sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | libbio-primerdesigner-perl 0.07-8 (amd64) Mon, 05 Aug 2024 11:39:51 +0000 | +==============================================================================+ Package: libbio-primerdesigner-perl Version: 0.07-8 Source Version: 0.07-8 Distribution: sid Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-debomatic-4cd0115e-4bea-42fa-9fa7-313340052625' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-primerdesigner-perl_0.07-8 sid amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-primerdesigner-perl_0.07-8 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-primerdesigner-perl-7EHA6J/resolver-0Mw78d' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://deb.debian.org/debian unstable InRelease [198 kB] Get:2 http://deb.debian.org/debian sid InRelease [198 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-08-05-0806.27-F-2024-08-05-0806.27.pdiff [2505 B] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-08-05-0806.27-F-2024-08-05-0806.27.pdiff [2505 B] Get:5 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:6 http://deb.debian.org/debian sid/main Sources T-2024-08-05-0806.27-F-2024-08-05-0806.27.pdiff [25.5 kB] Get:6 http://deb.debian.org/debian sid/main Sources T-2024-08-05-0806.27-F-2024-08-05-0806.27.pdiff [25.5 kB] Fetched 552 kB in 6s (91.7 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-primerdesigner-perl_0.07-8.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-primerdesigner-perl-7EHA6J/libbio-primerdesigner-perl-0.07' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-primerdesigner-perl-7EHA6J' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libmodule-build-perl, build-essential, fakeroot, perl, libwww-perl, libclass-base-perl, libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3, ncbi-epcr Filtered Build-Depends: debhelper-compat (= 13), libmodule-build-perl, build-essential, fakeroot, perl, libwww-perl, libclass-base-perl, libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3, ncbi-epcr dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [781 B] Get:5 copy:/<>/apt_archive ./ Packages [793 B] Fetched 2183 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libclass-base-perl libclone-perl libdebhelper-perl libdevel-symdump-perl libelf1t64 libencode-locale-perl libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmodule-build-perl libnet-http-perl libnet-ssleay-perl libpipeline1 libpod-coverage-perl libpod-parser-perl libreadonly-perl libtest-pod-coverage-perl libtest-pod-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml2 m4 man-db ncbi-epcr netbase openssl perl-openssl-defaults po-debconf primer3 sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl m4-doc apparmor less www-browser bioperl libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libclass-base-perl libclone-perl libdebhelper-perl libdevel-symdump-perl libelf1t64 libencode-locale-perl libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmodule-build-perl libnet-http-perl libnet-ssleay-perl libpipeline1 libpod-coverage-perl libpod-parser-perl libreadonly-perl libtest-pod-coverage-perl libtest-pod-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml2 m4 man-db ncbi-epcr netbase openssl perl-openssl-defaults po-debconf primer3 sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. 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amd64 debhelper all 13.16 [891 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libclass-base-perl all 0.09-2 [17.8 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:44 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unstable/main amd64 libio-socket-ssl-perl all 2.088-1 [222 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libmodule-build-perl all 0.423400-2 [252 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libpod-coverage-perl all 0.23-2 [22.1 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libreadonly-perl all 2.050-3 [23.1 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libtest-pod-coverage-perl all 1.10-3 [14.9 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libtest-pod-perl all 1.52-3 [12.6 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 ncbi-epcr amd64 2.3.12-1-10 [174 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 primer3 amd64 2.6.1-4 [202 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.5 MB in 0s (63.6 MB/s) Selecting previously unselected package netbase. 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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-2) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../59-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libpod-coverage-perl. Preparing to unpack .../60-libpod-coverage-perl_0.23-2_all.deb ... Unpacking libpod-coverage-perl (0.23-2) ... Selecting previously unselected package libreadonly-perl. Preparing to unpack .../61-libreadonly-perl_2.050-3_all.deb ... Unpacking libreadonly-perl (2.050-3) ... Selecting previously unselected package libtest-pod-coverage-perl. Preparing to unpack .../62-libtest-pod-coverage-perl_1.10-3_all.deb ... Unpacking libtest-pod-coverage-perl (1.10-3) ... Selecting previously unselected package libtest-pod-perl. Preparing to unpack .../63-libtest-pod-perl_1.52-3_all.deb ... Unpacking libtest-pod-perl (1.52-3) ... Selecting previously unselected package ncbi-epcr. Preparing to unpack .../64-ncbi-epcr_2.3.12-1-10_amd64.deb ... Unpacking ncbi-epcr (2.3.12-1-10) ... Selecting previously unselected package primer3. Preparing to unpack .../65-primer3_2.6.1-4_amd64.deb ... Unpacking primer3 (2.6.1-4) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../66-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-2) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.16) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libtest-pod-perl (1.52-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up libmodule-build-perl (0.423400-2) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libreadonly-perl (2.050-3) ... Setting up primer3 (2.6.1-4) ... Setting up autotools-dev (20220109.1) ... Setting up libio-html-perl (1.004-3) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.22.5-2) ... Setting up libclass-base-perl (0.09-2) ... Setting up autoconf (2.71-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libdevel-symdump-perl (2.18-5) ... Setting up openssl (3.3.1-2) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up liburi-perl (5.28-1) ... Setting up ncbi-epcr (2.3.12-1-10) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libpod-coverage-perl (0.23-2) ... Setting up libnet-http-perl (6.23-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1) ... Setting up libtest-pod-coverage-perl (1.10-3) ... Setting up libio-socket-ssl-perl (2.088-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Setting up libwww-perl (6.77-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Processing triggers for libc-bin (2.39-6) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-2 bsdutils_1:2.40.2-2 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-4 g++-13-x86-64-linux-gnu_13.3.0-4 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-4 gcc-13-base_13.3.0-4 gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libblkid1_2.40.2-2 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.2.0-1 libclass-base-perl_0.09-2 libclone-perl_0.46-1+b2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdevel-symdump-perl_2.18-5 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libencode-locale-perl_1.05-3 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-listing-perl_6.16-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-4 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.42.90.20240720-2 libhogweed6t64_3.10-1 libhtml-parser-perl_3.83-1 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_6.46-1 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-1 libicu72_72.1-5 libidn2-0_2.3.7-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.088-1 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2 liblsan0_14.2.0-1 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmodule-build-perl_0.423400-2 libmount1_2.40.2-2 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-1+b1 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libpipeline1_1.5.7-2 libpod-coverage-perl_0.23-2 libpod-parser-perl_1.67-1 libquadmath0_14.2.0-1 libreadline8t64_8.2-4 libreadonly-perl_2.050-3 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b3 libsemanage-common_3.5-1 libsemanage2_3.5-1+b4 libsepol2_3.5-2+b1 libsframe1_2.42.90.20240720-2 libsmartcols1_2.40.2-2 libsqlite3-0_3.46.0-1 libssl3t64_3.3.1-2 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 libsystemd0_256.4-2 libtasn1-6_4.19.0-3+b2 libtest-pod-coverage-perl_1.10-3 libtest-pod-perl_1.52-3 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libtsan2_14.2.0-1 libubsan1_14.2.0-1 libuchardet0_0.0.8-1+b1 libudev1_256.4-2 libunistring5_1.2-1 liburi-perl_5.28-1 libuuid1_2.40.2-2 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.9.12-1 locales-all_2.39-6 login_1:4.15.3-3 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 ncbi-epcr_2.3.12-1-10 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.1-2 passwd_1:4.15.3-3 patch_2.7.6-7 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 perl-openssl-defaults_7+b2 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 primer3_2.6.1-4 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-2 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-primerdesigner-perl Binary: libbio-primerdesigner-perl Architecture: all Version: 0.07-8 Maintainer: Debian Perl Group Uploaders: gregor herrmann , Charles Plessy Homepage: https://metacpan.org/release/Bio-PrimerDesigner Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-primerdesigner-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-primerdesigner-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libmodule-build-perl Build-Depends-Indep: perl, libwww-perl, libclass-base-perl, libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3, ncbi-epcr Package-List: libbio-primerdesigner-perl deb perl 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libbio-primerdesigner-perl_0.07-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build.pl-getopt-long.patch dpkg-source: info: applying no-hash-manipulation-inside-each.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-primerdesigner-perl_0.07-8 sid amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-primerdesigner-perl_0.07-8 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=sid-amd64-debomatic SCHROOT_CHROOT_NAME=sid-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=sid-amd64-debomatic-4cd0115e-4bea-42fa-9fa7-313340052625 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-primerdesigner-perl dpkg-buildpackage: info: source version 0.07-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=perl_build dh_auto_clean -O--buildsystem=perl_build dh_autoreconf_clean -O--buildsystem=perl_build dh_clean -O--buildsystem=perl_build dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-primerdesigner-perl using existing ./libbio-primerdesigner-perl_0.07.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libbio-primerdesigner-perl in libbio-primerdesigner-perl_0.07-8.debian.tar.xz dpkg-source: info: building libbio-primerdesigner-perl in libbio-primerdesigner-perl_0.07-8.dsc debian/rules binary dh binary --buildsystem=perl_build dh_update_autotools_config -O--buildsystem=perl_build dh_autoreconf -O--buildsystem=perl_build dh_auto_configure -O--buildsystem=perl_build /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Use of uninitialized value $url in concatenation (.) or string at Build.PL line 62, <$in_fh> line 42. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-PrimerDesigner' version '0.04' Now run './Build' and './Build install' dh_auto_build -O--buildsystem=perl_build /usr/bin/perl Build Building Bio-PrimerDesigner debian/rules override_dh_auto_test make[1]: Entering directory '/<>' RES_OPTIONS=attempts:0 dh_auto_test -- --test_files "t/epcr.t t/pod-coverage.t t/pod.t t/primer3.t t/primer_designer.t t/result.t t/tables.t" /usr/bin/perl Build test --verbose 1 --test_files "t/epcr.t t/pod-coverage.t t/pod.t t/primer3.t t/primer_designer.t t/result.t t/tables.t" Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. t/epcr.t ............. 1..8 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - 'program' isa 'Bio::PrimerDesigner::epcr' ok 4 - binary_name is "e-PCR" ok 5 - program returns params ok 6 - program returns no aliases ok 7 - e-PCR verification fails with no args ok 8 - run method fails with no arguments ok t/pod-coverage.t ..... 1..8 ok 1 - Pod coverage on Bio::PrimerDesigner ok 2 - Pod coverage on Bio::PrimerDesigner::Result ok 3 - Pod coverage on Bio::PrimerDesigner::Config ok 4 - Pod coverage on Bio::PrimerDesigner::Tables ok 5 - Pod coverage on Bio::PrimerDesigner::Remote ok 6 - Pod coverage on Bio::PrimerDesigner::primer3 ok 7 - Pod coverage on Bio::PrimerDesigner::ispcr ok 8 - Pod coverage on Bio::PrimerDesigner::epcr ok t/pod.t .............. 1..9 ok 1 - POD test for blib/lib/Bio/PrimerDesigner.pm ok 2 - POD test for blib/lib/Bio/PrimerDesigner/Result.pm ok 3 - POD test for blib/lib/Bio/PrimerDesigner/Config.pm ok 4 - POD test for blib/lib/Bio/PrimerDesigner/Tables.pm ok 5 - POD test for blib/lib/Bio/PrimerDesigner/Remote.pm ok 6 - POD test for blib/lib/Bio/PrimerDesigner/primer3.pm ok 7 - POD test for blib/lib/Bio/PrimerDesigner/ispcr.pm ok 8 - POD test for blib/lib/Bio/PrimerDesigner/epcr.pm ok 9 - POD test for blib/script/primer_designer ok Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. t/primer3.t .......... 1..7 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - 'program' isa 'Bio::PrimerDesigner::primer3' ok 4 - binary_name is "primer3" ok 5 - program returns params ok 6 - program returns aliases ok 7 - design method fails without arguments ok Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. t/primer_designer.t .. 1..22 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - An object of class 'Bio::PrimerDesigner::primer3' isa 'Bio::PrimerDesigner::primer3' ok 4 - Default method for unix-like OS is "local" ok 5 - Default binary path for unix-like OS is "/usr/local/bin" ok 6 - binary_path set to "/bin" ok 7 - binary_path rejects bad arg ok 8 - Error message set ok 9 - binary_path remembers last good arg ok 10 - 'object with args' isa 'Bio::PrimerDesigner' ok 11 - method is "remote" ok 12 - url is "https://www.google.com/" ok 13 - An object of class 'Bio::PrimerDesigner::epcr' isa 'Bio::PrimerDesigner::epcr' ok 14 - method set to "remote" ok 15 - method rejects bad arg ok 16 - Error message set ok 17 - method remembers last good arg ok 18 - url set to "http://www.google.com" ok 19 - 'program' isa 'Bio::PrimerDesigner::epcr' ok 20 - program rejects bad arg ok 21 - Error message set ok 22 - 'program still' isa 'Bio::PrimerDesigner::epcr' ok Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. t/result.t ........... 1..3 ok 1 - use Bio::PrimerDesigner; ok 2 # skip Can't get remote server call to work ok 3 # skip Can't get remote server call to work ok Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /<>/blib/lib/Bio/PrimerDesigner.pm line 244. t/tables.t ........... 1..10 ok 1 - use Bio::PrimerDesigner::Tables; ok 2 - An object of class 'Bio::PrimerDesigner::Tables' isa 'Bio::PrimerDesigner::Tables' ok 3 # skip Can't get remote server call to work ok 4 # skip Can't get remote server call to work ok 5 # skip Can't get remote server call to work ok 6 # skip Can't get remote server call to work ok 7 # skip Can't get remote server call to work ok 8 # skip Can't get remote server call to work ok 9 # skip Can't get remote server call to work ok 10 # skip Can't get remote server call to work ok All tests successful. Files=7, Tests=67, 1 wallclock secs ( 0.03 usr 0.02 sys + 0.63 cusr 0.10 csys = 0.78 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=perl_build dh_prep -O--buildsystem=perl_build debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install /usr/bin/perl Build install --destdir /<>/debian/libbio-primerdesigner-perl --create_packlist 0 Building Bio-PrimerDesigner Installing /<>/debian/libbio-primerdesigner-perl/usr/share/man/man1/primer_designer.1p Installing /<>/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner.pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Result.pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Config.pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Tables.pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Remote.pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/primer3.pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/ispcr.pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/epcr.pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::ispcr.3pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Tables.3pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Result.3pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::primer3.3pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner.3pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::epcr.3pm Installing /<>/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Remote.3pm Installing /<>/debian/libbio-primerdesigner-perl/usr/bin/primer_designer # remove empty manpage without whatis entry rm -f -v /<>/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm removed '/<>/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm' make[1]: Leaving directory '/<>' dh_installdocs -O--buildsystem=perl_build dh_installchangelogs -O--buildsystem=perl_build dh_installman -O--buildsystem=perl_build dh_installsystemduser -O--buildsystem=perl_build dh_perl -O--buildsystem=perl_build dh_link -O--buildsystem=perl_build dh_strip_nondeterminism -O--buildsystem=perl_build dh_compress -O--buildsystem=perl_build dh_fixperms -O--buildsystem=perl_build dh_missing -O--buildsystem=perl_build dh_installdeb -O--buildsystem=perl_build dh_gencontrol -O--buildsystem=perl_build dh_md5sums -O--buildsystem=perl_build dh_builddeb -O--buildsystem=perl_build dpkg-deb: building package 'libbio-primerdesigner-perl' in '../libbio-primerdesigner-perl_0.07-8_all.deb'. dpkg-genbuildinfo -O../libbio-primerdesigner-perl_0.07-8_amd64.buildinfo dpkg-genchanges -O../libbio-primerdesigner-perl_0.07-8_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-05T11:40:14Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-primerdesigner-perl_0.07-8_amd64.changes: ------------------------------------------------ Format: 1.8 Date: Mon, 16 Nov 2020 12:51:28 +0100 Source: libbio-primerdesigner-perl Binary: libbio-primerdesigner-perl Architecture: source all Version: 0.07-8 Distribution: sid Urgency: medium Maintainer: Debian Perl Group Changed-By: Andreas Tille Description: libbio-primerdesigner-perl - Perl module to design PCR primers using primer3 and epcr Changes: libbio-primerdesigner-perl (0.07-8) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 29b22fc116c61b0d7c23ca124b34cae82ddedca2 1489 libbio-primerdesigner-perl_0.07-8.dsc 8f6dd9dc27f786f14619042645e6c0dfa28f72f7 5764 libbio-primerdesigner-perl_0.07-8.debian.tar.xz 52420ef8841460a4ee5459ebec0b5cdcabdaf495 37700 libbio-primerdesigner-perl_0.07-8_all.deb d6913ab83c6088b66cf5513889aa3fd62095693b 6306 libbio-primerdesigner-perl_0.07-8_amd64.buildinfo Checksums-Sha256: 9663ad0c22fa4d8f22236ea891c5d4d852301b3e680affb577b0169516330bce 1489 libbio-primerdesigner-perl_0.07-8.dsc 018a5b48ae52a08b1cf0c351c5e1531adb41490726d116d60a6d6e74af34a412 5764 libbio-primerdesigner-perl_0.07-8.debian.tar.xz c517e77ed5d4b106527c3ab6eb03ebff6480c1de71185e99c4399d2276ae003f 37700 libbio-primerdesigner-perl_0.07-8_all.deb b667796e4b8d707c6815a6de789d04c15f0adb216ce8f924a4eccacad31a0c28 6306 libbio-primerdesigner-perl_0.07-8_amd64.buildinfo Files: acb3362a0a374877b3cc6bf6c270c05a 1489 perl optional libbio-primerdesigner-perl_0.07-8.dsc 10941279ea99fdcb92a2050edf6331e5 5764 perl optional libbio-primerdesigner-perl_0.07-8.debian.tar.xz 2293aff56ce7a890744ba06cdc73cede 37700 perl optional libbio-primerdesigner-perl_0.07-8_all.deb f31ca7de209a8b1043bd42b1ac824f7e 6306 perl optional libbio-primerdesigner-perl_0.07-8_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-primerdesigner-perl Binary: libbio-primerdesigner-perl Architecture: all source Version: 0.07-8 Checksums-Md5: acb3362a0a374877b3cc6bf6c270c05a 1489 libbio-primerdesigner-perl_0.07-8.dsc 2293aff56ce7a890744ba06cdc73cede 37700 libbio-primerdesigner-perl_0.07-8_all.deb Checksums-Sha1: 29b22fc116c61b0d7c23ca124b34cae82ddedca2 1489 libbio-primerdesigner-perl_0.07-8.dsc 52420ef8841460a4ee5459ebec0b5cdcabdaf495 37700 libbio-primerdesigner-perl_0.07-8_all.deb Checksums-Sha256: 9663ad0c22fa4d8f22236ea891c5d4d852301b3e680affb577b0169516330bce 1489 libbio-primerdesigner-perl_0.07-8.dsc c517e77ed5d4b106527c3ab6eb03ebff6480c1de71185e99c4399d2276ae003f 37700 libbio-primerdesigner-perl_0.07-8_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 05 Aug 2024 11:40:14 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), binutils-x86-64-linux-gnu (= 2.42.90.20240720-2), bsdextrautils (= 2.40.2-2), bsdutils (= 1:2.40.2-2), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-4), cpp-13-x86-64-linux-gnu (= 13.3.0-4), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-4), gcc-13-base (= 13.3.0-4), gcc-13-x86-64-linux-gnu (= 13.3.0-4), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.42.90.20240720-2), libblkid1 (= 2.40.2-2), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-1), libclass-base-perl (= 0.09-2), libclone-perl (= 0.46-1+b2), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdevel-symdump-perl (= 2.18-5), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libencode-locale-perl (= 1.05-3), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.42.90.20240720-2), libhtml-parser-perl (= 3.83-1), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.46-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.088-1), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-1), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmodule-build-perl (= 0.423400-2), libmount1 (= 2.40.2-2), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-5), libpipeline1 (= 1.5.7-2), libpod-coverage-perl (= 0.23-2), libpod-parser-perl (= 1.67-1), libquadmath0 (= 14.2.0-1), libreadonly-perl (= 2.050-3), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsmartcols1 (= 2.40.2-2), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsystemd0 (= 256.4-2), libtest-pod-coverage-perl (= 1.10-3), libtest-pod-perl (= 1.52-3), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), liburi-perl (= 5.28-1), libuuid1 (= 2.40.2-2), libwww-perl (= 6.77-1), libwww-robotrules-perl (= 6.02-1), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncbi-epcr (= 2.3.12-1-10), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl (= 3.3.1-2), patch (= 2.7.6-7), perl (= 5.38.2-5), perl-base (= 5.38.2-5), perl-modules-5.38 (= 5.38.2-5), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), primer3 (= 2.6.1-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-2), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1605527488" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-primerdesigner-perl_0.07-8_all.deb ----------------------------------------- new Debian package, version 2.0. size 37700 bytes: control archive=1220 bytes. 705 bytes, 14 lines control 1542 bytes, 19 lines md5sums Package: libbio-primerdesigner-perl Version: 0.07-8 Architecture: all Maintainer: Debian Perl Group Installed-Size: 121 Depends: perl:any, libwww-perl, libclass-base-perl, libreadonly-perl, primer3, ncbi-epcr Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-PrimerDesigner Description: Perl module to design PCR primers using primer3 and epcr Bio::PrimerDesigner provides a low-level interface to the primer3 and epcr binary executables and supplies methods to return the results. In addition to accessing local installations of primer3 or e-PCR, it also offers the ability to accessing the primer3 binary via a remote server. drwxr-xr-x root/root 0 2020-11-16 11:51 ./ drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/ drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/bin/ -rwxr-xr-x root/root 17720 2020-11-16 11:51 ./usr/bin/primer_designer drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/share/ drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/share/doc/libbio-primerdesigner-perl/ -rw-r--r-- root/root 928 2020-11-16 11:51 ./usr/share/doc/libbio-primerdesigner-perl/changelog.Debian.gz -rw-r--r-- root/root 1644 2020-11-16 11:51 ./usr/share/doc/libbio-primerdesigner-perl/copyright drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/share/man/man1/ -rw-r--r-- root/root 1753 2020-11-16 11:51 ./usr/share/man/man1/primer_designer.1p.gz drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/share/man/man3/ -rw-r--r-- root/root 2411 2020-11-16 11:51 ./usr/share/man/man3/Bio::PrimerDesigner.3pm.gz -rw-r--r-- root/root 1603 2020-11-16 11:51 ./usr/share/man/man3/Bio::PrimerDesigner::Remote.3pm.gz -rw-r--r-- root/root 2408 2020-11-16 11:51 ./usr/share/man/man3/Bio::PrimerDesigner::Result.3pm.gz -rw-r--r-- root/root 2168 2020-11-16 11:51 ./usr/share/man/man3/Bio::PrimerDesigner::Tables.3pm.gz -rw-r--r-- root/root 1996 2020-11-16 11:51 ./usr/share/man/man3/Bio::PrimerDesigner::epcr.3pm.gz -rw-r--r-- root/root 2015 2020-11-16 11:51 ./usr/share/man/man3/Bio::PrimerDesigner::ispcr.3pm.gz -rw-r--r-- root/root 1902 2020-11-16 11:51 ./usr/share/man/man3/Bio::PrimerDesigner::primer3.3pm.gz drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/share/perl5/ drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/share/perl5/Bio/ -rw-r--r-- root/root 9917 2020-11-16 11:51 ./usr/share/perl5/Bio/PrimerDesigner.pm drwxr-xr-x root/root 0 2020-11-16 11:51 ./usr/share/perl5/Bio/PrimerDesigner/ -rw-r--r-- root/root 1028 2020-11-16 11:51 ./usr/share/perl5/Bio/PrimerDesigner/Config.pm -rw-r--r-- root/root 3595 2020-11-16 11:51 ./usr/share/perl5/Bio/PrimerDesigner/Remote.pm -rw-r--r-- root/root 6284 2020-11-16 11:51 ./usr/share/perl5/Bio/PrimerDesigner/Result.pm -rw-r--r-- root/root 7986 2020-11-16 11:51 ./usr/share/perl5/Bio/PrimerDesigner/Tables.pm -rw-r--r-- root/root 8724 2020-11-16 11:51 ./usr/share/perl5/Bio/PrimerDesigner/epcr.pm -rw-r--r-- root/root 8808 2020-11-16 11:51 ./usr/share/perl5/Bio/PrimerDesigner/ispcr.pm -rw-r--r-- root/root 18726 2020-11-16 11:51 ./usr/share/perl5/Bio/PrimerDesigner/primer3.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 944 Build-Time: 4 Distribution: sid Host Architecture: amd64 Install-Time: 9 Job: /srv/debomatic/incoming/libbio-primerdesigner-perl_0.07-8.dsc Machine Architecture: amd64 Package: libbio-primerdesigner-perl Package-Time: 23 Source-Version: 0.07-8 Space: 944 Status: successful Version: 0.07-8 -------------------------------------------------------------------------------- Finished at 2024-08-05T11:40:14Z Build needed 00:00:23, 944k disk space