAGE’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_BASIC_CONTENT_DOMAINOFAPPLICATION’ not handled in switch [-Wswitch] /<>/src/sbml/math/ASTNode.cpp:3749:14: warning: enumeration value ‘AST_UNKNOWN’ not handled in switch [-Wswitch] [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /<>/src/sbml/math/DefinitionURLRegistry.cpp /<>/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static int DefinitionURLRegistry::addDefinitionURL(const std::string&, int)’: /<>/src/sbml/math/DefinitionURLRegistry.cpp:82:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 82 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)’: /<>/src/sbml/math/DefinitionURLRegistry.cpp:106:11: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 106 | if (i == index) | ~~^~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.cpp.o -c /<>/src/sbml/math/FormulaFormatter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/math/FormulaFormatter.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o -c /<>/src/sbml/math/FormulaParser.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaParser.h:49, from /<>/src/sbml/math/FormulaParser.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o -c /<>/src/sbml/math/FormulaTokenizer.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o -c /<>/src/sbml/math/L3FormulaFormatter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/math/L3FormulaFormatter.cpp:49: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3Parser.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/math/L3Parser.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/L3Parser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/L3Parser.cpp.o -c /<>/src/sbml/math/L3Parser.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from L3Parser.ypp:86: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o -c /<>/src/sbml/math/L3ParserSettings.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/L3ParserSettings.h:442, from /<>/src/sbml/math/L3ParserSettings.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o -c /<>/src/sbml/math/MathML.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/math/MathML.cpp:47: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/math/MathML.cpp: In function ‘bool isValidCSymbol(SBMLNamespaces*, ASTNodeType_t)’: /<>/src/sbml/math/MathML.cpp:404:18: warning: unused variable ‘version’ [-Wunused-variable] 404 | unsigned int version = sbmlns->getVersion(); | ^~~~~~~ /<>/src/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’: /<>/src/sbml/math/MathML.cpp:424:16: warning: unused variable ‘n’ [-Wunused-variable] 424 | unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs(); | ^ /<>/src/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’: /<>/src/sbml/math/MathML.cpp:2177:21: warning: unused variable ‘name’ [-Wunused-variable] 2177 | const string& name = element1.getName(); | ^~~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o -MF CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o.d -o CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o -c /<>/src/sbml/units/FormulaUnitsData.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/FormulaUnitsData.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/UnitFormulaFormatter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/units/UnitFormulaFormatter.cpp.o -MF CMakeFiles/sbml.dir/sbml/units/UnitFormulaFormatter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/units/UnitFormulaFormatter.cpp.o -c /<>/src/sbml/units/UnitFormulaFormatter.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/units/UnitFormulaFormatter.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/UnitKindList.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/units/UnitKindList.cpp.o -MF CMakeFiles/sbml.dir/sbml/units/UnitKindList.cpp.o.d -o CMakeFiles/sbml.dir/sbml/units/UnitKindList.cpp.o -c /<>/src/sbml/units/UnitKindList.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/CallbackRegistry.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/util/CallbackRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/util/CallbackRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/util/CallbackRegistry.cpp.o -c /<>/src/sbml/util/CallbackRegistry.cpp [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/ElementFilter.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src 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-I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/util/Stack.c.o -MF CMakeFiles/sbml.dir/sbml/util/Stack.c.o.d -o CMakeFiles/sbml.dir/sbml/util/Stack.c.o -c /<>/src/sbml/util/Stack.c [ 25%] Building C object src/CMakeFiles/sbml.dir/sbml/util/StringBuffer.c.o cd /<>/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common 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CMakeFiles/sbml.dir/sbml/util/memory.c.o.d -o CMakeFiles/sbml.dir/sbml/util/memory.c.o -c /<>/src/sbml/util/memory.c [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/util.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/util/util.cpp.o -MF CMakeFiles/sbml.dir/sbml/util/util.cpp.o.d -o CMakeFiles/sbml.dir/sbml/util/util.cpp.o -c /<>/src/sbml/util/util.cpp [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o -c /<>/src/sbml/validator/ConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/ConsistencyValidator.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -c /<>/src/sbml/validator/IdentifierConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/IdentifierConsistencyValidator.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/InternalConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/InternalConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/InternalConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/InternalConsistencyValidator.cpp.o -c /<>/src/sbml/validator/InternalConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/InternalConsistencyValidator.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o -c /<>/src/sbml/validator/L1CompatibilityValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/L1CompatibilityConstraints.cpp:49, from /<>/src/sbml/validator/L1CompatibilityValidator.cpp:52: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o -c /<>/src/sbml/validator/L2v1CompatibilityValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:49, from /<>/src/sbml/validator/L2v1CompatibilityValidator.cpp:52: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -c /<>/src/sbml/validator/L2v2CompatibilityValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:49, from /<>/src/sbml/validator/L2v2CompatibilityValidator.cpp:52: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o -c /<>/src/sbml/validator/L2v3CompatibilityValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:49, from /<>/src/sbml/validator/L2v3CompatibilityValidator.cpp:52: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o -c /<>/src/sbml/validator/L2v4CompatibilityValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:49, from /<>/src/sbml/validator/L2v4CompatibilityValidator.cpp:52: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o -c /<>/src/sbml/validator/L3v1CompatibilityValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:47, from /<>/src/sbml/validator/L3v1CompatibilityValidator.cpp:52: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -c /<>/src/sbml/validator/L3v2CompatibilityValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/L3v2CompatibilityConstraints.cpp:47, from /<>/src/sbml/validator/L3v2CompatibilityValidator.cpp:52: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o -c /<>/src/sbml/validator/MathMLConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/MathMLConsistencyValidator.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o -c /<>/src/sbml/validator/ModelingPracticeValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/ModelingPracticeValidator.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/OverdeterminedValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/OverdeterminedValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/OverdeterminedValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/OverdeterminedValidator.cpp.o -c /<>/src/sbml/validator/OverdeterminedValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/OverdeterminedValidator.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o -c /<>/src/sbml/validator/SBMLExternalValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/validator/SBMLValidator.h:84, from /<>/src/sbml/validator/SBMLExternalValidator.h:52, from /<>/src/sbml/validator/SBMLExternalValidator.cpp:45: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o -c /<>/src/sbml/validator/SBMLInternalValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/validator/SBMLValidator.h:84, from /<>/src/sbml/validator/SBMLInternalValidator.h:72, from /<>/src/sbml/validator/SBMLInternalValidator.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o -c /<>/src/sbml/validator/SBMLValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/validator/SBMLValidator.h:84, from /<>/src/sbml/validator/SBMLValidator.cpp:43: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o -c /<>/src/sbml/validator/SBOConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/SBOConsistencyValidator.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o -c /<>/src/sbml/validator/StrictUnitConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/StrictUnitConsistencyValidator.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o -c /<>/src/sbml/validator/UnitConsistencyValidator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/UnitConsistencyValidator.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o -c /<>/src/sbml/validator/VConstraint.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/VConstraint.cpp:42: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/Validator.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/Validator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/Validator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/Validator.cpp.o -c /<>/src/sbml/validator/Validator.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/validator/Validator.cpp:48: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o -c /<>/src/sbml/validator/constraints/ArgumentsUnitsCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o -c /<>/src/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o -c /<>/src/sbml/validator/constraints/AssignmentCycles.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/AssignmentCycles.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -c /<>/src/sbml/validator/constraints/AssignmentRuleOrdering.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/AssignmentRuleOrdering.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/CiElementMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/CiElementMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o -c /<>/src/sbml/validator/constraints/CiElementNot0DComp.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/CiElementNot0DComp.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o -c /<>/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o -c /<>/src/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/EqualityArgsMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/EqualityArgsMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o -c /<>/src/sbml/validator/constraints/ExponentUnitsCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/ExponentUnitsCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/FunctionApplyMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/FunctionApplyMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o -c /<>/src/sbml/validator/constraints/FunctionDefinitionRecursion.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/FunctionDefinitionRecursion.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o -c /<>/src/sbml/validator/constraints/FunctionDefinitionVars.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/FunctionDefinitionVars.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o -c /<>/src/sbml/validator/constraints/FunctionReferredToExists.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/FunctionReferredToExists.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o -c /<>/src/sbml/validator/constraints/IdBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/IdBase.h:52, from /<>/src/sbml/validator/constraints/IdBase.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o -c /<>/src/sbml/validator/constraints/IdNameNewOnSBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/IdNameNewOnSBase.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o -c /<>/src/sbml/validator/constraints/KineticLawUnitsCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/KineticLawUnitsCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o -c /<>/src/sbml/validator/constraints/KineticLawVars.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/KineticLawVars.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/LambdaMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/LambdaMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/LocalParameterMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/LocalParameterMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -c /<>/src/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/LogicalArgsMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/LogicalArgsMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/MathMLBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/MathMLBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/MathMLBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/MathMLBase.cpp.o -c /<>/src/sbml/validator/constraints/MathMLBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/MathMLBase.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o -c /<>/src/sbml/validator/constraints/ModelUnitsDangling.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/ModelUnitsDangling.h:55, from /<>/src/sbml/validator/constraints/ModelUnitsDangling.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/NumberArgsMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/NumberArgsMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/NumericArgsMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/NumericArgsMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/NumericReturnMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/NumericReturnMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o -c /<>/src/sbml/validator/constraints/OverDeterminedCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/OverDeterminedCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/PieceBooleanMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/PieceBooleanMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/PiecewiseValueMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o -c /<>/src/sbml/validator/constraints/PowerUnitsCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/PowerUnitsCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -c /<>/src/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o -c /<>/src/sbml/validator/constraints/RateOfCycles.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/RateOfCycles.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -c /<>/src/sbml/validator/constraints/ReportEmptyListOf.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/ReportEmptyListOf.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o -c /<>/src/sbml/validator/constraints/SpeciesReactionOrRule.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/SpeciesReactionOrRule.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o -c /<>/src/sbml/validator/constraints/StoichiometryMathVars.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/StoichiometryMathVars.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -c /<>/src/sbml/validator/constraints/UniqueIdBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/IdBase.h:52, from /<>/src/sbml/validator/constraints/UniqueIdBase.h:55, from /<>/src/sbml/validator/constraints/UniqueIdBase.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o -c /<>/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o -c /<>/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o -c /<>/src/sbml/validator/constraints/UniqueIdsInModel.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/UniqueIdsInModel.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -c /<>/src/sbml/validator/constraints/UniqueMetaId.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/units/UnitFormulaFormatter.h:67, from /<>/src/sbml/validator/VConstraint.h:60, from /<>/src/sbml/validator/constraints/UniqueMetaId.h:55, from /<>/src/sbml/validator/constraints/UniqueMetaId.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o -c /<>/src/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:46: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -c /<>/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o -c /<>/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o -c /<>/src/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -c /<>/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o -c /<>/src/sbml/validator/constraints/UniqueVarsInRules.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/UniqueVarsInRules.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UnitsBase.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UnitsBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UnitsBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UnitsBase.cpp.o -c /<>/src/sbml/validator/constraints/UnitsBase.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/UnitsBase.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o -c /<>/src/sbml/validator/constraints/ValidCnUnitsValue.cpp In file included from /<>/src/sbml/SBMLErrorLog.h:112, from /<>/src/sbml/SBMLDocument.h:305, from /<>/src/sbml/SBMLTypes.h:48, from /<>/src/sbml/SBMLTransforms.h:60, from /<>/src/sbml/extension/ASTBasePlugin.h:68, from /<>/src/sbml/math/ASTNode.h:189, from /<>/src/sbml/math/FormulaFormatter.h:49, from /<>/src/sbml/units/FormulaUnitsData.h:93, from /<>/src/sbml/Model.h:467, from /<>/src/sbml/validator/constraints/ValidCnUnitsValue.cpp:44: /<>/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ /<>/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /<>/src/sbml/SBMLErrorLog.h:326:8: note: by ‘SBMLErrorLog::add’ 326 | void add (const std::vector& errors); | ^~~ [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator -I/<>/src/sbml/packages/groups/validator/constraints -I/<>/src/sbml/packages/l3v2extendedmath/common -I/<>/src/sbml/packages/l3v2extendedmath/extension -I/<>/src/sbml/packages/l3v2extendedmath/sbml -I/<>/src/sbml/packages/l3v2extendedmath/validator -I/<>/src/sbml/packages/l3v2extendedmath/validator/constraints -I/<>/src/sbml/packages/qual/common -I/<>/src/sbml/packages/qual/extension -I/<>/src/sbml/packages/qual/sbml -I/<>/src/sbml/packages/qual/validator -I/<>/src/sbml/packages/qual/validator/constraints -I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o -c /<>/src/sbml/compress/CompressCommon.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator 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-ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o -c /<>/src/sbml/compress/InputDecompressor.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util 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-I/<>/src/sbml/packages/render/common -I/<>/src/sbml/packages/render/extension -I/<>/src/sbml/packages/render/sbml -I/<>/src/sbml/packages/render/util -I/<>/src/sbml/packages/render/validator -I/<>/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o -c /<>/src/sbml/compress/OutputCompressor.cpp [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o -c /<>/src/sbml/xml/XMLNode.cpp [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension 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-Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -c /<>/src/sbml/xml/XMLOutputStream.cpp /<>/src/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeComment(const std::string&, const std::string&, bool)’: /<>/src/sbml/xml/XMLOutputStream.cpp:997:44: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-truncation=] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~ In member function ‘void XMLOutputStream::writeComment(const std::string&, const std::string&, bool)’, inlined from ‘void XMLOutputStream::writeComment(const std::string&, const std::string&, bool)’ at /<>/src/sbml/xml/XMLOutputStream.cpp:973:1: /<>/src/sbml/xml/XMLOutputStream.cpp:997:40: note: directive argument in the range [-2147483647, 2147483647] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4109, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /<>/src/sbml/xml/XMLOutputStream.cpp:44: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void XMLOutputStream::writeComment(const std::string&, const std::string&, bool)’ at /<>/src/sbml/xml/XMLOutputStream.cpp:997:13, inlined from ‘void XMLOutputStream::writeComment(const std::string&, const std::string&, bool)’ at /<>/src/sbml/xml/XMLOutputStream.cpp:973:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 14 and 60 bytes into a destination of size 17 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator -I/<>/src/sbml/packages/fbc/validator/constraints -I/<>/src/sbml/packages/groups/common -I/<>/src/sbml/packages/groups/extension -I/<>/src/sbml/packages/groups/sbml -I/<>/src/sbml/packages/groups/validator 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src/CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o -c /<>/src/sbml/xml/XMLTriple.cpp [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLAttributes.cpp.o cd /<>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/<>/build/src/src/sbml -I/<>/build/src/src -I/<>/build/src -I/<>/src -I/<>/src/sbml -I/<>/src/sbml/packages/comp/common -I/<>/src/sbml/packages/comp/extension -I/<>/src/sbml/packages/comp/sbml -I/<>/src/sbml/packages/comp/util -I/<>/src/sbml/packages/comp/validator -I/<>/src/sbml/packages/comp/validator/constraints -I/<>/src/sbml/packages/fbc/common -I/<>/src/sbml/packages/fbc/extension -I/<>/src/sbml/packages/fbc/sbml -I/<>/src/sbml/packages/fbc/util -I/<>/src/sbml/packages/fbc/validator 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-o CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -c /<>/src/sbml/xml/LibXMLParser.cpp /<>/src/sbml/xml/LibXMLParser.cpp: In member function ‘virtual bool LibXMLParser::parseNext()’: /<>/src/sbml/xml/LibXMLParser.cpp:427:46: error: invalid conversion from ‘const xmlError*’ {aka ‘const _xmlError*’} to ‘xmlErrorPtr’ {aka ‘_xmlError*’} [-fpermissive] 427 | xmlErrorPtr libxmlError = xmlGetLastError(); | ~~~~~~~~~~~~~~~^~ | | | const xmlError* {aka const _xmlError*} make[3]: *** [src/CMakeFiles/sbml.dir/build.make:5623: src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o] Error 1 make[3]: Leaving directory '/<>/build' make[2]: *** [CMakeFiles/Makefile2:1594: src/CMakeFiles/sbml.dir/all] Error 2 make[2]: Leaving directory '/<>/build' make[1]: *** [Makefile:169: all] Error 2 make[1]: Leaving directory '/<>/build' dh_auto_build: error: cd build && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:60: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-06-02T19:14:18Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 424860 Build-Time: 671 Distribution: sid Fail-Stage: build Host Architecture: amd64 Install-Time: 118 Job: /srv/debomatic/incoming/libsbml_5.20.2+dfsg-7.dsc Machine Architecture: amd64 Package: libsbml Package-Time: 800 Source-Version: 5.20.2+dfsg-7 Space: 424860 Status: attempted Version: 5.20.2+dfsg-7 -------------------------------------------------------------------------------- Finished at 2024-06-02T19:14:18Z Build needed 00:13:20, 424860k disk space