sbuild (Debian sbuild) 0.91.10 (27 June 2026) on carme.larted.org.uk +==============================================================================+ | vcftools 0.1.17-1 (amd64) Sat, 11 Jul 2026 21:35:41 +0000 | +==============================================================================+ Package: vcftools Version: 0.1.17-1 Source Version: 0.1.17-1 Distribution: perl-5.44-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sat, 11 Jul 2026 21:35:41 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup vcftools_0.1.17-1 perl-5.44-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup vcftools_0.1.17-1 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sat, 11 Jul 2026 21:35:42 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Get:2 http://deb.debian.org/debian unstable InRelease [193 kB] Get:3 http://deb.debian.org/debian sid InRelease [193 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-07-11-2000.26-F-2026-07-11-2000.26.pdiff [28.0 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-07-11-2000.26-F-2026-07-11-2000.26.pdiff [28.0 kB] Get:7 http://deb.debian.org/debian sid/main Sources T-2026-07-11-2000.26-F-2026-07-11-2000.26.pdiff [14.0 kB] Get:7 http://deb.debian.org/debian sid/main Sources T-2026-07-11-2000.26-F-2026-07-11-2000.26.pdiff [14.0 kB] Fetched 555 kB in 6s (86.5 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dirmngr gnupg gnupg-l10n gpg gpg-agent gpgconf gpgsm libp11-kit0 pinentry-curses 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3413 kB of archives. After this operation, 28.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian unstable/main amd64 dirmngr amd64 2.4.9-7 [382 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 gpg-agent amd64 2.4.9-7 [270 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 gpg amd64 2.4.9-7 [636 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 gpgconf amd64 2.4.9-7 [126 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 gnupg all 2.4.9-7 [415 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gpgsm amd64 2.4.9-7 [274 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 pinentry-curses amd64 1.3.3-2 [91.2 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 gnupg-l10n all 2.4.9-7 [748 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.26.4-1 [471 kB] Fetched 3413 kB in 0s (117 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15696 files and directories currently installed.) Preparing to unpack .../0-dirmngr_2.4.9-7_amd64.deb ... Unpacking dirmngr (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../1-gpg-agent_2.4.9-7_amd64.deb ... Unpacking gpg-agent (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../2-gpg_2.4.9-7_amd64.deb ... Unpacking gpg (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../3-gpgconf_2.4.9-7_amd64.deb ... Unpacking gpgconf (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../4-gnupg_2.4.9-7_all.deb ... Unpacking gnupg (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../5-gpgsm_2.4.9-7_amd64.deb ... Unpacking gpgsm (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../6-pinentry-curses_1.3.3-2_amd64.deb ... Unpacking pinentry-curses (1.3.3-2) over (1.3.2-4) ... Preparing to unpack .../7-gnupg-l10n_2.4.9-7_all.deb ... Unpacking gnupg-l10n (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../8-libp11-kit0_0.26.4-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.26.4-1) over (0.26.2-3) ... Setting up pinentry-curses (1.3.3-2) ... Setting up gnupg-l10n (2.4.9-7) ... Setting up libp11-kit0:amd64 (0.26.4-1) ... Setting up gpgconf (2.4.9-7) ... Setting up gpg (2.4.9-7) ... Setting up gpg-agent (2.4.9-7) ... Setting up gpgsm (2.4.9-7) ... Setting up dirmngr (2.4.9-7) ... Setting up gnupg (2.4.9-7) ... Processing triggers for libc-bin (2.42-17) ... +------------------------------------------------------------------------------+ | Fetch source files Sat, 11 Jul 2026 21:35:52 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/vcftools_0.1.17-1.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 11 Jul 2026 21:35:53 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkgconf, zlib1g-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), pkgconf, zlib1g-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/vcftools-81MqD7/resolver-ua6M4P/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/vcftools-81MqD7/resolver-ua6M4P/apt_archive ./ InRelease Get:2 copy:/build/vcftools-81MqD7/resolver-ua6M4P/apt_archive ./ Release [609 B] Ign:3 copy:/build/vcftools-81MqD7/resolver-ua6M4P/apt_archive ./ Release.gpg Get:4 copy:/build/vcftools-81MqD7/resolver-ua6M4P/apt_archive ./ Sources [621 B] Get:5 copy:/build/vcftools-81MqD7/resolver-ua6M4P/apt_archive ./ Packages [660 B] Fetched 1890 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libpkgconf7 libtool libuchardet0 libxml2-16 m4 man-db pkgconf pkgconf-bin po-debconf sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libpkgconf7 libtool libuchardet0 libxml2-16 m4 man-db pkgconf pkgconf-bin po-debconf sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 12.9 MB of archives. After this operation, 56.0 MB of additional disk space will be used. Get:1 copy:/build/vcftools-81MqD7/resolver-ua6M4P/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [872 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-3 [332 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.2-1 [100.0 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-3 [820 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-3 [2658 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.3 [934 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Preconfiguring packages ... Fetched 12.9 MB in 0s (123 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 15696 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-3_amd64.deb ... Unpacking gettext-base (1.0-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.24.1-1_amd64.deb ... Unpacking groff-base (1.24.1-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.42.2-1_amd64.deb ... Unpacking bsdextrautils (2.42.2-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-3) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.73-2_all.deb ... Unpacking autoconf (2.73-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1+nmu1_all.deb ... Unpacking autotools-dev (20240727.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-4_all.deb ... Unpacking automake (1:1.18.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_1.0-3_all.deb ... Unpacking autopoint (1.0-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_14.3_all.deb ... Unpacking libdebhelper-perl (14.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-11_all.deb ... Unpacking libtool (2.5.4-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_22_all.deb ... Unpacking dh-autoreconf (22) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.195-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.195-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-4_amd64.deb ... Unpacking dwz (0.16-4) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../23-libxml2-16_2.15.3+dfsg-1_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.3+dfsg-1) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_1.0-3_amd64.deb ... Unpacking gettext (1.0-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.22_all.deb ... Unpacking po-debconf (1.0.22) ... Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_14.3_all.deb ... Unpacking debhelper (14.3) ... Selecting previously unselected package libpkgconf7:amd64. Preparing to unpack .../28-libpkgconf7_2.5.1-4_amd64.deb ... Unpacking libpkgconf7:amd64 (2.5.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../29-pkgconf-bin_2.5.1-4_amd64.deb ... Unpacking pkgconf-bin (2.5.1-4) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../30-pkgconf_2.5.1-4_amd64.deb ... Unpacking pkgconf:amd64 (2.5.1-4) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../31-zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../32-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up bsdextrautils (2.42.2-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.3+dfsg-1) ... Setting up libdebhelper-perl (14.3) ... Setting up libpkgconf7:amd64 (2.5.1-4) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-3) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.47-4) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up autopoint (1.0-3) ... Setting up pkgconf-bin (2.5.1-4) ... Setting up autoconf (2.73-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Setting up dwz (0.16-4) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-3) ... Setting up libtool (2.5.4-11) ... Setting up pkgconf:amd64 (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (22) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' → '/usr/lib/systemd/system/man-db.timer'. Setting up debhelper (14.3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-17) ... +------------------------------------------------------------------------------+ | Check architectures Sat, 11 Jul 2026 21:35:57 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Sat, 11 Jul 2026 21:35:57 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.46.50.20260617-1 dpkg-dev_1.23.7 g++-15_15.3.0-1 gcc-15_15.3.0-1 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 linux-libc-dev_7.1.3-1 Package versions: apt_3.3.1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.46.50.20260617-1 binutils-common_2.46.50.20260617-1 binutils-x86-64-linux-gnu_2.46.50.20260617-1 bsdextrautils_2.42.2-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.3.0-1 cpp-15-x86-64-linux-gnu_15.3.0-1 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-7 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.47-4 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.3.0-1 g++-15-x86-64-linux-gnu_15.3.0-1 g++-x86-64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.3.0-1 gcc-15-base_15.3.0-1 gcc-15-x86-64-linux-gnu_15.3.0-1 gcc-16-base_16.1.0-2 gcc-x86-64-linux-gnu_4:15.2.0-5+b1 gettext_1.0-3 gettext-base_1.0-3 gnupg_2.4.9-7 gnupg-l10n_2.4.9-7 gpg_2.4.9-7 gpg-agent_2.4.9-7 gpgconf_2.4.9-7 gpgsm_2.4.9-7 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.1 libarchive-zip-perl_1.68-1 libasan8_16.1.0-2 libassuan9_3.0.2-2+b2 libatomic1_16.1.0-2 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46.50.20260617-1 libblkid1_2.42.2-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-17 libc-dev-bin_2.42-17 libc-gconv-modules-extra_2.42-17 libc6_2.42-17 libc6-dev_2.42-17 libcap-ng0_0.9.3-1+b1 libcc1-0_16.1.0-2 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46.50.20260617-1 libctf0_2.46.50.20260617-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdpkg-perl_1.23.7 libeatmydata1_131-2+b2 libelf1t64_0.195-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-15-dev_15.3.0-1 libgcc-s1_16.1.0-2 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.1.0-2 libgpg-error0_1.61-3 libgprofng0_2.46.50.20260617-1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.1.0-2 libidn2-0_2.3.8-5 libisl23_0.27-2 libitm1_16.1.0-2 libjansson4_2.15.1-1 libksba8_1.8.0-3 libldap2_2.6.13+dfsg-1+b1 liblsan0_16.1.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.4-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-8 libperl5.44_5.44.0~rc2-1 libpipeline1_1.5.8-3 libpkgconf7_2.5.1-4 libquadmath0_16.1.0-2 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.1-1 libselinux1_3.11-2 libsframe3_2.46.50.20260617-1 libsmartcols1_2.42.2-1 libsqlite3-0_3.53.3-1 libssl3t64_3.6.3-1 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 libsystemd-shared_261.1-2 libsystemd0_261.1-2 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.5.4-11 libtsan2_16.1.0-2 libtss2-esys-3.0.2-0t64_4.1.3-6 libtss2-mu-4.0.1-0t64_4.1.3-6 libtss2-rc0t64_4.1.3-6 libtss2-sys1t64_4.1.3-6 libtss2-tcti-cmd0t64_4.1.3-6 libtss2-tcti-device0t64_4.1.3-6 libtss2-tcti-mssim0t64_4.1.3-6 libtss2-tcti-swtpm0t64_4.1.3-6 libubsan1_16.1.0-2 libuchardet0_0.0.8-2+b2 libudev1_261.1-2 libunistring5_1.4.2-1 libuuid1_2.42.2-1 libxml2-16_2.15.3+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.1.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 mount_2.42.2-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.3-1 patch_2.8-2 perl_5.44.0~rc2-1 perl-base_5.44.0~rc2-1 perl-modules-5.40_5.40.1-8 perl-modules-5.44_5.44.0~rc2-1 pinentry-curses_1.3.3-2 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.4.0-1 systemd_261.1-2 systemd-tpm_261.1-2 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 tpm-udev_4.1.3-6 util-linux_2.42.2-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sat, 11 Jul 2026 21:35:57 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vcftools Binary: vcftools Architecture: any Version: 0.1.17-1 Maintainer: Debian Med Packaging Team Uploaders: Thorsten Alteholz , Andreas Tille Homepage: https://vcftools.github.io/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/vcftools Vcs-Git: https://salsa.debian.org/med-team/vcftools.git Testsuite: autopkgtest Testsuite-Triggers: libtest-most-perl, tabix Build-Depends: debhelper-compat (= 13), pkgconf, zlib1g-dev Package-List: vcftools deb science optional arch=any Checksums-Sha1: 72059d447fd02bb6f6f475e096097774deebbb88 247685 vcftools_0.1.17.orig.tar.gz 4bc6a321027451c34ccc24b234bd0d8f240aa76e 13976 vcftools_0.1.17-1.debian.tar.xz Checksums-Sha256: 00b54fc7349179c2efbdab0e4dcb65a69e7b0ab0d0d29b59cc823140d0b40bff 247685 vcftools_0.1.17.orig.tar.gz fee2757af403c952c89a607bf703f5bf63362cf9e6d941447c8acfbd624d6195 13976 vcftools_0.1.17-1.debian.tar.xz Files: 1585c9f9f25b47dca70a0e611a249cb6 247685 vcftools_0.1.17.orig.tar.gz 938ee270ea9acc60822efcd21650b81c 13976 vcftools_0.1.17-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEmjwHvQbeL0FugTpdYS7xYT4FD1QFAmioDBAACgkQYS7xYT4F D1Q73Q//Zm8qjx82MxGPS8IJ6omIyIZJo4FwgJeQxQvwZW1q04Icr1JVtN0l9Zcc PrOa+aop9dUK9PnwxV2wmPLSRM/MijAi4dLL0UuY512xULhPGzhbgTw4kn+vTkn+ EckS/FVWakelHpw31yvubNg0VKdoN6FaiD9H8gEpIgTadE+gPRZRQ0OyJUNdRnlT ZokNAC8XSfycx418UwVyMdw3y34wnNdvAhqLsZ4oZwFEXKL4i8oY3ZZMxitVdZ73 MtoRUYxiYWxoaeM3TKPF/yMR/Ub2Scxgm1eKwzgj/kvx5n2iJ46cTnxlp/05wx8R aewmsBtm+plcQVFOCJ4Wg17CtdiCjNmzMKZPf5eUDffLbHSYjjQEFmXh6VtliOzo 2fL8s5JPye/0/ybmJbVxmacqL4DAG/bth7trWHvp/HL0OwCX67UL3ryPN0k6bXf9 ku0xXoIVR86iRhqDwEiXqbv16JQVEuPkEOYGtd5RDQWrOIjzgyQwiUGh3iz8fINO GwxyKjqOi1XZcVQgAOIXvAqUfi7dB3h3SAaMq/m5C6sD3gTRheoKu/HWd7UG2WhV twN4kxT3IxoeD+2ZgUwNqmrkPz5ZeNAMbOvi1bOSz2rJKlNMD7BeM6eP3ESxlBdS 2JpN58Q1iHT3O0BJV7oWmEWYp7kx2DIah6nd8sh7yB6wzDXM/yA= =Xkn7 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./vcftools_0.1.17-1.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./vcftools_0.1.17-1.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting vcftools in /build/vcftools-81MqD7/vcftools-0.1.17 dpkg-source: info: unpacking vcftools_0.1.17.orig.tar.gz dpkg-source: info: unpacking vcftools_0.1.17-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying temporary_test_fix.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying manpage.patch dpkg-source: info: applying 0001-vcf-fix-ploidy-make-p-work-without-.-on-INC.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Sat, 11 Jul 2026 21:35:58 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network vcftools_0.1.17-1 perl-5.44-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network vcftools_0.1.17-1 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/vcftools-81MqD7/vcftools-0.1.17 SCHROOT_ALIAS_NAME=perl-5.44-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.44-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.44-amd64-debomatic-b6bf2d69-6ec3-4053-b411-03f1539d2dea SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package vcftools dpkg-buildpackage: info: source version 0.1.17-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/vcftools.substvars debian/files rm -fr -- debian/vcftools/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building vcftools using existing ../vcftools_0.1.17.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building vcftools in ../vcftools_0.1.17-1.debian.tar.xz dpkg-source: info: building vcftools in ../vcftools_0.1.17-1.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i -v autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: no obvious need to run autopoint autoreconf: running: aclocal --force autoreconf: configure.ac: tracing autoreconf: configure.ac: not using Libtool autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: configure.ac: no need to run autopoint (confirmed) autoreconf: running: /usr/bin/autoconf --force autoreconf: running: /usr/bin/autoheader --force autoreconf: running: automake --add-missing --copy --force-missing configure.ac:16: installing './compile' configure.ac:12: installing './install-sh' configure.ac:12: installing './missing' src/cpp/Makefile.am: installing './depcomp' autoreconf: configure.ac: not running make: --make not given autoreconf: Leaving directory '.' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' dh_auto_configure -- --with-pmdir=/share/perl5 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-pmdir=/share/perl5 checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1002' is supported by ustar format... yes checking whether GID '110' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-linux-gnu-g++... none checking for gcc... x86_64-linux-gnu-gcc checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C23 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of x86_64-linux-gnu-gcc... none checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E checking for perl... /usr/bin/perl checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for arpa/inet.h... yes checking for fcntl.h... yes checking for limits.h... yes checking for netdb.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/socket.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for int8_t... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking for x86_64-linux-gnu-gcc option to support large files... none needed checking for error_at_line... yes checking for gethostbyaddr... yes checking for gethostbyname... yes checking for malloc... yes checking for memset... yes checking for pow... no checking for realloc... yes checking for select... yes checking for socket... yes checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strstr... yes checking for strtol... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/cpp/Makefile config.status: creating src/perl/Makefile config.status: creating config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' dh_auto_build make -j2 make[1]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' make all-recursive make[2]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' Making all in src make[3]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' Making all in cpp make[4]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/cpp' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-bcf_entry.o `test -f 'bcf_entry.cpp' || echo './'`bcf_entry.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-bcf_entry_setters.o `test -f 'bcf_entry_setters.cpp' || echo './'`bcf_entry_setters.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-bcf_file.o `test -f 'bcf_file.cpp' || echo './'`bcf_file.cpp x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-bgzf.o `test -f 'bgzf.c' || echo './'`bgzf.c bgzf.c: In function ‘bgzf_check_EOF’: bgzf.c:60:34: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 60 | #define _bgzf_read(fp, buf, len) fread((buf), 1, (len), (FILE*)(fp)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bgzf.c:622:9: note: in expansion of macro ‘_bgzf_read’ 622 | _bgzf_read(fp->fp, buf, 28); | ^~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-dgeev.o `test -f 'dgeev.cpp' || echo './'`dgeev.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-entry.o `test -f 'entry.cpp' || echo './'`entry.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-entry_filters.o `test -f 'entry_filters.cpp' || echo './'`entry_filters.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-entry_getters.o `test -f 'entry_getters.cpp' || echo './'`entry_getters.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-entry_setters.o `test -f 'entry_setters.cpp' || echo './'`entry_setters.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-gamma.o `test -f 'gamma.cpp' || echo './'`gamma.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-header.o `test -f 'header.cpp' || echo './'`header.cpp x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-knetfile.o `test -f 'knetfile.c' || echo './'`knetfile.c In file included from knetfile.c:46: knetfile.c: In function ‘kftp_send_cmd’: knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ knetfile.c:236:9: note: in expansion of macro ‘netwrite’ 236 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); | ^~~~~~~~ knetfile.c: In function ‘khttp_connect_file’: knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ knetfile.c:415:9: note: in expansion of macro ‘netwrite’ 415 | netwrite(fp->fd, buf, l); | ^~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-output_log.o `test -f 'output_log.cpp' || echo './'`output_log.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-parameters.o `test -f 'parameters.cpp' || echo './'`parameters.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-variant_file.o `test -f 'variant_file.cpp' || echo './'`variant_file.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-variant_file_diff.o `test -f 'variant_file_diff.cpp' || echo './'`variant_file_diff.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-variant_file_filters.o `test -f 'variant_file_filters.cpp' || echo './'`variant_file_filters.cpp variant_file_filters.cpp: In member function ‘void variant_file::filter_individuals_randomly(int)’: variant_file_filters.cpp:129:23: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 129 | random_shuffle(keep_index.begin(), keep_index.end()); // Get a random order | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from variant_file.h:15, from variant_file_filters.cpp:7: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-variant_file_format_convert.o `test -f 'variant_file_format_convert.cpp' || echo './'`variant_file_format_convert.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-variant_file_output.o `test -f 'variant_file_output.cpp' || echo './'`variant_file_output.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-vcf_entry.o `test -f 'vcf_entry.cpp' || echo './'`vcf_entry.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-vcf_entry_setters.o `test -f 'vcf_entry_setters.cpp' || echo './'`vcf_entry_setters.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-vcf_file.o `test -f 'vcf_file.cpp' || echo './'`vcf_file.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-vcftools.o `test -f 'vcftools.cpp' || echo './'`vcftools.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/vcftools-81MqD7/vcftools-0.1.17=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o vcftools vcftools-bcf_entry.o vcftools-bcf_entry_setters.o vcftools-bcf_file.o vcftools-bgzf.o vcftools-dgeev.o vcftools-entry.o vcftools-entry_filters.o vcftools-entry_getters.o vcftools-entry_setters.o vcftools-gamma.o vcftools-header.o vcftools-knetfile.o vcftools-output_log.o vcftools-parameters.o vcftools-variant_file.o vcftools-variant_file_diff.o vcftools-variant_file_filters.o vcftools-variant_file_format_convert.o vcftools-variant_file_output.o vcftools-vcf_entry.o vcftools-vcf_entry_setters.o vcftools-vcf_file.o vcftools-vcftools.o -lz make[4]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/cpp' Making all in perl make[4]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/perl' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/perl' make[4]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[3]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[3]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' make[3]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' make[2]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' make[1]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' dh_auto_test make -j2 check TESTSUITEFLAGS="-j2 --verbose" VERBOSE=1 make[1]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' Making check in src make[2]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' Making check in cpp make[3]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/cpp' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/cpp' Making check in perl make[3]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/perl' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/perl' make[3]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[2]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[2]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' make[2]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' make[1]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' rm -fr -- /tmp/dh-xdg-rundir-4rjdMCOa create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/vcftools.substvars rm -fr -- debian/.debhelper/generated/vcftools/ debian/vcftools/ debian/tmp/ dh_auto_install --destdir=debian/vcftools/ install -m0755 -d /build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools make -j2 install DESTDIR=/build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' Making install in src make[2]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' Making install in cpp make[3]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/cpp' make[4]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/cpp' /usr/bin/mkdir -p '/build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/bin' /usr/bin/mkdir -p '/build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/share/man/man1' /usr/bin/install -c vcftools '/build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/bin' /usr/bin/install -c -m 644 vcftools.1 '/build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/share/man/man1' make[4]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/cpp' make[3]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/cpp' Making install in perl make[3]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/perl' make[4]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/perl' /usr/bin/mkdir -p '/build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/bin' /usr/bin/mkdir -p '/build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr//share/perl5' /usr/bin/install -c -m 644 FaSlice.pm Vcf.pm VcfStats.pm '/build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr//share/perl5' /usr/bin/install -c fill-aa fill-an-ac fill-fs fill-ref-md5 vcf-annotate vcf-compare vcf-concat vcf-consensus vcf-contrast vcf-convert vcf-fix-newlines vcf-fix-ploidy vcf-indel-stats vcf-isec vcf-merge vcf-phased-join vcf-query vcf-shuffle-cols vcf-sort vcf-stats vcf-subset vcf-to-tab vcf-tstv vcf-validator '/build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/bin' make[4]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/perl' make[3]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src/perl' make[3]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[4]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[3]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[2]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17/src' make[2]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' make[3]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' make[2]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' make[1]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' rm -f debian/vcftools.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' dh_install for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' dh_installdocs install -m0755 -d debian/vcftools/usr/share/doc/vcftools install -m0755 -d debian/vcftools/usr/share/doc/vcftools cp --reflink=auto -a ./debian/README.test debian/vcftools/usr/share/doc/vcftools cp --reflink=auto -a ./debian/tests/run-unit-test debian/vcftools/usr/share/doc/vcftools chmod -R u\+rw,go=rX debian/vcftools/usr/share/doc install -p -m0644 debian/copyright debian/vcftools/usr/share/doc/vcftools/copyright rm -f debian/vcftools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' dh_installchangelogs src/perl/ChangeLog install -m0755 -d debian/vcftools/usr/share/doc/vcftools install -p -m0644 debian/.debhelper/generated/vcftools/dh_installchangelogs.dch.trimmed debian/vcftools/usr/share/doc/vcftools/changelog.Debian install -p -m0644 src/perl/ChangeLog debian/vcftools/usr/share/doc/vcftools/changelog make[1]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' rm -f debian/vcftools.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/vcftools-81MqD7/vcftools-0.1.17' dh_installexamples; mkdir -p /build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/share/doc/vcftools/examples/testsuite; mkdir -p /build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/share/doc/vcftools/examples/testdata; cp ./examples/* /build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/share/doc/vcftools/examples/testdata/; find ./src/perl/ \( -name "*.pm" -o -name "*fill*" -o -name "test.t" \) -exec cp \{\} /build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/share/doc/vcftools/examples/testsuite \; sed -i 's#examples#testdata#g' /build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; sed -i 's#I\.\./perl/#I\.\./\.#g' /build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; sed -i 's#\.\./perl/#/usr/bin/#g' /build/vcftools-81MqD7/vcftools-0.1.17/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; for perlscript in `grep -lR '#!/usr/bin/env \+perl' debian/*/usr/share/doc/vcftools/examples` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/build/vcftools-81MqD7/vcftools-0.1.17' dh_installman install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-aa.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-fs.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-compare.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-concat.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-isec.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-query.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-stats.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-subset.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./src/cpp/vcftools.1 debian/vcftools/usr/share/man/man1/vcftools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/vcftools/usr/share/man/man1/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 man-recode --to-code UTF-8 --suffix .dh-new debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcftools.1 mv debian/vcftools/usr/share/man/man1/fill-aa.1.dh-new debian/vcftools/usr/share/man/man1/fill-aa.1 mv debian/vcftools/usr/share/man/man1/fill-an-ac.1.dh-new debian/vcftools/usr/share/man/man1/fill-an-ac.1 mv debian/vcftools/usr/share/man/man1/fill-fs.1.dh-new debian/vcftools/usr/share/man/man1/fill-fs.1 mv debian/vcftools/usr/share/man/man1/fill-ref-md5.1.dh-new debian/vcftools/usr/share/man/man1/fill-ref-md5.1 mv debian/vcftools/usr/share/man/man1/fill-rsIDs.1.dh-new debian/vcftools/usr/share/man/man1/fill-rsIDs.1 mv debian/vcftools/usr/share/man/man1/vcf-annotate.1.dh-new debian/vcftools/usr/share/man/man1/vcf-annotate.1 mv debian/vcftools/usr/share/man/man1/vcf-compare.1.dh-new debian/vcftools/usr/share/man/man1/vcf-compare.1 mv debian/vcftools/usr/share/man/man1/vcf-concat.1.dh-new debian/vcftools/usr/share/man/man1/vcf-concat.1 mv debian/vcftools/usr/share/man/man1/vcf-consensus.1.dh-new debian/vcftools/usr/share/man/man1/vcf-consensus.1 mv debian/vcftools/usr/share/man/man1/vcf-contrast.1.dh-new debian/vcftools/usr/share/man/man1/vcf-contrast.1 mv debian/vcftools/usr/share/man/man1/vcf-convert.1.dh-new debian/vcftools/usr/share/man/man1/vcf-convert.1 mv debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1.dh-new debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 mv debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1.dh-new debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 chmod 0644 -- debian/vcftools/usr/share/man/man1/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 mv debian/vcftools/usr/share/man/man1/vcf-indel-stats.1.dh-new debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 mv debian/vcftools/usr/share/man/man1/vcf-isec.1.dh-new debian/vcftools/usr/share/man/man1/vcf-isec.1 mv debian/vcftools/usr/share/man/man1/vcf-merge.1.dh-new debian/vcftools/usr/share/man/man1/vcf-merge.1 mv debian/vcftools/usr/share/man/man1/vcf-phased-join.1.dh-new debian/vcftools/usr/share/man/man1/vcf-phased-join.1 mv debian/vcftools/usr/share/man/man1/vcf-query.1.dh-new debian/vcftools/usr/share/man/man1/vcf-query.1 mv debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1.dh-new debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 mv debian/vcftools/usr/share/man/man1/vcf-sort.1.dh-new debian/vcftools/usr/share/man/man1/vcf-sort.1 mv debian/vcftools/usr/share/man/man1/vcf-stats.1.dh-new debian/vcftools/usr/share/man/man1/vcf-stats.1 mv debian/vcftools/usr/share/man/man1/vcf-subset.1.dh-new debian/vcftools/usr/share/man/man1/vcf-subset.1 mv debian/vcftools/usr/share/man/man1/vcf-to-tab.1.dh-new debian/vcftools/usr/share/man/man1/vcf-to-tab.1 mv debian/vcftools/usr/share/man/man1/vcf-tstv.1.dh-new debian/vcftools/usr/share/man/man1/vcf-tstv.1 mv debian/vcftools/usr/share/man/man1/vcf-validator.1.dh-new debian/vcftools/usr/share/man/man1/vcf-validator.1 mv debian/vcftools/usr/share/man/man1/vcftools.1.dh-new debian/vcftools/usr/share/man/man1/vcftools.1 chmod 0644 -- debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcftools.1 dh_perl mv debian/vcftools.substvars.new debian/vcftools.substvars rmdir --ignore-fail-on-non-empty --parents debian/vcftools/usr/share/perl5 dh_link dh_strip_nondeterminism dh_compress cd debian/vcftools chmod a-x usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1 gzip -9nf usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1 cd '/build/vcftools-81MqD7/vcftools-0.1.17' dh_fixperms find debian/vcftools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/vcftools/usr/share/doc -type f -a -true -a ! -regex 'debian/vcftools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/vcftools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/share/perl5 -type f -perm -5 -name '*.pm' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a-X find debian/vcftools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/vcftools/usr/bin/vcftools dh_strip -a install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/c8 objcopy --only-keep-debug --compress-debug-sections debian/vcftools/usr/bin/vcftools debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/c8/246eeeee94c84a3c2112e8462c82d4fd7d9d85.debug chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/c8/246eeeee94c84a3c2112e8462c82d4fd7d9d85.debug strip --remove-section=.comment --remove-section=.note debian/vcftools/usr/bin/vcftools objcopy --add-gnu-debuglink debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/c8/246eeeee94c84a3c2112e8462c82d4fd7d9d85.debug debian/vcftools/usr/bin/vcftools install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/usr/share/doc ln -s vcftools debian/.debhelper/vcftools/dbgsym-root/usr/share/doc/vcftools-dbgsym install -m0755 -d debian/.debhelper/vcftools dh_makeshlibs -a rm -f debian/vcftools/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/vcftools/DEBIAN dpkg-shlibdeps -Tdebian/vcftools.substvars debian/vcftools/usr/bin/vcftools dh_installdeb install -m0755 -d debian/vcftools/DEBIAN dh_gencontrol install -m0755 -d debian/vcftools/DEBIAN echo misc:Depends= >> debian/vcftools.substvars echo misc:Pre-Depends= >> debian/vcftools.substvars install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/DEBIAN dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -cdebian/control -Pdebian/.debhelper/vcftools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=vcftools-dbgsym -DDepends="vcftools (= \${binary:Version})" -DDescription="debug symbols for vcftools" -DBuild-Ids=c8246eeeee94c84a3c2112e8462c82d4fd7d9d85 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/DEBIAN/control dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -cdebian/control -Pdebian/vcftools chmod 0644 -- debian/vcftools/DEBIAN/control dh_md5sums install -m0755 -d debian/vcftools/DEBIAN cd debian/vcftools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/vcftools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/DEBIAN cd debian/.debhelper/vcftools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/vcftools .. dpkg-deb --root-owner-group --build debian/.debhelper/vcftools/dbgsym-root .. dpkg-deb: building package 'vcftools' in '../vcftools_0.1.17-1_amd64.deb'. dpkg-deb: building package 'vcftools-dbgsym' in '../vcftools-dbgsym_0.1.17-1_amd64.deb'. dpkg-genbuildinfo -O../vcftools_0.1.17-1_amd64.buildinfo dpkg-genchanges -O../vcftools_0.1.17-1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2026-07-11T21:37:09Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 11 Jul 2026 21:37:10 +0000 | +------------------------------------------------------------------------------+ vcftools_0.1.17-1_amd64.changes: -------------------------------- Format: 1.8 Date: Fri, 22 Aug 2025 08:15:21 +0200 Source: vcftools Binary: vcftools vcftools-dbgsym Architecture: source amd64 Version: 0.1.17-1 Distribution: perl-5.44-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Dylan Aïssi Description: vcftools - Collection of tools to work with VCF files Changes: vcftools (0.1.17-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.2 (routine-update) * Replace transitional package pkg-config by pkgconf in Build-Depends (routine-update) * Refresh patches Checksums-Sha1: af5aa8bb7dccd167b04e5bea8faecebae2534e5c 1160 vcftools_0.1.17-1.dsc 72059d447fd02bb6f6f475e096097774deebbb88 247685 vcftools_0.1.17.orig.tar.gz 4bc6a321027451c34ccc24b234bd0d8f240aa76e 13976 vcftools_0.1.17-1.debian.tar.xz e01f8d7e56235d8f4ea36e7fbfd4e5a2ad3fe235 5460584 vcftools-dbgsym_0.1.17-1_amd64.deb 5741b75f48daeb0ab2f6e0e56080a5770289b756 5304 vcftools_0.1.17-1_amd64.buildinfo 2c4c626da2f32cf64c41c5cf191f1460e0fd1faf 480228 vcftools_0.1.17-1_amd64.deb Checksums-Sha256: c5fd9aa6cb0d50f200babcedb253125c82235313e7fb1e993925b31359bd4e3e 1160 vcftools_0.1.17-1.dsc 00b54fc7349179c2efbdab0e4dcb65a69e7b0ab0d0d29b59cc823140d0b40bff 247685 vcftools_0.1.17.orig.tar.gz fee2757af403c952c89a607bf703f5bf63362cf9e6d941447c8acfbd624d6195 13976 vcftools_0.1.17-1.debian.tar.xz b13250452368451bb3e50ce36a01d6c1beb3d56fca8ceed99676ac8cceca4a66 5460584 vcftools-dbgsym_0.1.17-1_amd64.deb fcaba98e54f0cf0ccdb14ebbbee113517c8d38459265a0b885b3275d7c9ac777 5304 vcftools_0.1.17-1_amd64.buildinfo 49c129aaafd8a85487a61264d4833056d83ee27f528be5b4c5143b9617ca02dd 480228 vcftools_0.1.17-1_amd64.deb Files: 64aaf97aa0d036555fc7b7f336b63cb1 1160 science optional vcftools_0.1.17-1.dsc 1585c9f9f25b47dca70a0e611a249cb6 247685 science optional vcftools_0.1.17.orig.tar.gz 938ee270ea9acc60822efcd21650b81c 13976 science optional vcftools_0.1.17-1.debian.tar.xz 474c7d1d82c56d4a7c122f9f0115960c 5460584 debug optional vcftools-dbgsym_0.1.17-1_amd64.deb d79476e4b2c123bab8764752d7b277a4 5304 science optional vcftools_0.1.17-1_amd64.buildinfo 44593f15526b4a9ff8cde819aa0da13f 480228 science optional vcftools_0.1.17-1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Sat, 11 Jul 2026 21:37:10 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: vcftools Binary: vcftools vcftools-dbgsym Architecture: amd64 source Version: 0.1.17-1 Checksums-Md5: 64aaf97aa0d036555fc7b7f336b63cb1 1160 vcftools_0.1.17-1.dsc 474c7d1d82c56d4a7c122f9f0115960c 5460584 vcftools-dbgsym_0.1.17-1_amd64.deb 44593f15526b4a9ff8cde819aa0da13f 480228 vcftools_0.1.17-1_amd64.deb Checksums-Sha1: af5aa8bb7dccd167b04e5bea8faecebae2534e5c 1160 vcftools_0.1.17-1.dsc e01f8d7e56235d8f4ea36e7fbfd4e5a2ad3fe235 5460584 vcftools-dbgsym_0.1.17-1_amd64.deb 2c4c626da2f32cf64c41c5cf191f1460e0fd1faf 480228 vcftools_0.1.17-1_amd64.deb Checksums-Sha256: c5fd9aa6cb0d50f200babcedb253125c82235313e7fb1e993925b31359bd4e3e 1160 vcftools_0.1.17-1.dsc b13250452368451bb3e50ce36a01d6c1beb3d56fca8ceed99676ac8cceca4a66 5460584 vcftools-dbgsym_0.1.17-1_amd64.deb 49c129aaafd8a85487a61264d4833056d83ee27f528be5b4c5143b9617ca02dd 480228 vcftools_0.1.17-1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 11 Jul 2026 21:37:09 +0000 Build-Path: /build/vcftools-81MqD7/vcftools-0.1.17 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-3), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3), binutils (= 2.46.50.20260617-1), binutils-common (= 2.46.50.20260617-1), binutils-x86-64-linux-gnu (= 2.46.50.20260617-1), bsdextrautils (= 2.42.2-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.3.0-1), cpp-15-x86-64-linux-gnu (= 15.3.0-1), cpp-x86-64-linux-gnu (= 4:15.2.0-5+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.3), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.47-4), findutils (= 4.10.0-4), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.3.0-1), g++-15-x86-64-linux-gnu (= 15.3.0-1), g++-x86-64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.3.0-1), gcc-15-base (= 15.3.0-1), gcc-15-x86-64-linux-gnu (= 15.3.0-1), gcc-16-base (= 16.1.0-2), gcc-x86-64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 1.0-3), gettext-base (= 1.0-3), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.1.0-2), libatomic1 (= 16.1.0-2), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46.50.20260617-1), libblkid1 (= 2.42.2-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-17), libc-dev-bin (= 2.42-17), libc-gconv-modules-extra (= 2.42-17), libc6 (= 2.42-17), libc6-dev (= 2.42-17), libcap-ng0 (= 0.9.3-1+b1), libcc1-0 (= 16.1.0-2), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46.50.20260617-1), libctf0 (= 2.46.50.20260617-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-15-dev (= 15.3.0-1), libgcc-s1 (= 16.1.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.1.0-2), libgprofng0 (= 2.46.50.20260617-1), libhwasan0 (= 16.1.0-2), libisl23 (= 0.27-2), libitm1 (= 16.1.0-2), libjansson4 (= 2.15.1-1), liblsan0 (= 16.1.0-2), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.2-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.46-1+b2), libperl5.44 (= 5.44.0~rc2-1), libpipeline1 (= 1.5.8-3), libpkgconf7 (= 2.5.1-4), libquadmath0 (= 16.1.0-2), libseccomp2 (= 2.6.1-1), libselinux1 (= 3.11-2), libsframe3 (= 2.46.50.20260617-1), libsmartcols1 (= 2.42.2-1), libssl3t64 (= 3.6.3-1), libstdc++-15-dev (= 15.3.0-1), libstdc++6 (= 16.1.0-2), libsystemd0 (= 261.1-2), libtinfo6 (= 6.6+20260608-2), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-2), libubsan1 (= 16.1.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 261.1-2), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-1), libxml2-16 (= 2.15.3+dfsg-1), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 7.1.3-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.3-1), patch (= 2.8-2), perl (= 5.44.0~rc2-1), perl-base (= 5.44.0~rc2-1), perl-modules-5.44 (= 5.44.0~rc2-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), rpcsvc-proto (= 1.4.4-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), util-linux (= 2.42.2-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1755843321" +------------------------------------------------------------------------------+ | Package contents Sat, 11 Jul 2026 21:37:10 +0000 | +------------------------------------------------------------------------------+ vcftools-dbgsym_0.1.17-1_amd64.deb ---------------------------------- new Debian package, version 2.0. size 5460584 bytes: control archive=536 bytes. 377 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: vcftools-dbgsym Source: vcftools Version: 0.1.17-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 5589 Depends: vcftools (= 0.1.17-1) Section: debug Priority: optional Description: debug symbols for vcftools Build-Ids: c8246eeeee94c84a3c2112e8462c82d4fd7d9d85 drwxr-xr-x root/root 0 2025-08-22 06:15 ./ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/lib/ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/lib/debug/.build-id/c8/ -rw-r--r-- root/root 5712328 2025-08-22 06:15 ./usr/lib/debug/.build-id/c8/246eeeee94c84a3c2112e8462c82d4fd7d9d85.debug drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-08-22 06:15 ./usr/share/doc/vcftools-dbgsym -> vcftools vcftools_0.1.17-1_amd64.deb --------------------------- new Debian package, version 2.0. size 480228 bytes: control archive=3416 bytes. 689 bytes, 15 lines control 8619 bytes, 114 lines md5sums Package: vcftools Version: 0.1.17-1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1857 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.6), perl:any Recommends: tabix Section: science Priority: optional Homepage: https://vcftools.github.io/ Description: Collection of tools to work with VCF files VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. drwxr-xr-x root/root 0 2025-08-22 06:15 ./ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/bin/ -rwxr-xr-x root/root 6100 2025-08-22 06:15 ./usr/bin/fill-aa -rwxr-xr-x root/root 1257 2025-08-22 06:15 ./usr/bin/fill-an-ac -rwxr-xr-x root/root 8064 2025-08-22 06:15 ./usr/bin/fill-fs -rwxr-xr-x root/root 6563 2025-08-22 06:15 ./usr/bin/fill-ref-md5 -rwxr-xr-x root/root 51249 2025-08-22 06:15 ./usr/bin/vcf-annotate -rwxr-xr-x root/root 57386 2025-08-22 06:15 ./usr/bin/vcf-compare -rwxr-xr-x root/root 10948 2025-08-22 06:15 ./usr/bin/vcf-concat -rwxr-xr-x root/root 9222 2025-08-22 06:15 ./usr/bin/vcf-consensus -rwxr-xr-x root/root 8793 2025-08-22 06:15 ./usr/bin/vcf-contrast -rwxr-xr-x root/root 6167 2025-08-22 06:15 ./usr/bin/vcf-convert -rwxr-xr-x root/root 2294 2025-08-22 06:15 ./usr/bin/vcf-fix-newlines -rwxr-xr-x root/root 10811 2025-08-22 06:15 ./usr/bin/vcf-fix-ploidy -rwxr-xr-x root/root 4372 2025-08-22 06:15 ./usr/bin/vcf-indel-stats -rwxr-xr-x root/root 21169 2025-08-22 06:15 ./usr/bin/vcf-isec -rwxr-xr-x root/root 22984 2025-08-22 06:15 ./usr/bin/vcf-merge -rwxr-xr-x root/root 23230 2025-08-22 06:15 ./usr/bin/vcf-phased-join -rwxr-xr-x root/root 15828 2025-08-22 06:15 ./usr/bin/vcf-query -rwxr-xr-x root/root 2297 2025-08-22 06:15 ./usr/bin/vcf-shuffle-cols -rwxr-xr-x root/root 3306 2025-08-22 06:15 ./usr/bin/vcf-sort -rwxr-xr-x root/root 4870 2025-08-22 06:15 ./usr/bin/vcf-stats -rwxr-xr-x root/root 7702 2025-08-22 06:15 ./usr/bin/vcf-subset -rwxr-xr-x root/root 2539 2025-08-22 06:15 ./usr/bin/vcf-to-tab -rwxr-xr-x root/root 1816 2025-08-22 06:15 ./usr/bin/vcf-tstv -rwxr-xr-x root/root 3349 2025-08-22 06:15 ./usr/bin/vcf-validator -rwxr-xr-x root/root 1100032 2025-08-22 06:15 ./usr/bin/vcftools drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/doc/vcftools/ -rw-r--r-- root/root 261 2025-08-22 06:15 ./usr/share/doc/vcftools/README.test -rw-r--r-- root/root 726 2025-08-22 06:15 ./usr/share/doc/vcftools/changelog.Debian.gz -rw-r--r-- root/root 1961 2025-05-15 00:30 ./usr/share/doc/vcftools/changelog.gz -rw-r--r-- root/root 1155 2025-08-22 06:15 ./usr/share/doc/vcftools/copyright drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/ -rw-r--r-- root/root 1685 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/annotate-test.vcf -rw-r--r-- root/root 1376 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/annotate.out -rw-r--r-- root/root 299 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/annotate.txt -rw-r--r-- root/root 3107 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/annotate2.out -rw-r--r-- root/root 1394 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/annotate3.out -rw-r--r-- root/root 522 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/cmp-test-a-3.3.vcf -rw-r--r-- root/root 638 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/cmp-test-a.vcf -rw-r--r-- root/root 520 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/cmp-test-b-3.3.vcf -rw-r--r-- root/root 636 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/cmp-test-b.vcf -rw-r--r-- root/root 2633 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/cmp-test.out -rw-r--r-- root/root 1180 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/concat-a.vcf -rw-r--r-- root/root 674 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/concat-b.vcf -rw-r--r-- root/root 972 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/concat-c.vcf -rw-r--r-- root/root 2074 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/concat.out -rw-r--r-- root/root 1038 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/consensus.fa -rw-r--r-- root/root 1037 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/consensus.out -rw-r--r-- root/root 1037 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/consensus.out2 -rw-r--r-- root/root 275 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/consensus.vcf -rw-r--r-- root/root 6951 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/contrast.out -rw-r--r-- root/root 28065 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/contrast.vcf -rw-r--r-- root/root 1524 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/fill-an-ac.out -rw-r--r-- root/root 4901 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/filters.txt -rw-r--r-- root/root 1924 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.out -rw-r--r-- root/root 42 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.samples -rw-r--r-- root/root 223 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.txt -rw-r--r-- root/root 9005 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.vcf -rw-r--r-- root/root 564 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/floats.vcf -rw-r--r-- root/root 48 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/indel-stats.out -rw-r--r-- root/root 24 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/indel-stats.tab -rw-r--r-- root/root 523 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/indel-stats.vcf -rw-r--r-- root/root 2086 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/invalid-4.0.vcf -rw-r--r-- root/root 1120 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/isec-n2-test.vcf.out -rw-r--r-- root/root 965 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/merge-test-a.vcf -rw-r--r-- root/root 1020 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/merge-test-b.vcf -rw-r--r-- root/root 798 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/merge-test-c.vcf -rw-r--r-- root/root 2240 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/merge-test.vcf.out -rw-r--r-- root/root 230 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/parse-test.vcf -rw-r--r-- root/root 1435 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/perl-api-1.pl -rw-r--r-- root/root 255 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/query-test.out -rw-r--r-- root/root 638 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/shuffle-test.vcf -rw-r--r-- root/root 522 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/subset.SNPs.out -rw-r--r-- root/root 931 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/subset.indels.out -rw-r--r-- root/root 1229 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/subset.vcf -rw-r--r-- root/root 1612 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/valid-3.3.vcf -rw-r--r-- root/root 2182 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf -rw-r--r-- root/root 5161 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf.stats -rw-r--r-- root/root 2999 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testdata/valid-4.1.vcf drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testsuite/ -rw-r--r-- root/root 6724 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testsuite/FaSlice.pm -rw-r--r-- root/root 107598 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testsuite/Vcf.pm -rw-r--r-- root/root 18147 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testsuite/VcfStats.pm -rwxr-xr-x root/root 6100 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testsuite/fill-aa -rwxr-xr-x root/root 1257 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testsuite/fill-an-ac -rwxr-xr-x root/root 8064 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testsuite/fill-fs -rwxr-xr-x root/root 6563 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testsuite/fill-ref-md5 -rw-r--r-- root/root 18274 2025-08-22 06:15 ./usr/share/doc/vcftools/examples/testsuite/test.t -rw-r--r-- root/root 381 2025-08-22 06:15 ./usr/share/doc/vcftools/run-unit-test drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/man/ drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/man/man1/ -rw-r--r-- root/root 272 2025-08-22 06:15 ./usr/share/man/man1/fill-aa.1.gz -rw-r--r-- root/root 241 2025-08-22 06:15 ./usr/share/man/man1/fill-an-ac.1.gz -rw-r--r-- root/root 664 2025-08-22 06:15 ./usr/share/man/man1/fill-fs.1.gz -rw-r--r-- root/root 654 2025-08-22 06:15 ./usr/share/man/man1/fill-ref-md5.1.gz -rw-r--r-- root/root 280 2025-08-22 06:15 ./usr/share/man/man1/fill-rsIDs.1.gz -rw-r--r-- root/root 1281 2025-08-22 06:15 ./usr/share/man/man1/vcf-annotate.1.gz -rw-r--r-- root/root 852 2025-08-22 06:15 ./usr/share/man/man1/vcf-compare.1.gz -rw-r--r-- root/root 518 2025-08-22 06:15 ./usr/share/man/man1/vcf-concat.1.gz -rw-r--r-- root/root 277 2025-08-22 06:15 ./usr/share/man/man1/vcf-consensus.1.gz -rw-r--r-- root/root 724 2025-08-22 06:15 ./usr/share/man/man1/vcf-contrast.1.gz -rw-r--r-- root/root 389 2025-08-22 06:15 ./usr/share/man/man1/vcf-convert.1.gz -rw-r--r-- root/root 429 2025-08-22 06:15 ./usr/share/man/man1/vcf-fix-newlines.1.gz -rw-r--r-- root/root 651 2025-08-22 06:15 ./usr/share/man/man1/vcf-fix-ploidy.1.gz -rw-r--r-- root/root 366 2025-08-22 06:15 ./usr/share/man/man1/vcf-indel-stats.1.gz -rw-r--r-- root/root 956 2025-08-22 06:15 ./usr/share/man/man1/vcf-isec.1.gz -rw-r--r-- root/root 599 2025-08-22 06:15 ./usr/share/man/man1/vcf-merge.1.gz -rw-r--r-- root/root 551 2025-08-22 06:15 ./usr/share/man/man1/vcf-phased-join.1.gz -rw-r--r-- root/root 500 2025-08-22 06:15 ./usr/share/man/man1/vcf-query.1.gz -rw-r--r-- root/root 343 2025-08-22 06:15 ./usr/share/man/man1/vcf-shuffle-cols.1.gz -rw-r--r-- root/root 254 2025-08-22 06:15 ./usr/share/man/man1/vcf-sort.1.gz -rw-r--r-- root/root 685 2025-08-22 06:15 ./usr/share/man/man1/vcf-stats.1.gz -rw-r--r-- root/root 558 2025-08-22 06:15 ./usr/share/man/man1/vcf-subset.1.gz -rw-r--r-- root/root 280 2025-08-22 06:15 ./usr/share/man/man1/vcf-to-tab.1.gz -rw-r--r-- root/root 227 2025-08-22 06:15 ./usr/share/man/man1/vcf-tstv.1.gz -rw-r--r-- root/root 307 2025-08-22 06:15 ./usr/share/man/man1/vcf-validator.1.gz -rw-r--r-- root/root 8759 2025-08-22 06:15 ./usr/share/man/man1/vcftools.1.gz drwxr-xr-x root/root 0 2025-08-22 06:15 ./usr/share/perl5/ -rw-r--r-- root/root 6724 2025-08-22 06:15 ./usr/share/perl5/FaSlice.pm -rw-r--r-- root/root 107598 2025-08-22 06:15 ./usr/share/perl5/Vcf.pm -rw-r--r-- root/root 18147 2025-08-22 06:15 ./usr/share/perl5/VcfStats.pm +------------------------------------------------------------------------------+ | Post Build Sat, 11 Jul 2026 21:37:12 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 11 Jul 2026 21:37:12 +0000 | +------------------------------------------------------------------------------+ Purging /build/vcftools-81MqD7 Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 11 Jul 2026 21:37:13 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 81136 Build-Time: 71 Distribution: perl-5.44-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/vcftools_0.1.17-1.dsc Machine Architecture: amd64 Package: vcftools Package-Time: 88 Source-Version: 0.1.17-1 Space: 81136 Status: successful Version: 0.1.17-1 -------------------------------------------------------------------------------- Finished at 2026-07-11T21:37:09Z Build needed 00:01:28, 81136k disk space