sbuild (Debian sbuild) 0.91.10 (27 June 2026) on carme.larted.org.uk +==============================================================================+ | trim-galore 0.6.10-1 (amd64) Sat, 11 Jul 2026 21:48:00 +0000 | +==============================================================================+ Package: trim-galore Version: 0.6.10-1 Source Version: 0.6.10-1 Distribution: perl-5.44-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sat, 11 Jul 2026 21:48:00 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup trim-galore_0.6.10-1 perl-5.44-throwaway amd64 --------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup trim-galore_0.6.10-1 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sat, 11 Jul 2026 21:48:01 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Get:2 http://deb.debian.org/debian unstable InRelease [193 kB] Get:3 http://deb.debian.org/debian sid InRelease [193 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-07-11-2000.26-F-2026-07-11-2000.26.pdiff [28.0 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-07-11-2000.26-F-2026-07-11-2000.26.pdiff [28.0 kB] Get:6 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:7 http://deb.debian.org/debian sid/main Sources T-2026-07-11-2000.26-F-2026-07-11-2000.26.pdiff [14.0 kB] Get:7 http://deb.debian.org/debian sid/main Sources T-2026-07-11-2000.26-F-2026-07-11-2000.26.pdiff [14.0 kB] Fetched 555 kB in 6s (88.7 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dirmngr gnupg gnupg-l10n gpg gpg-agent gpgconf gpgsm libp11-kit0 pinentry-curses 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3413 kB of archives. After this operation, 28.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian unstable/main amd64 dirmngr amd64 2.4.9-7 [382 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 gpg-agent amd64 2.4.9-7 [270 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 gpg amd64 2.4.9-7 [636 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 gpgconf amd64 2.4.9-7 [126 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 gnupg all 2.4.9-7 [415 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gpgsm amd64 2.4.9-7 [274 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 pinentry-curses amd64 1.3.3-2 [91.2 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 gnupg-l10n all 2.4.9-7 [748 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.26.4-1 [471 kB] Fetched 3413 kB in 0s (110 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15696 files and directories currently installed.) Preparing to unpack .../0-dirmngr_2.4.9-7_amd64.deb ... Unpacking dirmngr (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../1-gpg-agent_2.4.9-7_amd64.deb ... Unpacking gpg-agent (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../2-gpg_2.4.9-7_amd64.deb ... Unpacking gpg (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../3-gpgconf_2.4.9-7_amd64.deb ... Unpacking gpgconf (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../4-gnupg_2.4.9-7_all.deb ... Unpacking gnupg (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../5-gpgsm_2.4.9-7_amd64.deb ... Unpacking gpgsm (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../6-pinentry-curses_1.3.3-2_amd64.deb ... Unpacking pinentry-curses (1.3.3-2) over (1.3.2-4) ... Preparing to unpack .../7-gnupg-l10n_2.4.9-7_all.deb ... Unpacking gnupg-l10n (2.4.9-7) over (2.4.9-5) ... Preparing to unpack .../8-libp11-kit0_0.26.4-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.26.4-1) over (0.26.2-3) ... Setting up pinentry-curses (1.3.3-2) ... Setting up gnupg-l10n (2.4.9-7) ... Setting up libp11-kit0:amd64 (0.26.4-1) ... Setting up gpgconf (2.4.9-7) ... Setting up gpg (2.4.9-7) ... Setting up gpg-agent (2.4.9-7) ... Setting up gpgsm (2.4.9-7) ... Setting up dirmngr (2.4.9-7) ... Setting up gnupg (2.4.9-7) ... Processing triggers for libc-bin (2.42-17) ... +------------------------------------------------------------------------------+ | Fetch source files Sat, 11 Jul 2026 21:48:10 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/trim-galore_0.6.10-1.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 11 Jul 2026 21:48:11 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential Filtered Build-Depends: debhelper-compat (= 13), build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/trim-galore-PVSn2m/resolver-TWOtEO/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/trim-galore-PVSn2m/resolver-TWOtEO/apt_archive ./ InRelease Get:2 copy:/build/trim-galore-PVSn2m/resolver-TWOtEO/apt_archive ./ Release [609 B] Ign:3 copy:/build/trim-galore-PVSn2m/resolver-TWOtEO/apt_archive ./ Release.gpg Get:4 copy:/build/trim-galore-PVSn2m/resolver-TWOtEO/apt_archive ./ Sources [600 B] Get:5 copy:/build/trim-galore-PVSn2m/resolver-TWOtEO/apt_archive ./ Packages [639 B] Fetched 1848 B in 0s (117 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.9 MB of archives. After this operation, 54.3 MB of additional disk space will be used. Get:1 copy:/build/trim-galore-PVSn2m/resolver-TWOtEO/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [856 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-3 [332 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.2-1 [100.0 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-3 [820 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-3 [2658 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.3 [934 kB] Preconfiguring packages ... Fetched 11.9 MB in 0s (132 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 15696 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-3_amd64.deb ... Unpacking gettext-base (1.0-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.24.1-1_amd64.deb ... Unpacking groff-base (1.24.1-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.42.2-1_amd64.deb ... Unpacking bsdextrautils (2.42.2-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-3) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.73-2_all.deb ... Unpacking autoconf (2.73-2) ... Selecting previously unselected package autotools-dev. 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Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.195-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.195-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-4_amd64.deb ... Unpacking dwz (0.16-4) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../23-libxml2-16_2.15.3+dfsg-1_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.3+dfsg-1) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_1.0-3_amd64.deb ... Unpacking gettext (1.0-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.22_all.deb ... Unpacking po-debconf (1.0.22) ... Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_14.3_all.deb ... Unpacking debhelper (14.3) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../28-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up bsdextrautils (2.42.2-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.3+dfsg-1) ... Setting up libdebhelper-perl (14.3) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-3) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.47-4) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up autopoint (1.0-3) ... Setting up autoconf (2.73-2) ... Setting up dwz (0.16-4) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-3) ... Setting up libtool (2.5.4-11) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (22) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' → '/usr/lib/systemd/system/man-db.timer'. Setting up debhelper (14.3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-17) ... +------------------------------------------------------------------------------+ | Check architectures Sat, 11 Jul 2026 21:48:16 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Sat, 11 Jul 2026 21:48:16 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.46.50.20260617-1 dpkg-dev_1.23.7 g++-15_15.3.0-1 gcc-15_15.3.0-1 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 linux-libc-dev_7.1.3-1 Package versions: apt_3.3.1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.46.50.20260617-1 binutils-common_2.46.50.20260617-1 binutils-x86-64-linux-gnu_2.46.50.20260617-1 bsdextrautils_2.42.2-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.3.0-1 cpp-15-x86-64-linux-gnu_15.3.0-1 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-7 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.47-4 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.3.0-1 g++-15-x86-64-linux-gnu_15.3.0-1 g++-x86-64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.3.0-1 gcc-15-base_15.3.0-1 gcc-15-x86-64-linux-gnu_15.3.0-1 gcc-16-base_16.1.0-2 gcc-x86-64-linux-gnu_4:15.2.0-5+b1 gettext_1.0-3 gettext-base_1.0-3 gnupg_2.4.9-7 gnupg-l10n_2.4.9-7 gpg_2.4.9-7 gpg-agent_2.4.9-7 gpgconf_2.4.9-7 gpgsm_2.4.9-7 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.1 libarchive-zip-perl_1.68-1 libasan8_16.1.0-2 libassuan9_3.0.2-2+b2 libatomic1_16.1.0-2 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46.50.20260617-1 libblkid1_2.42.2-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-17 libc-dev-bin_2.42-17 libc-gconv-modules-extra_2.42-17 libc6_2.42-17 libc6-dev_2.42-17 libcap-ng0_0.9.3-1+b1 libcc1-0_16.1.0-2 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46.50.20260617-1 libctf0_2.46.50.20260617-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdpkg-perl_1.23.7 libeatmydata1_131-2+b2 libelf1t64_0.195-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-15-dev_15.3.0-1 libgcc-s1_16.1.0-2 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.1.0-2 libgpg-error0_1.61-3 libgprofng0_2.46.50.20260617-1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.1.0-2 libidn2-0_2.3.8-5 libisl23_0.27-2 libitm1_16.1.0-2 libjansson4_2.15.1-1 libksba8_1.8.0-3 libldap2_2.6.13+dfsg-1+b1 liblsan0_16.1.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.4-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-8 libperl5.44_5.44.0~rc2-1 libpipeline1_1.5.8-3 libquadmath0_16.1.0-2 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.1-1 libselinux1_3.11-2 libsframe3_2.46.50.20260617-1 libsmartcols1_2.42.2-1 libsqlite3-0_3.53.3-1 libssl3t64_3.6.3-1 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 libsystemd-shared_261.1-2 libsystemd0_261.1-2 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.5.4-11 libtsan2_16.1.0-2 libtss2-esys-3.0.2-0t64_4.1.3-6 libtss2-mu-4.0.1-0t64_4.1.3-6 libtss2-rc0t64_4.1.3-6 libtss2-sys1t64_4.1.3-6 libtss2-tcti-cmd0t64_4.1.3-6 libtss2-tcti-device0t64_4.1.3-6 libtss2-tcti-mssim0t64_4.1.3-6 libtss2-tcti-swtpm0t64_4.1.3-6 libubsan1_16.1.0-2 libuchardet0_0.0.8-2+b2 libudev1_261.1-2 libunistring5_1.4.2-1 libuuid1_2.42.2-1 libxml2-16_2.15.3+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.1.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 mount_2.42.2-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.3-1 patch_2.8-2 perl_5.44.0~rc2-1 perl-base_5.44.0~rc2-1 perl-modules-5.40_5.40.1-8 perl-modules-5.44_5.44.0~rc2-1 pinentry-curses_1.3.3-2 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.4.0-1 systemd_261.1-2 systemd-tpm_261.1-2 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 tpm-udev_4.1.3-6 util-linux_2.42.2-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sat, 11 Jul 2026 21:48:16 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: trim-galore Binary: trim-galore Architecture: all Version: 0.6.10-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/trim-galore Vcs-Git: https://salsa.debian.org/med-team/trim-galore.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13) Package-List: trim-galore deb science optional arch=all Checksums-Sha1: dd1320b1efb03f9ee57bb1ee021746a686e83ec7 26831358 trim-galore_0.6.10.orig.tar.gz f873bbd10ee072e43990e6ad12c2f597614864b4 10796 trim-galore_0.6.10-1.debian.tar.xz Checksums-Sha256: 3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017 26831358 trim-galore_0.6.10.orig.tar.gz 3977f48b27fe4ec7f21ae363eb22fa618d476d5b78d0826daeb94c20d2741c29 10796 trim-galore_0.6.10-1.debian.tar.xz Files: ce8ea65db052838656fd3d760c17d9f9 26831358 trim-galore_0.6.10.orig.tar.gz c485f4f2566efcfb88ba74802ddc9452 10796 trim-galore_0.6.10-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPgEYARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFp7Q//T5CkpDRQmXldC9TnTUPKc+9DsZlKog0p zctsO1n3xQRxHD7BP2nnPpJUdurxrbE/KkugEoRAYeHOpQps3UdBxTJkfVOtRUrt qg8N6okXCm4KIU/HthcuUi2xQFbUQ1rcRAwPsgyI4AWuSkFvvtXPkn83aeRvtaHQ 4y8XbpqOQ8LK9kBIchY5kA0zclNFh9elYMwIga15Z/syw1RgOdoSOIvInqtTuw4k ZfFonCS9vJeEoTWyuYZA3hXb7jAeYgxiXslcNTgwtXinBGJ/8/odEVslh//pzU9C 8aMW1gyEVoWdaW31MAPnWHhjoi6jsmpgk5ARl/GiUKE5BlxuAgDcqDRM1B/EWdRp BmoqNp19sMHBG2y5P9VUK5Vp6XrHvmukmkzUGIgA4EHsfs/wjUzfAgZvmefJoGhK 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trim-galore_0.6.10-1.debian.tar.xz clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Sat, 11 Jul 2026 21:48:17 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network trim-galore_0.6.10-1 perl-5.44-throwaway amd64 --------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network trim-galore_0.6.10-1 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/trim-galore-PVSn2m/trim-galore-0.6.10 SCHROOT_ALIAS_NAME=perl-5.44-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.44-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.44-amd64-debomatic-7c365051-b675-42a8-9686-1b6d16bae490 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package trim-galore dpkg-buildpackage: info: source version 0.6.10-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/trim-galore.substvars debian/files rm -fr -- debian/trim-galore/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building trim-galore using existing ../trim-galore_0.6.10.orig.tar.gz dpkg-source: info: building trim-galore in ../trim-galore_0.6.10-1.debian.tar.xz dpkg-source: info: building trim-galore in ../trim-galore_0.6.10-1.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/trim-galore.substvars rm -fr -- debian/.debhelper/generated/trim-galore/ debian/trim-galore/ debian/tmp/ dh_auto_install --destdir=debian/trim-galore/ install -m0755 -d /build/trim-galore-PVSn2m/trim-galore-0.6.10/debian/trim-galore dh_install install -m0755 -d debian/trim-galore/usr/bin cp --reflink=auto -a ./trim_galore debian/trim-galore/usr/bin/ dh_installdocs install -m0755 -d debian/trim-galore/usr/share/doc/trim-galore install -p -m0644 debian/copyright debian/trim-galore/usr/share/doc/trim-galore/copyright dh_installchangelogs install -m0755 -d debian/trim-galore/usr/share/doc/trim-galore install -p -m0644 debian/.debhelper/generated/trim-galore/dh_installchangelogs.dch.trimmed debian/trim-galore/usr/share/doc/trim-galore/changelog.Debian install -p -m0644 ./CHANGELOG.md debian/trim-galore/usr/share/doc/trim-galore/changelog debian/rules override_dh_installexamples make[1]: Entering directory '/build/trim-galore-PVSn2m/trim-galore-0.6.10' dh_installexamples install -m0755 -d debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/4_seqs_with_Ns.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/clock_10K_R1.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/clock_10K_R2.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/colorspace_file.fastq debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/empty_file.fastq debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/illumina_100K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/illumina_100K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/illumina_10K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/illumina_10K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/illumina_10K_trimmed.fq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/nextera_100K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/nextera_100K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/smallRNA_100K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/smallRNA_100K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/smallRNA_100K_R1.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/smallRNA_100K_R2.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/smallRNA_100K_R2.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/truncated.fq.gz debian/trim-galore/usr/share/doc/trim-galore/examples rm -rf debian/trim-galore/usr/share/doc/trim-galore/examples/truncated.fq.gz \ debian/trim-galore/usr/share/doc/trim-galore/examples/smallRNA_100K_R2.fastq.gz \ debian/trim-galore/usr/share/doc/trim-galore/examples/*.fastq \ debian/trim-galore/usr/share/doc/trim-galore/examples/*.txt make[1]: Leaving directory '/build/trim-galore-PVSn2m/trim-galore-0.6.10' dh_installman install -m0755 -d debian/trim-galore/usr/share/man/man1/ install -p -m0644 ./debian/trim_galore.1 debian/trim-galore/usr/share/man/man1/trim_galore.1 man-recode --to-code UTF-8 --suffix .dh-new debian/trim-galore/usr/share/man/man1/trim_galore.1 mv debian/trim-galore/usr/share/man/man1/trim_galore.1.dh-new debian/trim-galore/usr/share/man/man1/trim_galore.1 chmod 0644 -- debian/trim-galore/usr/share/man/man1/trim_galore.1 dh_lintian install -m0755 -d debian/trim-galore/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/trim-galore/usr/share/lintian/overrides/trim-galore dh_perl mv debian/trim-galore.substvars.new debian/trim-galore.substvars dh_link dh_strip_nondeterminism Using 1675627531 as canonical time Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/4_seqs_with_Ns.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/clock_10K_R2.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/smallRNA_100K.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/nextera_100K.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/illumina_10K_trimmed.fq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/clock_10K_R1.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/illumina_100K.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/illumina_10K.fastq.gz using File::StripNondeterminism::handlers::gzip dh_compress cd debian/trim-galore chmod a-x usr/share/doc/trim-galore/changelog usr/share/doc/trim-galore/changelog.Debian usr/share/man/man1/trim_galore.1 gzip -9nf usr/share/doc/trim-galore/changelog usr/share/doc/trim-galore/changelog.Debian usr/share/man/man1/trim_galore.1 cd '/build/trim-galore-PVSn2m/trim-galore-0.6.10' dh_fixperms find debian/trim-galore ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/trim-galore/usr/share/doc -type f -a -true -a ! -regex 'debian/trim-galore/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/trim-galore/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/trim-galore/usr/share/man debian/trim-galore/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/trim-galore -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/trim-galore/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_installdeb install -m0755 -d debian/trim-galore/DEBIAN dh_gencontrol install -m0755 -d debian/trim-galore/DEBIAN echo misc:Depends= >> debian/trim-galore.substvars echo misc:Pre-Depends= >> debian/trim-galore.substvars dpkg-gencontrol -ptrim-galore -ldebian/changelog -Tdebian/trim-galore.substvars -cdebian/control -Pdebian/trim-galore chmod 0644 -- debian/trim-galore/DEBIAN/control dh_md5sums install -m0755 -d debian/trim-galore/DEBIAN cd debian/trim-galore >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/trim-galore/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/trim-galore .. dpkg-deb: building package 'trim-galore' in '../trim-galore_0.6.10-1_all.deb'. dpkg-genbuildinfo -O../trim-galore_0.6.10-1_amd64.buildinfo dpkg-genchanges -O../trim-galore_0.6.10-1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2026-07-11T21:48:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 11 Jul 2026 21:48:29 +0000 | +------------------------------------------------------------------------------+ trim-galore_0.6.10-1_amd64.changes: ----------------------------------- Format: 1.8 Date: Sun, 05 Feb 2023 21:05:31 +0100 Source: trim-galore Binary: trim-galore Architecture: source all Version: 0.6.10-1 Distribution: perl-5.44-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: trim-galore - automate quality and adapter trimming for DNA sequencing Changes: trim-galore (0.6.10-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 9dbb580fd618000b08b69ef8750a0abceb7e269e 1169 trim-galore_0.6.10-1.dsc dd1320b1efb03f9ee57bb1ee021746a686e83ec7 26831358 trim-galore_0.6.10.orig.tar.gz f873bbd10ee072e43990e6ad12c2f597614864b4 10796 trim-galore_0.6.10-1.debian.tar.xz 1786b051bb5f038eb2928529ac86205511ba8619 17819604 trim-galore_0.6.10-1_all.deb 9899a5f0136d22a8b9496b341312aa15a36c09eb 4929 trim-galore_0.6.10-1_amd64.buildinfo Checksums-Sha256: 986afe2c30c7ae1069f48c1216772ce580ad41ed1b267458b869306f9c27865a 1169 trim-galore_0.6.10-1.dsc 3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017 26831358 trim-galore_0.6.10.orig.tar.gz 3977f48b27fe4ec7f21ae363eb22fa618d476d5b78d0826daeb94c20d2741c29 10796 trim-galore_0.6.10-1.debian.tar.xz 88e17a2653e3b3d3abab45ee14c984d109660c471264560217f2f0a253f8c072 17819604 trim-galore_0.6.10-1_all.deb e337c75473f60a82d578b71250bae45a9c953324898239595b94659c2e91b8bb 4929 trim-galore_0.6.10-1_amd64.buildinfo Files: 28024247ddb9f84e6b7c20db00a2e89a 1169 science optional trim-galore_0.6.10-1.dsc ce8ea65db052838656fd3d760c17d9f9 26831358 science optional trim-galore_0.6.10.orig.tar.gz c485f4f2566efcfb88ba74802ddc9452 10796 science optional trim-galore_0.6.10-1.debian.tar.xz 9a70e75bb971e7c8c6e42e1387c5d928 17819604 science optional trim-galore_0.6.10-1_all.deb 8b295d9dc91d3afea189acf0a440ad36 4929 science optional trim-galore_0.6.10-1_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Sat, 11 Jul 2026 21:48:29 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: trim-galore Binary: trim-galore Architecture: all source Version: 0.6.10-1 Checksums-Md5: 28024247ddb9f84e6b7c20db00a2e89a 1169 trim-galore_0.6.10-1.dsc 9a70e75bb971e7c8c6e42e1387c5d928 17819604 trim-galore_0.6.10-1_all.deb Checksums-Sha1: 9dbb580fd618000b08b69ef8750a0abceb7e269e 1169 trim-galore_0.6.10-1.dsc 1786b051bb5f038eb2928529ac86205511ba8619 17819604 trim-galore_0.6.10-1_all.deb Checksums-Sha256: 986afe2c30c7ae1069f48c1216772ce580ad41ed1b267458b869306f9c27865a 1169 trim-galore_0.6.10-1.dsc 88e17a2653e3b3d3abab45ee14c984d109660c471264560217f2f0a253f8c072 17819604 trim-galore_0.6.10-1_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 11 Jul 2026 21:48:28 +0000 Build-Path: /build/trim-galore-PVSn2m/trim-galore-0.6.10 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-3), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3), binutils (= 2.46.50.20260617-1), binutils-common (= 2.46.50.20260617-1), binutils-x86-64-linux-gnu (= 2.46.50.20260617-1), bsdextrautils (= 2.42.2-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.3.0-1), cpp-15-x86-64-linux-gnu (= 15.3.0-1), cpp-x86-64-linux-gnu (= 4:15.2.0-5+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.3), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.47-4), findutils (= 4.10.0-4), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.3.0-1), g++-15-x86-64-linux-gnu (= 15.3.0-1), g++-x86-64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.3.0-1), gcc-15-base (= 15.3.0-1), gcc-15-x86-64-linux-gnu (= 15.3.0-1), gcc-16-base (= 16.1.0-2), gcc-x86-64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 1.0-3), gettext-base (= 1.0-3), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.1.0-2), libatomic1 (= 16.1.0-2), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46.50.20260617-1), libblkid1 (= 2.42.2-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-17), libc-dev-bin (= 2.42-17), libc-gconv-modules-extra (= 2.42-17), libc6 (= 2.42-17), libc6-dev (= 2.42-17), libcap-ng0 (= 0.9.3-1+b1), libcc1-0 (= 16.1.0-2), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46.50.20260617-1), libctf0 (= 2.46.50.20260617-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-15-dev (= 15.3.0-1), libgcc-s1 (= 16.1.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.1.0-2), libgprofng0 (= 2.46.50.20260617-1), libhwasan0 (= 16.1.0-2), libisl23 (= 0.27-2), libitm1 (= 16.1.0-2), libjansson4 (= 2.15.1-1), liblsan0 (= 16.1.0-2), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.2-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.46-1+b2), libperl5.44 (= 5.44.0~rc2-1), libpipeline1 (= 1.5.8-3), libquadmath0 (= 16.1.0-2), libseccomp2 (= 2.6.1-1), libselinux1 (= 3.11-2), libsframe3 (= 2.46.50.20260617-1), libsmartcols1 (= 2.42.2-1), libssl3t64 (= 3.6.3-1), libstdc++-15-dev (= 15.3.0-1), libstdc++6 (= 16.1.0-2), libsystemd0 (= 261.1-2), libtinfo6 (= 6.6+20260608-2), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-2), libubsan1 (= 16.1.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 261.1-2), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-1), libxml2-16 (= 2.15.3+dfsg-1), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 7.1.3-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.3-1), patch (= 2.8-2), perl (= 5.44.0~rc2-1), perl-base (= 5.44.0~rc2-1), perl-modules-5.44 (= 5.44.0~rc2-1), po-debconf (= 1.0.22), rpcsvc-proto (= 1.4.4-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), util-linux (= 2.42.2-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1675627531" +------------------------------------------------------------------------------+ | Package contents Sat, 11 Jul 2026 21:48:29 +0000 | +------------------------------------------------------------------------------+ trim-galore_0.6.10-1_all.deb ---------------------------- new Debian package, version 2.0. size 17819604 bytes: control archive=1816 bytes. 2271 bytes, 39 lines control 1158 bytes, 14 lines md5sums Package: trim-galore Version: 0.6.10-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 17528 Depends: perl:any, cutadapt Recommends: fastqc Section: science Priority: optional Homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ Description: automate quality and adapter trimming for DNA sequencing Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence files (for directional, non-directional (or paired-end) sequencing). It's main features are: * For adapter trimming, Trim Galore! uses the first 13 bp of Illumina standard adapters ('AGATCGGAAGAGC') by default (suitable for both ends of paired-end libraries), but accepts other adapter sequence, too * For MspI-digested RRBS libraries, Trim Galore! performs quality and adapter trimming in two subsequent steps. This allows it to remove 2 additional bases that contain a cytosine which was artificially introduced in the end-repair step during the library preparation * For any kind of FastQ file other than MspI-digested RRBS, Trim Galore! can perform single-pass adapter- and quality trimming * The Phred quality of basecalls and the stringency for adapter removal can be specified individually * Trim Galore! can remove sequences if they become too short during the trimming process. For paired-end files Trim Galore! removes entire sequence pairs if one (or both) of the two reads became shorter than the set length cutoff. Reads of a read-pair that are longer than a given threshold but for which the partner read has become too short can optionally be written out to single-end files. This ensures that the information of a read pair is not lost entirely if only one read is of good quality * Trim Galore! can trim paired-end files by 1 additional bp from the 3' end of all reads to avoid problems with invalid alignments with Bowtie 1 * Trim Galore! accepts and produces standard or gzip compressed FastQ files * FastQC can optionally be run on the resulting output files once trimming has completed drwxr-xr-x root/root 0 2023-02-05 20:05 ./ drwxr-xr-x root/root 0 2023-02-05 20:05 ./usr/ drwxr-xr-x root/root 0 2023-02-05 20:05 ./usr/bin/ -rwxr-xr-x root/root 142076 2023-02-02 11:25 ./usr/bin/trim_galore drwxr-xr-x root/root 0 2023-02-05 20:05 ./usr/share/ drwxr-xr-x root/root 0 2023-02-05 20:05 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-02-05 20:05 ./usr/share/doc/trim-galore/ -rw-r--r-- root/root 755 2023-02-05 20:05 ./usr/share/doc/trim-galore/changelog.Debian.gz -rw-r--r-- root/root 8401 2023-02-02 11:25 ./usr/share/doc/trim-galore/changelog.gz -rw-r--r-- root/root 1121 2023-02-05 20:05 ./usr/share/doc/trim-galore/copyright drwxr-xr-x root/root 0 2023-02-05 20:05 ./usr/share/doc/trim-galore/examples/ -rw-r--r-- root/root 298 2023-02-05 20:05 ./usr/share/doc/trim-galore/examples/4_seqs_with_Ns.fastq.gz -rw-r--r-- root/root 404819 2023-02-05 20:05 ./usr/share/doc/trim-galore/examples/clock_10K_R1.fastq.gz -rw-r--r-- root/root 398786 2023-02-05 20:05 ./usr/share/doc/trim-galore/examples/clock_10K_R2.fastq.gz -rw-r--r-- root/root 9612997 2023-02-05 20:05 ./usr/share/doc/trim-galore/examples/illumina_100K.fastq.gz -rw-r--r-- root/root 983203 2023-02-05 20:05 ./usr/share/doc/trim-galore/examples/illumina_10K.fastq.gz -rw-r--r-- root/root 864765 2023-02-05 20:05 ./usr/share/doc/trim-galore/examples/illumina_10K_trimmed.fq.gz -rw-r--r-- root/root 3411557 2023-02-05 20:05 ./usr/share/doc/trim-galore/examples/nextera_100K.fastq.gz -rw-r--r-- root/root 2091317 2023-02-05 20:05 ./usr/share/doc/trim-galore/examples/smallRNA_100K.fastq.gz drwxr-xr-x root/root 0 2023-02-05 20:05 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-02-05 20:05 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 65 2023-02-05 20:05 ./usr/share/lintian/overrides/trim-galore drwxr-xr-x root/root 0 2023-02-05 20:05 ./usr/share/man/ drwxr-xr-x root/root 0 2023-02-05 20:05 ./usr/share/man/man1/ -rw-r--r-- root/root 7477 2023-02-05 20:05 ./usr/share/man/man1/trim_galore.1.gz +------------------------------------------------------------------------------+ | Post Build Sat, 11 Jul 2026 21:48:30 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 11 Jul 2026 21:48:30 +0000 | +------------------------------------------------------------------------------+ Purging /build/trim-galore-PVSn2m Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 11 Jul 2026 21:48:31 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 88164 Build-Time: 11 Distribution: perl-5.44-throwaway Host Architecture: amd64 Install-Time: 5 Job: /srv/debomatic/incoming/trim-galore_0.6.10-1.dsc Machine Architecture: amd64 Package: trim-galore Package-Time: 28 Source-Version: 0.6.10-1 Space: 88164 Status: successful Version: 0.6.10-1 -------------------------------------------------------------------------------- Finished at 2026-07-11T21:48:28Z Build needed 00:00:28, 88164k disk space