sbuild (Debian sbuild) 0.91.9 (05 May 2026) on carme.larted.org.uk +==============================================================================+ | libsbml 5.20.5+dfsg-3+b1 (amd64) Sat, 27 Jun 2026 19:38:22 +0000 | +==============================================================================+ Package: libsbml Version: 5.20.5+dfsg-3+b1 Source Version: 5.20.5+dfsg-3 Distribution: perl-5.44 Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sat, 27 Jun 2026 19:38:22 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libsbml_5.20.5+dfsg-3 perl-5.44 amd64 ------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libsbml_5.20.5+dfsg-3 perl-5.44 amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sat, 27 Jun 2026 19:38:23 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Get:2 file:/srv/reprepro perl-5.44/main amd64 Packages [599 kB] Hit:3 http://deb.debian.org/debian unstable InRelease Hit:4 http://deb.debian.org/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sat, 27 Jun 2026 19:38:28 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libsbml_5.20.5+dfsg-3.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 27 Jun 2026 19:38:29 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-sequence-python3, cmake, dh-exec, doxygen, swig, libxml2-dev, python3-dev, perl, libperl-dev, default-jdk-headless, default-jdk-doc, dh-octave, r-base-dev, r-base-core, graphviz, zlib1g-dev, libbz2-dev, check, rdfind, build-essential Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-sequence-python3, cmake, dh-exec, doxygen, swig, libxml2-dev, python3-dev, perl, libperl-dev, default-jdk-headless, default-jdk-doc, dh-octave, r-base-dev, r-base-core, graphviz, zlib1g-dev, libbz2-dev, check, rdfind, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/libsbml-rlHEno/resolver-eZ36sD/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/libsbml-rlHEno/resolver-eZ36sD/apt_archive ./ InRelease Get:2 copy:/build/libsbml-rlHEno/resolver-eZ36sD/apt_archive ./ Release [609 B] Ign:3 copy:/build/libsbml-rlHEno/resolver-eZ36sD/apt_archive ./ Release.gpg Get:4 copy:/build/libsbml-rlHEno/resolver-eZ36sD/apt_archive ./ Sources [861 B] Get:5 copy:/build/libsbml-rlHEno/resolver-eZ36sD/apt_archive ./ Packages [882 B] Fetched 2352 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: aglfn appstream autoconf automake autopoint autotools-dev bsdextrautils ca-certificates ca-certificates-java check cmake cme comerr-dev debhelper default-jdk-doc default-jdk-headless default-jre-headless dh-autoreconf dh-exec dh-octave dh-octave-autopkgtest dh-python dh-strip-nondeterminism diffstat doxygen dwz file fontconfig fontconfig-config fonts-freefont-otf gettext gettext-base gfortran gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu gnuplot-data gnuplot-nox graphviz groff-base hdf5-helpers icu-devtools intltool-debian iso-codes java-common krb5-multidev libabsl20260107 libaec-dev libaec0 libalgorithm-c3-perl libaliased-perl libamd3 libaom3 libapp-cmd-perl libappstream5 libapt-pkg-perl libarchive-zip-perl libarchive13t64 libarpack2t64 libarray-intspan-perl libasound2-data libasound2t64 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libb-hooks-endofscope-perl libb-hooks-op-check-perl libb-keywords-perl libb2-1 libberkeleydb-perl libblas-dev libblas3 libboolean-perl libbrotli-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcamd3 libcapture-tiny-perl libcarp-assert-more-perl libccolamd3 libcdt6 libcgi-pm-perl libcgraph8 libcholmod5 libclang-cpp21 libclang1-21 libclass-c3-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-load-perl libclass-method-modifiers-perl libclass-singleton-perl libclass-tiny-perl libclass-xsaccessor-perl libclone-choose-perl libclone-perl libclone-pp-perl libcolamd3 libcom-err2 libconfig-inifiles-perl libconfig-model-backend-yaml-perl libconfig-model-dpkg-perl libconfig-model-perl libconfig-tiny-perl libconst-fast-perl libconvert-binhex-perl libcpanel-json-xs-perl libcrypt-dev libcups2t64 libcurl3t64-gnutls libcurl4-gnutls libcurl4-openssl-dev libcurl4t64 libcxsparse4 libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-section-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdatetime-format-builder-perl libdatetime-format-iso8601-perl libdatetime-format-rfc3339-perl libdatetime-format-strptime-perl libdatetime-locale-perl libdatetime-perl libdatetime-timezone-perl libdatrie1 libdav1d7 libdbus-1-3 libde265-0 libdebhelper-perl libdecor-0-0 libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libduktape207 libdynaloader-functions-perl libedit2 libegl-mesa0 libegl1 libelf1t64 libemail-address-xs-perl libencode-locale-perl liberror-perl libeval-closure-perl libevdev2 libevent-2.1-7t64 libexception-class-perl libexpat1 libexpat1-dev libexporter-lite-perl libexporter-tiny-perl libfeature-compat-class-perl libfeature-compat-try-perl libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-basedir-perl libfile-find-rule-perl libfile-homedir-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfile-stripnondeterminism-perl libfile-which-perl libflac14 libfltk-gl1.4 libfltk1.4 libfmt10 libfont-ttf-perl libfontconfig1 libfreetype6 libfribidi0 libfyaml0 libgav1-2 libgbm1 libgd3 libgetopt-long-descriptive-perl libgfortran-15-dev libgfortran5 libgl-dev libgl1 libgl1-mesa-dri libgl2ps1.4 libglib2.0-0t64 libglpk40 libglu1-mesa libglvnd0 libglx-dev libglx-mesa0 libglx0 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgraphicsmagick++-q16-12t64 libgraphicsmagick-q16-3t64 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libgudev-1.0-0 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libhash-merge-perl libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwy1t64 libice6 libicu-dev libicu78 libidn2-dev libimagequant0 libimport-into-perl libindirect-perl libinput-bin libinput10 libintl-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libio-tiecombine-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjack-jackd2-0 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-jquery-ui-theme-base libjs-sphinxdoc libjson-maybexs-perl libjson-perl libjsoncpp26 libjxl0.11 libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-dev liblerc4 liblingua-en-inflect-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl libllvm21 liblog-any-adapter-screen-perl liblog-any-perl liblog-log4perl-perl libltdl7 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzma-dev liblzo2-2 libmagic-mgc libmagic1t64 libmailtools-perl libmarkdown2 libmd4c0 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libmousex-nativetraits-perl libmousex-strictconstructor-perl libmp3lame0 libmpg123-0t64 libmro-compat-perl libmtdev1t64 libnamespace-autoclean-perl libnamespace-clean-perl libncurses-dev libncurses6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libnspr4 libnss3 libnumber-compare-perl libobject-pad-perl libogg0 libopengl0 libopus0 libp11-kit-dev libpackage-stash-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libparams-classify-perl libparams-util-perl libparams-validate-perl libparams-validationcompiler-perl libparse-debcontrol-perl libparse-recdescent-perl libpath-iterator-rule-perl libpath-tiny-perl libpathplan4 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcsclite1 libperl-critic-perl libperl-dev libperlio-gzip-perl libperlio-utf8-strict-perl libpipeline1 libpixman-1-0 libpkgconf7 libpng-dev libpng16-16t64 libpod-constants-perl libpod-parser-perl libpod-pom-perl libpod-spell-perl libportaudio2 libppi-perl libppix-quotelike-perl libppix-regexp-perl libppix-utils-perl libproc-processtable-perl libproc2-0 libproxy1v5 libpsl-dev libpsl5t64 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libqrupdate1 libqscintilla2-qt6-15 libqscintilla2-qt6-l10n libqt6core5compat6 libqt6core6t64 libqt6dbus6 libqt6gui6 libqt6help6 libqt6network6 libqt6opengl6 libqt6openglwidgets6 libqt6printsupport6 libqt6sql6 libqt6widgets6 libqt6xml6 librav1e0.8 libreadline-dev libreadonly-perl libregexp-common-perl libregexp-pattern-license-perl libregexp-pattern-perl libregexp-wildcards-perl librhash1 librole-tiny-perl librtmp-dev librtmp1 libsafe-isa-perl libsamplerate0 libsensors-config libsensors5 libsereal-decoder-perl libsereal-encoder-perl libset-intspan-perl libsharpyuv0 libsm6 libsndfile1 libsoftware-copyright-perl libsoftware-license-perl libsoftware-licensemoreutils-perl libsort-versions-perl libspdlog1.15 libspecio-perl libspqr4 libssh2-1-dev libssh2-1t64 libssl-dev libstemmer0d libstrictures-perl libstring-copyright-perl libstring-escape-perl libstring-format-perl libstring-license-perl libstring-rewriteprefix-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsubunit-dev libsubunit0 libsuitesparseconfig7 libsvtav1enc4 libsyntax-keyword-try-perl libsz2 libtask-weaken-perl libtasn1-6-dev libtcl8.6 libterm-readkey-perl libtest-exception-perl libtext-autoformat-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshtein-damerau-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-reform-perl libtext-template-perl libtext-unidecode-perl libtext-wrapi18n-perl libtext-wrapper-perl libtext-xslate-perl libthai-data libthai0 libtiff6 libtime-duration-perl libtime-moment-perl libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtoml-tiny-perl libtool libtry-tiny-perl libts0t64 libuchardet0 libumfpack6 libunbound8 libunicode-utf8-perl libunistring-dev liburi-perl libuv1t64 libvariable-magic-perl libvorbis0a libvorbisenc2 libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 libwebpmux3 libwmflite-0.2-7 libwww-mechanize-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-dev libx11-xcb1 libxapian30 libxau-dev libxau6 libxcb-cursor0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcursor1 libxdmcp-dev libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2-16 libxml2-dev libxmlb2 libxmuu1 libxpm4 libxrender1 libxs-parse-keyword-perl libxs-parse-sublike-perl libxshmfence1 libxss1 libxstring-perl libxt6t64 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-pp-perl libyaml-tiny-perl libyuv0 libz3-4 libzstd-dev licensecheck lintian lzop m4 man-db media-types mesa-libgallium netbase nettle-dev octave octave-common octave-dev openjdk-25-doc openjdk-25-jdk-headless openjdk-25-jre-headless openssl patchutils perl-openssl-defaults perltidy pkgconf pkgconf-bin plzip po-debconf procps python3 python3-dev python3-minimal python3.13 python3.13-dev python3.13-minimal r-base-core r-base-dev rdfind sensible-utils shared-mime-info swig t1utils tex-common texinfo texinfo-lib tzdata ucf unzip x11-common x11proto-dev xauth xdg-utils xkb-data xorg-sgml-doctools xtrans-dev zip zlib1g-dev Suggested packages: apt-config-icons autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build libconfig-model-cursesui-perl libconfig-model-itself-perl doc-base dh-make default-jdk default-jre flit python3-build python3-installer python3-wheel doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n gfortran-multilib gfortran-doc gfortran-15-multilib gfortran-15-doc libcoarrays-dev gnuplot-doc gsfonts graphviz-doc groff isoquery krb5-doc lrzip alsa-utils libasound2-plugins liblapack-doc fuse libconfig-model-openssh-perl libconfig-ini-perl libfilesys-fuse3-perl libterm-readline-perl-perl | libterm-readline-gnu-perl cups-common libcurl4-doc libidn-dev libfftw3-doc fltk-options libxml-parser-perl libgd-tools low-memory-monitor libiodbc2-dev default-libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc graphicsmagick-dbg krb5-user libhdf5-doc libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libdata-dump-perl icu-doc jackd2 libjs-jquery-ui-docs liblcms2-utils libdbd-csv-perl liblog-dispatch-filerotate-perl librrds-perl libxml-dom-perl libcrypt-ssleay-perl liblzma-doc ncurses-doc libnghttp2-doc opus-tools p11-kit-doc libscalar-number-perl pciutils pcscd libqscintilla2-doc readline-doc lm-sensors libtest-fatal-perl libssl-doc libbareword-filehandles-perl libmultidimensional-perl tcl8.6 tk8.6 libtool-doc libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libwacom-bin libauthen-ntlm-perl libx11-doc xapian-tools libxcb-doc bash-completion binutils-multiarch m4-doc apparmor less www-browser openjdk-25-jdk openjdk-25-demo openjdk-25-source libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra swig-doc swig-examples Recommended packages: libconfig-model-approx-perl libconfig-model-lcdproc-perl libconfig-model-openssh-perl libconfig-model-systemd-perl libconfig-model-tkui-perl curl | wget | lynx fonts-liberation groff alsa-ucm-conf alsa-topology-conf bzip2-doc libcgi-fast-perl libclass-c3-xs-perl bash-completion default-libdecor-0-plugin-1 | libdecor-0-plugin-1 libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data xdg-user-dirs ghostscript fonts-urw-base35 libheif-plugin-x265 libheif-plugin-aomenc libhtml-format-perl libio-compress-brotli-perl libintl-xs-perl javascript-common libjson-xs-perl krb5-locales liblist-someutils-xs-perl libipc-shareable-perl liblog-dispatch-perl libfreezethaw-perl libgpm2 libmath-base85-perl libauthen-sasl-perl libsocket6-perl libpackage-stash-xs-perl libtie-ixhash-perl libpng-tools publicsuffix qt6-translations-l10n qt6-gtk-platformtheme qt6-qpa-plugins qt6-svg-plugins qt6-wayland libqt6sql6-sqlite | libqt6sql6-mysql | libqt6sql6-odbc | libqt6sql6-psql | libqt6sql6-ibase libre-engine-re2-perl libref-util-perl libtasn1-doc libtypes-serialiser-perl libltdl-dev mesa-vulkan-drivers | vulkan-icd libdata-dump-perl libhttp-daemon-perl libxml-sax-expat-perl libopenblas0 | libblis4 pstoedit epstool octave-doc libmail-sendmail-perl psmisc linux-sysctl-defaults r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: aglfn appstream autoconf automake autopoint autotools-dev bsdextrautils ca-certificates ca-certificates-java check cmake cme comerr-dev debhelper default-jdk-doc default-jdk-headless default-jre-headless dh-autoreconf dh-exec dh-octave dh-octave-autopkgtest dh-python dh-strip-nondeterminism diffstat doxygen dwz file fontconfig fontconfig-config fonts-freefont-otf gettext gettext-base gfortran gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu gnuplot-data gnuplot-nox graphviz groff-base hdf5-helpers icu-devtools intltool-debian iso-codes java-common krb5-multidev libabsl20260107 libaec-dev libaec0 libalgorithm-c3-perl libaliased-perl libamd3 libaom3 libapp-cmd-perl libappstream5 libapt-pkg-perl libarchive-zip-perl libarchive13t64 libarpack2t64 libarray-intspan-perl libasound2-data libasound2t64 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libb-hooks-endofscope-perl libb-hooks-op-check-perl libb-keywords-perl libb2-1 libberkeleydb-perl libblas-dev libblas3 libboolean-perl libbrotli-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcamd3 libcapture-tiny-perl libcarp-assert-more-perl libccolamd3 libcdt6 libcgi-pm-perl libcgraph8 libcholmod5 libclang-cpp21 libclang1-21 libclass-c3-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-load-perl libclass-method-modifiers-perl libclass-singleton-perl libclass-tiny-perl libclass-xsaccessor-perl libclone-choose-perl libclone-perl libclone-pp-perl libcolamd3 libcom-err2 libconfig-inifiles-perl libconfig-model-backend-yaml-perl libconfig-model-dpkg-perl libconfig-model-perl libconfig-tiny-perl libconst-fast-perl libconvert-binhex-perl libcpanel-json-xs-perl libcrypt-dev libcups2t64 libcurl3t64-gnutls libcurl4-gnutls libcurl4-openssl-dev libcurl4t64 libcxsparse4 libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-section-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdatetime-format-builder-perl libdatetime-format-iso8601-perl libdatetime-format-rfc3339-perl libdatetime-format-strptime-perl libdatetime-locale-perl libdatetime-perl libdatetime-timezone-perl libdatrie1 libdav1d7 libdbus-1-3 libde265-0 libdebhelper-perl libdecor-0-0 libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libduktape207 libdynaloader-functions-perl libedit2 libegl-mesa0 libegl1 libelf1t64 libemail-address-xs-perl libencode-locale-perl liberror-perl libeval-closure-perl libevdev2 libevent-2.1-7t64 libexception-class-perl libexpat1 libexpat1-dev libexporter-lite-perl libexporter-tiny-perl libfeature-compat-class-perl libfeature-compat-try-perl libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-basedir-perl libfile-find-rule-perl libfile-homedir-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfile-stripnondeterminism-perl libfile-which-perl libflac14 libfltk-gl1.4 libfltk1.4 libfmt10 libfont-ttf-perl libfontconfig1 libfreetype6 libfribidi0 libfyaml0 libgav1-2 libgbm1 libgd3 libgetopt-long-descriptive-perl libgfortran-15-dev libgfortran5 libgl-dev libgl1 libgl1-mesa-dri libgl2ps1.4 libglib2.0-0t64 libglpk40 libglu1-mesa libglvnd0 libglx-dev libglx-mesa0 libglx0 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgraphicsmagick++-q16-12t64 libgraphicsmagick-q16-3t64 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libgudev-1.0-0 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libhash-merge-perl libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwy1t64 libice6 libicu-dev libicu78 libidn2-dev libimagequant0 libimport-into-perl libindirect-perl libinput-bin libinput10 libintl-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libio-tiecombine-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjack-jackd2-0 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-jquery-ui-theme-base libjs-sphinxdoc libjson-maybexs-perl libjson-perl libjsoncpp26 libjxl0.11 libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-dev liblerc4 liblingua-en-inflect-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl libllvm21 liblog-any-adapter-screen-perl liblog-any-perl liblog-log4perl-perl libltdl7 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzma-dev liblzo2-2 libmagic-mgc libmagic1t64 libmailtools-perl libmarkdown2 libmd4c0 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libmousex-nativetraits-perl libmousex-strictconstructor-perl libmp3lame0 libmpg123-0t64 libmro-compat-perl libmtdev1t64 libnamespace-autoclean-perl libnamespace-clean-perl libncurses-dev libncurses6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libnspr4 libnss3 libnumber-compare-perl libobject-pad-perl libogg0 libopengl0 libopus0 libp11-kit-dev libpackage-stash-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libparams-classify-perl libparams-util-perl libparams-validate-perl libparams-validationcompiler-perl libparse-debcontrol-perl libparse-recdescent-perl libpath-iterator-rule-perl libpath-tiny-perl libpathplan4 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcsclite1 libperl-critic-perl libperl-dev libperlio-gzip-perl libperlio-utf8-strict-perl libpipeline1 libpixman-1-0 libpkgconf7 libpng-dev libpng16-16t64 libpod-constants-perl libpod-parser-perl libpod-pom-perl libpod-spell-perl libportaudio2 libppi-perl libppix-quotelike-perl libppix-regexp-perl libppix-utils-perl libproc-processtable-perl libproc2-0 libproxy1v5 libpsl-dev libpsl5t64 libpython3-dev libpython3-stdlib libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libqrupdate1 libqscintilla2-qt6-15 libqscintilla2-qt6-l10n libqt6core5compat6 libqt6core6t64 libqt6dbus6 libqt6gui6 libqt6help6 libqt6network6 libqt6opengl6 libqt6openglwidgets6 libqt6printsupport6 libqt6sql6 libqt6widgets6 libqt6xml6 librav1e0.8 libreadline-dev libreadonly-perl libregexp-common-perl libregexp-pattern-license-perl libregexp-pattern-perl libregexp-wildcards-perl librhash1 librole-tiny-perl librtmp-dev librtmp1 libsafe-isa-perl libsamplerate0 libsensors-config libsensors5 libsereal-decoder-perl libsereal-encoder-perl libset-intspan-perl libsharpyuv0 libsm6 libsndfile1 libsoftware-copyright-perl libsoftware-license-perl libsoftware-licensemoreutils-perl libsort-versions-perl libspdlog1.15 libspecio-perl libspqr4 libssh2-1-dev libssh2-1t64 libssl-dev libstemmer0d libstrictures-perl libstring-copyright-perl libstring-escape-perl libstring-format-perl libstring-license-perl libstring-rewriteprefix-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsubunit-dev libsubunit0 libsuitesparseconfig7 libsvtav1enc4 libsyntax-keyword-try-perl libsz2 libtask-weaken-perl libtasn1-6-dev libtcl8.6 libterm-readkey-perl libtest-exception-perl libtext-autoformat-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshtein-damerau-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-reform-perl libtext-template-perl libtext-unidecode-perl libtext-wrapi18n-perl libtext-wrapper-perl libtext-xslate-perl libthai-data libthai0 libtiff6 libtime-duration-perl libtime-moment-perl libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtoml-tiny-perl libtool libtry-tiny-perl libts0t64 libuchardet0 libumfpack6 libunbound8 libunicode-utf8-perl libunistring-dev liburi-perl libuv1t64 libvariable-magic-perl libvorbis0a libvorbisenc2 libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 libwebpmux3 libwmflite-0.2-7 libwww-mechanize-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-dev libx11-xcb1 libxapian30 libxau-dev libxau6 libxcb-cursor0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcursor1 libxdmcp-dev libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2-16 libxml2-dev libxmlb2 libxmuu1 libxpm4 libxrender1 libxs-parse-keyword-perl libxs-parse-sublike-perl libxshmfence1 libxss1 libxstring-perl libxt6t64 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-pp-perl libyaml-tiny-perl libyuv0 libz3-4 libzstd-dev licensecheck lintian lzop m4 man-db media-types mesa-libgallium netbase nettle-dev octave octave-common octave-dev openjdk-25-doc openjdk-25-jdk-headless openjdk-25-jre-headless openssl patchutils perl-openssl-defaults perltidy pkgconf pkgconf-bin plzip po-debconf procps python3 python3-dev python3-minimal python3.13 python3.13-dev python3.13-minimal r-base-core r-base-dev rdfind sbuild-build-depends-main-dummy sensible-utils shared-mime-info swig t1utils tex-common texinfo texinfo-lib tzdata ucf unzip x11-common x11proto-dev xauth xdg-utils xkb-data xorg-sgml-doctools xtrans-dev zip zlib1g-dev 0 upgraded, 636 newly installed, 0 to remove and 0 not upgraded. Need to get 484 MB/491 MB of archives. After this operation, 1947 MB of additional disk space will be used. Get:1 copy:/build/libsbml-rlHEno/resolver-eZ36sD/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [996 B] Get:2 file:/srv/reprepro perl-5.44/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9324 B] Get:3 file:/srv/reprepro perl-5.44/main amd64 libparams-util-perl amd64 1.102-3+b2 [24.8 kB] Get:4 file:/srv/reprepro perl-5.44/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b5 [10.6 kB] Get:5 file:/srv/reprepro perl-5.44/main amd64 libdevel-callchecker-perl amd64 0.009-3+b1 [15.7 kB] Get:6 file:/srv/reprepro perl-5.44/main amd64 libparams-classify-perl amd64 0.015-2+b6 [22.5 kB] Get:7 file:/srv/reprepro perl-5.44/main amd64 libparams-validate-perl amd64 1.31-2+b5 [63.1 kB] Get:8 file:/srv/reprepro perl-5.44/main amd64 liblist-moreutils-xs-perl amd64 0.430-4+b3 [41.8 kB] Get:9 file:/srv/reprepro perl-5.44/main amd64 libmouse-perl amd64 2.6.2-1+b1 [143 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.8.2-1 [121 kB] Get:11 file:/srv/reprepro perl-5.44/main amd64 libapt-pkg-perl amd64 0.1.43+b1 [68.5 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.14-1 [864 kB] Get:13 file:/srv/reprepro perl-5.44/main amd64 libyaml-libyaml-perl amd64 0.907.0+ds-1+b1 [47.6 kB] Get:14 file:/srv/reprepro perl-5.44/main amd64 libhtml-parser-perl amd64 3.83-2+b1 [99.4 kB] Get:15 file:/srv/reprepro perl-5.44/main amd64 libclone-perl amd64 0.50-1+b1 [21.8 kB] Get:16 file:/srv/reprepro perl-5.44/main amd64 libnet-ssleay-perl amd64 1.96-1+b1 [345 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.14-1 [2271 kB] Get:18 file:/srv/reprepro perl-5.44/main amd64 libvariable-magic-perl amd64 0.64-1+b2 [45.1 kB] Get:19 file:/srv/reprepro perl-5.44/main amd64 libsub-identify-perl amd64 0.14-4+b1 [11.3 kB] Get:20 file:/srv/reprepro perl-5.44/main amd64 libsub-name-perl amd64 0.28-1+b3 [12.5 kB] Get:21 file:/srv/reprepro perl-5.44/main amd64 libxstring-perl amd64 0.005-2+b6 [8084 B] Get:22 file:/srv/reprepro perl-5.44/main amd64 libdatetime-perl amd64 2:1.65-1+b3 [116 kB] Get:23 file:/srv/reprepro perl-5.44/main amd64 libindirect-perl amd64 0.39-2+b5 [27.3 kB] Get:24 file:/srv/reprepro perl-5.44/main amd64 libxs-parse-keyword-perl amd64 0.49-1+b1 [66.3 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.9-3+b1 [25.4 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026b-1 [260 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.14-1 [1982 kB] Get:30 file:/srv/reprepro perl-5.44/main amd64 libxs-parse-sublike-perl amd64 0.41-1+b2 [51.1 kB] Get:31 file:/srv/reprepro perl-5.44/main amd64 libobject-pad-perl amd64 0.825-1+b1 [141 kB] Get:32 file:/srv/reprepro perl-5.44/main amd64 libsyntax-keyword-try-perl amd64 0.31-1+b1 [27.0 kB] Get:33 file:/srv/reprepro perl-5.44/main amd64 libberkeleydb-perl amd64 0.66-2+b2 [122 kB] Get:34 file:/srv/reprepro perl-5.44/main amd64 libcpanel-json-xs-perl amd64 4.42-1+b1 [134 kB] Get:35 file:/srv/reprepro perl-5.44/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b6 [36.4 kB] Get:36 file:/srv/reprepro perl-5.44/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b6 [98.3 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.14-1 [781 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.9-3+b1 [8348 B] Get:39 file:/srv/reprepro perl-5.44/main amd64 libdevel-size-perl amd64 0.87-1+b1 [24.2 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.9-3+b1 [25.4 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9+b2 [63.8 kB] Get:42 file:/srv/reprepro perl-5.44/main amd64 libemail-address-xs-perl amd64 1.05-1+b5 [29.8 kB] Get:43 file:/srv/reprepro perl-5.44/main amd64 libfile-libmagic-perl amd64 1.23-2+b3 [31.3 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9+b2 [880 kB] Get:45 file:/srv/reprepro perl-5.44/main amd64 libperlio-gzip-perl amd64 0.20-1+b5 [17.5 kB] Get:46 file:/srv/reprepro perl-5.44/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b4 [11.4 kB] Get:47 file:/srv/reprepro perl-5.44/main amd64 libproc-processtable-perl amd64 0.637-1+b3 [41.9 kB] Get:48 file:/srv/reprepro perl-5.44/main amd64 libsereal-decoder-perl amd64 5.006+ds-1+b1 [101 kB] Get:49 file:/srv/reprepro perl-5.44/main amd64 libsereal-encoder-perl amd64 5.006+ds-1+b1 [104 kB] Get:50 file:/srv/reprepro perl-5.44/main amd64 libterm-readkey-perl amd64 2.38-2+b5 [24.7 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.6.3-1 [1522 kB] Get:53 file:/srv/reprepro perl-5.44/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b5 [8756 B] Get:54 file:/srv/reprepro perl-5.44/main amd64 libtext-markdown-discount-perl amd64 0.18-1+b1 [13.2 kB] Get:55 file:/srv/reprepro perl-5.44/main amd64 libdata-messagepack-perl amd64 1.02-3+b1 [32.3 kB] Get:56 file:/srv/reprepro perl-5.44/main amd64 libtext-xslate-perl amd64 3.5.9-2+b3 [175 kB] Get:57 file:/srv/reprepro perl-5.44/main amd64 libtime-moment-perl amd64 0.46-1+b1 [78.5 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20260601 [134 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:60 file:/srv/reprepro perl-5.44/main amd64 libunicode-utf8-perl amd64 0.70-2+b1 [20.8 kB] Get:61 file:/srv/reprepro perl-5.44/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-8+b1 [314 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:63 file:/srv/reprepro perl-5.44/main amd64 libgraphicsmagick-q16-3t64 amd64 1.4+really1.3.46-2+b1 [1261 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-1 [332 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:68 file:/srv/reprepro perl-5.44/main amd64 libgraphicsmagick++-q16-12t64 amd64 1.4+really1.3.46-2+b1 [122 kB] Get:69 file:/srv/reprepro perl-5.44/main amd64 texinfo-lib amd64 7.3-2+b1 [703 kB] Get:70 file:/srv/reprepro perl-5.44/main amd64 libldap-dev amd64 2.6.13+dfsg-1+b1 [308 kB] Get:71 file:/srv/reprepro perl-5.44/main amd64 libcdt6 amd64 14.1.2-1+b2 [18.3 kB] Get:72 file:/srv/reprepro perl-5.44/main amd64 libcgraph8 amd64 14.1.2-1+b2 [58.5 kB] Get:73 file:/srv/reprepro perl-5.44/main amd64 libpathplan4 amd64 14.1.2-1+b2 [29.6 kB] Get:74 file:/srv/reprepro perl-5.44/main amd64 libxdot4 amd64 14.1.2-1+b2 [21.5 kB] Get:75 file:/srv/reprepro perl-5.44/main amd64 libgvc7 amd64 14.1.2-1+b2 [374 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.2-1 [100.0 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:79 file:/srv/reprepro perl-5.44/main amd64 libgvpr2 amd64 14.1.2-1+b2 [125 kB] Get:80 file:/srv/reprepro perl-5.44/main amd64 libgvplugin-gd8 amd64 14.1.2-1+b2 [27.0 kB] Get:81 file:/srv/reprepro perl-5.44/main amd64 libgvplugin-pango8 amd64 14.1.2-1+b2 [31.1 kB] Get:82 file:/srv/reprepro perl-5.44/main amd64 graphviz amd64 14.1.2-1+b2 [60.2 kB] Get:83 file:/srv/reprepro perl-5.44/main amd64 libperl-dev amd64 5.44.0~rc1-1 [1169 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:85 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0056 [47.1 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.88.2-1 [1536 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.15.0-1 [67.2 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.22.1-1 [133 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:97 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.69.0-1 [89.0 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.22.1-1 [20.8 kB] Get:101 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.22.0-1 [60.7 kB] Get:102 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-4 [244 kB] Get:103 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls amd64 8.21.0-1 [416 kB] Get:104 http://deb.debian.org/debian unstable/main amd64 libfyaml0 amd64 0.9.4-1 [312 kB] Get:105 http://deb.debian.org/debian unstable/main amd64 libstemmer0d amd64 3.1.1-1 [138 kB] Get:106 http://deb.debian.org/debian unstable/main amd64 libxmlb2 amd64 0.3.24-2+b1 [62.8 kB] Get:107 http://deb.debian.org/debian unstable/main amd64 libappstream5 amd64 1.1.3-1 [228 kB] Get:108 http://deb.debian.org/debian unstable/main amd64 appstream amd64 1.1.3-1 [602 kB] Get:109 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:110 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:111 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:112 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:113 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-1 [820 kB] Get:114 http://deb.debian.org/debian unstable/main amd64 ca-certificates-java all 20260311 [11.2 kB] Get:115 http://deb.debian.org/debian unstable/main amd64 libsubunit0 amd64 1.4.4+1-1+b1 [6072 B] Get:116 http://deb.debian.org/debian unstable/main amd64 libsubunit-dev amd64 1.4.4+1-1+b1 [7004 B] Get:117 http://deb.debian.org/debian unstable/main amd64 check amd64 0.15.2-3+b1 [114 kB] Get:118 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.8.7-1 [361 kB] Get:119 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.22.1-1 [23.3 kB] Get:120 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.21.0-1 [422 kB] Get:121 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.7-4 [86.8 kB] Get:122 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1.1+b1 [135 kB] Get:123 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.52.1-4 [158 kB] Get:124 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.3.4-1 [16.2 MB] Get:125 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:126 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:127 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:128 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:129 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:130 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:131 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:132 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:133 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get:134 http://deb.debian.org/debian unstable/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB] Get:135 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:136 http://deb.debian.org/debian unstable/main amd64 libgetopt-long-descriptive-perl all 0.117-1 [29.8 kB] Get:137 http://deb.debian.org/debian unstable/main amd64 libio-tiecombine-perl all 1.005-3 [10.8 kB] Get:138 http://deb.debian.org/debian unstable/main amd64 libmodule-pluggable-perl all 6.3-1 [24.1 kB] Get:139 http://deb.debian.org/debian unstable/main amd64 libstring-rewriteprefix-perl all 0.009-1 [7140 B] Get:140 http://deb.debian.org/debian unstable/main amd64 libapp-cmd-perl all 0.340-1 [63.8 kB] Get:141 http://deb.debian.org/debian unstable/main amd64 libboolean-perl all 0.46-3 [9924 B] Get:142 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:143 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:144 http://deb.debian.org/debian unstable/main amd64 libcarp-assert-more-perl all 2.9.0-1 [21.9 kB] Get:145 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:146 http://deb.debian.org/debian unstable/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:147 http://deb.debian.org/debian unstable/main amd64 libclone-choose-perl all 0.010-2 [8676 B] Get:148 http://deb.debian.org/debian unstable/main amd64 libhash-merge-perl all 0.302-1 [14.7 kB] Get:149 http://deb.debian.org/debian unstable/main amd64 libexporter-tiny-perl all 1.006003-1 [37.5 kB] Get:150 http://deb.debian.org/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:151 http://deb.debian.org/debian unstable/main amd64 liblog-log4perl-perl all 1.57-1 [367 kB] Get:152 http://deb.debian.org/debian unstable/main amd64 libmousex-nativetraits-perl all 1.09-3 [53.5 kB] Get:153 http://deb.debian.org/debian unstable/main amd64 libmousex-strictconstructor-perl all 0.02-3 [5304 B] Get:154 http://deb.debian.org/debian unstable/main amd64 libparse-recdescent-perl all 1.967015+dfsg-4 [147 kB] Get:155 http://deb.debian.org/debian unstable/main amd64 libpath-tiny-perl all 0.150-1 [56.4 kB] Get:156 http://deb.debian.org/debian unstable/main amd64 libregexp-common-perl all 2024080801-1 [167 kB] Get:157 http://deb.debian.org/debian unstable/main amd64 libconfig-model-perl all 2.163-1 [403 kB] Get:158 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:159 http://deb.debian.org/debian unstable/main amd64 libpod-pom-perl all 2.01-4 [65.0 kB] Get:160 http://deb.debian.org/debian unstable/main amd64 libyaml-pp-perl all 0.41.0-1 [112 kB] Get:161 http://deb.debian.org/debian unstable/main amd64 cme all 1.048-1 [72.5 kB] Get:162 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.4-1 [50.9 kB] Get:163 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.2 [77.1 kB] Get:164 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Get:165 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:166 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:167 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:168 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:169 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Get:170 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:171 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-1 [2660 kB] Get:172 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:173 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:174 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.2 [933 kB] Get:175 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:176 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:177 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui-theme-base all 1.14.2+dfsg-1 [44.1 kB] Get:178 http://deb.debian.org/debian unstable/main amd64 openjdk-25-doc all 25.0.4~4ea-1 [18.6 MB] Get:179 http://deb.debian.org/debian unstable/main amd64 default-jdk-doc amd64 2:1.25-77 [3124 B] Get:180 http://deb.debian.org/debian unstable/main amd64 java-common all 0.77 [6620 B] Get:181 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.19.1-1 [164 kB] Get:182 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:183 http://deb.debian.org/debian unstable/main amd64 libnspr4 amd64 2:4.38.2-1+b1 [110 kB] Get:184 http://deb.debian.org/debian unstable/main amd64 libnss3 amd64 2:3.124-1 [1422 kB] Get:185 http://deb.debian.org/debian unstable/main amd64 libpcsclite1 amd64 2.5.1-1 [54.8 kB] Get:186 http://deb.debian.org/debian unstable/main amd64 openjdk-25-jre-headless amd64 25.0.4~4ea-1 [53.7 MB] Get:187 http://deb.debian.org/debian unstable/main amd64 default-jre-headless amd64 2:1.25-77 [3012 B] Get:188 http://deb.debian.org/debian unstable/main amd64 openjdk-25-jdk-headless amd64 25.0.4~4ea-1 [89.6 MB] Get:189 http://deb.debian.org/debian unstable/main amd64 default-jdk-headless amd64 2:1.25-77 [1080 B] Get:190 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.31 [26.1 kB] Get:191 http://deb.debian.org/debian unstable/main amd64 gnuplot-data all 6.0.3+dfsg1-1 [73.0 kB] Get:192 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:193 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.14.3+dfsg-1 [493 kB] Get:194 http://deb.debian.org/debian unstable/main amd64 fonts-freefont-otf all 20211204+svn4273-4 [4322 kB] Get:195 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:196 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:197 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:198 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:199 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:200 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:201 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:202 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:203 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:204 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:205 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:206 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:207 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:208 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-3 [132 kB] Get:209 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:210 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.13.1-2+b1 [1904 kB] Get:211 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.3-1+b2 [563 kB] Get:212 http://deb.debian.org/debian unstable/main amd64 libabsl20260107 amd64 20260107.0-5 [549 kB] Get:213 http://deb.debian.org/debian unstable/main amd64 libgav1-2 amd64 0.20.0-2+b1 [372 kB] Get:214 http://deb.debian.org/debian unstable/main amd64 librav1e0.8 amd64 0.8.1-10 [973 kB] Get:215 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc4 amd64 4.1.0+dfsg-1 [2414 kB] Get:216 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1922.20260106-1+b1 [175 kB] Get:217 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.4.1-1+b1 [147 kB] Get:218 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b2 [115 kB] Get:219 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.18-1 [187 kB] Get:220 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.21.2-4 [16.9 kB] Get:221 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.21.2-4 [19.5 kB] Get:222 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.21.2-4 [649 kB] Get:223 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.1-1+b2 [255 kB] Get:224 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:225 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:226 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.1.0+ds-1 [199 kB] Get:227 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1+b2 [335 kB] Get:228 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-3 [361 kB] Get:229 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.19-1 [58.9 kB] Get:230 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-13+b2 [126 kB] Get:231 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.8-2 [148 kB] Get:232 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:233 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:234 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:235 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:236 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.30-1 [172 kB] Get:237 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.14-1+b1 [39.5 kB] Get:238 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.30-1+b1 [52.1 kB] Get:239 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.57.1-2 [224 kB] Get:240 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.57.1-2 [52.8 kB] Get:241 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.57.1-2 [33.8 kB] Get:242 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1+b2 [126 kB] Get:243 http://deb.debian.org/debian unstable/main amd64 gnuplot-nox amd64 6.0.3+dfsg1-1 [928 kB] Get:244 http://deb.debian.org/debian unstable/main amd64 dh-octave-autopkgtest all 1.15.0 [10.3 kB] Get:245 http://deb.debian.org/debian unstable/main amd64 libarray-intspan-perl all 2.004-2 [25.7 kB] Get:246 http://deb.debian.org/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-5 [44.9 kB] Get:247 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:248 http://deb.debian.org/debian unstable/main amd64 libconfig-model-backend-yaml-perl all 2.134-2 [10.8 kB] Get:249 http://deb.debian.org/debian unstable/main amd64 libexporter-lite-perl all 0.09-2 [10.7 kB] Get:250 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:251 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3500-1 [64.2 kB] Get:252 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.07-1 [11.7 kB] Get:253 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:254 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:255 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.35-1 [112 kB] Get:256 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:257 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:258 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:259 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.02-1 [79.5 kB] Get:260 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:261 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:262 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:263 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.098-1 [229 kB] Get:264 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:265 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.15-1 [10.7 kB] Get:266 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.03-1 [15.8 kB] Get:267 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.83-1 [186 kB] Get:268 http://deb.debian.org/debian unstable/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get:269 http://deb.debian.org/debian unstable/main amd64 libparse-debcontrol-perl all 2.005-6 [21.6 kB] Get:270 http://deb.debian.org/debian unstable/main amd64 libsoftware-copyright-perl all 0.015-1 [15.5 kB] Get:271 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get:272 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get:273 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get:274 http://deb.debian.org/debian unstable/main amd64 libdata-section-perl all 0.200008-1 [13.1 kB] Get:275 http://deb.debian.org/debian unstable/main amd64 libtext-template-perl all 1.61-1 [54.4 kB] Get:276 http://deb.debian.org/debian unstable/main amd64 libsoftware-license-perl all 0.104007-1 [121 kB] Get:277 http://deb.debian.org/debian unstable/main amd64 libyaml-tiny-perl all 1.76-1 [29.8 kB] Get:278 http://deb.debian.org/debian unstable/main amd64 libsoftware-licensemoreutils-perl all 1.009-1 [22.0 kB] Get:279 http://deb.debian.org/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:280 http://deb.debian.org/debian unstable/main amd64 libtext-reform-perl all 1.20-5 [36.0 kB] Get:281 http://deb.debian.org/debian unstable/main amd64 libtext-autoformat-perl all 1.750000-2 [35.2 kB] Get:282 http://deb.debian.org/debian unstable/main amd64 libtext-levenshtein-damerau-perl all 0.41-3 [12.3 kB] Get:283 http://deb.debian.org/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:284 http://deb.debian.org/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:285 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:286 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:287 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:288 http://deb.debian.org/debian unstable/main amd64 libnamespace-autoclean-perl all 0.31-1 [13.8 kB] Get:289 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get:290 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:291 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:292 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:293 http://deb.debian.org/debian unstable/main amd64 libparams-validationcompiler-perl all 0.31-1 [30.9 kB] Get:294 http://deb.debian.org/debian unstable/main amd64 libclone-pp-perl all 1.08-2 [9224 B] Get:295 http://deb.debian.org/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:296 http://deb.debian.org/debian unstable/main amd64 librole-tiny-perl all 2.002005-1 [19.5 kB] Get:297 http://deb.debian.org/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:298 http://deb.debian.org/debian unstable/main amd64 libspecio-perl all 0.53-1 [134 kB] Get:299 http://deb.debian.org/debian unstable/main amd64 libdatetime-locale-perl all 1:1.45-1 [3207 kB] Get:300 http://deb.debian.org/debian unstable/main amd64 libclass-singleton-perl all 1.6-2 [12.5 kB] Get:301 http://deb.debian.org/debian unstable/main amd64 libdatetime-timezone-perl all 1:2.68-1+2026b [261 kB] Get:302 http://deb.debian.org/debian unstable/main amd64 libdatetime-format-strptime-perl all 1.8000-1 [33.8 kB] Get:303 http://deb.debian.org/debian unstable/main amd64 libdatetime-format-builder-perl all 0.8300-1 [63.8 kB] Get:304 http://deb.debian.org/debian unstable/main amd64 libdatetime-format-iso8601-perl all 0.19-1 [21.8 kB] Get:305 http://deb.debian.org/debian unstable/main amd64 libdatetime-format-rfc3339-perl all 1.10.0-1 [8660 B] Get:306 http://deb.debian.org/debian unstable/main amd64 libtoml-tiny-perl all 0.22-1 [23.2 kB] Get:307 http://deb.debian.org/debian unstable/main amd64 libfeature-compat-class-perl all 0.08-1 [12.4 kB] Get:308 http://deb.debian.org/debian unstable/main amd64 libfeature-compat-try-perl all 0.05-1 [10.4 kB] Get:309 http://deb.debian.org/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:310 http://deb.debian.org/debian unstable/main amd64 liblog-any-perl all 1.720-1 [75.8 kB] Get:311 http://deb.debian.org/debian unstable/main amd64 liblog-any-adapter-screen-perl all 0.141-2 [14.0 kB] Get:312 http://deb.debian.org/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:313 http://deb.debian.org/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:314 http://deb.debian.org/debian unstable/main amd64 libpath-iterator-rule-perl all 1.015-2 [41.7 kB] Get:315 http://deb.debian.org/debian unstable/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get:316 http://deb.debian.org/debian unstable/main amd64 libpod-constants-perl all 0.19-2 [17.3 kB] Get:317 http://deb.debian.org/debian unstable/main amd64 libset-intspan-perl all 1.19-3 [25.3 kB] Get:318 http://deb.debian.org/debian unstable/main amd64 libstring-copyright-perl all 0.003014-1 [23.4 kB] Get:319 http://deb.debian.org/debian unstable/main amd64 libstring-escape-perl all 2010.002-3 [18.7 kB] Get:320 http://deb.debian.org/debian unstable/main amd64 libregexp-pattern-license-perl all 3.11.2-1 [94.6 kB] Get:321 http://deb.debian.org/debian unstable/main amd64 libregexp-pattern-perl all 0.2.14-3 [18.3 kB] Get:322 http://deb.debian.org/debian unstable/main amd64 libstring-license-perl all 0.0.11-1 [34.7 kB] Get:323 http://deb.debian.org/debian unstable/main amd64 licensecheck all 3.3.9-1 [50.1 kB] Get:324 http://deb.debian.org/debian unstable/main amd64 diffstat amd64 1.69-1 [34.9 kB] Get:325 http://deb.debian.org/debian unstable/main amd64 iso-codes all 4.20.1-1 [3319 kB] Get:326 http://deb.debian.org/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:327 http://deb.debian.org/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:328 http://deb.debian.org/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:329 http://deb.debian.org/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:330 http://deb.debian.org/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:331 http://deb.debian.org/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:332 http://deb.debian.org/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:333 http://deb.debian.org/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:334 http://deb.debian.org/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:335 http://deb.debian.org/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:336 http://deb.debian.org/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:337 http://deb.debian.org/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:338 http://deb.debian.org/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:339 http://deb.debian.org/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:340 http://deb.debian.org/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:341 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:342 http://deb.debian.org/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:343 http://deb.debian.org/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:344 http://deb.debian.org/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:345 http://deb.debian.org/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:346 http://deb.debian.org/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:347 http://deb.debian.org/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:348 http://deb.debian.org/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:349 http://deb.debian.org/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:350 http://deb.debian.org/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:351 http://deb.debian.org/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:352 http://deb.debian.org/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:353 http://deb.debian.org/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:354 http://deb.debian.org/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-3 [6996 B] Get:355 http://deb.debian.org/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:356 http://deb.debian.org/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1+b2 [36.5 kB] Get:357 http://deb.debian.org/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:358 http://deb.debian.org/debian unstable/main amd64 libcgi-pm-perl all 4.72-1 [217 kB] Get:359 http://deb.debian.org/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:360 http://deb.debian.org/debian unstable/main amd64 libwww-mechanize-perl all 2.22-1 [117 kB] Get:361 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:362 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:363 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-5 [53.6 kB] Get:364 http://deb.debian.org/debian unstable/main amd64 liblz1 amd64 1.16-1 [39.3 kB] Get:365 http://deb.debian.org/debian unstable/main amd64 plzip amd64 1.13-1 [66.1 kB] Get:366 http://deb.debian.org/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:367 http://deb.debian.org/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:368 http://deb.debian.org/debian unstable/main amd64 patchutils amd64 0.4.5-1 [85.7 kB] Get:369 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:370 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get:371 http://deb.debian.org/debian unstable/main amd64 lintian all 2.137.1 [1024 kB] Get:372 http://deb.debian.org/debian unstable/main amd64 libconfig-model-dpkg-perl all 3.022 [191 kB] Get:373 http://deb.debian.org/debian unstable/main amd64 libconvert-binhex-perl all 1.125-3 [27.4 kB] Get:374 http://deb.debian.org/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:375 http://deb.debian.org/debian unstable/main amd64 libmailtools-perl all 2.22-1 [88.8 kB] Get:376 http://deb.debian.org/debian unstable/main amd64 libmime-tools-perl all 5.517-1 [204 kB] Get:377 http://deb.debian.org/debian unstable/main amd64 libb-keywords-perl all 1.29-1 [12.5 kB] Get:378 http://deb.debian.org/debian unstable/main amd64 libclass-tiny-perl all 1.008-2 [18.6 kB] Get:379 http://deb.debian.org/debian unstable/main amd64 liblingua-en-inflect-perl all 1.905-2 [52.7 kB] Get:380 http://deb.debian.org/debian unstable/main amd64 libpod-spell-perl all 1.27-1 [32.0 kB] Get:381 http://deb.debian.org/debian unstable/main amd64 libsafe-isa-perl all 1.000010-1 [8288 B] Get:382 http://deb.debian.org/debian unstable/main amd64 libtask-weaken-perl all 1.06-2 [9364 B] Get:383 http://deb.debian.org/debian unstable/main amd64 libppi-perl all 1.291-1 [300 kB] Get:384 http://deb.debian.org/debian unstable/main amd64 libreadonly-perl all 2.050-3 [23.1 kB] Get:385 http://deb.debian.org/debian unstable/main amd64 libppix-quotelike-perl all 0.024-1 [64.7 kB] Get:386 http://deb.debian.org/debian unstable/main amd64 libppix-regexp-perl all 0.092-1 [245 kB] Get:387 http://deb.debian.org/debian unstable/main amd64 libppix-utils-perl all 0.003-2 [28.0 kB] Get:388 http://deb.debian.org/debian unstable/main amd64 libstring-format-perl all 1.18-1 [9408 B] Get:389 http://deb.debian.org/debian unstable/main amd64 perltidy all 20250105-1 [706 kB] Get:390 http://deb.debian.org/debian unstable/main amd64 libperl-critic-perl all 1.156-1 [685 kB] Get:391 http://deb.debian.org/debian unstable/main amd64 libtext-wrapper-perl all 1.05-4 [10.3 kB] Get:392 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.12.2+dfsg-1 [33.7 kB] Get:393 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.12.2+dfsg-1 [50.6 kB] Get:394 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7+b2 [206 kB] Get:395 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.1.0-2 [877 kB] Get:396 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7+b2 [2546 kB] Get:397 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-6+b2 [105 kB] Get:398 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.12.2+dfsg-1 [49.4 kB] Get:399 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.12.2+dfsg-1 [47.5 kB] Get:400 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.12.2+dfsg-1 [42.5 kB] Get:401 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.12.2+dfsg-1 [678 kB] Get:402 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.12.2+dfsg-1 [95.5 kB] Get:403 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.11-1 [713 kB] Get:404 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.11-1 [738 kB] Get:405 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-5+b1 [176 kB] Get:406 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.25.0-2 [29.2 kB] Get:407 http://deb.debian.org/debian unstable/main amd64 libdecor-0-0 amd64 0.2.5-1+b1 [15.8 kB] Get:408 http://deb.debian.org/debian unstable/main amd64 libwayland-cursor0 amd64 1.25.0-2 [11.7 kB] Get:409 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b5 [20.3 kB] Get:410 http://deb.debian.org/debian unstable/main amd64 libxcursor1 amd64 1:1.2.3-1+b2 [40.3 kB] Get:411 http://deb.debian.org/debian unstable/main amd64 libxinerama1 amd64 2:1.1.4-3+b5 [16.0 kB] Get:412 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.47-1 [835 kB] Get:413 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.13.1-1 [148 kB] Get:414 http://deb.debian.org/debian unstable/main amd64 libfltk1.4 amd64 1.4.4-4 [595 kB] Get:415 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-3+b1 [54.3 kB] Get:416 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.134-2 [7840 B] Get:417 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.134-2 [38.5 kB] Get:418 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.134-2 [23.3 kB] Get:419 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b4 [52.1 kB] Get:420 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.134-2 [64.2 kB] Get:421 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1.1 [8644 kB] Get:422 http://deb.debian.org/debian unstable/main amd64 libllvm21 amd64 1:21.1.8-7+b3 [28.2 MB] Get:423 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:424 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.2-2+b2 [37.2 kB] Get:425 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.13-1 [250 kB] Get:426 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b2 [107 kB] Get:427 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b2 [106 kB] Get:428 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b2 [117 kB] Get:429 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b2 [109 kB] Get:430 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b2 [109 kB] Get:431 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3.3-1+b2 [11.2 kB] Get:432 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 26.1.2-1 [10.6 MB] Get:433 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 26.1.2-1 [54.8 kB] Get:434 http://deb.debian.org/debian unstable/main amd64 libegl-mesa0 amd64 26.1.2-1 [133 kB] Get:435 http://deb.debian.org/debian unstable/main amd64 libegl1 amd64 1.7.0-3+b1 [35.0 kB] Get:436 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.4.341.0-1 [141 kB] Get:437 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 26.1.2-1 [44.3 kB] Get:438 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b2 [122 kB] Get:439 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-2+b1 [20.2 kB] Get:440 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 26.1.2-1 [125 kB] Get:441 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-3+b1 [34.9 kB] Get:442 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-3+b1 [87.1 kB] Get:443 http://deb.debian.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-3+b1 [30.4 kB] Get:444 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1+b4 [191 kB] Get:445 http://deb.debian.org/debian unstable/main amd64 libwayland-egl1 amd64 1.25.0-2 [5604 B] Get:446 http://deb.debian.org/debian unstable/main amd64 libfltk-gl1.4 amd64 1.4.4-4 [85.6 kB] Get:447 http://deb.debian.org/debian unstable/main amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-4+b1 [43.0 kB] Get:448 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.5.4-11 [416 kB] Get:449 http://deb.debian.org/debian unstable/main amd64 libglpk40 amd64 5.0-2+b2 [392 kB] Get:450 http://deb.debian.org/debian unstable/main amd64 libhwy1t64 amd64 1.3.0-2+b1 [707 kB] Get:451 http://deb.debian.org/debian unstable/main amd64 libjxl0.11 amd64 0.11.2-5 [1256 kB] Get:452 http://deb.debian.org/debian unstable/main amd64 libwmflite-0.2-7 amd64 0.2.14-1 [74.1 kB] Get:453 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:454 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.6+repack-2+b1 [1357 kB] Get:455 http://deb.debian.org/debian unstable/main amd64 libasound2-data all 1.2.16-1 [19.3 kB] Get:456 http://deb.debian.org/debian unstable/main amd64 libasound2t64 amd64 1.2.16-1 [397 kB] Get:457 http://deb.debian.org/debian unstable/main amd64 libopus0 amd64 1.6.1-1+b1 [3484 kB] Get:458 http://deb.debian.org/debian unstable/main amd64 libsamplerate0 amd64 0.2.2-4+b3 [954 kB] Get:459 http://deb.debian.org/debian unstable/main amd64 libjack-jackd2-0 amd64 1.9.22~dfsg-5+b2 [288 kB] Get:460 http://deb.debian.org/debian unstable/main amd64 libportaudio2 amd64 19.7.0-1+b1 [65.0 kB] Get:461 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:462 http://deb.debian.org/debian unstable/main amd64 libqrupdate1 amd64 1.1.5-3+b1 [40.2 kB] Get:463 http://deb.debian.org/debian unstable/main amd64 libqscintilla2-qt6-l10n all 2.14.1+dfsg-3 [103 kB] Get:464 http://deb.debian.org/debian unstable/main amd64 libb2-1 amd64 0.98.1-1.1+b3 [42.0 kB] Get:465 http://deb.debian.org/debian unstable/main amd64 libdouble-conversion3 amd64 3.4.0-1+b1 [40.7 kB] Get:466 http://deb.debian.org/debian unstable/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:467 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.46-1+b2 [280 kB] Get:468 http://deb.debian.org/debian unstable/main amd64 libqt6core6t64 amd64 6.10.2+dfsg-15 [1916 kB] Get:469 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get:470 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:471 http://deb.debian.org/debian unstable/main amd64 libevdev2 amd64 1.13.6+dfsg-2 [31.9 kB] Get:472 http://deb.debian.org/debian unstable/main amd64 libmtdev1t64 amd64 1.1.7-1+b2 [23.2 kB] Get:473 http://deb.debian.org/debian unstable/main amd64 libgudev-1.0-0 amd64 238-7+b2 [14.4 kB] Get:474 http://deb.debian.org/debian unstable/main amd64 libwacom-common all 2.18.0-1 [117 kB] Get:475 http://deb.debian.org/debian unstable/main amd64 libwacom9 amd64 2.18.0-1 [27.0 kB] Get:476 http://deb.debian.org/debian unstable/main amd64 libinput-bin amd64 1.31.3-1 [28.0 kB] Get:477 http://deb.debian.org/debian unstable/main amd64 libinput10 amd64 1.31.3-1 [160 kB] Get:478 http://deb.debian.org/debian unstable/main amd64 libmd4c0 amd64 0.5.3-1 [49.5 kB] Get:479 http://deb.debian.org/debian unstable/main amd64 libqt6dbus6 amd64 6.10.2+dfsg-15 [272 kB] Get:480 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:481 http://deb.debian.org/debian unstable/main amd64 libts0t64 amd64 1.22-1.1+b2 [61.9 kB] Get:482 http://deb.debian.org/debian unstable/main amd64 libxcb-util1 amd64 0.4.1-1+b2 [23.8 kB] Get:483 http://deb.debian.org/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b3 [22.3 kB] Get:484 http://deb.debian.org/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.10-1+b2 [18.7 kB] Get:485 http://deb.debian.org/debian unstable/main amd64 libxcb-cursor0 amd64 0.1.6-1 [17.8 kB] Get:486 http://deb.debian.org/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.2-1+b2 [27.7 kB] Get:487 http://deb.debian.org/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.1-1+b2 [17.0 kB] Get:488 http://deb.debian.org/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2+b2 [106 kB] Get:489 http://deb.debian.org/debian unstable/main amd64 libxcb-xinput0 amd64 1.17.0-2+b2 [130 kB] Get:490 http://deb.debian.org/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2+b2 [130 kB] Get:491 http://deb.debian.org/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.13.1-1 [21.0 kB] Get:492 http://deb.debian.org/debian unstable/main amd64 libqt6gui6 amd64 6.10.2+dfsg-15 [3307 kB] Get:493 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-18 [113 kB] Get:494 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-18 [45.2 kB] Get:495 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-18 [49.2 kB] Get:496 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.18-1 [252 kB] Get:497 http://deb.debian.org/debian unstable/main amd64 libqt6widgets6 amd64 6.10.2+dfsg-15 [2654 kB] Get:498 http://deb.debian.org/debian unstable/main amd64 libqt6printsupport6 amd64 6.10.2+dfsg-15 [217 kB] Get:499 http://deb.debian.org/debian unstable/main amd64 libqscintilla2-qt6-15 amd64 2.14.1+dfsg-3 [1183 kB] Get:500 http://deb.debian.org/debian unstable/main amd64 libqt6core5compat6 amd64 6.10.2-3 [139 kB] Get:501 http://deb.debian.org/debian unstable/main amd64 libqt6sql6 amd64 6.10.2+dfsg-15 [145 kB] Get:502 http://deb.debian.org/debian unstable/main amd64 libqt6help6 amd64 6.10.2-3 [187 kB] Get:503 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.21.0-1 [16.9 kB] Get:504 http://deb.debian.org/debian unstable/main amd64 libduktape207 amd64 2.7.0-2+b3 [134 kB] Get:505 http://deb.debian.org/debian unstable/main amd64 libproxy1v5 amd64 0.5.12-1+b1 [24.6 kB] Get:506 http://deb.debian.org/debian unstable/main amd64 libqt6network6 amd64 6.10.2+dfsg-15 [811 kB] Get:507 http://deb.debian.org/debian unstable/main amd64 libqt6opengl6 amd64 6.10.2+dfsg-15 [415 kB] Get:508 http://deb.debian.org/debian unstable/main amd64 libqt6openglwidgets6 amd64 6.10.2+dfsg-15 [47.2 kB] Get:509 http://deb.debian.org/debian unstable/main amd64 libqt6xml6 amd64 6.10.2+dfsg-15 [83.9 kB] Get:510 http://deb.debian.org/debian unstable/main amd64 libogg0 amd64 1.3.6-2+b1 [24.0 kB] Get:511 http://deb.debian.org/debian unstable/main amd64 libflac14 amd64 1.5.0+ds-5+b1 [179 kB] Get:512 http://deb.debian.org/debian unstable/main amd64 libmpg123-0t64 amd64 1.33.6-1 [154 kB] Get:513 http://deb.debian.org/debian unstable/main amd64 libmp3lame0 amd64 3.101~svn6531+dfsg-1 [285 kB] Get:514 http://deb.debian.org/debian unstable/main amd64 libvorbis0a amd64 1.3.7-3+b2 [93.2 kB] Get:515 http://deb.debian.org/debian unstable/main amd64 libvorbisenc2 amd64 1.3.7-3+b2 [76.1 kB] Get:516 http://deb.debian.org/debian unstable/main amd64 libsndfile1 amd64 1.2.2-4+b1 [205 kB] Get:517 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.12.2+dfsg-1 [156 kB] Get:518 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.12.2+dfsg-1 [298 kB] Get:519 http://deb.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get:520 http://deb.debian.org/debian unstable/main amd64 libintl-perl all 1.37-1 [696 kB] Get:521 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.20 [29.7 kB] Get:522 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.3-2 [1877 kB] Get:523 http://deb.debian.org/debian unstable/main amd64 octave-common all 11.3.0-1 [6779 kB] Get:524 http://deb.debian.org/debian unstable/main amd64 octave amd64 11.3.0-1 [9527 kB] Get:525 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.6+20251231-1+b1 [107 kB] Get:526 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.6+20251231-1+b1 [356 kB] Get:527 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.3-4 [163 kB] Get:528 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.6+repack-2+b1 [107 kB] Get:529 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.6+repack-2+b1 [63.3 kB] Get:530 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.6+repack-2+b1 [38.1 kB] Get:531 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.6+repack-2+b1 [130 kB] Get:532 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.6+repack-2+b1 [18.5 kB] Get:533 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:534 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:3.1.3-4 [356 kB] Get:535 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:3.1.3-4 [78.8 kB] Get:536 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.7-1 [22.3 kB] Get:537 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.7-1 [25.2 kB] Get:538 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.2.0-3 [324 kB] Get:539 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-5 [102 kB] Get:540 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.22.1-3 [58.3 kB] Get:541 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.22.1-3 [40.3 kB] Get:542 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.22.1-3 [41.3 kB] Get:543 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.22.1-3 [54.1 kB] Get:544 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.22.1-3 [125 kB] Get:545 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.22.1-3 [14.0 kB] Get:546 http://deb.debian.org/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:547 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:548 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:549 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.69.0-1 [128 kB] Get:550 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.15.0-1 [94.5 kB] Get:551 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl-dev amd64 1.22.1-1 [24.2 kB] Get:552 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.22.1-1 [192 kB] Get:553 http://deb.debian.org/debian unstable/main amd64 libunistring-dev amd64 1.4.2-1 [651 kB] Get:554 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.22.0-1 [29.8 kB] Get:555 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.6-1 [60.3 kB] Get:556 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5+b2 [328 kB] Get:557 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5+b2 [641 kB] Get:558 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b2 [184 kB] Get:559 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.25.1-1 [619 kB] Get:560 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.13-1 [496 kB] Get:561 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.26.2-3 [222 kB] Get:562 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.21.0-2+b1 [98.6 kB] Get:563 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.2-1+b1 [1321 kB] Get:564 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.13-1 [1479 kB] Get:565 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.6-1 [69.7 kB] Get:566 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.6.3-1 [3025 kB] Get:567 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-4 [393 kB] Get:568 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-3+b2 [372 kB] Get:569 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.21.0-1 [549 kB] Get:570 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.6+repack-2+b1 [20.6 kB] Get:571 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.6+repack-2+b1 [3196 kB] Get:572 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.12.1-1 [23.9 kB] Get:573 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2025.1-1 [605 kB] Get:574 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1+b2 [23.9 kB] Get:575 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-2+b1 [44.0 kB] Get:576 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB] Get:577 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b2 [181 kB] Get:578 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.13-1 [903 kB] Get:579 http://deb.debian.org/debian unstable/main amd64 libglx-dev amd64 1.7.0-3+b1 [15.0 kB] Get:580 http://deb.debian.org/debian unstable/main amd64 libgl-dev amd64 1.7.0-3+b1 [99.8 kB] Get:581 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-7+b2 [219 kB] Get:582 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7+b2 [5225 kB] Get:583 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.11-1 [313 kB] Get:584 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.11-1 [554 kB] Get:585 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.11-1 [46.6 kB] Get:586 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.11-1 [2063 kB] Get:587 http://deb.debian.org/debian unstable/main amd64 libgfortran-15-dev amd64 15.3.0-1 [877 kB] Get:588 http://deb.debian.org/debian unstable/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.3.0-1 [12.8 MB] Get:589 http://deb.debian.org/debian unstable/main amd64 gfortran-15 amd64 15.3.0-1 [22.2 kB] Get:590 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-5+b1 [1284 B] Get:591 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:15.2.0-5+b1 [1440 B] Get:592 http://deb.debian.org/debian unstable/main amd64 octave-dev amd64 11.3.0-1 [1114 kB] Get:593 http://deb.debian.org/debian unstable/main amd64 dh-octave all 1.15.0 [24.3 kB] Get:594 http://deb.debian.org/debian unstable/main amd64 dh-python all 7.20260623 [114 kB] Get:595 http://deb.debian.org/debian unstable/main amd64 libclang-cpp21 amd64 1:21.1.8-7+b3 [12.8 MB] Get:596 http://deb.debian.org/debian unstable/main amd64 libclang1-21 amd64 1:21.1.8-7+b3 [7702 kB] Get:597 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4+b2 [126 kB] Get:598 http://deb.debian.org/debian unstable/main amd64 libspdlog1.15 amd64 1:1.15.3+ds-1+b2 [107 kB] Get:599 http://deb.debian.org/debian unstable/main amd64 libxapian30 amd64 1.4.31-2 [1172 kB] Get:600 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.15.0+ds1-1.1 [5544 kB] Get:601 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 78.3-2 [212 kB] Get:602 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6+b2 [33.6 kB] Get:603 http://deb.debian.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.5.1-1+b1 [127 kB] Get:604 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.25-1 [56.7 kB] Get:605 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.8.2-1 [177 kB] Get:606 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 78.3-2 [11.1 MB] Get:607 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 9.1.0-4 [45.7 kB] Get:608 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.3-1 [369 kB] Get:609 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:610 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:611 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.46-1+b2 [267 kB] Get:612 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.46-1+b2 [63.3 kB] Get:613 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.46-1+b2 [846 kB] Get:614 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.58-1 [372 kB] Get:615 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.14-1 [2191 kB] Get:616 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.14-1 [5288 kB] Get:617 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.9-3+b1 [8588 B] Get:618 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:619 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:620 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:621 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.7+ds-1 [190 kB] Get:622 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:623 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:624 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:625 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.15.3+dfsg-1 [746 kB] Get:626 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-4+b1 [22.0 kB] Get:627 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:628 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.14-1 [504 kB] Get:629 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.9-3+b1 [29.8 kB] Get:630 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-15 [235 kB] Get:631 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:632 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.6.1-1 [28.4 MB] Get:633 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Get:634 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.6.1-1 [2048 B] Get:635 http://deb.debian.org/debian unstable/main amd64 rdfind amd64 1.6.0-1+b1 [44.7 kB] Get:636 http://deb.debian.org/debian unstable/main amd64 swig amd64 4.4.1-2 [1508 kB] Preconfiguring packages ... Fetched 484 MB in 3s (154 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 14526 files and directories currently installed.) Preparing to unpack .../libexpat1_2.8.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.2-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.14-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.14-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.14-1_amd64.deb ... Unpacking python3.13-minimal (3.13.14-1) ... Setting up libpython3.13-minimal:amd64 (3.13.14-1) ... Setting up libexpat1:amd64 (2.8.2-1) ... Setting up python3.13-minimal (3.13.14-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14860 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.9-3+b1_amd64.deb ... 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Selecting previously unselected package libeval-closure-perl. Preparing to unpack .../236-libeval-closure-perl_0.14-3_all.deb ... Unpacking libeval-closure-perl (0.14-3) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../237-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../238-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../239-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libparams-validationcompiler-perl. Preparing to unpack .../240-libparams-validationcompiler-perl_0.31-1_all.deb ... Unpacking libparams-validationcompiler-perl (0.31-1) ... Selecting previously unselected package libclone-pp-perl. Preparing to unpack .../241-libclone-pp-perl_1.08-2_all.deb ... Unpacking libclone-pp-perl (1.08-2) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../242-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../243-librole-tiny-perl_2.002005-1_all.deb ... Unpacking librole-tiny-perl (2.002005-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../244-libsub-quote-perl_2.006009-1_all.deb ... Unpacking libsub-quote-perl (2.006009-1) ... Selecting previously unselected package libxstring-perl:amd64. Preparing to unpack .../245-libxstring-perl_0.005-2+b6_amd64.deb ... Unpacking libxstring-perl:amd64 (0.005-2+b6) ... Selecting previously unselected package libspecio-perl. 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Preparing to unpack .../256-libindirect-perl_0.39-2+b5_amd64.deb ... Unpacking libindirect-perl (0.39-2+b5) ... Selecting previously unselected package libxs-parse-keyword-perl. Preparing to unpack .../257-libxs-parse-keyword-perl_0.49-1+b1_amd64.deb ... Unpacking libxs-parse-keyword-perl (0.49-1+b1) ... Selecting previously unselected package libxs-parse-sublike-perl:amd64. Preparing to unpack .../258-libxs-parse-sublike-perl_0.41-1+b2_amd64.deb ... Unpacking libxs-parse-sublike-perl:amd64 (0.41-1+b2) ... Selecting previously unselected package libobject-pad-perl. Preparing to unpack .../259-libobject-pad-perl_0.825-1+b1_amd64.deb ... Unpacking libobject-pad-perl (0.825-1+b1) ... Selecting previously unselected package libfeature-compat-class-perl. Preparing to unpack .../260-libfeature-compat-class-perl_0.08-1_all.deb ... Unpacking libfeature-compat-class-perl (0.08-1) ... Selecting previously unselected package libsyntax-keyword-try-perl. 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Unpacking libpod-constants-perl (0.19-2) ... Selecting previously unselected package libset-intspan-perl. Preparing to unpack .../271-libset-intspan-perl_1.19-3_all.deb ... Unpacking libset-intspan-perl (1.19-3) ... Selecting previously unselected package libstring-copyright-perl. Preparing to unpack .../272-libstring-copyright-perl_0.003014-1_all.deb ... Unpacking libstring-copyright-perl (0.003014-1) ... Selecting previously unselected package libstring-escape-perl. Preparing to unpack .../273-libstring-escape-perl_2010.002-3_all.deb ... Unpacking libstring-escape-perl (2010.002-3) ... Selecting previously unselected package libregexp-pattern-license-perl. Preparing to unpack .../274-libregexp-pattern-license-perl_3.11.2-1_all.deb ... Unpacking libregexp-pattern-license-perl (3.11.2-1) ... Selecting previously unselected package libregexp-pattern-perl. Preparing to unpack .../275-libregexp-pattern-perl_0.2.14-3_all.deb ... Unpacking libregexp-pattern-perl (0.2.14-3) ... Selecting previously unselected package libstring-license-perl. Preparing to unpack .../276-libstring-license-perl_0.0.11-1_all.deb ... Unpacking libstring-license-perl (0.0.11-1) ... Selecting previously unselected package licensecheck. Preparing to unpack .../277-licensecheck_3.3.9-1_all.deb ... Unpacking licensecheck (3.3.9-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../278-diffstat_1.69-1_amd64.deb ... Unpacking diffstat (1.69-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../279-iso-codes_4.20.1-1_all.deb ... Unpacking iso-codes (4.20.1-1) ... Selecting previously unselected package libberkeleydb-perl:amd64. Preparing to unpack .../280-libberkeleydb-perl_0.66-2+b2_amd64.deb ... Unpacking libberkeleydb-perl:amd64 (0.66-2+b2) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../281-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../282-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:amd64. Preparing to unpack .../283-libcpanel-json-xs-perl_4.42-1+b1_amd64.deb ... Unpacking libcpanel-json-xs-perl:amd64 (4.42-1+b1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../284-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../285-libclass-xsaccessor-perl_1.19-4+b6_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b6) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../286-libiterator-perl_0.03+ds1-2_all.deb ... Unpacking libiterator-perl (0.03+ds1-2) ... Selecting previously unselected package libiterator-util-perl. 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Unpacking libnet-netmask-perl (2.0003-1) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../293-libnetaddr-ip-perl_4.079+dfsg-2+b6_amd64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b6) ... Selecting previously unselected package libdata-validate-ip-perl. Preparing to unpack .../294-libdata-validate-ip-perl_0.31-1_all.deb ... Unpacking libdata-validate-ip-perl (0.31-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../295-libdata-validate-uri-perl_0.07-3_all.deb ... Unpacking libdata-validate-uri-perl (0.07-3) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../296-libdevel-size-perl_0.87-1+b1_amd64.deb ... Unpacking libdevel-size-perl (0.87-1+b1) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../297-libemail-address-xs-perl_1.05-1+b5_amd64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b5) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../298-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../299-libfile-basedir-perl_0.09-2_all.deb ... Unpacking libfile-basedir-perl (0.09-2) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../300-libfile-find-rule-perl_0.35-1_all.deb ... Unpacking libfile-find-rule-perl (0.35-1) ... Selecting previously unselected package libfile-libmagic-perl. Preparing to unpack .../301-libfile-libmagic-perl_1.23-2+b3_amd64.deb ... Unpacking libfile-libmagic-perl (1.23-2+b3) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../302-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../303-libfont-ttf-perl_1.06-2_all.deb ... Unpacking libfont-ttf-perl (1.06-2) ... Selecting previously unselected package libhtml-html5-entities-perl. Preparing to unpack .../304-libhtml-html5-entities-perl_0.004-3_all.deb ... Unpacking libhtml-html5-entities-perl (0.004-3) ... Selecting previously unselected package libhtml-tokeparser-simple-perl. Preparing to unpack .../305-libhtml-tokeparser-simple-perl_3.16-4_all.deb ... Unpacking libhtml-tokeparser-simple-perl (3.16-4) ... Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../306-libipc-run3-perl_0.049-1_all.deb ... Unpacking libipc-run3-perl (0.049-1) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../307-libjson-maybexs-perl_1.004008-1_all.deb ... Unpacking libjson-maybexs-perl (1.004008-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../308-liblist-compare-perl_0.55-2_all.deb ... 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Preparing to unpack .../319-libregexp-wildcards-perl_1.05-3_all.deb ... Unpacking libregexp-wildcards-perl (1.05-3) ... Selecting previously unselected package libsereal-decoder-perl. Preparing to unpack .../320-libsereal-decoder-perl_5.006+ds-1+b1_amd64.deb ... Unpacking libsereal-decoder-perl (5.006+ds-1+b1) ... Selecting previously unselected package libsereal-encoder-perl. Preparing to unpack .../321-libsereal-encoder-perl_5.006+ds-1+b1_amd64.deb ... Unpacking libsereal-encoder-perl (5.006+ds-1+b1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../322-libterm-readkey-perl_2.38-2+b5_amd64.deb ... Unpacking libterm-readkey-perl (2.38-2+b5) ... Selecting previously unselected package libtext-levenshteinxs-perl. Preparing to unpack .../323-libtext-levenshteinxs-perl_0.03-5+b5_amd64.deb ... Unpacking libtext-levenshteinxs-perl (0.03-5+b5) ... Selecting previously unselected package libmarkdown2:amd64. 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Preparing to unpack .../329-libtime-moment-perl_0.46-1+b1_amd64.deb ... Unpacking libtime-moment-perl (0.46-1+b1) ... Selecting previously unselected package libunicode-utf8-perl. Preparing to unpack .../330-libunicode-utf8-perl_0.70-2+b1_amd64.deb ... Unpacking libunicode-utf8-perl (0.70-2+b1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../331-libcgi-pm-perl_4.72-1_all.deb ... Unpacking libcgi-pm-perl (4.72-1) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../332-libhtml-form-perl_6.13-1_all.deb ... Unpacking libhtml-form-perl (6.13-1) ... Selecting previously unselected package libwww-mechanize-perl. Preparing to unpack .../333-libwww-mechanize-perl_2.22-1_all.deb ... Unpacking libwww-mechanize-perl (2.22-1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../334-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... 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Setting up libyaml-pp-perl (0.41.0-1) ... Setting up libxcb-glx0:amd64 (1.17.0-2+b2) ... Setting up libdevel-size-perl (0.87-1+b1) ... Setting up unzip (6.0-29) ... Setting up libdebhelper-perl (14.2) ... Setting up libbrotli1:amd64 (1.2.0-3) ... Setting up libregexp-pattern-license-perl (3.11.2-1) ... Setting up rdfind (1.6.0-1+b1) ... Setting up libconvert-binhex-perl (1.125-3) ... Setting up libpkgconf7:amd64 (2.5.1-4) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libuv1t64:amd64 (1.52.1-4) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up libyaml-libyaml-perl (0.907.0+ds-1+b1) ... Setting up fonts-freefont-otf (20211204+svn4273-4) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libxcb-keysyms1:amd64 (0.4.1-1+b2) ... Setting up libjs-jquery-ui-theme-base (1.14.2+dfsg-1) ... Setting up libxcb-shape0:amd64 (1.17.0-2+b2) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up libtry-tiny-perl (0.32-1) ... Setting up libsensors-config (1:3.6.2-2) ... Setting up libpsl5t64:amd64 (0.22.0-1) ... Setting up libnghttp2-14:amd64 (1.69.0-1) ... Setting up libdeflate0:amd64 (1.25-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libfftw3-long3:amd64 (3.3.11-1) ... Setting up gettext-base (1.0-1) ... Setting up m4 (1.4.21-1) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b2) ... Setting up libclone-choose-perl (0.010-2) ... Setting up libqhull-r8.0:amd64 (2020.2-9) ... Setting up libxcb-render-util0:amd64 (0.3.10-1+b2) ... Setting up xkb-data (2.47-1) ... Setting up liblzo2-2:amd64 (2.10-3+b2) ... Setting up libclass-singleton-perl (1.6-2) ... Setting up libtime-moment-perl (0.46-1+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b2) ... Setting up libxcb-icccm4:amd64 (0.4.2-1+b2) ... Setting up libcom-err2:amd64 (1.47.4-1) ... Setting up file (1:5.47-4) ... Setting up texinfo-lib (7.3-2+b1) ... Setting up libtext-wrapper-perl (1.05-4) ... Setting up libxstring-perl:amd64 (0.005-2+b6) ... Setting up libmpg123-0t64:amd64 (1.33.6-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.006+ds-1+b1) ... Setting up libsubunit0:amd64 (1.4.4+1-1+b1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libyaml-tiny-perl (1.76-1) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libjbig0:amd64 (2.1-6.1+b3) ... Setting up octave-common (11.3.0-1) ... Setting up libregexp-common-perl (2024080801-1) ... Setting up libpcre2-16-0:amd64 (10.46-1+b2) ... Setting up libaec0:amd64 (1.1.7-1) ... Setting up libnet-netmask-perl (2.0003-1) ... Setting up libopengl0:amd64 (1.7.0-3+b1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up libxcb-util1:amd64 (0.4.1-1+b2) ... Setting up libindirect-perl (0.39-2+b5) ... Setting up libfyaml0:amd64 (0.9.4-1) ... Setting up libxcb-xkb1:amd64 (1.17.0-2+b2) ... Setting up libxcb-image0:amd64 (0.4.0-2+b3) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up librav1e0.8:amd64 (0.8.1-10) ... Setting up tzdata (2026b-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jun 27 19:39:17 UTC 2026. Universal Time is now: Sat Jun 27 19:39:17 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libicu78:amd64 (78.3-2) ... Setting up libxcb-present0:amd64 (1.17.0-2+b2) ... Setting up liberror-perl (0.17030-1) ... Setting up libasound2-data (1.2.16-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libreadonly-perl (2.050-3) ... Setting up libboolean-perl (0.46-3) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b6) ... Setting up xtrans-dev (1.6.0-1) ... Setting up zip (3.0-15) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up libz3-4:amd64 (4.13.3-1.1) ... Setting up libpcre2-32-0:amd64 (10.46-1+b2) ... Setting up libglib2.0-0t64:amd64 (2.88.2-1) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libunbound8:amd64 (1.25.1-1) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5+b2) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libasound2t64:amd64 (1.2.16-1) ... Setting up liblog-log4perl-perl (1.57-1) ... Setting up libtext-reform-perl (1.20-5) ... Setting up libexpat1-dev:amd64 (2.8.2-1) ... Setting up libjpeg62-turbo:amd64 (1:3.1.3-4) ... Setting up libclass-tiny-perl (1.008-2) ... Setting up libgnutls-dane0t64:amd64 (3.8.13-1) ... Setting up libx11-data (2:1.8.13-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:3.1.3-4) ... Setting up libnspr4:amd64 (2:4.38.2-1+b1) ... Setting up libfile-find-rule-perl (0.35-1) ... Setting up libxcb-sync1:amd64 (1.17.0-2+b2) ... Setting up librtmp1:amd64 (2.6-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libio-tiecombine-perl (1.005-3) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b4) ... Setting up libjsoncpp26:amd64 (1.9.7-4) ... Setting up libldap-dev:amd64 (2.6.13+dfsg-1+b1) ... Setting up libpathplan4:amd64 (14.1.2-1+b2) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libstring-format-perl (1.18-1) ... Setting up libxcb-cursor0:amd64 (0.1.6-1) ... Setting up libavahi-common-data:amd64 (0.8-18) ... Setting up libncurses6:amd64 (6.6+20251231-1+b1) ... Setting up libdbus-1-3:amd64 (1.16.2-5+b1) ... Setting up libfftw3-quad3:amd64 (3.3.11-1) ... Setting up libfribidi0:amd64 (1.0.16-5+b1) ... Setting up libopus0:amd64 (1.6.1-1+b1) ... Setting up t1utils (1.41-4) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up diffstat (1.69-1) ... Setting up libimagequant0:amd64 (4.4.1-1+b2) ... Setting up libproc2-0:amd64 (2:4.0.4-9+b2) ... Setting up comerr-dev:amd64 (2.1-1.47.4-1) ... Setting up libssl-dev:amd64 (3.6.3-1) ... Setting up libpng16-16t64:amd64 (1.6.58-1) ... Setting up libvorbis0a:amd64 (1.3.7-3+b2) ... Setting up libvariable-magic-perl (0.64-1+b2) ... Setting up libio-html-perl (1.004-3) ... Setting up libtext-template-perl (1.61-1) ... Setting up libpod-parser-perl (1.67-1) ... Setting up libtcl8.6:amd64 (8.6.18+dfsg-1) ... Setting up autopoint (1.0-1) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b5) ... Setting up icu-devtools (78.3-2) ... Setting up libflac14:amd64 (1.5.0+ds-5+b1) ... Setting up libfile-libmagic-perl (1.23-2+b3) ... Setting up liblist-moreutils-xs-perl (0.430-4+b3) ... Setting up libpcsclite1:amd64 (2.5.1-1) ... Setting up pkgconf-bin (2.5.1-4) ... Setting up libsensors5:amd64 (1:3.6.2-2+b2) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libqscintilla2-qt6-l10n (2.14.1+dfsg-3) ... Setting up libltdl7:amd64 (2.5.4-11) ... Setting up libsvtav1enc4:amd64 (4.1.0+dfsg-1) ... Setting up libidn2-dev:amd64 (2.3.8-5) ... Setting up libfftw3-double3:amd64 (3.3.11-1) ... Setting up libb-keywords-perl (1.29-1) ... Setting up libjs-sphinxdoc (9.1.0-4) ... Setting up libparams-util-perl (1.102-3+b2) ... Setting up libgfortran5:amd64 (16.1.0-2) ... Setting up libvulkan1:amd64 (1.4.341.0-1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up autoconf (2.73-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2+b3) ... Setting up libnghttp3-9:amd64 (1.15.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcgraph8:amd64 (14.1.2-1+b2) ... Setting up libwebp7:amd64 (1.5.0-0.1+b2) ... Setting up libarray-intspan-perl (2.004-2) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libnghttp3-dev:amd64 (1.15.0-1) ... Setting up libtimedate-perl (2.3500-1) ... Setting up libexporter-lite-perl (0.09-2) ... Setting up liblzma-dev:amd64 (5.8.3-1) ... Setting up libsub-name-perl:amd64 (0.28-1+b3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Setting up libgvpr2:amd64 (14.1.2-1+b2) ... Setting up libpcre2-posix3:amd64 (10.46-1+b2) ... Setting up dwz (0.16-4) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:amd64 (0.637-1+b3) ... Setting up libparse-recdescent-perl (1.967015+dfsg-4) ... Setting up libdav1d7:amd64 (1.5.3-1+b2) ... Setting up libmtdev1t64:amd64 (1.1.7-1+b2) ... Setting up sensible-utils (0.0.26) ... Setting up libduktape207:amd64 (2.7.0-2+b3) ... Setting up libxshmfence1:amd64 (1.3.3-1+b2) ... Setting up libcrypt-dev:amd64 (1:4.5.1-1+b1) ... Setting up libtiff6:amd64 (4.7.1-3) ... Setting up libxcb-randr0:amd64 (1.17.0-2+b2) ... Setting up libpath-tiny-perl (0.150-1) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up lzop (1.04-2) ... Setting up procps (2:4.0.4-9+b2) ... Setting up libjson-perl (4.10000-1) ... Setting up liblog-any-adapter-screen-perl (0.141-2) ... Setting up librole-tiny-perl (2.002005-1) ... Setting up libintl-perl (1.37-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libmd4c0:amd64 (0.5.3-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libmousex-strictconstructor-perl (0.02-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libsuitesparseconfig7:amd64 (1:7.12.2+dfsg-1) ... Setting up liblua5.4-0:amd64 (5.4.8-2) ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Setting up libaliased-perl (0.34-3) ... Setting up libthai-data (0.1.30-1) ... Setting up xorg-sgml-doctools (1:1.12.1-1) ... Setting up libabsl20260107:amd64 (20260107.0-5) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.22.1-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b6) ... Setting up librhash1:amd64 (1.4.6-1.1+b1) ... Setting up libpod-spell-perl (1.27-1) ... Setting up libtext-autoformat-perl (1.750000-2) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libglu1-mesa:amd64 (9.0.2-1.1+b4) ... Setting up libwayland-egl1:amd64 (1.25.0-2) ... Setting up libstemmer0d:amd64 (3.1.1-1) ... Setting up libpaper2:amd64 (2.2.5-0.4) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-4) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up libexporter-tiny-perl (1.006003-1) ... Setting up libterm-readkey-perl (2.38-2+b5) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libde265-0:amd64 (1.0.18-1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libsamplerate0:amd64 (0.2.2-4+b3) ... Setting up libtasn1-6-dev:amd64 (4.21.0-2+b1) ... Setting up openssl (3.6.3-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1+b2) ... Setting up libbsd0:amd64 (0.12.2-3) ... Setting up libtext-levenshteinxs-perl (0.03-5+b5) ... Setting up libdeflate-dev:amd64 (1.25-1) ... Setting up libperlio-gzip-perl (0.20-1+b5) ... Setting up libdrm-common (2.4.134-2) ... Setting up libyuv0:amd64 (0.0.1922.20260106-1+b1) ... Setting up libarchive13t64:amd64 (3.8.7-1) ... Setting up libjxl0.11:amd64 (0.11.2-5) ... Setting up libpython3.13-stdlib:amd64 (3.13.14-1) ... Setting up libevdev2:amd64 (1.13.6+dfsg-2) ... Setting up libicu-dev:amd64 (78.3-2) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libtext-levenshtein-damerau-perl (0.41-3) ... Setting up libsereal-decoder-perl (5.006+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2.1+b2) ... Setting up liburi-perl (5.35-1) ... Setting up iso-codes (4.20.1-1) ... Setting up libxmuu1:amd64 (2:1.1.3-4+b1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libbrotli-dev:amd64 (1.2.0-3) ... Setting up libgudev-1.0-0:amd64 (238-7+b2) ... Setting up libfmt10:amd64 (10.1.1+ds1-4+b2) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.22.1-1) ... Setting up perltidy (20250105-1) ... Setting up libp11-kit-dev:amd64 (0.26.2-3) ... Setting up libmp3lame0:amd64 (3.101~svn6531+dfsg-1) ... Setting up libblas-dev:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.7-1) ... Setting up libvorbisenc2:amd64 (1.3.7-3+b2) ... Setting up libpython3-stdlib:amd64 (3.13.9-3+b1) ... Setting up libclone-pp-perl (1.08-2) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libwacom-common (2.18.0-1) ... Setting up libmousex-nativetraits-perl (1.09-3) ... Setting up libbz2-dev:amd64 (1.0.8-6+b2) ... Setting up libemail-address-xs-perl (1.05-1+b5) ... Setting up libxkbcommon0:amd64 (1.13.1-1) ... Setting up libwayland-client0:amd64 (1.25.0-2) ... Setting up libnet-ssleay-perl:amd64 (1.96-1+b1) ... Setting up libpython3.13:amd64 (3.13.14-1) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2025.1-1) ... Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b2) ... Setting up gnuplot-data (6.0.3+dfsg1-1) ... Setting up libx11-xcb1:amd64 (2:1.8.13-1) ... Setting up libice6:amd64 (2:1.1.1-1+b2) ... Setting up libqt6core6t64:amd64 (6.10.2+dfsg-15) ... Setting up libhttp-date-perl (6.07-1) ... Setting up liblapack3:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.6+20251231-1+b1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up gettext (1.0-1) ... Setting up libarpack2t64:amd64 (3.9.1-6+b2) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5+b2) ... Setting up libamd3:amd64 (1:7.12.2+dfsg-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxau-dev:amd64 (1:1.0.11-1+b2) ... Setting up libxpm4:amd64 (1:3.5.19-1) ... Setting up libpcre2-dev:amd64 (10.46-1+b2) ... Setting up nettle-dev:amd64 (3.10.2-1+b1) ... Setting up libxrender1:amd64 (1:0.9.12-1+b2) ... Setting up libtool (2.5.4-11) ... Setting up libcolamd3:amd64 (1:7.12.2+dfsg-1) ... Setting up python3.13 (3.13.14-1) ... Setting up libfftw3-bin (3.3.11-1) ... Setting up libwacom9:amd64 (2.18.0-1) ... Setting up fontconfig-config (2.17.1-5) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libxmlb2:amd64 (0.3.24-2+b1) ... Setting up libpod-constants-perl (0.19-2) ... Setting up libedit2:amd64 (3.1-20260512-1) ... Setting up libpng-dev:amd64 (1.6.58-1) ... Setting up libhash-merge-perl (0.302-1) ... Setting up libsubunit-dev:amd64 (1.4.4+1-1+b1) ... Setting up libsoftware-copyright-perl (0.015-1) ... Setting up libaec-dev:amd64 (1.1.7-1) ... Setting up libavahi-common3:amd64 (0.8-18) ... Setting up libcxsparse4:amd64 (1:7.12.2+dfsg-1) ... Setting up libjpeg-dev:amd64 (1:3.1.3-4) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libnet-http-perl (6.24-1) ... Setting up libpath-iterator-rule-perl (1.015-2) ... Setting up libtext-markdown-discount-perl (0.18-1+b1) ... Setting up libperl-dev:amd64 (5.44.0~rc1-1) ... Setting up python3 (3.13.9-3+b1) ... Setting up libnss3:amd64 (2:3.124-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libpaper-utils (2.2.5-0.4) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libngtcp2-dev:amd64 (1.22.1-1) ... Setting up libreadline-dev:amd64 (8.3-4) ... Setting up libqrupdate1:amd64 (1.1.5-3+b1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-3+b1) ... Setting up libgfortran-15-dev:amd64 (15.3.0-1) ... Setting up libcamd3:amd64 (1:7.12.2+dfsg-1) ... Setting up pkgconf:amd64 (2.5.1-4) ... Setting up libpsl-dev:amd64 (0.22.0-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-2+b1) ... Setting up libinput-bin (1.31.3-1) ... Setting up libxs-parse-sublike-perl:amd64 (0.41-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (22) ... Setting up patchutils (0.4.5-1) ... Setting up libthai0:amd64 (0.1.30-1+b1) ... Setting up ca-certificates (20260601) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up libxdmcp-dev:amd64 (1:1.1.5-2+b1) ... Setting up libxml2-dev:amd64 (2.15.3+dfsg-1) ... Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1+b1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libqt6xml6:amd64 (6.10.2+dfsg-15) ... Setting up libfreetype6:amd64 (2.14.3+dfsg-1) ... Setting up libglpk40:amd64 (5.0-2+b2) ... Setting up libqt6sql6:amd64 (6.10.2+dfsg-15) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b5) ... Setting up libstring-copyright-perl (0.003014-1) ... Setting up libllvm21:amd64 (1:21.1.8-7+b3) ... Setting up libpython3.13-dev:amd64 (3.13.14-1) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b5) ... Setting up libxkbcommon-x11-0:amd64 (1.13.1-1) ... Setting up libppi-perl (1.291-1) ... Setting up liblapack-dev:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up check:amd64 (0.15.2-3+b1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0056) ... Setting up libspdlog1.15:amd64 (1:1.15.3+ds-1+b2) ... Setting up libssh2-1-dev:amd64 (1.11.1-4) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.22.1-1) ... Setting up libgvc7:amd64 (14.1.2-1+b2) ... Setting up libccolamd3:amd64 (1:7.12.2+dfsg-1) ... Setting up libngtcp2-crypto-ossl-dev:amd64 (1.22.1-1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up libwww-robotrules-perl (6.03-1) ... Setting up libsyntax-keyword-try-perl (0.31-1+b1) ... Setting up libgav1-2:amd64 (0.20.0-2+b1) ... Setting up libjack-jackd2-0:amd64 (1.9.22~dfsg-5+b2) ... Setting up libdrm2:amd64 (2.4.134-2) ... Setting up xauth (1:1.1.2-1.1) ... Setting up groff-base (1.24.1-1) ... Setting up libwayland-cursor0:amd64 (1.25.0-2) ... Setting up libhtml-parser-perl:amd64 (3.83-2+b1) ... Setting up libppix-regexp-perl (0.092-1) ... Setting up libdecor-0-0:amd64 (0.2.5-1+b1) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up libqt6core5compat6:amd64 (6.10.2-3) ... Setting up libxss1:amd64 (1:1.2.3-1+b4) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libsndfile1:amd64 (1.2.2-4+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up ca-certificates-java (20260311) ... No JRE found. Skipping Java certificates setup. Setting up libclang1-21 (1:21.1.8-7+b3) ... Setting up libsm6:amd64 (2:1.2.6-1+b2) ... Setting up libfftw3-dev:amd64 (3.3.11-1) ... Setting up libavahi-client3:amd64 (0.8-18) ... Setting up libio-socket-ssl-perl (2.098-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libqt6dbus6:amd64 (6.10.2+dfsg-15) ... Setting up libppix-quotelike-perl (0.024-1) ... Setting up libhttp-message-perl (7.02-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.134-2) ... Setting up libhtml-form-perl (6.13-1) ... Setting up dh-python (7.20260623) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libgnutls28-dev:amd64 (3.8.13-1) ... Setting up libcurl4-gnutls:amd64 (8.21.0-1) ... Setting up libinput10:amd64 (1.31.3-1) ... Setting up gfortran-15-x86-64-linux-gnu (15.3.0-1) ... Setting up libnghttp2-dev:amd64 (1.69.0-1) ... Setting up libportaudio2:amd64 (19.7.0-1+b1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libavif16:amd64 (1.4.1-1+b1) ... Setting up libparams-validationcompiler-perl (0.31-1) ... Setting up libcarp-assert-more-perl (2.9.0-1) ... Setting up libcholmod5:amd64 (1:7.12.2+dfsg-1) ... Setting up libxft2:amd64 (2.3.6-1+b5) ... Setting up libppix-utils-perl (0.003-2) ... Setting up libfeature-compat-try-perl (0.05-1) ... Setting up libpython3-dev:amd64 (3.13.9-3+b1) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b2) ... Setting up openjdk-25-doc (25.0.4~4ea-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libcurl4t64:amd64 (8.21.0-1) ... Setting up libtirpc3t64:amd64 (1.3.7+ds-1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libspqr4:amd64 (1:7.12.2+dfsg-1) ... Setting up python3.13-dev (3.13.14-1) ... Setting up po-debconf (1.0.22) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libtk8.6:amd64 (8.6.18-1) ... Setting up libxcursor1:amd64 (1:1.2.3-1+b2) ... Setting up libparams-classify-perl:amd64 (0.015-2+b6) ... Setting up openjdk-25-jre-headless:amd64 (25.0.4~4ea-1) ... update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libpango-1.0-0:amd64 (1.57.1-2) ... Setting up libdrm-intel1:amd64 (2.4.134-2) ... Setting up libcgi-pm-perl (4.72-1) ... Setting up libx11-dev:amd64 (2:1.8.13-1) ... Setting up libcurl3t64-gnutls:amd64 (8.21.0-1) ... Setting up libappstream5:amd64 (1.1.3-1) ... Setting up default-jdk-doc (2:1.25-77) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:15.2.0-5+b1) ... Setting up libxml-sax-perl (1.02+dfsg-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up libobject-pad-perl (0.825-1+b1) ... Setting up tex-common (6.20) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libclang-cpp21 (1:21.1.8-7+b3) ... Setting up libtirpc-dev:amd64 (1.3.7+ds-1) ... Setting up appstream (1.1.3-1) ... ✔ Metadata cache was updated successfully. Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up libmailtools-perl (2.22-1) ... Setting up libgssrpc4t64:amd64 (1.22.1-3) ... Setting up libconfig-model-perl (2.163-1) ... Setting up python3-dev (3.13.9-3+b1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up librtmp-dev:amd64 (2.6-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-8+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libumfpack6:amd64 (1:7.12.2+dfsg-1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libhdf5-310:amd64 (1.14.6+repack-2+b1) ... Setting up libdata-section-perl (0.200008-1) ... Setting up cmake (4.3.4-1) ... Setting up libpangoft2-1.0-0:amd64 (1.57.1-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libhdf5-fortran-310:amd64 (1.14.6+repack-2+b1) ... Setting up libcups2t64:amd64 (2.4.18-1) ... Setting up libstring-rewriteprefix-perl (0.009-1) ... Setting up gfortran-15 (15.3.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.57.1-2) ... Setting up libkadm5clnt-mit12:amd64 (1.22.1-3) ... Setting up libhdf5-cpp-310:amd64 (1.14.6+repack-2+b1) ... Setting up libconfig-model-backend-yaml-perl (2.134-2) ... Setting up libhdf5-hl-310:amd64 (1.14.6+repack-2+b1) ... Setting up mesa-libgallium:amd64 (26.1.2-1) ... Setting up libproxy1v5:amd64 (0.5.12-1+b1) ... Setting up libkdb5-10t64:amd64 (1.22.1-3) ... Setting up libgbm1:amd64 (26.1.2-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up libgl1-mesa-dri:amd64 (26.1.2-1) ... Setting up libgvplugin-pango8:amd64 (14.1.2-1+b2) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up debhelper (14.2) ... Setting up dh-exec (0.31) ... Setting up libmime-tools-perl (5.517-1) ... Setting up gfortran (4:15.2.0-5+b1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libsoftware-license-perl (0.104007-1) ... Setting up libclass-load-perl (0.25-2) ... Setting up libfeature-compat-class-perl (0.08-1) ... Setting up libspecio-perl (0.53-1) ... Setting up libegl-mesa0:amd64 (26.1.2-1) ... Setting up doxygen (1.15.0+ds1-1.1) ... Setting up r-base-core (4.6.1-1) ... Creating config file /etc/R/Renviron with new version Setting up texinfo (7.3-2) ... Setting up libqt6network6:amd64 (6.10.2+dfsg-15) ... Setting up libfltk1.4:amd64 (1.4.4-4) ... Setting up libkadm5srv-mit12:amd64 (1.22.1-3) ... Setting up libegl1:amd64 (1.7.0-3+b1) ... Setting up libmoox-aliases-perl (0.001006-3) ... Setting up libparams-validate-perl:amd64 (1.31-2+b5) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libperl-critic-perl (1.156-1) ... Setting up krb5-multidev:amd64 (1.22.1-3) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.6+repack-2+b1) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.6+repack-2+b1) ... Setting up libglx-mesa0:amd64 (26.1.2-1) ... Setting up r-base-dev (4.6.1-1) ... Setting up libglx0:amd64 (1.7.0-3+b1) ... Setting up libsoftware-licensemoreutils-perl (1.009-1) ... Setting up libkrb5-dev:amd64 (1.22.1-3) ... Setting up libgl1:amd64 (1.7.0-3+b1) ... Setting up libqt6gui6:amd64 (6.10.2+dfsg-15) ... Setting up libcurl4-openssl-dev:amd64 (8.21.0-1) ... Setting up libhdf5-dev (1.14.6+repack-2+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up libstring-license-perl (0.0.11-1) ... Setting up libgetopt-long-descriptive-perl (0.117-1) ... Setting up libglx-dev:amd64 (1.7.0-3+b1) ... Setting up libnamespace-autoclean-perl (0.31-1) ... Setting up libdatetime-locale-perl (1:1.45-1) ... Setting up libgl-dev:amd64 (1.7.0-3+b1) ... Setting up licensecheck (3.3.9-1) ... Setting up libfltk-gl1.4:amd64 (1.4.4-4) ... Setting up libapp-cmd-perl (0.340-1) ... Setting up libqt6opengl6:amd64 (6.10.2+dfsg-15) ... Setting up libdatetime-timezone-perl (1:2.68-1+2026b) ... Setting up libgl2ps1.4:amd64 (1.4.2+dfsg1-4+b1) ... Setting up libqt6widgets6:amd64 (6.10.2+dfsg-15) ... Setting up cme (1.048-1) ... Setting up libqt6openglwidgets6:amd64 (6.10.2+dfsg-15) ... Setting up libdatetime-perl (2:1.65-1+b3) ... Setting up libqt6printsupport6:amd64 (6.10.2+dfsg-15) ... Setting up libqt6help6:amd64 (6.10.2-3) ... Setting up libqscintilla2-qt6-15:amd64 (2.14.1+dfsg-3) ... Setting up libdatetime-format-rfc3339-perl (1.10.0-1) ... Setting up libdatetime-format-strptime-perl (1.8000-1) ... Setting up libdatetime-format-builder-perl (0.8300-1) ... Setting up libdatetime-format-iso8601-perl (0.19-1) ... Setting up libtoml-tiny-perl (0.22-1) ... Setting up libheif-plugin-libde265:amd64 (1.21.2-4) ... Setting up libheif-plugin-dav1d:amd64 (1.21.2-4) ... Setting up liblwp-protocol-https-perl (6.15-1) ... Setting up libwww-perl (6.83-1) ... Setting up libheif1:amd64 (1.21.2-4) ... Setting up libparse-debcontrol-perl (2.005-6) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.22-1) ... Setting up libgd3:amd64 (2.3.3-13+b2) ... Setting up gnuplot-nox (6.0.3+dfsg1-1) ... update-alternatives: using /usr/bin/gnuplot-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up libgraphicsmagick-q16-3t64 (1.4+really1.3.46-2+b1) ... Setting up libgvplugin-gd8:amd64 (14.1.2-1+b2) ... Setting up lintian (2.137.1) ... Setting up libgraphicsmagick++-q16-12t64 (1.4+really1.3.46-2+b1) ... Setting up libconfig-model-dpkg-perl (3.022) ... Setting up dh-octave-autopkgtest (1.15.0) ... Setting up octave (11.3.0-1) ... Setting up octave-dev (11.3.0-1) ... Setting up graphviz (14.1.2-1+b2) ... Setting up dh-octave (1.15.0) ... Processing triggers for libc-bin (2.42-17) ... Processing triggers for ca-certificates-java (20260311) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_BR_Root_CA_2_2023.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_2_2023.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_Server_Root_ECC_G1.pem Adding debian:OISTE_Server_Root_RSA_G1.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_RSA_TLS_Root_CA_2022_-_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:TrustAsia_TLS_ECC_Root_CA.pem Adding debian:TrustAsia_TLS_RSA_Root_CA.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:e-Szigno_TLS_Root_CA_2023.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up default-jre-headless (2:1.25-77) ... Setting up openjdk-25-jdk-headless:amd64 (25.0.4~4ea-1) ... update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jnativescan to provide /usr/bin/jnativescan (jnativescan) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jdk-headless (2:1.25-77) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for ca-certificates (20260601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20260311) ... done. +------------------------------------------------------------------------------+ | Check architectures Sat, 27 Jun 2026 19:39:26 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment Sat, 27 Jun 2026 19:39:26 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.46.50.20260617-1 dpkg-dev_1.23.7 g++-15_15.3.0-1 gcc-15_15.3.0-1 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 linux-libc-dev_7.0.13-1 Package versions: aglfn_1.7+git20191031.4036a9c-2 appstream_1.1.3-1 apt_3.3.1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-1 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.46.50.20260617-1 binutils-common_2.46.50.20260617-1 binutils-x86-64-linux-gnu_2.46.50.20260617-1 bsdextrautils_2.42.2-1 build-essential_12.12 bzip2_1.0.8-6+b2 ca-certificates_20260601 ca-certificates-java_20260311 check_0.15.2-3+b1 cmake_4.3.4-1 cme_1.048-1 comerr-dev_2.1-1.47.4-1 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.3.0-1 cpp-15-x86-64-linux-gnu_15.3.0-1 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_14.2 debian-archive-keyring_2025.1 debianutils_5.23.2 default-jdk-doc_2:1.25-77 default-jdk-headless_2:1.25-77 default-jre-headless_2:1.25-77 dh-autoreconf_22 dh-exec_0.31 dh-octave_1.15.0 dh-octave-autopkgtest_1.15.0 dh-python_7.20260623 dh-strip-nondeterminism_1.15.1-1 diffstat_1.69-1 diffutils_1:3.12-1 dirmngr_2.4.9-5 doxygen_1.15.0+ds1-1.1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.47-4 findutils_4.10.0-4 fontconfig_2.17.1-5 fontconfig-config_2.17.1-5 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acb05ff464d19280a246d245416ff71df813746549534a0d2e2e20b10faf5b97 24968 libsbml_5.20.5+dfsg-3.debian.tar.xz Files: ce53728e0d5eda7a6432cf22164047de 15814028 libsbml_5.20.5+dfsg.orig.tar.xz 507c087d27e1bb0c98a03a6ef394d097 24968 libsbml_5.20.5+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmmWLBAOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGx4w//TiGwZYD0ntx4mNiUrNkB9dKHo6Y0RIyqcw9e JsY0JovaGcUChZA0IP8NPT42P7nHSmHnjU++u8tJKqBgrz5ZzbEtkPt+aho3QpNS LBLTSXU19Yniw3uZ0eNPnZX8LsDYra3zk5LZ1EhXPw1BJmTwjqKxgbtXRw9/JcIh WYsUa/3WuPCJ7o/zLFZc2SFR53yVDHW2B5mY6morMCt6bsPOsMudgpa1eJO3+mkD OZxF+RaI8Qb6pbsgvaNSVAIexChTrlqsZNHhlQ2ePV8EvUjLpe+Za+UYDK4TkuvL md+qhQ0wx17r0KOAVoV6q2tYoHsxcLvJ8MKbBnVb7lv9rerO3RCh1Z9OxmxJjycI zDYY+PRkGSW3JUSOEKMUFdUjnr+w+YhmolEoTCPSlkHy2gu6jH8V7VC930ZCwRpG F1UUU0dde20BILo+ywkh3VGrTN2E+54PUlICBjGRwKoEUkl7S4mOkxKfVjVIhc8l 6dQWfyNXxmbU0/nTHD2OsJvmKjejcL6kXnARhvbXC+wEqqh87AaL1TMAFm8Es/at 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dpkg-source: info: applying hardening.patch dpkg-source: info: applying swig-3.x.patch dpkg-source: info: applying mips-compile-with-O1.patch dpkg-source: info: applying javadoc_java9.patch dpkg-source: info: applying javadoc.patch dpkg-source: info: applying remove_SBMLDoclet.patch dpkg-source: info: applying fix_python_interpreter.patch dpkg-source: info: applying missing_header.patch dpkg-source: info: applying doxygen_mathjax_path.patch dpkg-source: info: applying gcc-15.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 5.20.5+dfsg-3+b1 +------------------------------------------------------------------------------+ | Starting Time Build Commands Sat, 27 Jun 2026 19:39:29 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libsbml_5.20.5+dfsg-3 perl-5.44 amd64 ------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libsbml_5.20.5+dfsg-3 perl-5.44 amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg SCHROOT_ALIAS_NAME=perl-5.44-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.44-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.44-amd64-debomatic-3645fb1d-b4b3-4205-9dcd-3e04c11b6917 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mDebian Perl autobuilder -B -Zxz dpkg-buildpackage: info: source package libsbml dpkg-buildpackage: info: source version 5.20.5+dfsg-3+b1 dpkg-buildpackage: info: source distribution perl-5.44 dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/debian/source/options: --extend-diff-ignore=(^|/)(src/sbml/validator/constraints/.*|src/bindings/csharp/csharp-files.*|src/sbml/extension/SBMLExtensionRegistry.*|src/sbml/packages/comp/validator/constraints/CompIdBase.cpp|src/bindings/java/java-files/org/sbml/libsbml/SBMLExtensionRegistry.java|src/sbml/xml/XMLErrorLog.cpp|docs/src/doxygen-config-common.txt)$ debian/rules clean dh clean --builddir=build --buildsystem=cmake --without autoreconf --no-parallel dh_auto_clean -O--builddir=build -O--buildsystem=cmake -O--no-parallel debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/libsbml-rlHEno/libsbml-5.20.5+dfsg' ### the clean target of the libsbml makefile is highly b0rken ### ### the switch to cmake didn't result in great approvements ### ### still inline changes of files ### ### very ugly ### rm -rf build docs/formatted docs/src/doxygen-version-specific.txt docs/src/doxygen-config-cpp.txt \ docs/src/doxygen-config-csharp.txt docs/src/doxygen-config-perl.txt docs/src/doxygen-config-python.txt \ docs/src/java-substitutions/libsbmlConstants.java docs/src/libsbml-installation.html docs/src/perlmod/DoxyDocs.pm \ docs/src/perlmod/DoxyStructure.pm docs/src/perlmod/Makefile docs/src/perlmod/doxyrules.make \ src/bindings/matlab/runTests.log docs/src/doxygen-config-c.txt src/bindings/matlab/*.mex* docs/src/perlmod \ docs/src/doxygen_sqlite3.db docs/src/libsbml.py docs/src/common-text/libsbml-version.html find src/bindings -name "*.pyc" -delete make[1]: Leaving directory '/build/libsbml-rlHEno/libsbml-5.20.5+dfsg' dh_clean -O--builddir=build -O--buildsystem=cmake -O--no-parallel debian/rules binary-arch dh binary-arch --builddir=build --buildsystem=cmake --without autoreconf --no-parallel dh_update_autotools_config -a -O--builddir=build -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libsbml-rlHEno/libsbml-5.20.5+dfsg' dh_auto_configure -- -DENABLE_COMP:BOOL=ON -DENABLE_FBC:BOOL=ON -DENABLE_GROUPS:BOOL=ON -DENABLE_LAYOUT:BOOL=ON -DENABLE_QUAL:BOOL=ON -DENABLE_RENDER:BOOL=ON -DWITH_BZIP2:BOOL=ON -DWITH_CPP_NAMESPACE:BOOL=OFF -DWITH_EXAMPLES:BOOL=OFF -DWITH_EXPAT:BOOL=OFF -DWITH_JAVA:BOOL=ON -DWITH_LIBXML:BOOL=ON -DWITH_OCTAVE:BOOL=ON -DWITH_PERL:BOOL=ON -DWITH_PYTHON:BOOL=ON -DWITH_R:BOOL=OFF -DWITH_RUBY:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_WALL:BOOL=ON -DWITH_XERCES:BOOL=OFF -DWITH_ZLIB:BOOL=ON -DJDK_PATH:STRING=/usr/lib/jvm/default-java -DJAVA_INCLUDE_PATH:STRING=/usr/lib/jvm/default-java/include -DWITH_DOXYGEN:BOOL=ON -DWITH_CHECK:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3.13 -DWITH_CSHARP:BOOL=OFF cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_C_COMPILER=/usr/bin/x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=/usr/bin/x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DENABLE_COMP:BOOL=ON -DENABLE_FBC:BOOL=ON -DENABLE_GROUPS:BOOL=ON -DENABLE_LAYOUT:BOOL=ON -DENABLE_QUAL:BOOL=ON -DENABLE_RENDER:BOOL=ON -DWITH_BZIP2:BOOL=ON -DWITH_CPP_NAMESPACE:BOOL=OFF -DWITH_EXAMPLES:BOOL=OFF -DWITH_EXPAT:BOOL=OFF -DWITH_JAVA:BOOL=ON -DWITH_LIBXML:BOOL=ON -DWITH_OCTAVE:BOOL=ON -DWITH_PERL:BOOL=ON -DWITH_PYTHON:BOOL=ON -DWITH_R:BOOL=OFF -DWITH_RUBY:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_WALL:BOOL=ON -DWITH_XERCES:BOOL=OFF -DWITH_ZLIB:BOOL=ON -DJDK_PATH:STRING=/usr/lib/jvm/default-java -DJAVA_INCLUDE_PATH:STRING=/usr/lib/jvm/default-java/include -DWITH_DOXYGEN:BOOL=ON -DWITH_CHECK:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3.13 -DWITH_CSHARP:BOOL=OFF .. -- The C compiler identification is GNU 15.3.0 -- The CXX compiler identification is GNU 15.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "4.4.1") -- Found PkgConfig: /usr/bin/x86_64-linux-gnu-pkg-config (found version "2.5.1") CMake Warning at CMakeModules/FindZLIB.cmake:89 (message): The chosen zlib library does not appear to be valid because it is missing certain required symbols. Please check that is the correct zlib library. For details about the error, please see /CMakeFiles/CMakeError.log Call Stack (most recent call first): CMakeModules/FindLIBXML.cmake:69 (find_package) CMakeLists.txt:460 (find_package) -- Looking for sin in m -- Looking for sin in m - found -- Performing Test LIBXML_LIBXML_TEST -- Performing Test LIBXML_LIBXML_TEST - Success -- LIBXML_LIBXML_TEST = 1 -- Found LIBXML: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.15.3") -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so - found -- Found BZ2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.8") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.2") -- Performing Test CHECK_CHECK_TEST -- Performing Test CHECK_CHECK_TEST - Failed -- Performing Test CHECK_CHECK_TEST2 -- Performing Test CHECK_CHECK_TEST2 - Success -- Found CHECK: /usr/lib/x86_64-linux-gnu/libcheck.a (found version "0.2") -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Could NOT find JNI (missing: AWT) -- Found Java: /usr/bin/java (found version "25.0.4") found components: Development CMake Warning (dev) at src/bindings/java/CMakeLists.txt:37 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3.13 (found version "3.13.14") CMake Warning (dev) at src/bindings/perl/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Perl: /usr/bin/perl (found version "5.44.0") -- Found PerlLibs: /usr/lib/x86_64-linux-gnu/libperl.so.5.44 (found version "5.44.0") CMake Warning (dev) at src/bindings/octave/FindOctave.cmake:83: Syntax Warning in cmake code at column 32 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): src/bindings/octave/CMakeLists.txt:36 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/octave/FindOctave.cmake:88: Syntax Warning in cmake code at column 32 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): src/bindings/octave/CMakeLists.txt:36 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/octave/FindOctave.cmake:93: Syntax Warning in cmake code at column 32 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): src/bindings/octave/CMakeLists.txt:36 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. mkoctfile: unknown variable 'LFLAGS' CMake Warning (dev) at src/bindings/python/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/python/CMakeLists.txt:41 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.13.so (found version "3.13.14") -- Found Doxygen: /usr/bin/doxygen (found version "1.15.0") found components: doxygen dot CMake Warning (dev) at docs/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------------------------------------------------------------------- libSBML version 5.20.5 ---------------------------------------------------------------------- More information and the latest version are available online at https://sbml.org/software/libsbml/ Please report problems using the issue tracker at https://github.com/sbmlteam/libsbml/issues To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'carme' host type = Linux host operating system = Linux 7.0.10+deb14-amd64 host CPU architecture = x86_64 General build flags: CC = /usr/bin/x86_64-linux-gnu-gcc CXX = /usr/bin/x86_64-linux-gnu-g++ CPPFLAGS = -DLINUX CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC CXXFLAGS = -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,-z,now XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib/x86_64-linux-gnu/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = /usr/lib/libeatmydata -- Using SWIG = /usr/bin/swig (Version 4.4.1) -- Using Java = /usr/bin/java -- Using Python = /usr/bin/python3.13 -- Using Perl = /usr/bin/perl -- Using Octave = /usr/bin/mkoctfile -- Using libcheck = /usr/lib/x86_64-linux-gnu/libcheck.a -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'arrays' package = OFF -- SBML 'comp' package = ON -- SBML 'distrib' package = OFF -- SBML 'dyn' package = OFF -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = OFF -- SBML 'qual' package = ON -- SBML 'render' package = ON -- SBML 'req' package = OFF -- SBML 'spatial' package = OFF -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done (2.4s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE -- Build files have been written to: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build ### The following command is a hack to get around Bug#1125648. ### For some unkown reason, the value the LIBDIR installation directory ### is wrong after the invokation of cmake. It is set to: ### /<>/debian/tmp/<>/build/lib/<> ### but should actually be: ### /<>/debian/tmp/lib/<> sed -i build/CMakeCache.txt \ -e "s;^CMAKE_INSTALL_LIBDIR.*;CMAKE_INSTALL_LIBDIR:PATH=lib/$DEB_BUILD_MULTIARCH;" make[1]: Leaving directory '/build/libsbml-rlHEno/libsbml-5.20.5+dfsg' dh_auto_build -a -O--builddir=build -O--buildsystem=cmake -O--no-parallel cd build && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build' /usr/bin/cmake -S/build/libsbml-rlHEno/libsbml-5.20.5+dfsg -B/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build --check-build-system CMakeFiles/Makefile.cmake 0 Re-run cmake file: Makefile older than: CMakeCache.txt -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Warning at CMakeModules/FindZLIB.cmake:89 (message): The chosen zlib library does not appear to be valid because it is missing certain required symbols. Please check that is the correct zlib library. For details about the error, please see /CMakeFiles/CMakeError.log Call Stack (most recent call first): CMakeModules/FindLIBXML.cmake:69 (find_package) CMakeLists.txt:460 (find_package) -- LIBXML_LIBXML_TEST = 1 -- Performing Test CHECK_CHECK_TEST -- Performing Test CHECK_CHECK_TEST - Failed -- Performing Test CHECK_CHECK_TEST2 -- Performing Test CHECK_CHECK_TEST2 - Success -- Could NOT find JNI (missing: AWT) CMake Warning (dev) at src/bindings/java/CMakeLists.txt:37 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/perl/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/octave/FindOctave.cmake:83: Syntax Warning in cmake code at column 32 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): src/bindings/octave/CMakeLists.txt:36 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/octave/FindOctave.cmake:88: Syntax Warning in cmake code at column 32 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): src/bindings/octave/CMakeLists.txt:36 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/octave/FindOctave.cmake:93: Syntax Warning in cmake code at column 32 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): src/bindings/octave/CMakeLists.txt:36 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. mkoctfile: unknown variable 'LFLAGS' CMake Warning (dev) at src/bindings/python/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/python/CMakeLists.txt:41 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at docs/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------------------------------------------------------------------- libSBML version 5.20.5 ---------------------------------------------------------------------- More information and the latest version are available online at https://sbml.org/software/libsbml/ Please report problems using the issue tracker at https://github.com/sbmlteam/libsbml/issues To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'carme' host type = Linux host operating system = Linux 7.0.10+deb14-amd64 host CPU architecture = x86_64 General build flags: CC = /usr/bin/x86_64-linux-gnu-gcc CXX = /usr/bin/x86_64-linux-gnu-g++ CPPFLAGS = -DLINUX CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC CXXFLAGS = -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,-z,now XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib/x86_64-linux-gnu/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = /usr/lib/libeatmydata -- Using SWIG = /usr/bin/swig (Version 4.4.1) -- Using Java = /usr/bin/java -- Using Python = /usr/bin/python3.13 -- Using Perl = /usr/bin/perl -- Using Octave = /usr/bin/mkoctfile -- Using libcheck = /usr/lib/x86_64-linux-gnu/libcheck.a -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'arrays' package = OFF -- SBML 'comp' package = ON -- SBML 'distrib' package = OFF -- SBML 'dyn' package = OFF -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = OFF -- SBML 'qual' package = ON -- SBML 'render' package = ON -- SBML 'req' package = OFF -- SBML 'spatial' package = OFF -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done (0.8s) -- Generating done (0.3s) -- Build files have been written to: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build /usr/bin/cmake -E cmake_progress_start /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/CMakeFiles /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build' make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make[3]: Entering directory '/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build' cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libsbml-rlHEno/libsbml-5.20.5+dfsg /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/CMakeFiles/sbml.dir/DependInfo.cmake "--color=" sbml make[3]: Leaving directory '/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build' make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[3]: Entering directory '/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtensionRegister.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.cpp:36: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:67: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:77: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Submodel* CompModelPlugin::createSubmodel()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.cpp:314:3: note: in expansion of macro ‘COMP_CREATE_NS’ 314 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Port* CompModelPlugin::createPort()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.cpp:451:3: note: in expansion of macro ‘COMP_CREATE_NS’ 451 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:72: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ModelDefinition.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:84: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:401:3: note: in expansion of macro ‘COMP_CREATE_NS’ 401 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:538:3: note: in expansion of macro ‘COMP_CREATE_NS’ 538 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:72: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro ‘COMP_CREATE_NS’ 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedElement* CompSBasePlugin::createReplacedElement()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:374:3: note: in expansion of macro ‘COMP_CREATE_NS’ 374 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedBy* CompSBasePlugin::createReplacedBy()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:444:3: note: in expansion of macro ‘COMP_CREATE_NS’ 444 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::createListOfReplacedElements()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:551:5: note: in expansion of macro ‘COMP_CREATE_NS’ 551 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:52, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Deletion.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Deletion.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Deletion.h:104, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Deletion.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Deletion.cpp:47: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ModelDefinition.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:84, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:47: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfDeletions.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Deletion.h:104, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfDeletions.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual SBase* ListOfDeletions::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro ‘COMP_CREATE_NS’ 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:122, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function ‘virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ModelDefinition.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfModelDefinitions.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function ‘virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfPorts.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Port.h:85, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfPorts.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfPorts.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual SBase* ListOfPorts::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function ‘virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro ‘COMP_CREATE_NS’ 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:118, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ModelDefinition.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ModelDefinition.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ModelDefinition.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ModelDefinition.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ModelDefinition.cpp:48: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Port.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Port.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Port.h:85, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Port.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:62: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:65: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.cpp:48: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.cpp:47: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:77, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:306: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.cpp:47: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.cpp:48: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘SBaseRef* SBaseRef::createSBaseRef()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.cpp:553:5: note: in expansion of macro ‘COMP_CREATE_NS’ 553 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual SBase* SBaseRef::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.cpp:672:7: note: in expansion of macro ‘COMP_CREATE_NS’ 672 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.cpp:683:7: note: in expansion of macro ‘COMP_CREATE_NS’ 683 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/L3Parser.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Rule.h:147, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/RateRule.h:154, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.cpp:40: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ModelDefinition.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:84, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.cpp:49: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.cpp:50: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.cpp:48: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.cpp: In member function ‘Deletion* Submodel::createDeletion()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.cpp:498:3: note: in expansion of macro ‘COMP_CREATE_NS’ 498 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/CompFlatteningConverter.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/CompFlatteningConverter.h:492, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/CompFlatteningConverter.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:67: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:77: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/CompFlatteningConverter.cpp:49: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/SBMLFileResolver.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/SBMLFileResolver.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/SBMLResolver.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/SBMLResolver.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/SBMLUri.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util/SBMLUri.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:39, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:58: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:39, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:58: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueModelIds.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:39, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:58: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/CompValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/CompValidator.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:58: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/CompValidator.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/FunctionDefinition.h:140, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:454: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/ClassReplacements.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:58: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/FunctionDefinition.h:140, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:454: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:77, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function ‘void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro ‘COMP_CREATE_NS’ 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/FunctionDefinition.h:140, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:454: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/FunctionDefinition.h:140, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:454: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:77, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function ‘void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro ‘COMP_CREATE_NS’ 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/FunctionDefinition.h:140, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:454: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/FunctionDefinition.h:140, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:454: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueModelIds.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/FunctionDefinition.h:140, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:454: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniquePortIds.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/FunctionDefinition.h:140, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:454: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniquePortReferences.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/FunctionDefinition.h:140, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:454: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/FunctionDefinition.h:140, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:454: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBase.h:3629:16: warning: ‘virtual void SBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ was hidden [-Woverloaded-virtual=] 3629 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:117, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Replacing.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ReplacedElement.h:137, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfReplacedElements.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:42, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/CompIdBase.h:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: note: by ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:86, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:497:16: note: by ‘virtual void ExternalModelDefinition::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 497 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/CompBase.h:155:16: warning: ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&, bool, bool, CompSBMLErrorCode_t)’ was hidden [-Woverloaded-virtual=] 155 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/ListOfSubmodels.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common/CompExtensionTypes.h:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml/Submodel.h:876:16: note: by ‘virtual void Submodel::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’ 876 | virtual void readAttributes (const XMLAttributes& attributes, | ^~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtensionRegister.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.h:146, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘FluxBound* FbcModelPlugin::createFluxBound()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:683:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 683 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘Objective* FbcModelPlugin::createObjective()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:944:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 944 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneProduct* FbcModelPlugin::createGeneProduct()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1120:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1120 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneAssociation* FbcModelPlugin::createGeneAssociation()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1323:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1323 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘UserDefinedConstraint* FbcModelPlugin::createUserDefinedConstraint()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1558:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1558 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createChildObject(const std::string&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2029:10: warning: unused variable ‘obj’ [-Wunused-variable] 2029 | SBase* obj = NULL; | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual unsigned int FbcModelPlugin::getNumObjects(const std::string&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2132:16: warning: unused variable ‘n’ [-Wunused-variable] 2132 | unsigned int n = 0; | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::getObject(const std::string&, unsigned int)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2166:10: warning: unused variable ‘obj’ [-Wunused-variable] 2166 | SBase* obj = NULL; | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2388:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 2388 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:70, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:447:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 447 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createChildObject(const std::string&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:896:10: warning: unused variable ‘obj’ [-Wunused-variable] 896 | SBase* obj = NULL; | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual unsigned int FbcReactionPlugin::getNumObjects(const std::string&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:918:16: warning: unused variable ‘n’ [-Wunused-variable] 918 | unsigned int n = 0; | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::getObject(const std::string&, unsigned int)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:944:10: warning: unused variable ‘obj’ [-Wunused-variable] 944 | SBase* obj = NULL; | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:35: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:70, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSBasePlugin.h:52, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp: In member function ‘KeyValuePair* FbcSBasePlugin::createKeyValuePair()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:229:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 229 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:90, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Association.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Association.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Association.cpp:48: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAnd.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAnd.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcAnd* FbcAnd::createAnd()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAnd.cpp:301:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 301 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcOr* FbcAnd::createOr()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAnd.cpp:338:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 338 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘GeneProductRef* FbcAnd::createGeneProductRef()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAnd.cpp:375:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 375 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:110, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcAnd* ListOfFbcAssociations::createAnd()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:953:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 953 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcOr* ListOfFbcAssociations::createOr()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:990:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 990 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘GeneProductRef* ListOfFbcAssociations::createGeneProductRef()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1027:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1027 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1123:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1123 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1131:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1131 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1139:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1139 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1147:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1147 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcOr.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcOr.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcAnd* FbcOr::createAnd()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcOr.cpp:313:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 313 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcOr* FbcOr::createOr()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcOr.cpp:350:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 350 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘GeneProductRef* FbcOr::createGeneProductRef()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FbcOr.cpp:387:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 387 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxBound.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:131, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function ‘virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxBound.cpp:1189:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1189 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:98, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘FluxObjective* ListOfFluxObjectives::createFluxObjective()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1385:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1385 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1481:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1481 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneAssociation.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneAssociation.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘Association* GeneAssociation::createAssociation()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:700:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 700 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:94, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘GeneProduct* ListOfGeneProducts::createGeneProduct()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1112:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1112 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1208:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1208 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcAnd* GeneProductAssociation::createAnd()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:218:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 218 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcOr* GeneProductAssociation::createOr()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:233:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:248:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 248 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:994:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.h:146, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/KeyValuePair.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/KeyValuePair.h:58, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/KeyValuePair.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/KeyValuePair.cpp: In member function ‘virtual void KeyValuePair::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/KeyValuePair.cpp:879:8: warning: unused variable ‘assigned’ [-Wunused-variable] 879 | bool assigned = false; | ^~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.h:58, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘KeyValuePair* ListOfKeyValuePairs::createKeyValuePair()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:320:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 320 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual SBase* ListOfKeyValuePairs::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:404:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 404 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual void ListOfKeyValuePairs::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:449:8: warning: unused variable ‘assigned’ [-Wunused-variable] 449 | bool assigned = false; | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘void ListOfKeyValuePairs::readL3V1V3Attributes(const XMLAttributes&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:499:16: warning: unused variable ‘pkgVersion’ [-Wunused-variable] 499 | unsigned int pkgVersion = getPackageVersion(); | ^~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:500:17: warning: unused variable ‘log’ [-Wunused-variable] 500 | SBMLErrorLog* log = getErrorLog(); | ^~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.h:59, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘UserDefinedConstraintComponent* ListOfUserDefinedConstraintComponents::createUserDefinedConstraintComponent()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:270:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 270 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraintComponents::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:380:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 380 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.h:58, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘UserDefinedConstraint* ListOfUserDefinedConstraints::createUserDefinedConstraint()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:260:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 260 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraints::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:405:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 405 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Objective.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Objective.h:139, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Objective.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘FluxObjective* Objective::createFluxObjective()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Objective.cpp:473:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 473 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘Objective* ListOfObjectives::createObjective()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Objective.cpp:1435:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1435 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘virtual SBase* ListOfObjectives::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/Objective.cpp:1554:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1554 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:58, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp: In member function ‘UserDefinedConstraintComponent* UserDefinedConstraint::createUserDefinedConstraintComponent()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:544:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 544 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp: In member function ‘virtual void UserDefinedConstraint::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:1353:8: warning: unused variable ‘assigned’ [-Wunused-variable] 1353 | bool assigned = false; | ^~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:84, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp: In member function ‘virtual void UserDefinedConstraintComponent::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp:1109:8: warning: unused variable ‘assigned’ [-Wunused-variable] 1109 | bool assigned = false; | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp: In member function ‘void UserDefinedConstraintComponent::readL3V1V3Attributes(const XMLAttributes&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp:1195:16: warning: variable ‘numErrs’ set but not used [-Wunused-but-set-variable] 1195 | unsigned int numErrs; | ^~~~~~~ [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/conversion/SBMLConverter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/CobraToFbcConverter.h:61, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/conversion/SBMLConverter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/FbcToCobraConverter.h:61, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/conversion/SBMLConverter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/FbcV1ToV2Converter.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp:36: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/conversion/SBMLConverter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/FbcV2ToV1Converter.h:58, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp:36: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:39, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:39, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/FbcValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/FbcValidator.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtensionRegister.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:70, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function ‘Group* GroupsModelPlugin::createGroup()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:234:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 234 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.h:62, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/Group.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/Group.h:169, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/Group.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/Group.cpp: In member function ‘Member* Group::createMember()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/Group.cpp:450:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 450 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfGroups.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfGroups.h:77, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘Group* ListOfGroups::createGroup()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfGroups.cpp:248:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 248 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘virtual SBase* ListOfGroups::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfGroups.cpp:308:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 308 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfMembers.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfMembers.h:105, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘Member* ListOfMembers::createMember()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfMembers.cpp:348:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 348 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘virtual SBase* ListOfMembers::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/ListOfMembers.cpp:459:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 459 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/Member.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/Member.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml/Member.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints/GroupsConsistencyConstraints.cpp:47, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp:53: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints/GroupsIdentifierConsistencyConstraints.cpp:47, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp:53: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/GroupsValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/GroupsValidator.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.h:55, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.h:50, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtensionRegister.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp:47, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp:53: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp:47, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp:53: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp:47: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp:47: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtensionRegister.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.cpp:50: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function ‘Layout* LayoutModelPlugin::createLayout()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:481:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 481 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:53, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:59: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CubicBezier.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CubicBezier.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CubicBezier.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘LineSegment* Curve::createLineSegment()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.cpp:362:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 362 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘CubicBezier* Curve::createCubicBezier()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.cpp:377:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 377 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.cpp:645:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 645 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Dimensions.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Dimensions.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Dimensions.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:65: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘ReferenceGlyph* GeneralGlyph::createReferenceGlyph()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:648:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 648 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1175:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1175 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.cpp:50: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Dimensions.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘CompartmentGlyph* Layout::createCompartmentGlyph()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:1367:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1367 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘SpeciesGlyph* Layout::createSpeciesGlyph()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:1383:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1383 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘ReactionGlyph* Layout::createReactionGlyph()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:1399:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1399 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GeneralGlyph* Layout::createGeneralGlyph()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:1414:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1414 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘TextGlyph* Layout::createTextGlyph()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:1430:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1430 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GraphicalObject* Layout::createAdditionalGraphicalObject()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:1447:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1447 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfLayouts::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:2028:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2028 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:2200:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2200 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:2352:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2352 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:2501:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2501 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.cpp:2650:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2650 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:70, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:499:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 499 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:976:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 976 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp:40: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:58, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp:40: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:40: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:59, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.cpp:54: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:49: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:49: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:49: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/LayoutValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/LayoutValidator.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/LayoutValidator.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:55, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:47: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtensionRegister.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:70, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePlugin.h:73: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp:835:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 835 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘Transition* QualModelPlugin::createTransition()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1013:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1013 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:48: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:77, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘DefaultTerm* ListOfFunctionTerms::createDefaultTerm()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1068:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1068 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1125:3: note: in expansion of macro ‘QUAL_CREATE_NS’ 1125 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Input.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Input.h:107, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Input.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual SBase* ListOfInputs::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Output.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Output.h:98, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Output.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual SBase* ListOfOutputs::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.h:91, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Input* Transition::createInput()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:456:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 456 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Output* Transition::createOutput()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:636:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 636 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘FunctionTerm* Transition::createFunctionTerm()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:790:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 790 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual SBase* ListOfTransitions::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:1755:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1755 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp:52: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:52: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:46, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:52: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/QualValidator.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/QualValidator.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:55, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:45: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/UnitFormulaFormatter.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/validator/VConstraint.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:55, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTypes.h:48, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLTransforms.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/ASTBasePlugin.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/ASTNode.h:189, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/math/FormulaFormatter.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/units/FormulaUnitsData.h:93, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/Model.h:467, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtensionRegister.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.cpp:36: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.h:75, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common/RenderExtensionTypes.h:75, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function ‘LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:39: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Curve.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function ‘GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ColorDefinition.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ColorDefinition.cpp:53: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/DefaultValues.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientBase.h:102, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/DefaultValues.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/DefaultValues.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Ellipse.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Ellipse.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Ellipse.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Ellipse.cpp:65: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function ‘GlobalStyle* GlobalRenderInformation::createGlobalStyle()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:365:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 365 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GlobalStyle.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Style.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GlobalStyle.h:74, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GlobalStyle.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GlobalStyle.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientBase.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientBase.h:102, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientBase.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientBase.cpp: In member function ‘GradientStop* GradientBase::createGradientStop()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientBase.cpp:565:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 565 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientStop.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientStop.h:84, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientStop.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientStop.cpp:56: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Image.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Transformation.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Transformation2D.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Image.h:76, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Image.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Image.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.h:77, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘RenderGroup* LineEnding::createGroup()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp:540:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 540 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘BoundingBox* LineEnding::createBoundingBox()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp:566:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 566 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual SBase* LineEnding::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp:1320:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1320 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp:1322:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1322 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual void LineEnding::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp:1494:47: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 1494 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LineEnding.cpp:1398:16: note: ‘numErrs’ was declared here 1398 | unsigned int numErrs; | ^~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LinearGradient.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientBase.h:102, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LinearGradient.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LinearGradient.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LinearGradient.cpp:52: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘ColorDefinition* ListOfColorDefinitions::createColorDefinition()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:295:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 295 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:367:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.h:75: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:50: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘RenderCubicBezier* ListOfCurveElements::createCubicBezier()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:324:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 324 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:413:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 413 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.h:75, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Image* ListOfDrawables::createImage()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp:261:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 261 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Ellipse* ListOfDrawables::createEllipse()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp:289:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 289 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Rectangle* ListOfDrawables::createRectangle()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp:317:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 317 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Polygon* ListOfDrawables::createPolygon()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp:345:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 345 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderGroup* ListOfDrawables::createGroup()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp:373:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘LineEnding* ListOfDrawables::createLineEnding()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp:401:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 401 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Text* ListOfDrawables::createText()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp:429:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderCurve* ListOfDrawables::createCurve()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp:457:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 457 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘virtual SBase* ListOfDrawables::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfDrawables.cpp:517:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 517 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:605:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 605 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:842:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 842 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual void ListOfGlobalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:940:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 940 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:898:16: note: ‘numErrs’ was declared here 898 | unsigned int numErrs; | ^~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘GlobalStyle* ListOfGlobalStyles::createGlobalStyle()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:283:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 283 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:348:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 348 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘LinearGradient* ListOfGradientDefinitions::createLinearGradient()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:306:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 306 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘RadialGradient* ListOfGradientDefinitions::createRadialGradient()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:335:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 335 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:395:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 395 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientStops.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientStops.h:84, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:48: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘GradientStop* ListOfGradientStops::createGradientStop()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:304:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 304 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:364:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 364 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLineEndings.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLineEndings.h:72, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘LineEnding* ListOfLineEndings::createLineEnding()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:295:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 295 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:369:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘DefaultValues* ListOfLocalRenderInformation::createDefaultValues()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:586:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 586 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:792:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 792 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual void ListOfLocalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:890:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 890 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:848:16: note: ‘numErrs’ was declared here 848 | unsigned int numErrs; | ^~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘LocalStyle* ListOfLocalStyles::createLocalStyle()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:364:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 364 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalRenderInformation.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:56: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createLocalStyle()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:339:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createStyle(const std::string&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:363:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalStyle.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Style.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalStyle.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalStyle.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalStyle.cpp:46: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/LocalStyle.cpp:59: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.h:75: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.cpp: In constructor ‘Polygon::Polygon(const XMLNode&, unsigned int)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderPoint* Polygon::createPoint()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.cpp:421:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 421 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderCubicBezier* Polygon::createCubicBezier()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.cpp:449:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 449 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RadialGradient.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GradientBase.h:102, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RadialGradient.h:80, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RadialGradient.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RadialGradient.cpp:52: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Rectangle.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Rectangle.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Rectangle.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Rectangle.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RelAbsVector.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RelAbsVector.h:73, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RelAbsVector.cpp:44: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCubicBezier.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Point.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCubicBezier.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCubicBezier.cpp:52: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCurve.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Dimensions.h:65, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:67, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderPoint* RenderCurve::createPoint()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCurve.cpp:473:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 473 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderCubicBezier* RenderCurve::createCubicBezier()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCurve.cpp:501:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 501 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/groups/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/l3v2extendedmath/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/qual/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/libsbml-rlHEno/libsbml-5.20.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:112, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLDocument.h:305, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBasePluginCreatorBase.h:57, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:143, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:60, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.h:76, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:211:16: warning: ‘virtual void XMLErrorLog::add(const std::vector&)’ was hidden [-Woverloaded-virtual=] 211 | virtual void add (const std::vector& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/xml/XMLErrorLog.h:200:16: warning: ‘virtual void XMLErrorLog::add(const std::__cxx11::list&)’ was hidden [-Woverloaded-virtual=] 200 | virtual void add (const std::list& errors); | ^~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/SBMLErrorLog.h:298:8: note: by ‘void SBMLErrorLog::add(const SBMLError&)’ 298 | void add (const SBMLError& error); | ^~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/Polygon.h:75, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:56: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:68, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:65: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:69: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:70: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/Layout.h:71: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Image* RenderGroup::createImage()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:1110:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1110 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Ellipse* RenderGroup::createEllipse()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:1138:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1138 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Rectangle* RenderGroup::createRectangle()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:1166:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1166 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Polygon* RenderGroup::createPolygon()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:1194:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1194 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderGroup* RenderGroup::createGroup()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:1222:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1222 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘LineEnding* RenderGroup::createLineEnding()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:1250:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1250 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Text* RenderGroup::createText()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:1278:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1278 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderCurve* RenderGroup::createCurve()’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:1306:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1306 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘void RenderGroup::importOldCurve(const XMLNode&)’: /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/render/sbml/RenderGroup.cpp:2623:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 2623 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src && /usr/bin/x86_64-linux-gnu-g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/build/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/comp/validator/constraints -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/common -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/extension -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/sbml -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/util -I/build/libsbml-rlHEno/libsbml-5.20.5+dfsg/src/sbml/packages/fbc/validator 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