sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | libbio-featureio-perl 1.6.905-2 (amd64) Mon, 05 Aug 2024 11:36:29 +0000 | +==============================================================================+ Package: libbio-featureio-perl Version: 1.6.905-2 Source Version: 1.6.905-2 Distribution: sid Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-debomatic-8414ae58-17b5-464d-9385-cd1783d4b777' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-featureio-perl_1.6.905-2 sid amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-featureio-perl_1.6.905-2 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-featureio-perl-G07y2U/resolver-89dQmY' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://deb.debian.org/debian unstable InRelease [198 kB] Get:2 http://deb.debian.org/debian sid InRelease [198 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-08-05-0806.27-F-2024-08-05-0806.27.pdiff [2505 B] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-08-05-0806.27-F-2024-08-05-0806.27.pdiff [2505 B] Get:5 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:6 http://deb.debian.org/debian sid/main Sources T-2024-08-05-0806.27-F-2024-08-05-0806.27.pdiff [25.5 kB] Get:6 http://deb.debian.org/debian sid/main Sources T-2024-08-05-0806.27-F-2024-08-05-0806.27.pdiff [25.5 kB] Fetched 552 kB in 6s (92.7 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-featureio-perl_1.6.905-2.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-featureio-perl-G07y2U/libbio-featureio-perl-1.6.905' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-featureio-perl-G07y2U' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), build-essential, fakeroot, libbio-perl-perl, libscalar-list-utils-perl, libtest-simple-perl, libtest-most-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl, perl Filtered Build-Depends: debhelper-compat (= 12), build-essential, fakeroot, libbio-perl-perl, libscalar-list-utils-perl, libtest-simple-perl, libtest-most-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [803 B] Get:5 copy:/<>/apt_archive ./ Packages [815 B] Fetched 2227 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libfakeroot libfile-listing-perl libfile-slurp-tiny-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtree-dagnode-perl libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-dom-perl libxml-dom-xpath-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-xpathengine-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libfakeroot libfile-listing-perl libfile-slurp-tiny-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtree-dagnode-perl libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-dom-perl libxml-dom-xpath-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-xpathengine-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 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[26.4 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libfile-slurp-tiny-perl all 0.004-2 [7592 B] Get:51 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1 [99.4 kB] Get:54 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Preparing to unpack .../48-libfile-slurp-tiny-perl_0.004-2_all.deb ... Unpacking libfile-slurp-tiny-perl (0.004-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../49-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../50-liburi-perl_5.28-1_all.deb ... Unpacking liburi-perl (5.28-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../51-libhtml-parser-perl_3.83-1_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../52-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../53-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../54-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../55-libhttp-message-perl_6.46-1_all.deb ... Unpacking libhttp-message-perl (6.46-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../56-libhttp-cookies-perl_6.11-1_all.deb ... Unpacking libhttp-cookies-perl (6.11-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../57-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../58-perl-openssl-defaults_7+b2_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:amd64. 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Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../65-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../66-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../67-libtest-deep-perl_1.204-1_all.deb ... Unpacking libtest-deep-perl (1.204-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../68-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../69-libtest-differences-perl_0.71-1_all.deb ... Unpacking libtest-differences-perl (0.71-1) ... Selecting previously unselected package libtest-exception-perl. 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Preparing to unpack .../76-libxml-regexp-perl_0.04-1.1_all.deb ... Unpacking libxml-regexp-perl (0.04-1.1) ... Selecting previously unselected package libxml-dom-perl. Preparing to unpack .../77-libxml-dom-perl_1.46-2_all.deb ... Unpacking libxml-dom-perl (1.46-2) ... Selecting previously unselected package libxml-xpathengine-perl. Preparing to unpack .../78-libxml-xpathengine-perl_0.14-2_all.deb ... Unpacking libxml-xpathengine-perl (0.14-2) ... Selecting previously unselected package libxml-dom-xpath-perl. Preparing to unpack .../79-libxml-dom-xpath-perl_0.14-4_all.deb ... Unpacking libxml-dom-xpath-perl (0.14-4) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../80-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-2) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libxml-regexp-perl (0.04-1.1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.16) ... Setting up libfile-slurp-tiny-perl (0.004-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libxml-xpathengine-perl (0.14-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.71-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libtree-dagnode-perl (1.32-1) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.3.1-2) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up liburi-perl (5.28-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1) ... Setting up libio-socket-ssl-perl (2.088-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b2) ... Setting up libxml-perl (0.08-4) ... Setting up libxml-dom-perl (1.46-2) ... Setting up libxml-dom-xpath-perl (0.14-4) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-2 bsdutils_1:2.40.2-2 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-4 g++-13-x86-64-linux-gnu_13.3.0-4 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-4 gcc-13-base_13.3.0-4 gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libalgorithm-diff-perl_1.201-1 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libbio-perl-perl_1.7.8-1 libblkid1_2.40.2-2 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcapture-tiny-perl_0.48-2 libcc1-0_14.2.0-1 libclass-data-inheritable-perl_0.08-3 libclone-perl_0.46-1+b2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1 libexpat1_2.6.2-1 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-listing-perl_6.16-1 libfile-slurp-tiny-perl_0.004-2 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-4 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.42.90.20240720-2 libhogweed6t64_3.10-1 libhtml-parser-perl_3.83-1 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_6.46-1 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-1 libicu72_72.1-5 libidn2-0_2.3.7-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.088-1 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2 liblsan0_14.2.0-1 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-2 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-1+b1 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libpipeline1_1.5.7-2 libquadmath0_14.2.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b3 libsemanage-common_3.5-1 libsemanage2_3.5-1+b4 libsepol2_3.5-2+b1 libsframe1_2.42.90.20240720-2 libsmartcols1_2.40.2-2 libsqlite3-0_3.46.0-1 libssl3t64_3.3.1-2 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 libsub-uplevel-perl_0.2800-3 libsystemd0_256.4-2 libtasn1-6_4.19.0-3+b2 libtest-deep-perl_1.204-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-2 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtree-dagnode-perl_1.32-1 libtry-tiny-perl_0.31-2 libtsan2_14.2.0-1 libubsan1_14.2.0-1 libuchardet0_0.0.8-1+b1 libudev1_256.4-2 libunistring5_1.2-1 liburi-perl_5.28-1 libuuid1_2.40.2-2 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-dom-perl_1.46-2 libxml-dom-xpath-perl_0.14-4 libxml-parser-perl_2.47-1+b2 libxml-perl_0.08-4 libxml-regexp-perl_0.04-1.1 libxml-xpathengine-perl_0.14-2 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.9.12-1 locales-all_2.39-6 login_1:4.15.3-3 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.1-2 passwd_1:4.15.3-3 patch_2.7.6-7 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 perl-openssl-defaults_7+b2 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-2 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-featureio-perl Binary: libbio-featureio-perl Architecture: all Version: 1.6.905-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-FeatureIO Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/libbio-featureio-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-featureio-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 12) Build-Depends-Indep: libbio-perl-perl, libscalar-list-utils-perl, libtest-simple-perl, libtest-most-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl, perl Package-List: libbio-featureio-perl deb perl optional arch=all Checksums-Sha1: 13fea9d01472288a281cc7251951ee068fb283db 54906 libbio-featureio-perl_1.6.905.orig.tar.gz 45a1b10d1dfc0b8c391e9ecf7d923428eb8b5da1 2044 libbio-featureio-perl_1.6.905-2.debian.tar.xz Checksums-Sha256: 322e5757b374f2fb90b8f20bdbdc75631f5cb4d122f81a4d35c3a177cf950c7a 54906 libbio-featureio-perl_1.6.905.orig.tar.gz bc047910dd0709363552e88f6323aaaf09be2aba7401fe943b1eba76b94a687f 2044 libbio-featureio-perl_1.6.905-2.debian.tar.xz Files: 7e455995c0a9cff706f43b1412dfdb9c 54906 libbio-featureio-perl_1.6.905.orig.tar.gz 5cd2dcb01402b65d4303d5385f2d9954 2044 libbio-featureio-perl_1.6.905-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl4cJYwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGyKQ//YgapUIltkS+bplEEt9pkn5R+g6hK7zZY H27PhfFKt6rpYgXXu6BYvJzAVfOZ30SFdqVfrEe/tPj5dtumcxtPKONNUZCasa/p zpEIjKa0MMoO7BdqOpSPh0HaEz1jB6f6bYi/YO1fWq3M3yeRP28F0AXTKgByLeDa zeRwiK3ppthEAxeifXNuF0emGw30XZjsR/I3dUeTKMavx/rlFWPrQwze/EScAodi DeHUcJVCf6++wmqCUjSNKQsHcOUvY4g5FnAAT3FCwE11VyyeYadxEoXyMf6vOqh4 jnrf+blr5hvRiIQy7GZWVrievniro44CZ+XLQlgVY6SfRa2kZ3SfCCrJaKJ03M7p GDiW6U2uEtuVXuMS+i0Js2I5huujFKdzlHf/jPmp3lCe7+KQP9PTKQssca7oIdeo dhTcD3rIRmbBEFnW5BLVLxgMto+9XvA7px9wz1zQF7sbnumFhWCZQc5KFvmSZ1Vh Gfim1TownM9KEfnJ01kGaPXyLLkNmJuVuPTaMUzeHBLQzU935WuhXKLQxKpNdBdZ EGNA3NaH+8NsXK/eMnhcEumdjC+nnzlBauLefPAM7ogb3T+3LH9M3Q16wcchzpMl MKv0fVMG8MC3JiU2/M76DvPsCMYsI109X/1tw+CAxZvzr9QuQ6fPdxpIfs1X0RWw Vu844SjUfIc= =Xt8x -----END PGP SIGNATURE----- gpgv: Signature made Mon Jan 13 08:08:44 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-featureio-perl_1.6.905-2.dsc: no acceptable signature found dpkg-source: info: extracting libbio-featureio-perl in /<> dpkg-source: info: unpacking libbio-featureio-perl_1.6.905.orig.tar.gz dpkg-source: info: unpacking libbio-featureio-perl_1.6.905-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-featureio-perl_1.6.905-2 sid amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-featureio-perl_1.6.905-2 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=sid-amd64-debomatic SCHROOT_CHROOT_NAME=sid-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=sid-amd64-debomatic-8414ae58-17b5-464d-9385-cd1783d4b777 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-featureio-perl dpkg-buildpackage: info: source version 1.6.905-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-featureio-perl using existing ./libbio-featureio-perl_1.6.905.orig.tar.gz dpkg-source: info: building libbio-featureio-perl in libbio-featureio-perl_1.6.905-2.debian.tar.xz dpkg-source: info: building libbio-featureio-perl in libbio-featureio-perl_1.6.905-2.dsc debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::FeatureIO Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/FeatureIO/gff.pm blib/lib/Bio/FeatureIO/gff.pm cp lib/Bio/FeatureIO/interpro.pm blib/lib/Bio/FeatureIO/interpro.pm cp lib/Bio/FeatureIO.pm blib/lib/Bio/FeatureIO.pm cp lib/Bio/SeqFeature/Annotated.pm blib/lib/Bio/SeqFeature/Annotated.pm cp lib/Bio/FeatureIO/vecscreen_simple.pm blib/lib/Bio/FeatureIO/vecscreen_simple.pm cp lib/Bio/FeatureIO/bed.pm blib/lib/Bio/FeatureIO/bed.pm cp lib/Bio/FeatureIO/gtf.pm blib/lib/Bio/FeatureIO/gtf.pm cp lib/Bio/FeatureIO/ptt.pm blib/lib/Bio/FeatureIO/ptt.pm Manifying 8 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/release-SeqFeature/*.t t/00-compile.t .................... 1..8 ok 1 - Bio/FeatureIO.pm loaded ok ok 2 - Bio/FeatureIO/bed.pm loaded ok ok 3 - Bio/FeatureIO/gff.pm loaded ok ok 4 - Bio/FeatureIO/gtf.pm loaded ok ok 5 - Bio/FeatureIO/interpro.pm loaded ok ok 6 - Bio/FeatureIO/ptt.pm loaded ok ok 7 - Bio/FeatureIO/vecscreen_simple.pm loaded ok ok 8 - Bio/SeqFeature/Annotated.pm loaded ok ok t/bed.t ........................... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 1..7 ok t/FeatureIO.t ..................... ok 1 - use Bio::FeatureIO; ok 2 - use Bio::FeatureIO::gff; ok 3 - use Bio::FeatureIO::ptt; ok 4 - use Bio::FeatureIO::vecscreen_simple; ok 5 - use Bio::SeqFeature::Annotated; 1..5 ok t/gff.t ........................... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 - An object of class 'Bio::SeqFeature::Annotated' isa 'Bio::SeqFeatureI' ok 8 - An object of class 'Bio::SeqFeature::Annotated' isa 'Bio::SeqFeature::Annotated' ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 not ok 122 # TODO Add clustering groups based on grouping within the file # Failed (TODO) test at t/gff.t line 366. 1..122 ok t/ptt.t ........................... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 - ptt file 1..11 ok t/release-mojibake.t .............. skipped: these tests are for release candidate testing t/release-pod-coverage.t .......... skipped: these tests are for release candidate testing t/release-pod-syntax.t ............ skipped: these tests are for release candidate testing t/release-SeqFeature/Annotated.t .. skipped: these tests are for release candidate testing t/vecscreen.t ..................... ok 1 ok 2 - vecscreen_simple gets the correct features 1..2 ok All tests successful. Files=10, Tests=155, 2 wallclock secs ( 0.04 usr 0.01 sys + 1.24 cusr 0.27 csys = 1.56 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install --destdir=debian/libbio-featureio-perl/ make -j2 install DESTDIR=/<>/debian/libbio-featureio-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 8 pod documents Installing /<>/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO.pm Installing /<>/debian/libbio-featureio-perl/usr/share/perl5/Bio/SeqFeature/Annotated.pm Installing /<>/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/interpro.pm Installing /<>/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/gff.pm Installing /<>/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/ptt.pm Installing /<>/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/gtf.pm Installing /<>/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/vecscreen_simple.pm Installing /<>/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/bed.pm Installing /<>/debian/libbio-featureio-perl/usr/share/man/man3/Bio::SeqFeature::Annotated.3pm Installing /<>/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::gtf.3pm Installing /<>/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::vecscreen_simple.3pm Installing /<>/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::ptt.3pm Installing /<>/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO.3pm Installing /<>/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::gff.3pm Installing /<>/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::bed.3pm Installing /<>/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::interpro.3pm make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-featureio-perl' in '../libbio-featureio-perl_1.6.905-2_all.deb'. dpkg-genbuildinfo -O../libbio-featureio-perl_1.6.905-2_amd64.buildinfo dpkg-genchanges -O../libbio-featureio-perl_1.6.905-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-05T11:36:49Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-featureio-perl_1.6.905-2_amd64.changes: ---------------------------------------------- Format: 1.8 Date: Mon, 13 Jan 2020 09:01:02 +0100 Source: libbio-featureio-perl Binary: libbio-featureio-perl Architecture: source all Version: 1.6.905-2 Distribution: sid Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-featureio-perl - Modules for reading, writing, and manipulating sequence features Changes: libbio-featureio-perl (1.6.905-2) unstable; urgency=medium . * Team upload * Source-only upload to allow testing migration Checksums-Sha1: 139d8a0ad1f91a13c64d87f2f324eace98511fa4 1417 libbio-featureio-perl_1.6.905-2.dsc dbd58ac5a25ea76bbeab343c802f83a7527b45d4 2052 libbio-featureio-perl_1.6.905-2.debian.tar.xz 292118ae3859728f913797de402eca546aa61cee 50984 libbio-featureio-perl_1.6.905-2_all.deb c1b3f35b9fcb95717bd43fedd8e210c4eaa1f827 6769 libbio-featureio-perl_1.6.905-2_amd64.buildinfo Checksums-Sha256: 9723422d106fcffc0e214321f451c74efeb9bbcd8bb69ec43af388eb5efc8427 1417 libbio-featureio-perl_1.6.905-2.dsc c7d650d8c5d41197c0c4fa6fa0d62245bb001f9a59cce2e1f04188257d613159 2052 libbio-featureio-perl_1.6.905-2.debian.tar.xz 3124f7dd5e8c509d0d07dab8986a59d5b21d5839b29b31ce28f560d635c1fe62 50984 libbio-featureio-perl_1.6.905-2_all.deb 7e521fe18bbab039dd685d3990f28c056afcf810e973382c884015ad04151d01 6769 libbio-featureio-perl_1.6.905-2_amd64.buildinfo Files: 0162f30c35772eebbbefd034b9640406 1417 science optional libbio-featureio-perl_1.6.905-2.dsc 50e5bf0321094ef7e9bb07d55bb06597 2052 science optional libbio-featureio-perl_1.6.905-2.debian.tar.xz 5d42b645a053bd7c18c37cc879c5a911 50984 perl optional libbio-featureio-perl_1.6.905-2_all.deb 4b58ddb2c1773d0b643009ae9eda9673 6769 science optional libbio-featureio-perl_1.6.905-2_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-featureio-perl Binary: libbio-featureio-perl Architecture: all source Version: 1.6.905-2 Checksums-Md5: 0162f30c35772eebbbefd034b9640406 1417 libbio-featureio-perl_1.6.905-2.dsc 5d42b645a053bd7c18c37cc879c5a911 50984 libbio-featureio-perl_1.6.905-2_all.deb Checksums-Sha1: 139d8a0ad1f91a13c64d87f2f324eace98511fa4 1417 libbio-featureio-perl_1.6.905-2.dsc 292118ae3859728f913797de402eca546aa61cee 50984 libbio-featureio-perl_1.6.905-2_all.deb Checksums-Sha256: 9723422d106fcffc0e214321f451c74efeb9bbcd8bb69ec43af388eb5efc8427 1417 libbio-featureio-perl_1.6.905-2.dsc 3124f7dd5e8c509d0d07dab8986a59d5b21d5839b29b31ce28f560d635c1fe62 50984 libbio-featureio-perl_1.6.905-2_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 05 Aug 2024 11:36:49 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), binutils-x86-64-linux-gnu (= 2.42.90.20240720-2), bsdextrautils (= 2.40.2-2), bsdutils (= 1:2.40.2-2), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-4), cpp-13-x86-64-linux-gnu (= 13.3.0-4), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-4), gcc-13-base (= 13.3.0-4), gcc-13-x86-64-linux-gnu (= 13.3.0-4), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.42.90.20240720-2), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.40.2-2), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcapture-tiny-perl (= 0.48-2), libcc1-0 (= 14.2.0-1), libclass-data-inheritable-perl (= 0.08-3), libclone-perl (= 0.46-1+b2), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdevel-stacktrace-perl (= 2.0500-1), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libencode-locale-perl (= 1.05-3), libexception-class-perl (= 1.45-1), libexpat1 (= 2.6.2-1), libfile-listing-perl (= 6.16-1), libfile-slurp-tiny-perl (= 0.004-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.42.90.20240720-2), libhtml-parser-perl (= 3.83-1), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.46-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.088-1), libio-string-perl (= 1.08-4), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-1), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-2), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-5), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.2.0-1), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsmartcols1 (= 2.40.2-2), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 256.4-2), libtest-deep-perl (= 1.204-1), libtest-differences-perl (= 0.71-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtree-dagnode-perl (= 1.32-1), libtry-tiny-perl (= 0.31-2), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), liburi-perl (= 5.28-1), libuuid1 (= 2.40.2-2), libwww-perl (= 6.77-1), libwww-robotrules-perl (= 6.02-1), libxml-dom-perl (= 1.46-2), libxml-dom-xpath-perl (= 0.14-4), libxml-parser-perl (= 2.47-1+b2), libxml-perl (= 0.08-4), libxml-regexp-perl (= 0.04-1.1), libxml-xpathengine-perl (= 0.14-2), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl (= 3.3.1-2), patch (= 2.7.6-7), perl (= 5.38.2-5), perl-base (= 5.38.2-5), perl-modules-5.38 (= 5.38.2-5), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-2), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1578902462" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-featureio-perl_1.6.905-2_all.deb --------------------------------------- new Debian package, version 2.0. size 50984 bytes: control archive=1564 bytes. 1500 bytes, 28 lines control 1502 bytes, 19 lines md5sums Package: libbio-featureio-perl Version: 1.6.905-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 145 Depends: perl:any, libbio-perl-perl, libscalar-list-utils-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-FeatureIO Description: Modules for reading, writing, and manipulating sequence features An I/O iterator subsystem for genomic sequence features. . Bio::FeatureIO is a handler module for the formats in the FeatureIO set (eg, Bio::FeatureIO::GFF). It is the officially sanctioned way of getting at the format objects, which most people should use. . The Bio::FeatureIO system can be thought of like biological file handles. They are attached to filehandles with smart formatting rules (eg, GFF format, or BED format) and can either read or write feature objects (Bio::SeqFeature objects, or more correctly, Bio::FeatureHolderI implementing objects, of which Bio::SeqFeature is one such object). If you want to know what to do with a Bio::SeqFeatureI object, read Bio::SeqFeatureI. . The idea is that you request a stream object for a particular format. All the stream objects have a notion of an internal file that is read from or written to. A particular FeatureIO object instance is configured for either input or output. A specific example of a stream object is the Bio::FeatureIO::gff object. drwxr-xr-x root/root 0 2020-01-13 08:01 ./ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/doc/libbio-featureio-perl/ -rw-r--r-- root/root 266 2020-01-13 08:01 ./usr/share/doc/libbio-featureio-perl/changelog.Debian.gz -rw-r--r-- root/root 449 2014-09-05 17:34 ./usr/share/doc/libbio-featureio-perl/changelog.gz -rw-r--r-- root/root 1128 2020-01-13 08:01 ./usr/share/doc/libbio-featureio-perl/copyright drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/man/ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/man/man3/ -rw-r--r-- root/root 4906 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO.3pm.gz -rw-r--r-- root/root 2219 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::bed.3pm.gz -rw-r--r-- root/root 3201 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::gff.3pm.gz -rw-r--r-- root/root 1583 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::gtf.3pm.gz -rw-r--r-- root/root 1771 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::interpro.3pm.gz -rw-r--r-- root/root 2745 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::ptt.3pm.gz -rw-r--r-- root/root 2157 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::vecscreen_simple.3pm.gz -rw-r--r-- root/root 5423 2020-01-13 08:01 ./usr/share/man/man3/Bio::SeqFeature::Annotated.3pm.gz drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/perl5/ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/perl5/Bio/ -rw-r--r-- root/root 14074 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO.pm drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/perl5/Bio/FeatureIO/ -rw-r--r-- root/root 7054 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/bed.pm -rw-r--r-- root/root 27526 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/gff.pm -rw-r--r-- root/root 2128 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/gtf.pm -rw-r--r-- root/root 5622 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/interpro.pm -rw-r--r-- root/root 6012 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/ptt.pm -rw-r--r-- root/root 5023 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/vecscreen_simple.pm drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/perl5/Bio/SeqFeature/ -rw-r--r-- root/root 33109 2014-09-05 17:34 ./usr/share/perl5/Bio/SeqFeature/Annotated.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 1024 Build-Time: 4 Distribution: sid Host Architecture: amd64 Install-Time: 7 Job: /srv/debomatic/incoming/libbio-featureio-perl_1.6.905-2.dsc Machine Architecture: amd64 Package: libbio-featureio-perl Package-Time: 20 Source-Version: 1.6.905-2 Space: 1024 Status: successful Version: 1.6.905-2 -------------------------------------------------------------------------------- Finished at 2024-08-05T11:36:49Z Build needed 00:00:20, 1024k disk space