sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | libdata-stag-perl 0.14-3 (amd64) Mon, 05 Aug 2024 12:59:52 +0000 | +==============================================================================+ Package: libdata-stag-perl Version: 0.14-3 Source Version: 0.14-3 Distribution: sid Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-debomatic-a95e7f21-cc09-4cd9-a89a-873ef5bcfe93' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libdata-stag-perl_0.14-3 sid amd64 --------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libdata-stag-perl_0.14-3 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libdata-stag-perl-akBqgE/resolver-w5T1ue' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://deb.debian.org/debian unstable InRelease Hit:2 http://deb.debian.org/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libdata-stag-perl_0.14-3.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libdata-stag-perl-akBqgE/libdata-stag-perl-0.14' with '<>' I: NOTICE: Log filtering will replace 'build/libdata-stag-perl-akBqgE' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, perl, libio-string-perl, libxml-perl, rename Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, perl, libio-string-perl, libxml-perl, rename dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [683 B] Get:5 copy:/<>/apt_archive ./ Packages [695 B] Fetched 1987 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libclone-perl libdebhelper-perl libelf1t64 libencode-locale-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf rename sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libclone-perl libdebhelper-perl libelf1t64 libencode-locale-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf rename sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 23.1 MB of archives. After this operation, 84.2 MB of additional disk space will be used. 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http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:26 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1 [99.4 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:52 http://deb.debian.org/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.088-1 [222 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libxml-parser-perl amd64 2.47-1+b2 [199 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 rename all 2.02-1 [21.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.1 MB in 0s (116 MB/s) Selecting previously unselected package netbase. (Reading database ... 20884 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.1-2_amd64.deb ... Unpacking openssl (3.3.1-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. 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Preparing to unpack .../60-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../61-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-2) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.16) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.71-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up openssl (3.3.1-2) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up liburi-perl (5.28-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libnet-http-perl (6.23-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1) ... Setting up libio-socket-ssl-perl (2.088-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Setting up libwww-perl (6.77-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libxml-parser-perl (2.47-1+b2) ... Setting up libxml-perl (0.08-4) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-2 bsdutils_1:2.40.2-2 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-4 g++-13-x86-64-linux-gnu_13.3.0-4 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-4 gcc-13-base_13.3.0-4 gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libblkid1_2.40.2-2 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.2.0-1 libclone-perl_0.46-1+b2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libencode-locale-perl_1.05-3 libexpat1_2.6.2-1 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-listing-perl_6.16-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-4 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.42.90.20240720-2 libhogweed6t64_3.10-1 libhtml-parser-perl_3.83-1 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_6.46-1 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-1 libicu72_72.1-5 libidn2-0_2.3.7-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.088-1 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2 liblsan0_14.2.0-1 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-2 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-1+b1 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libpipeline1_1.5.7-2 libquadmath0_14.2.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b3 libsemanage-common_3.5-1 libsemanage2_3.5-1+b4 libsepol2_3.5-2+b1 libsframe1_2.42.90.20240720-2 libsmartcols1_2.40.2-2 libsqlite3-0_3.46.0-1 libssl3t64_3.3.1-2 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 libsystemd0_256.4-2 libtasn1-6_4.19.0-3+b2 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libtsan2_14.2.0-1 libubsan1_14.2.0-1 libuchardet0_0.0.8-1+b1 libudev1_256.4-2 libunistring5_1.2-1 liburi-perl_5.28-1 libuuid1_2.40.2-2 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-parser-perl_2.47-1+b2 libxml-perl_0.08-4 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.9.12-1 locales-all_2.39-6 login_1:4.15.3-3 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.1-2 passwd_1:4.15.3-3 patch_2.7.6-7 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 perl-openssl-defaults_7+b2 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rename_2.02-1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-2 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libdata-stag-perl Binary: libdata-stag-perl Architecture: all Version: 0.14-3 Maintainer: Debian Perl Group Uploaders: Charles Plessy , Damyan Ivanov , Florian Schlichting Homepage: http://stag.sourceforge.net/ Standards-Version: 3.9.8 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libdata-stag-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libdata-stag-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl, libio-string-perl, libxml-perl, rename Package-List: libdata-stag-perl deb perl optional arch=all Checksums-Sha1: 4146dcbfaccb744832ddc3a8e826feb8606faa28 428107 libdata-stag-perl_0.14.orig.tar.gz b5bc720b219d0e7bd2ad2368c44724fb2f8951b5 5488 libdata-stag-perl_0.14-3.debian.tar.xz Checksums-Sha256: 4ab122508d2fb86d171a15f4006e5cf896d5facfa65219c0b243a89906258e59 428107 libdata-stag-perl_0.14.orig.tar.gz baeb0188d94f4a0b8f104d72f9bd9c57cb377db56efae7a0425cb54213a6b211 5488 libdata-stag-perl_0.14-3.debian.tar.xz Files: f803acf74f1bfccc118aeac5483ee871 428107 libdata-stag-perl_0.14.orig.tar.gz ad4c8eb64758bb5b192b40f4db64b475 5488 libdata-stag-perl_0.14-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEsjhixBXWVlpOhsvXV5wWDUyeI+gFAmKmZjcACgkQV5wWDUye I+jYBg//RFH8me9+ZubCUXl44qQO3J+fbniemUES5DgOTK81jKGLNWADYiGy7n1D Zzh9TkFVVjexYH/lbwpIG8oybRRWYiprgLEIBOOTa8saUVLS/m1aRAvH4KE32lXp KGAIfI3I7AE/yHgIjzN+E0pQq27S0V/4g47ZbhO1qPdTywwighiFEg52z7msmlb9 mJrJLnAuu8guSk6cZii9+94qhtcypZdDuw3e0UeF821Ya1aPs7pDL31rU8YwOamm i8kHWH4MqN0DaNPpNbgLB1xg8IEiM9kS2hpZo30xJWG/cDQJC4sPVyyPR82j9UOz fDFPZdIIIaOQVSYM+8xXfjqUKL8oit4IH64wTXaf9aJP02JTuJToaw9+dUdReV7p I/jNuKJ/KN9ibLkaRPMICNX3MBCoJV2ntV65RjTakxxddVDZ4eNTj3RCLgtOuLpq gDpUcZ/D8K/DCYfPsvIylkXs0QO9JBQsquvFezKQaaI5qH3t5OoUdo6JqjherlXK r+80u7pdUEzBSsv3cl03ZNlkDPoTETGWULn68Swrefkia2OoTeJ/bmc0HO+hBIFW ZpeshukWWvLiu0IXE+fKLuyKtNPmiXaL9VSzT1YNq6gDUJFLP4BhgMpDAqjaOTjv Gng6ZvFopwUsbKui4BHgM1G65aocOHrVWoYEepeS2/EGaLdYY8U= =Bw0D -----END PGP SIGNATURE----- gpgv: Signature made Sun Jun 12 22:18:31 2022 UTC gpgv: using RSA key B23862C415D6565A4E86CBD7579C160D4C9E23E8 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libdata-stag-perl_0.14-3.dsc: no acceptable signature found dpkg-source: info: extracting libdata-stag-perl in /<> dpkg-source: info: unpacking libdata-stag-perl_0.14.orig.tar.gz dpkg-source: info: unpacking libdata-stag-perl_0.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_names.patch dpkg-source: info: applying no-sf-logo.patch dpkg-source: info: applying fix_pod_errors.patch dpkg-source: info: applying more_pod_errors.patch dpkg-source: info: applying more_spelling_fixes.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libdata-stag-perl_0.14-3 sid amd64 --------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libdata-stag-perl_0.14-3 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=sid-amd64-debomatic SCHROOT_CHROOT_NAME=sid-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=sid-amd64-debomatic-a95e7f21-cc09-4cd9-a89a-873ef5bcfe93 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libdata-stag-perl dpkg-buildpackage: info: source version 0.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Jelmer Vernooij dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libdata-stag-perl using existing ./libdata-stag-perl_0.14.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libdata-stag-perl in libdata-stag-perl_0.14-3.debian.tar.xz dpkg-source: info: building libdata-stag-perl in libdata-stag-perl_0.14-3.dsc debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" External Module Tk, Tk, is not installed on this computer. stag-view.pl in Data::Stag needs it for tree viewer External Module Graph::Directed, Generic Graph data stucture and algorithms, is not installed on this computer. Data::Stag::GraphHandler in Data::Stag needs it for transforming stag trees to graphs External Module XML::LibXSLT, XSLT, is not installed on this computer. Data::Stag::XSLTHandler in Data::Stag needs it for XSLT Transformations External Module JSON, JSON parser and writer, is not installed on this computer. Data::Stag::JSONWriter in Data::Stag needs it for Writing JSON External Module MLDBM, multilevel hash store, is not installed on this computer. Data::Stag::StagDB in Data::Stag needs it for indexing stag nodes External Module GD, Graphical Drawing Toolkit, is not installed on this computer. stag-drawtree.pl in Data::Stag needs it for drawing trees Information: There are some external packages and perl modules, listed above, which stag uses. This only effects the functionality which is listed above: the rest of stag will work fine, which includes nearly all of the core functionality. Enjoy the rest of stag, which you can use after going 'make install' Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Data Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp Data/Stag/BaseGenerator.pm blib/lib/Data/Stag/BaseGenerator.pm cp Data/Stag/PerlWriter.pm blib/lib/Data/Stag/PerlWriter.pm cp Data/Stag/Simple.pm blib/lib/Data/Stag/Simple.pm cp Data/Stag/ITextParser.pm blib/lib/Data/Stag/ITextParser.pm cp Data/Stag/StagI.pm blib/lib/Data/Stag/StagI.pm cp Data/Stag/HashDB.pm blib/lib/Data/Stag/HashDB.pm cp Data/Stag/StagImpl.pm blib/lib/Data/Stag/StagImpl.pm cp Data/Stag/XMLWriter.pm blib/lib/Data/Stag/XMLWriter.pm cp Data/Stag/IndentWriter.pm blib/lib/Data/Stag/IndentWriter.pm cp Data/Stag/null.pm blib/lib/Data/Stag/null.pm cp Data/Stag/XMLParser.pm blib/lib/Data/Stag/XMLParser.pm cp Data/Stag/IndentParser.pm blib/lib/Data/Stag/IndentParser.pm cp Data/Stag.pm blib/lib/Data/Stag.pm cp Data/Stag/SxprParser.pm blib/lib/Data/Stag/SxprParser.pm cp Data/Stag/GraphHandler.pm blib/lib/Data/Stag/GraphHandler.pm cp Data/Stag/ITextWriter.pm blib/lib/Data/Stag/ITextWriter.pm cp Data/Stag/Base.pm blib/lib/Data/Stag/Base.pm cp Data/Stag/SxprWriter.pm blib/lib/Data/Stag/SxprWriter.pm cp Data/Stag/Util.pm blib/lib/Data/Stag/Util.pm cp Data/Stag/StagDB.pm blib/lib/Data/Stag/StagDB.pm cp Data/Stag/SAX2Stag.pm blib/lib/Data/Stag/SAX2Stag.pm cp Data/Stag/PodParser.pm blib/lib/Data/Stag/PodParser.pm cp Data/Stag/Arr2HTML.pm blib/lib/Data/Stag/Arr2HTML.pm cp Data/Stag/BaseHandler.pm blib/lib/Data/Stag/BaseHandler.pm cp Data/Stag/XSLTHandler.pm blib/lib/Data/Stag/XSLTHandler.pm cp Data/Stag/JSONWriter.pm blib/lib/Data/Stag/JSONWriter.pm cp Data/Stag/DTDWriter.pm blib/lib/Data/Stag/DTDWriter.pm cp Data/Stag/Writer.pm blib/lib/Data/Stag/Writer.pm cp Data/Stag/ChainHandler.pm blib/lib/Data/Stag/ChainHandler.pm cp Data/Stag/XSLHandler.pm blib/lib/Data/Stag/XSLHandler.pm cp scripts/stag-autoschema.pl blib/script/stag-autoschema.pl cp scripts/stag-db.pl blib/script/stag-db.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-autoschema.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-db.pl cp scripts/stag-diff.pl blib/script/stag-diff.pl cp scripts/stag-drawtree.pl blib/script/stag-drawtree.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-diff.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-drawtree.pl cp scripts/stag-filter.pl blib/script/stag-filter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-filter.pl cp scripts/stag-findsubtree.pl blib/script/stag-findsubtree.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-findsubtree.pl cp scripts/stag-flatten.pl blib/script/stag-flatten.pl cp scripts/stag-grep.pl blib/script/stag-grep.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-flatten.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-grep.pl cp scripts/stag-handle.pl blib/script/stag-handle.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-handle.pl cp scripts/stag-itext2simple.pl blib/script/stag-itext2simple.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2simple.pl cp scripts/stag-itext2sxpr.pl blib/script/stag-itext2sxpr.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2sxpr.pl cp scripts/stag-itext2xml.pl blib/script/stag-itext2xml.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2xml.pl cp scripts/stag-join.pl blib/script/stag-join.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-join.pl cp scripts/stag-merge.pl blib/script/stag-merge.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-merge.pl cp scripts/stag-mogrify.pl blib/script/stag-mogrify.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-mogrify.pl cp scripts/stag-parse.pl blib/script/stag-parse.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-parse.pl cp scripts/stag-query.pl blib/script/stag-query.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-query.pl cp scripts/stag-splitter.pl blib/script/stag-splitter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-splitter.pl cp scripts/stag-view.pl blib/script/stag-view.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-view.pl cp scripts/stag-xml2itext.pl blib/script/stag-xml2itext.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-xml2itext.pl Manifying 20 pod documents Manifying 27 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/autoschema.t ....... 1..3 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 '(db (species_set (species+ (common_name "VARCHAR\(31\)") (binomial "VARCHAR\(31\)") (tax_id "INT"))) (gene_set (gene+ (symbol "VARCHAR\(15\)") (tax_id "INT") (phenotype* "VARCHAR\(31\)") (GO_term "VARCHAR\(63\)") (map? (cytological (chromosome "INT") (band "VARCHAR\(15\)"))) (synonym "VARCHAR\(7\)"))) (similarity_set (pair+ (symbol+ "VARCHAR\(15\)")))) ok 1 ok 2 ok 3 ok t/chainhandler.t ..... 1..2 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 chainhandler... checking.. ok 1 ok 2 ok t/db.t ............... 1..1 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 lucas george star wars sci-fi ford harrison han solo fisher carrie princess leia hamill mark luke skywalker earl-jones james darth vader prowse david darth vader guiness alec obi-wan kenobi attack of the clones sci-fi mcgregor ewan obi-wan kenobi portman natalie princess amigdala jackson peter braindead horror - - - lord of the rings fantasy lee christopher saruman kellan ian gandalf kurosawa akira seven samurai samurai mifune toshiro Kikuchiyo cameron john terminator sci-fi schwarzenegger arnold terminator terminator2 sci-fi schwarzenegger arnold terminator coen joel barton fink odd turturro john barton fink goodman john charlie meadows coen ethan barton fink odd turturro john barton fink goodman john charlie meadows star wars sci-fi lucas george US han solo ford harrison princess leia fisher carrie luke skywalker hamill mark darth vader earl-jones james prowse david obi-wan kenobi guiness alec attack of the clones sci-fi lucas george US obi-wan kenobi mcgregor ewan princess amigdala portman natalie braindead horror jackson peter new zealand - - - lord of the rings fantasy jackson peter new zealand saruman lee christopher gandalf kellan ian seven samurai samurai kurosawa akira japan Kikuchiyo mifune toshiro terminator sci-fi cameron john US terminator schwarzenegger arnold terminator2 sci-fi cameron john US terminator schwarzenegger arnold barton fink odd coen joel US coen ethan US barton fink turturro john charlie meadows goodman john isa dog mammal isa cat mammal isa mammal animal isa zebra horse isa horse mammal isa unicorn horse isa unicorn imaginary-animal instance-of rover dog instance-of whiskers cat instance-of spot dog parent-of spot rover ok 1 ok t/emptytag.t ......... 1..3 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 foo 0 0 '(a (b "foo") (c "") (d "0") (e "0") (f "")) ok 1 ok 2 4 1 1 4 ok 3 ok t/get.t .............. 1..17 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 ok 1 ok 2 house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 10090 integral membrane protein S:HGNC Hfe HGNC Hfe WNT3A Wnt3a ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok t/handlers.t ......... 1..9 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 CACHING HGNC CACHING Hfe house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 HGNC Hfe HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 WNT3A Wnt3a Dunno what symbol WNT3A is Dunno what symbol Wnt3a is remaining tree: '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene_set (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")) (foo "1")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")))) (similarity_set (pair (symbol "HGNC") (symbol "Hfe") (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")) (foo "1")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")))) (pair (symbol "WNT3A") (symbol "Wnt3a") (comment "Dunno what symbol WNT3A is") (comment "Dunno what symbol Wnt3a is")))) HGNC Hfe HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 WNT3A Wnt3a Dunno what symbol WNT3A is Dunno what symbol Wnt3a is HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 ok 1 ok 2 ok 3 ok 4 '(gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090"))) ok 5 ok 6 ok 7 ok 8 ok 9 names=gene_set gene symbol tax_id phenotype phenotype GO_term map cytological chromosome band foo species common_name binomial tax_id gene symbol synonym tax_id GO_term species common_name binomial tax_id =>gene_set gene_set=>gene gene=>symbol gene=>tax_id gene=>phenotype gene=>phenotype gene=>GO_term gene=>map map=>cytological cytological=>chromosome cytological=>band map=>foo gene=>species species=>common_name species=>binomial species=>tax_id gene_set=>gene gene=>symbol gene=>synonym gene=>tax_id gene=>GO_term gene=>species species=>common_name species=>binomial species=>tax_id ok t/handlers2.t ........ 1..9 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 original: house mouse Mus musculus 10090 house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 human Homo sapiens 9606 remaining tree: '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606")))) ok 1 ok 2 ok 3 '( "") '( "") ok 4 ok 5 ok 6 ok 7 ok 8 '(set) ok 9 ok t/hashdb.t ........... 1..2 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 '(species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) ok 1 HASHING HASHED gene: symbol: HGNC tax_id: 9606 phenotype: Hemochromatosis phenotype: Porphyria variegata GO_term: iron homeostasis map: cytological: chromosome: 6 band: p21.3 ok 2 ok t/homol.t ............ 1..9 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 HGNC human Homo sapiens 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 house mouse Mus musculus 10090 integral membrane protein ok 1 ok 2 ok 3 ok 4 ok 5 HGNC human Homo sapiens 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 house mouse Mus musculus 10090 integral membrane protein ok 6 ok 7 ok 8 ok 9 names=gene_set gene symbol species common_name binomial tax_id phenotype phenotype GO_term map cytological chromosome band gene symbol synonym species common_name binomial tax_id GO_term =>gene_set gene_set=>gene gene=>symbol gene=>species species=>common_name species=>binomial species=>tax_id gene=>phenotype gene=>phenotype gene=>GO_term gene=>map map=>cytological cytological=>chromosome cytological=>band gene_set=>gene gene=>symbol gene=>synonym gene=>species species=>common_name species=>binomial species=>tax_id gene=>GO_term ok t/parsestr.t ......... 1..6 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 bar y ok 1 example of mixedcontent '(yo (paragraph (@ (id "1")) (. "example of") (bold "mixed") (. "content"))) ok 2 ok 3 ok 4 '(yo (paragraph (@ (id "1")) (. "example of") (bold "mixed") (. "content"))) TEXT '(yo (paragraph (@ (id "1")) (. "TEXT"))) ok 5 ok 6 ok t/qmatch.t ........... 1..9 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 big dave
foo methyl
shuggy
bar auchtermuchty
ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 1 2 2 ok 7 ok 8 2 ok 9 1 2 ok t/roundtrip-attrs.t .. 1..5 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 '(address (a (@ (href "mailto:cjm@fruitfly.org")) (. "fred"))) ok 4 Stag - Structured Tag Library

Stag - Structured Tag Library

#000000 top images/celtic-stag.gif The Stag project currently consists of two perl modules, both of which are available from http://www.cpan.orgCPANor http://sourceforge.net/projects/stagsourceforge:

Data::Stag

This module is for manipulating data as recursively nested tag/value pairs ( Structured tags or Simple Tree aggreggates). At this time there is only a perl implementation, http://search.cpan.org/perldoc?Data::StagData::Stag, but C and Lisp implementations are planned.



Stags can easily be represented as XML or as lisp-style S-expressions, or using the Stag native indented text format. They can also be represented in perl using nested arrays.

DBIx::DBStag

This module is for conversion between relational representations and hierarchical (Stag) representations. SQL query results are automatically decomposed into the relations and a hierarchical structure is inferred. This modules also allows you to create SQL templates - a powerful way of reusing SQL statements joining multiple tables.

http://search.cpan.org/perldoc?DBIx::DBStagDBIx::DBStag

#FF8888 http://www.godatabase.org/cgi-bin/ubiq/ubiq.cgiUBIQ Query Interface A demo of DBStag for mapping query results to hierarchical tag-value data. This interface provides WWW access to a number of bioinformatics databases (Gene Ontology, Ensembl, Chado, BioSQL, GadFly). Templates can be selected, or you can feed in your own SQL.
#FF8888 http://sourceforge.net/projects/stagStag project page on Sourceforge Here you can find the Stag CVS repository, mail lists, etc
#FF8888 http://www.fruitfly.org/~cjm/rel-talk/dbistag.htmlDBStag Tutorial Brief tutorial on basic DBStag usage for biological databases. (slightly out of date - some aspects of DBStag may have changed)
#FF8888 http://search.cpan.org/perldoc?DBIx::DBStag::CookbookDBIx::DBStag::Cookbook DBStag cookbook - shows how to generate a normalised relational db from an XML source (the CIA world factbook), create your own SQL templates and build a WWW query interface
#FF8888 http://search.cpan.org/perldoc?DBIx::DBStag::SQLTemplateDBIx::DBStag::SQLTemplate The POD manpage describing SQL templates - a powerful way of reusing complex SQL statements
#FF8888 stag-poster.htmlStag Poster DBStag poster from Genome Informatics 2003 at Cold Spring Harbor Laboratory (large image)

http://sourceforge.net 88 SourceForge.net Logo http://sourceforge.net/sflogo.php?group_id=68482&type=1 0 31
mailto:cjm@fruitfly.orgfred
Last modified: Mon Apr 12 11:33:36 PDT 2004 mailto:cjm@fruitfly.org ok 5 ok t/set-attrs.t ........ 1..3 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 '(person (name "jim") (phone_no "555-1111") (phone_no "555-2222")) '(person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) '(dataset (person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) (person (name "fred") (phone_no "555-5555"))) '(dataset (person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) (person (name "fred") (phone_no "555-5555")) (person (name "fred") (phone_no "555-5555"))) jim 555-1111 555-2222 555-3333 555-4444 jim 555-1111 555-2222 555-3333 555-4444 ok 1 ok 2 ok 3 ok t/set.t .............. 1..2 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:04 2024 # Current time GMT: Mon Aug 5 13:00:04 2024 # Using Test.pm version 1.31 detective Sherlock Holmes secret agent James Bond detective Sherlock Holmes
Great Britain 221B Baker Street London
secret agent James Bond
ok 1 detective Sherlock Holmes
Great Britain 221B Baker Street London
secret agent James Bond
ok 2 ok t/sxpr.t ............. 1..2 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:05 2024 # Current time GMT: Mon Aug 5 13:00:05 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok t/unhash.t ........... 1..4 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:05 2024 # Current time GMT: Mon Aug 5 13:00:05 2024 # Using Test.pm version 1.31 Sarah
10578 Hickory Street NY Katonah
James 30
34 Hill
Garden City NY The Manse 19 Chestnut Ln 11291
James
NY Hickory Street Katonah 10578
James 30 Sarah
James 34
NY The Manse 19 Chestnut Ln Garden City 11291
Hill
The Manse 19 Chestnut Ln ok 1 blue blonde Jill John Gerald Fred blue blonde Fred Jill John Gerald Jill John Gerald ok 2 ok 3 ok 4 ok t/unset.t ............ 1..4 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:05 2024 # Current time GMT: Mon Aug 5 13:00:05 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok t/write.t ............ 1..1 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:05 2024 # Current time GMT: Mon Aug 5 13:00:05 2024 # Using Test.pm version 1.31 about to write to t/data/test.sxpr written!! '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene_set (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein"))) (similarity_set (pair (symbol "HGNC") (symbol "Hfe")) (pair (symbol "WNT3A") (symbol "Wnt3a")))) ok 1 ok t/xml1.t ............. 1..7 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:05 2024 # Current time GMT: Mon Aug 5 13:00:05 2024 # Using Test.pm version 1.31 shuggybus driver55 tamforklift driverchips ok 1 $VAR1 = { 'personset' => { 'person' => [ { 'job' => 'bus driver', 'name' => 'shuggy', 'age' => '55' }, { 'name' => 'tam', 'job' => 'forklift driver', 'favourite_food' => 'chips' } ] } }; shuggy bus driver 55 tam forklift driver chips shuggy bus driver 100 tam forklift driver chips checking.. shuggy bus driver 100 ok 2 ok 3 tam forklift driver chips ok 4 ok 5 ok 6 yyy tam forklift driver chips ok 7 ok t/xml2.t ............. 1..4 # Running under perl version 5.038002 for linux # Current time local: Mon Aug 5 13:00:05 2024 # Current time GMT: Mon Aug 5 13:00:05 2024 # Using Test.pm version 1.31 $VAR1 = bless( [ 'person', [ bless( [ 'name', 'davey' ], 'Data::Stag::StagImpl' ), bless( [ 'address', 'here' ], 'Data::Stag::StagImpl' ), bless( [ 'description', [ bless( [ 'hair', 'green' ], 'Data::Stag::StagImpl' ), bless( [ 'eyes', 'two' ], 'Data::Stag::StagImpl' ), bless( [ 'teeth', 5 ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ), bless( [ 'pets', [ bless( [ 'petname', 'igor' ], 'Data::Stag::StagImpl' ), bless( [ 'petname', 'ginger' ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ); $VAR1 = bless( [ 'person', [ bless( [ 'name', 'shuggy' ], 'Data::Stag::StagImpl' ), bless( [ 'address', 'there' ], 'Data::Stag::StagImpl' ), bless( [ 'description', [ bless( [ 'hair', 'red' ], 'Data::Stag::StagImpl' ), bless( [ 'eyes', 'three' ], 'Data::Stag::StagImpl' ), bless( [ 'teeth', 1 ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ), bless( [ 'pets', [ bless( [ 'petname', 'thud' ], 'Data::Stag::StagImpl' ), bless( [ 'petname', 'spud' ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ); shuggy
there
red three 1 thud spud
desc green two 5 red three 1 ok 1 shuggy
there
red three 1 thud spud
finding green haired people.. davey
here
green two 5 igor ginger
ok 2 shuggy
there
red three 1 thud spud
ok 3 '(a "") '(foo (bar "1")) ok 4 ok All tests successful. Files=20, Tests=102, 1 wallclock secs ( 0.09 usr 0.01 sys + 0.67 cusr 0.21 csys = 0.98 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install make -j2 install DESTDIR=/<>/debian/libdata-stag-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/<>' Manifying 20 pod documents Manifying 27 pod documents Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SxprParser.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagI.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagImpl.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/BaseGenerator.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/JSONWriter.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XMLWriter.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagDB.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/GraphHandler.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/BaseHandler.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/null.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XSLTHandler.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Util.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Simple.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/HashDB.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SxprWriter.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/DTDWriter.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Base.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ITextParser.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XSLHandler.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Writer.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/PodParser.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ITextWriter.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XMLParser.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Arr2HTML.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SAX2Stag.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/IndentParser.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ChainHandler.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/PerlWriter.pm Installing /<>/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/IndentWriter.pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-splitter.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-parse.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-autoschema.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-xml2itext.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-db.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-flatten.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-view.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-merge.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-handle.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-query.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2xml.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-diff.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2simple.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-grep.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-filter.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2sxpr.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-mogrify.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-join.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-drawtree.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man1/stag-findsubtree.pl.1p Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XMLWriter.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SAX2Stag.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Arr2HTML.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ChainHandler.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ITextWriter.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::IndentParser.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ITextParser.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Writer.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XMLParser.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::PodParser.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Simple.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::JSONWriter.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SxprParser.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XSLTHandler.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::IndentWriter.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::BaseGenerator.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SxprWriter.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::BaseHandler.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::HashDB.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XSLHandler.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::PerlWriter.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::DTDWriter.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::GraphHandler.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::StagImpl.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::StagDB.3pm Installing /<>/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::null.3pm Installing /<>/debian/libdata-stag-perl/usr/bin/stag-findsubtree.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-itext2sxpr.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-parse.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-xml2itext.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-grep.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-flatten.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-query.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-itext2simple.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-filter.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-autoschema.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-diff.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-merge.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-view.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-mogrify.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-db.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-splitter.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-drawtree.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-join.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-handle.pl Installing /<>/debian/libdata-stag-perl/usr/bin/stag-itext2xml.pl make[2]: Leaving directory '/<>' file-rename 's/\.pl//' /<>/debian/libdata-stag-perl/usr/bin/* file-rename 's/\.pl//' /<>/debian/libdata-stag-perl/usr/share/man/man1/*1p* make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libdata-stag-perl' in '../libdata-stag-perl_0.14-3_all.deb'. dpkg-genbuildinfo -O../libdata-stag-perl_0.14-3_amd64.buildinfo dpkg-genchanges -O../libdata-stag-perl_0.14-3_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-05T13:00:08Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libdata-stag-perl_0.14-3_amd64.changes: --------------------------------------- Format: 1.8 Date: Sun, 12 Jun 2022 23:17:56 +0100 Source: libdata-stag-perl Binary: libdata-stag-perl Architecture: source all Version: 0.14-3 Distribution: sid Urgency: medium Maintainer: Debian Perl Group Changed-By: Jelmer Vernooij Description: libdata-stag-perl - module to manipulate Structured Tags datastructures Changes: libdata-stag-perl (0.14-3) unstable; urgency=medium . [ Salvatore Bonaccorso ] * Update Vcs-* headers for switch to salsa.debian.org . [ Debian Janitor ] * Bump debhelper from old 9 to 12. * Set debhelper-compat version in Build-Depends. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). . [ gregor herrmann ] * debian/watch: use uscan version 4. Checksums-Sha1: 9b4e3f37454b8342468c2ebd78f63a08630f38b1 1310 libdata-stag-perl_0.14-3.dsc 30be8f9586c806909a7ad040ba66e82432ba051a 5496 libdata-stag-perl_0.14-3.debian.tar.xz fb89ea5340491fea485f7c05a4a783c46e656a64 440516 libdata-stag-perl_0.14-3_all.deb 68dc18c05ea44c051c9552fafe0cdc1e1ce66154 6033 libdata-stag-perl_0.14-3_amd64.buildinfo Checksums-Sha256: b3fc671ee8f76c79a48fc03807aeda44dc999bc2cf9f51796462baf8f95decb3 1310 libdata-stag-perl_0.14-3.dsc c9b1306c7e8453e902170ca81bb2cb0c83c6dcdea31a4405f49ecc3cc7f6c3a3 5496 libdata-stag-perl_0.14-3.debian.tar.xz 54f4b5fe01098ccbd35a80c296481d504cadfc9d1fb76766f68074d388d92258 440516 libdata-stag-perl_0.14-3_all.deb 941e5f37fd04b0156a9e63417af8e22857c44611eb3bd9bdfd12c2352b89adf1 6033 libdata-stag-perl_0.14-3_amd64.buildinfo Files: d9186e91109581bfe0fd09c0d8d1d55c 1310 perl optional libdata-stag-perl_0.14-3.dsc eac62da8b2b92b204d3eefc392b2b3c2 5496 perl optional libdata-stag-perl_0.14-3.debian.tar.xz 26ddf00e403878325a99821c81a58a22 440516 perl optional libdata-stag-perl_0.14-3_all.deb 27d994d249cb091f0354f3acfffa988e 6033 perl optional libdata-stag-perl_0.14-3_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libdata-stag-perl Binary: libdata-stag-perl Architecture: all source Version: 0.14-3 Checksums-Md5: d9186e91109581bfe0fd09c0d8d1d55c 1310 libdata-stag-perl_0.14-3.dsc 26ddf00e403878325a99821c81a58a22 440516 libdata-stag-perl_0.14-3_all.deb Checksums-Sha1: 9b4e3f37454b8342468c2ebd78f63a08630f38b1 1310 libdata-stag-perl_0.14-3.dsc fb89ea5340491fea485f7c05a4a783c46e656a64 440516 libdata-stag-perl_0.14-3_all.deb Checksums-Sha256: b3fc671ee8f76c79a48fc03807aeda44dc999bc2cf9f51796462baf8f95decb3 1310 libdata-stag-perl_0.14-3.dsc 54f4b5fe01098ccbd35a80c296481d504cadfc9d1fb76766f68074d388d92258 440516 libdata-stag-perl_0.14-3_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 05 Aug 2024 13:00:08 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), binutils-x86-64-linux-gnu (= 2.42.90.20240720-2), bsdextrautils (= 2.40.2-2), bsdutils (= 1:2.40.2-2), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-4), cpp-13-x86-64-linux-gnu (= 13.3.0-4), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-4), gcc-13-base (= 13.3.0-4), gcc-13-x86-64-linux-gnu (= 13.3.0-4), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.42.90.20240720-2), libblkid1 (= 2.40.2-2), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-1), libclone-perl (= 0.46-1+b2), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libencode-locale-perl (= 1.05-3), libexpat1 (= 2.6.2-1), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.42.90.20240720-2), libhtml-parser-perl (= 3.83-1), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.46-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.088-1), libio-string-perl (= 1.08-4), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-1), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-2), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-5), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.2.0-1), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsmartcols1 (= 2.40.2-2), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsystemd0 (= 256.4-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), liburi-perl (= 5.28-1), libuuid1 (= 2.40.2-2), libwww-perl (= 6.77-1), libwww-robotrules-perl (= 6.02-1), libxml-parser-perl (= 2.47-1+b2), libxml-perl (= 0.08-4), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl (= 3.3.1-2), patch (= 2.7.6-7), perl (= 5.38.2-5), perl-base (= 5.38.2-5), perl-modules-5.38 (= 5.38.2-5), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), rename (= 2.02-1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-2), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1655072276" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libdata-stag-perl_0.14-3_all.deb -------------------------------- new Debian package, version 2.0. size 440516 bytes: control archive=4548 bytes. 995 bytes, 23 lines control 12166 bytes, 149 lines md5sums Package: libdata-stag-perl Version: 0.14-3 Architecture: all Maintainer: Debian Perl Group Installed-Size: 807 Depends: perl:any, libio-string-perl Recommends: perl-tk, libgd-gd2-perl | libgd-gd2-noxpm-perl, libxml-libxslt-perl, libmldbm-perl, libgraph-perl, libxml-perl Section: perl Priority: optional Homepage: http://stag.sourceforge.net/ Description: module to manipulate Structured Tags datastructures Data::Stag is for manipulating data as hierarchical tag/value pairs (Structured TAGs or Simple Tree AGgreggates). These datastructures can be represented as nested arrays, which have the advantage of being native to perl. A simple example is shown below: . [ person=> [ [ family_name => $family_name ], [ given_name => $given_name ], [ phone_no => $phone_no ] ] ], . Data::Stag uses a subset of XML for import and export. This means the module can also be used as a general XML parser/writer (with certain caveats). drwxr-xr-x root/root 0 2022-06-12 22:17 ./ drwxr-xr-x root/root 0 2022-06-12 22:17 ./usr/ drwxr-xr-x root/root 0 2022-06-12 22:17 ./usr/bin/ -rwxr-xr-x root/root 3247 2022-06-12 22:17 ./usr/bin/stag-autoschema -rwxr-xr-x root/root 5769 2022-06-12 22:17 ./usr/bin/stag-db -rwxr-xr-x root/root 6264 2022-06-12 22:17 ./usr/bin/stag-diff -rwxr-xr-x root/root 3066 2022-06-12 22:17 ./usr/bin/stag-drawtree -rwxr-xr-x root/root 4703 2022-06-12 22:17 ./usr/bin/stag-filter -rwxr-xr-x root/root 1621 2022-06-12 22:17 ./usr/bin/stag-findsubtree -rwxr-xr-x root/root 4126 2022-06-12 22:17 ./usr/bin/stag-flatten -rwxr-xr-x root/root 4627 2022-06-12 22:17 ./usr/bin/stag-grep -rwxr-xr-x root/root 4240 2022-06-12 22:17 ./usr/bin/stag-handle -rwxr-xr-x root/root 460 2022-06-12 22:17 ./usr/bin/stag-itext2simple -rwxr-xr-x root/root 406 2022-06-12 22:17 ./usr/bin/stag-itext2sxpr -rwxr-xr-x root/root 480 2022-06-12 22:17 ./usr/bin/stag-itext2xml -rwxr-xr-x root/root 2534 2022-06-12 22:17 ./usr/bin/stag-join -rwxr-xr-x root/root 2552 2022-06-12 22:17 ./usr/bin/stag-merge -rwxr-xr-x root/root 3080 2022-06-12 22:17 ./usr/bin/stag-mogrify -rwxr-xr-x root/root 3464 2022-06-12 22:17 ./usr/bin/stag-parse -rwxr-xr-x root/root 1734 2022-06-12 22:17 ./usr/bin/stag-query -rwxr-xr-x root/root 4091 2022-06-12 22:17 ./usr/bin/stag-splitter -rwxr-xr-x root/root 2082 2022-06-12 22:17 ./usr/bin/stag-view -rwxr-xr-x root/root 413 2022-06-12 22:17 ./usr/bin/stag-xml2itext drwxr-xr-x root/root 0 2022-06-12 22:17 ./usr/share/ drwxr-xr-x root/root 0 2022-06-12 22:17 ./usr/share/doc-base/ -rw-r--r-- root/root 326 2022-06-12 22:17 ./usr/share/doc-base/libdata-stag-perl.libdata-stag-perl-homepage drwxr-xr-x root/root 0 2022-06-12 22:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-06-12 22:17 ./usr/share/doc/libdata-stag-perl/ -rw-r--r-- root/root 1383 2022-06-12 22:17 ./usr/share/doc/libdata-stag-perl/changelog.Debian.gz 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22:51 ./usr/share/doc/libdata-stag-perl/homepage/script-docs/stag-bulkload.html -rw-r--r-- root/root 5654 2009-12-14 22:51 ./usr/share/doc/libdata-stag-perl/homepage/script-docs/stag-db.html -rw-r--r-- root/root 4160 2009-12-14 22:51 ./usr/share/doc/libdata-stag-perl/homepage/script-docs/stag-diff.html -rw-r--r-- root/root 1187 2009-12-14 22:51 ./usr/share/doc/libdata-stag-perl/homepage/script-docs/stag-drawtree.html -rw-r--r-- root/root 609 2009-12-14 22:51 ./usr/share/doc/libdata-stag-perl/homepage/script-docs/stag-elcount.html -rw-r--r-- root/root 634 2009-12-14 22:51 ./usr/share/doc/libdata-stag-perl/homepage/script-docs/stag-eval.html -rw-r--r-- root/root 3461 2009-12-14 22:51 ./usr/share/doc/libdata-stag-perl/homepage/script-docs/stag-filter.html -rw-r--r-- root/root 1638 2009-12-14 22:51 ./usr/share/doc/libdata-stag-perl/homepage/script-docs/stag-findsubtree.html -rw-r--r-- root/root 2299 2009-12-14 22:51 ./usr/share/doc/libdata-stag-perl/homepage/script-docs/stag-flatten.html 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Source-Version: 0.14-3 Space: 4020 Status: successful Version: 0.14-3 -------------------------------------------------------------------------------- Finished at 2024-08-05T13:00:08Z Build needed 00:00:16, 4020k disk space