sbuild (Debian sbuild) 0.91.10 (27 June 2026) on carme.larted.org.uk +==============================================================================+ | seer 1.1.4-9 (amd64) Sun, 12 Jul 2026 01:51:39 +0000 | +==============================================================================+ Package: seer Version: 1.1.4-9 Source Version: 1.1.4-9 Distribution: perl-5.44-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sun, 12 Jul 2026 01:51:40 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup seer_1.1.4-9 perl-5.44-throwaway amd64 ------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup seer_1.1.4-9 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sun, 12 Jul 2026 01:51:40 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://deb.debian.org/debian sid InRelease Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sun, 12 Jul 2026 01:51:41 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/seer_1.1.4-9.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 12 Jul 2026 01:51:42 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/seer-RY2sjI/resolver-a9Bn8v/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/seer-RY2sjI/resolver-a9Bn8v/apt_archive ./ InRelease Get:2 copy:/build/seer-RY2sjI/resolver-a9Bn8v/apt_archive ./ Release [609 B] Ign:3 copy:/build/seer-RY2sjI/resolver-a9Bn8v/apt_archive ./ Release.gpg Get:4 copy:/build/seer-RY2sjI/resolver-a9Bn8v/apt_archive ./ Sources [705 B] Get:5 copy:/build/seer-RY2sjI/resolver-a9Bn8v/apt_archive ./ Packages [744 B] Fetched 2058 B in 0s (141 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils comerr-dev debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian krb5-multidev libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo15 libarpack2-dev libarpack2t64 libblas-dev libblas3 libboost-container1.90-dev libboost-container1.90.0 libboost-dev libboost-program-options-dev libboost-program-options1.90-dev libboost-program-options1.90.0 libboost1.90-dev libbrotli-dev libbrotli1 libbsd0 libcom-err2 libcurl4-openssl-dev libcurl4t64 libdebhelper-perl libdlib-data libdlib-dev libdlib20.0 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libelf1t64 libevent-2.1-7t64 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgbm1 libgfortran5 libgl1-mesa-dri libglvnd0 libglx-mesa0 libglx0 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgssapi-krb5-2 libgssrpc4t64 libgzstream-dev libgzstream0 libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwloc15 libidn2-dev libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3 libldap-dev libllvm21 libmagic-mgc libmagic1t64 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libopencv-core-dev libopencv-core410 libp11-kit-dev libpciaccess0 libpipeline1 libpkgconf7 libpng-dev libpng16-16t64 libpsl-dev libpsl5t64 libpython3-dev libpython3.14 libpython3.14-dev libpython3.14-minimal libpython3.14-stdlib librtmp-dev librtmp1 libsensors-config libsensors5 libsqlite3-dev libssh2-1-dev libssh2-1t64 libssl-dev libsuperlu-dev libsuperlu7 libsz2 libtasn1-6-dev libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtool libuchardet0 libunbound8 libunistring-dev libvulkan1 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext6 libxml2-16 libxshmfence1 libxxf86vm1 libz3-4 libzstd-dev m4 man-db media-types mesa-libgallium netbase nettle-dev pci.ids pkgconf pkgconf-bin po-debconf pybind11-dev sensible-utils tzdata x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc doc-base dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc libitpp-dev liblapack-doc libboost-doc libboost1.90-doc libboost-atomic1.90-dev libboost-chrono1.90-dev libboost-context1.90-dev libboost-contract1.90-dev libboost-coroutine1.90-dev libboost-date-time1.90-dev libboost-exception1.90-dev libboost-fiber1.90-dev libboost-filesystem1.90-dev libboost-graph-parallel1.90-dev libboost-graph1.90-dev libboost-iostreams1.90-dev libboost-json1.90-dev libboost-locale1.90-dev libboost-log1.90-dev libboost-math1.90-dev libboost-mpi-python1.90-dev libboost-mpi1.90-dev libboost-nowide1.90-dev libboost-numpy1.90-dev libboost-python1.90-dev libboost-random1.90-dev libboost-regex1.90-dev libboost-serialization1.90-dev libboost-stacktrace1.90-dev libboost-test1.90-dev libboost-thread1.90-dev libboost-timer1.90-dev libboost-type-erasure1.90-dev libboost-url1.90-dev libboost-wave1.90-dev libboost1.90-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc libidn-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc krb5-user libhdf5-doc libhwloc-contrib-plugins libnghttp2-doc p11-kit-doc lm-sensors sqlite3-doc libssl-doc libsuperlu-doc libtbb-doc libtool-doc gfortran | fortran95-compiler libx11-doc libxcb-doc m4-doc apparmor less www-browser libmail-box-perl pybind11-doc Recommended packages: curl | wget | lynx python3:any ca-certificates libarchive-cpio-perl libhwloc-plugins krb5-locales libpng-tools publicsuffix libtasn1-doc libltdl-dev mesa-vulkan-drivers | vulkan-icd libmail-sendmail-perl libeigen3-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils comerr-dev debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian krb5-multidev libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo15 libarpack2-dev libarpack2t64 libblas-dev libblas3 libboost-container1.90-dev libboost-container1.90.0 libboost-dev libboost-program-options-dev libboost-program-options1.90-dev libboost-program-options1.90.0 libboost1.90-dev libbrotli-dev libbrotli1 libbsd0 libcom-err2 libcurl4-openssl-dev libcurl4t64 libdebhelper-perl libdlib-data libdlib-dev libdlib20.0 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libelf1t64 libevent-2.1-7t64 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgbm1 libgfortran5 libgl1-mesa-dri libglvnd0 libglx-mesa0 libglx0 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgssapi-krb5-2 libgssrpc4t64 libgzstream-dev libgzstream0 libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwloc15 libidn2-dev libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3 libldap-dev libllvm21 libmagic-mgc libmagic1t64 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libopencv-core-dev libopencv-core410 libp11-kit-dev libpciaccess0 libpipeline1 libpkgconf7 libpng-dev libpng16-16t64 libpsl-dev libpsl5t64 libpython3-dev libpython3.14 libpython3.14-dev libpython3.14-minimal libpython3.14-stdlib librtmp-dev librtmp1 libsensors-config libsensors5 libsqlite3-dev libssh2-1-dev libssh2-1t64 libssl-dev libsuperlu-dev libsuperlu7 libsz2 libtasn1-6-dev libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtool libuchardet0 libunbound8 libunistring-dev libvulkan1 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext6 libxml2-16 libxshmfence1 libxxf86vm1 libz3-4 libzstd-dev m4 man-db media-types mesa-libgallium netbase nettle-dev pci.ids pkgconf pkgconf-bin po-debconf pybind11-dev sbuild-build-depends-main-dummy sensible-utils tzdata x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 178 newly installed, 0 to remove and 0 not upgraded. Need to get 196 MB/196 MB of archives. After this operation, 799 MB of additional disk space will be used. Get:1 copy:/build/seer-RY2sjI/resolver-a9Bn8v/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [900 B] Get:2 file:/srv/reprepro perl-5.44/main amd64 libldap-dev amd64 2.6.13+dfsg-1+b1 [308 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.8.2-1 [121 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026b-1 [260 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-3 [332 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.2-1 [100.0 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-3 [820 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.4-1 [50.9 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:30 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-3 [2658 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.3 [934 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.6+repack-2+b1 [20.6 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:41 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.22.1-3 [58.3 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.22.1-3 [40.3 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.22.1-3 [41.3 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.22.1-3 [54.1 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.22.1-3 [125 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.7-1 [22.3 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.7-1 [25.2 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.1.0-2 [877 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-6+b2 [105 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libsuperlu7 amd64 7.0.1+dfsg1-2+b2 [174 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [106 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-8 [219 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-8 [5230 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libarpack2-dev amd64 3.9.1-6+b2 [119 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.15.0-1 [67.2 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.22.1-1 [133 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.69.0-1 [89.0 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.22.1-1 [23.3 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.22.0-1 [60.7 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-4 [244 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.21.0-2 [422 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.6+repack-2+b1 [1357 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.6+repack-2+b1 [107 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.6+repack-2+b1 [63.3 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.6+repack-2+b1 [38.1 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.6+repack-2+b1 [130 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.6+repack-2+b1 [18.5 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:3.1.3-4 [356 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:3.1.3-4 [78.8 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.2.0-3 [324 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-5 [102 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.22.1-3 [14.0 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.69.0-1 [128 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.15.0-1 [94.5 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl-dev amd64 1.22.1-1 [24.2 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.22.1-1 [192 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libunistring-dev amd64 1.4.2-1 [651 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.22.0-1 [29.8 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.6-1 [60.3 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5+b2 [328 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5+b2 [641 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.13-stable-1 [183 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.25.1-1+b1 [619 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.13-1 [496 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.26.4-1 [225 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.21.0-2+b1 [98.6 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.2-1+b1 [1321 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.13-1 [1479 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.6-1 [69.7 kB] Get:101 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.6.3-1 [3025 kB] Get:102 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-4 [393 kB] Get:103 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-3+b2 [372 kB] Get:104 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.21.0-2 [550 kB] Get:105 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.6+repack-2+b1 [3196 kB] Get:106 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dev amd64 7.0.1+dfsg1-2+b2 [21.6 kB] Get:107 http://deb.debian.org/debian unstable/main amd64 libarmadillo-dev amd64 1:15.2.1+dfsg-2 [422 kB] Get:108 http://deb.debian.org/debian unstable/main amd64 libboost1.90-dev amd64 1.90.0-6 [11.3 MB] Get:109 http://deb.debian.org/debian unstable/main amd64 libboost-container1.90.0 amd64 1.90.0-6 [252 kB] Get:110 http://deb.debian.org/debian unstable/main amd64 libboost-container1.90-dev amd64 1.90.0-6 [257 kB] Get:111 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.90.0.2 [3064 B] Get:112 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.90.0 amd64 1.90.0-6 [339 kB] Get:113 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.90-dev amd64 1.90.0-6 [366 kB] Get:114 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.90.0.2 [2880 B] Get:115 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-3 [132 kB] Get:116 http://deb.debian.org/debian unstable/main amd64 libdlib-data all 20.0+dfsg-2 [63.4 MB] Get:117 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:118 http://deb.debian.org/debian unstable/main amd64 libdlib20.0 amd64 20.0+dfsg-2+b1 [3857 kB] Get:119 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-3+b1 [54.3 kB] Get:120 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:121 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:122 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:123 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:124 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:125 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.134-3 [7860 B] Get:126 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.134-3 [38.5 kB] Get:127 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.134-3 [23.3 kB] Get:128 http://deb.debian.org/debian unstable/main amd64 pci.ids all 0.0~2026.07.06-1 [285 kB] Get:129 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.19-2 [18.5 kB] Get:130 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.134-3 [64.2 kB] Get:131 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:132 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1.1 [8644 kB] Get:133 http://deb.debian.org/debian unstable/main amd64 libllvm21 amd64 1:21.1.8-7+b4 [28.2 MB] Get:134 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:135 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.2-2+b2 [37.2 kB] Get:136 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.13-1 [250 kB] Get:137 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b2 [107 kB] Get:138 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b2 [106 kB] Get:139 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b2 [117 kB] Get:140 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b2 [109 kB] Get:141 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b2 [109 kB] Get:142 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3.3-1+b2 [11.2 kB] Get:143 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 26.1.4-1 [11.2 MB] Get:144 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 26.1.4-1 [54.8 kB] Get:145 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.4.341.0-1 [141 kB] Get:146 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 26.1.4-1 [44.5 kB] Get:147 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b2 [122 kB] Get:148 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:149 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:150 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-2+b1 [20.2 kB] Get:151 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 26.1.4-1 [125 kB] Get:152 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-3+b1 [34.9 kB] Get:153 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.14.0-2 [166 kB] Get:154 http://deb.debian.org/debian unstable/main amd64 libtbbbind-2-5 amd64 2022.3.0-2 [14.6 kB] Get:155 http://deb.debian.org/debian unstable/main amd64 libtbbmalloc2 amd64 2022.3.0-2 [51.0 kB] Get:156 http://deb.debian.org/debian unstable/main amd64 libtbb12 amd64 2022.3.0-2 [97.8 kB] Get:157 http://deb.debian.org/debian unstable/main amd64 libopencv-core410 amd64 4.10.0+dfsg-7+b2 [1249 kB] Get:158 http://deb.debian.org/debian unstable/main amd64 libtbb-dev amd64 2022.3.0-2 [204 kB] Get:159 http://deb.debian.org/debian unstable/main amd64 libopencv-core-dev amd64 4.10.0+dfsg-7+b2 [2099 kB] Get:160 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.58-1 [372 kB] Get:161 http://deb.debian.org/debian unstable/main amd64 libsqlite3-dev amd64 3.53.3-1 [1165 kB] Get:162 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.12.1-1 [23.9 kB] Get:163 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2025.1-1 [605 kB] Get:164 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1+b2 [23.9 kB] Get:165 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-2+b1 [44.0 kB] Get:166 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB] Get:167 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b2 [181 kB] Get:168 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.13-1 [903 kB] Get:169 http://deb.debian.org/debian unstable/main amd64 libpython3.14-minimal amd64 3.14.6-1 [896 kB] Get:170 http://deb.debian.org/debian unstable/main amd64 libpython3.14-stdlib amd64 3.14.6-1 [2278 kB] Get:171 http://deb.debian.org/debian unstable/main amd64 libpython3.14 amd64 3.14.6-1 [2376 kB] Get:172 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.8.2-1 [177 kB] Get:173 http://deb.debian.org/debian unstable/main amd64 libpython3.14-dev amd64 3.14.6-1 [5447 kB] Get:174 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.14.6-1 [8340 B] Get:175 http://deb.debian.org/debian unstable/main amd64 pybind11-dev all 3.0.1-3 [240 kB] Get:176 http://deb.debian.org/debian unstable/main amd64 libdlib-dev amd64 20.0+dfsg-2+b1 [2231 kB] Get:177 http://deb.debian.org/debian unstable/main amd64 libgzstream0 amd64 1.5+git20171107.9a20658-3+b2 [7336 B] Get:178 http://deb.debian.org/debian unstable/main amd64 libgzstream-dev amd64 1.5+git20171107.9a20658-3+b2 [7664 B] Preconfiguring packages ... Fetched 196 MB in 1s (160 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 15696 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.8.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.2-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../001-tzdata_2026b-1_all.deb ... Unpacking tzdata (2026b-1) ... Selecting previously unselected package netbase. Preparing to unpack .../002-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.47-4_amd64.deb ... 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Setting up libaec0:amd64 (1.1.7-1) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up tzdata (2026b-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Jul 12 01:52:00 UTC 2026. Universal Time is now: Sun Jul 12 01:52:00 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b2) ... Setting up xtrans-dev (1.6.0-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up libz3-4:amd64 (4.13.3-1.1) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.25.1-1+b1) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5+b2) ... Setting up libexpat1-dev:amd64 (2.8.2-1) ... Setting up libjpeg62-turbo:amd64 (1:3.1.3-4) ... Setting up libgnutls-dane0t64:amd64 (3.8.13-1) ... 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Processing triggers for libc-bin (2.42-17) ... +------------------------------------------------------------------------------+ | Check architectures Sun, 12 Jul 2026 01:52:01 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Sun, 12 Jul 2026 01:52:01 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.46.50.20260617-1 dpkg-dev_1.23.7 g++-15_15.3.0-1 gcc-15_15.3.0-1 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 linux-libc-dev_7.1.3-1 Package versions: apt_3.3.1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.46.50.20260617-1 binutils-common_2.46.50.20260617-1 binutils-x86-64-linux-gnu_2.46.50.20260617-1 bsdextrautils_2.42.2-1 build-essential_12.12 bzip2_1.0.8-6+b2 comerr-dev_2.1-1.47.4-1 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.3.0-1 cpp-15-x86-64-linux-gnu_15.3.0-1 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-7 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.47-4 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.3.0-1 g++-15-x86-64-linux-gnu_15.3.0-1 g++-x86-64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.3.0-1 gcc-15-base_15.3.0-1 gcc-15-x86-64-linux-gnu_15.3.0-1 gcc-16-base_16.1.0-2 gcc-x86-64-linux-gnu_4:15.2.0-5+b1 gettext_1.0-3 gettext-base_1.0-3 gnupg_2.4.9-7 gnupg-l10n_2.4.9-7 gpg_2.4.9-7 gpg-agent_2.4.9-7 gpgconf_2.4.9-7 gpgsm_2.4.9-7 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 hdf5-helpers_1.14.6+repack-2+b1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.22.1-3 libacl1_2.4.0-1 libaec-dev_1.1.7-1 libaec0_1.1.7-1 libapt-pkg7.0_3.3.1 libarchive-zip-perl_1.68-1 libarmadillo-dev_1:15.2.1+dfsg-2 libarmadillo15_1:15.2.1+dfsg-2 libarpack2-dev_3.9.1-6+b2 libarpack2t64_3.9.1-6+b2 libasan8_16.1.0-2 libassuan9_3.0.2-2+b2 libatomic1_16.1.0-2 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46.50.20260617-1 libblas-dev_3.12.1-8 libblas3_3.12.1-8 libblkid1_2.42.2-1 libboost-container1.90-dev_1.90.0-6 libboost-container1.90.0_1.90.0-6 libboost-dev_1.90.0.2 libboost-program-options-dev_1.90.0.2 libboost-program-options1.90-dev_1.90.0-6 libboost-program-options1.90.0_1.90.0-6 libboost1.90-dev_1.90.0-6 libbrotli-dev_1.2.0-3 libbrotli1_1.2.0-3 libbsd0_0.12.2-3 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-17 libc-dev-bin_2.42-17 libc-gconv-modules-extra_2.42-17 libc6_2.42-17 libc6-dev_2.42-17 libcap-ng0_0.9.3-1+b1 libcc1-0_16.1.0-2 libcom-err2_1.47.4-1 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46.50.20260617-1 libctf0_2.46.50.20260617-1 libcurl4-openssl-dev_8.21.0-2 libcurl4t64_8.21.0-2 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdlib-data_20.0+dfsg-2 libdlib-dev_20.0+dfsg-2+b1 libdlib20.0_20.0+dfsg-2+b1 libdpkg-perl_1.23.7 libdrm-amdgpu1_2.4.134-3 libdrm-common_2.4.134-3 libdrm-intel1_2.4.134-3 libdrm2_2.4.134-3 libeatmydata1_131-2+b2 libedit2_3.1-20260512-1 libelf1t64_0.195-1 libevent-2.1-7t64_2.1.13-stable-1 libexpat1_2.8.2-1 libexpat1-dev_2.8.2-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.1-1 libgbm1_26.1.4-1 libgcc-15-dev_15.3.0-1 libgcc-s1_16.1.0-2 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgfortran5_16.1.0-2 libgl1-mesa-dri_26.1.4-1 libglvnd0_1.7.0-3+b1 libglx-mesa0_26.1.4-1 libglx0_1.7.0-3+b1 libgmp-dev_2:6.3.0+dfsg-5+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgmpxx4ldbl_2:6.3.0+dfsg-5+b2 libgnutls-dane0t64_3.8.13-1 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libldap-dev_2.6.13+dfsg-1+b1 libldap2_2.6.13+dfsg-1+b1 libllvm21_1:21.1.8-7+b4 liblsan0_16.1.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnghttp2-14_1.69.0-1 libnghttp2-dev_1.69.0-1 libnghttp3-9_1.15.0-1 libnghttp3-dev_1.15.0-1 libngtcp2-16_1.22.1-1 libngtcp2-crypto-ossl-dev_1.22.1-1 libngtcp2-crypto-ossl0_1.22.1-1 libngtcp2-dev_1.22.1-1 libnpth0t64_1.8-3+b2 libopencv-core-dev_4.10.0+dfsg-7+b2 libopencv-core410_4.10.0+dfsg-7+b2 libp11-kit-dev_0.26.4-1 libp11-kit0_0.26.4-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpciaccess0_0.19-2 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-8 libperl5.44_5.44.0~rc2-1 libpipeline1_1.5.8-3 libpkgconf7_2.5.1-4 libpng-dev_1.6.58-1 libpng16-16t64_1.6.58-1 libpsl-dev_0.22.0-1 libpsl5t64_0.22.0-1 libpython3-dev_3.14.6-1 libpython3.14_3.14.6-1 libpython3.14-dev_3.14.6-1 libpython3.14-minimal_3.14.6-1 libpython3.14-stdlib_3.14.6-1 libquadmath0_16.1.0-2 libreadline8t64_8.3-4 librtmp-dev_2.6-1 librtmp1_2.6-1 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.1-1 libselinux1_3.11-2 libsensors-config_1:3.6.2-2 libsensors5_1:3.6.2-2+b2 libsframe3_2.46.50.20260617-1 libsmartcols1_2.42.2-1 libsqlite3-0_3.53.3-1 libsqlite3-dev_3.53.3-1 libssh2-1-dev_1.11.1-4 libssh2-1t64_1.11.1-4 libssl-dev_3.6.3-1 libssl3t64_3.6.3-1 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 libsuperlu-dev_7.0.1+dfsg1-2+b2 libsuperlu7_7.0.1+dfsg1-2+b2 libsystemd-shared_261.1-2 libsystemd0_261.1-2 libsz2_1.1.7-1 libtasn1-6_4.21.0-2+b1 libtasn1-6-dev_4.21.0-2+b1 libtbb-dev_2022.3.0-2 libtbb12_2022.3.0-2 libtbbbind-2-5_2022.3.0-2 libtbbmalloc2_2022.3.0-2 libtinfo6_6.6+20260608-2 libtool_2.5.4-11 libtsan2_16.1.0-2 libtss2-esys-3.0.2-0t64_4.1.3-6 libtss2-mu-4.0.1-0t64_4.1.3-6 libtss2-rc0t64_4.1.3-6 libtss2-sys1t64_4.1.3-6 libtss2-tcti-cmd0t64_4.1.3-6 libtss2-tcti-device0t64_4.1.3-6 libtss2-tcti-mssim0t64_4.1.3-6 libtss2-tcti-swtpm0t64_4.1.3-6 libubsan1_16.1.0-2 libuchardet0_0.0.8-2+b2 libudev1_261.1-2 libunbound8_1.25.1-1+b1 libunistring-dev_1.4.2-1 libunistring5_1.4.2-1 libuuid1_2.42.2-1 libvulkan1_1.4.341.0-1 libx11-6_2:1.8.13-1 libx11-data_2:1.8.13-1 libx11-dev_2:1.8.13-1 libx11-xcb1_2:1.8.13-1 libxau-dev_1:1.0.11-1+b2 libxau6_1:1.0.11-1+b2 libxcb-dri3-0_1.17.0-2+b2 libxcb-glx0_1.17.0-2+b2 libxcb-present0_1.17.0-2+b2 libxcb-randr0_1.17.0-2+b2 libxcb-shm0_1.17.0-2+b2 libxcb-sync1_1.17.0-2+b2 libxcb-xfixes0_1.17.0-2+b2 libxcb1_1.17.0-2+b2 libxcb1-dev_1.17.0-2+b2 libxdmcp-dev_1:1.1.5-2+b1 libxdmcp6_1:1.1.5-2+b1 libxext6_2:1.3.4-1+b4 libxml2-16_2.15.3+dfsg-1 libxshmfence1_1.3.3-1+b2 libxxf86vm1_1:1.1.4-2+b1 libxxhash0_0.8.3-2+b2 libz3-4_4.13.3-1.1 libzstd-dev_1.5.7+dfsg-3+b2 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.1.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 media-types_14.0.0 mesa-libgallium_26.1.4-1 mount_2.42.2-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 netbase_6.5 nettle-dev_3.10.2-1+b1 openssl-provider-legacy_3.6.3-1 patch_2.8-2 pci.ids_0.0~2026.07.06-1 perl_5.44.0~rc2-1 perl-base_5.44.0~rc2-1 perl-modules-5.40_5.40.1-8 perl-modules-5.44_5.44.0~rc2-1 pinentry-curses_1.3.3-2 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 pybind11-dev_3.0.1-3 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.4.0-1 systemd_261.1-2 systemd-tpm_261.1-2 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 tpm-udev_4.1.3-6 tzdata_2026b-1 util-linux_2.42.2-1 x11proto-dev_2025.1-1 xorg-sgml-doctools_1:1.12.1-1 xtrans-dev_1.6.0-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sun, 12 Jul 2026 01:52:01 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seer Binary: seer Architecture: any Version: 1.1.4-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/johnlees/seer Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/med-team/seer Vcs-Git: https://salsa.debian.org/med-team/seer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev Package-List: seer deb science optional arch=any Checksums-Sha1: 01aa93df82b6e563f5e06ae47592ae0d98dce2da 972155 seer_1.1.4.orig.tar.gz 9505d32a8f95a010a9263be66a4d581638eb9354 9536 seer_1.1.4-9.debian.tar.xz Checksums-Sha256: 96e55b9fe2cde089ff05bbcd55088832e90f44a968a81a8dca9f9cffa6faa9c1 972155 seer_1.1.4.orig.tar.gz 7a801bdb49a82a3bcfe4b7e5944d9391b2bf73a7892069528d6d59656081b307 9536 seer_1.1.4-9.debian.tar.xz Files: e4b331eaf17819aabc545b032148d8c2 972155 seer_1.1.4.orig.tar.gz f7fd8bba46a2d5a3a603abd6c929f545 9536 seer_1.1.4-9.debian.tar.xz Dgit: 70899ce087a860d68290d87c2e777dd663c046a1 debian archive/debian/1.1.4-9 https://git.dgit.debian.org/seer -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmnBomYUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoE7BAAhDlD2wcV5T+KabfG+nMtKaRrt4wd k9gAE81wwObsdDd4BGE3nSXrnnSCvNNILy+PaK7gLYW+tJKDSGCaZGI8fMl8G2iN DHLxg7M6DUCKuxs7iT6TOnDtOIuwiq60t9ZFcoa5JzxULBeX5ypOqL3AxM4Z+xec 3bF1fIOoUhadPDzHsfrUNjCxk8A7ULN6MU5LNVK1GAFFfr5DprAHPKk/aE5PKm// g7dhczEBEe2XMpnvgHDbZWh5xtsKSm+EXF557ZW/0JhVNWgSHS5Tav1GYKD+cirT hFMwm3Qx//deKe0m2QCffCSQQB5AsYgeyJQbQ1KTrw/bDJzXfONo5J5k00EGevbP xRLOqbvbJ6NRJk06KpQ91auQyNeysYw2NuifxeSdk5u90Jre7cl8vgK8yUZ5PKRK k2IPs55KiNYhf+CoHzzZq/lKZ/gmU+HiEztMIqpGIGWBy16hrbyTJFItygm84/ms 7j2MPUNSw7hdlnqKXmP7m+HUP6VOUbIp2Y8XGr6MISmt4Z3soHKpkQdPmm54Gj6m CzXRnBer1U306a2mR8B6bCtSClv4kpjdBR4R09DxCIz8qgPmE5aQzGc7z9faHuMh 20EDAOir8U3zGJqzOYnLew2Q7X64AanTHpSl054T8ELWtPlBkrdf6VkDVvK+cf7A mcyZKan0um9k+aI= =KlNY -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./seer_1.1.4-9.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./seer_1.1.4-9.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting seer in /build/seer-RY2sjI/seer-1.1.4 dpkg-source: info: unpacking seer_1.1.4.orig.tar.gz dpkg-source: info: unpacking seer_1.1.4-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_lib_location.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying gcc11.patch dpkg-source: info: applying typos.patch dpkg-source: info: applying cpp14.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Sun, 12 Jul 2026 01:52:01 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network seer_1.1.4-9 perl-5.44-throwaway amd64 ------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network seer_1.1.4-9 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/seer-RY2sjI/seer-1.1.4 SCHROOT_ALIAS_NAME=perl-5.44-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.44-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.44-amd64-debomatic-40aaf09d-fb71-4d4e-a608-d3f09213ade6 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package seer dpkg-buildpackage: info: source version 1.1.4-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j2 clean make[1]: Entering directory '/build/seer-RY2sjI/seer-1.1.4' cd src && make clean make[2]: Entering directory '/build/seer-RY2sjI/seer-1.1.4/src' rm -f *.o ~* seer kmds map_back combineKmers filter_seer make[2]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4/src' cd test && make clean make[2]: Entering directory '/build/seer-RY2sjI/seer-1.1.4/test' rm -f *.o ~* tests_passed make[2]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4/test' make[1]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building seer using existing ../seer_1.1.4.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building seer in ../seer_1.1.4-9.debian.tar.xz dpkg-source: info: building seer in ../seer_1.1.4-9.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/seer-RY2sjI/seer-1.1.4' dh_auto_build -- LDFLAGS+=-L/usr/lib/x86_64-linux-gnu/hdf5/serial make -j2 INSTALL="install --strip-program=true" LDFLAGS\+=-L/usr/lib/x86_64-linux-gnu/hdf5/serial make[2]: Entering directory '/build/seer-RY2sjI/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/seer-RY2sjI/seer-1.1.4/src' g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o sample.o sample.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o significant_kmer.o significant_kmer.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmer.o kmer.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o covar.o covar.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCommon.o seerCommon.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerErr.o seerErr.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerIO.o seerIO.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBasicFilter.o seerBasicFilter.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerMain.o seerMain.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCmdLine.o seerCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerStats.o seerStats.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerContinuousAssoc.o seerContinuousAssoc.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBinaryAssoc.o seerBinaryAssoc.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o logitFunction.o logitFunction.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o linearFunction.o linearFunction.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsMain.o kmdsMain.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsStruct.o kmdsStruct.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsCmdLine.o kmdsCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o fasta.o fasta.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapMain.o mapMain.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapCmdLine.o mapCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineInit.o combineInit.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineCmdLine.o combineCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineKmers.o combineKmers.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filter_seer.o filter_seer.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filterCmdLine.o filterCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o seerMain.o seerCmdLine.o seerStats.o seerContinuousAssoc.o seerBinaryAssoc.o logitFunction.o linearFunction.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o seer g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o kmdsMain.o kmdsStruct.o kmdsCmdLine.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o kmds g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial fasta.o significant_kmer.o mapMain.o mapCmdLine.o -lboost_program_options -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o map_back g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial combineInit.o combineCmdLine.o combineKmers.o -lgzstream -lz -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o combineKmers g++ -g -O2 -ffile-prefix-map=/build/seer-RY2sjI/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial significant_kmer.o filter_seer.o filterCmdLine.o -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o filter_seer make[3]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4/src' make[2]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4' make[1]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/seer-RY2sjI/seer-1.1.4' if dh_auto_test ; then echo Test passed ; else echo '****************************** TEST FAILED. Please contact upstream *******************************' ; fi make -j2 test make[2]: Entering directory '/build/seer-RY2sjI/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/seer-RY2sjI/seer-1.1.4/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4/src' cd test && make test make[3]: Entering directory '/build/seer-RY2sjI/seer-1.1.4/test' ./run_test.pl && touch tests_passed PASSED test 1, basic filters PASSED test 2, binary phenotype assocation PASSED test 3, print output PASSED test 4, continuous phenotype assocation PASSED test 5, assocation with population structure PASSED test 6, assocation with covariates PASSED test 7, filter output PASSED test 8, map k-mers make[3]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4/test' make[2]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4' Test passed rm -fv /build/seer-RY2sjI/seer-1.1.4/test/tests_passed removed '/build/seer-RY2sjI/seer-1.1.4/test/tests_passed' make[1]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/seer-RY2sjI/seer-1.1.4' dh_auto_install -- PREFIX=/build/seer-RY2sjI/seer-1.1.4/debian/seer/usr make -j2 install DESTDIR=/build/seer-RY2sjI/seer-1.1.4/debian/seer AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" PREFIX=/build/seer-RY2sjI/seer-1.1.4/debian/seer/usr make[2]: Entering directory '/build/seer-RY2sjI/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/seer-RY2sjI/seer-1.1.4/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4/src' cd src && make install make[3]: Entering directory '/build/seer-RY2sjI/seer-1.1.4/src' install -d /build/seer-RY2sjI/seer-1.1.4/debian/seer/usr/bin install seer kmds map_back combineKmers filter_seer /build/seer-RY2sjI/seer-1.1.4/debian/seer/usr/bin make[3]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4/src' make[2]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4' for pl in scripts/*.pl ; do \ plbase=`basename ${pl} .pl` ; \ sed "s+Usage: ./${plbase}.pl+Usage: ${plbase}+" ${pl} > /build/seer-RY2sjI/seer-1.1.4/debian/seer/usr/bin/${plbase} ; \ done # Fix broken usage hint: sed -i "s+Usage: ./hits_to_matrix.pl+Usage: reformat_output+" /build/seer-RY2sjI/seer-1.1.4/debian/seer/usr/bin/reformat_output make[1]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/seer-RY2sjI/seer-1.1.4' dh_fixperms find debian -name Makefile -exec chmod -x \{\} \; find debian -name "*.fa" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/seer-RY2sjI/seer-1.1.4' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/combineKmers was not linked against libz.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seer-dbgsym' in '../seer-dbgsym_1.1.4-9_amd64.deb'. dpkg-deb: building package 'seer' in '../seer_1.1.4-9_amd64.deb'. dpkg-genbuildinfo -O../seer_1.1.4-9_amd64.buildinfo dpkg-genchanges -O../seer_1.1.4-9_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2026-07-12T01:53:46Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 12 Jul 2026 01:53:46 +0000 | +------------------------------------------------------------------------------+ seer_1.1.4-9_amd64.changes: --------------------------- Format: 1.8 Date: Mon, 23 Mar 2026 21:18:01 +0100 Source: seer Binary: seer seer-dbgsym Architecture: source amd64 Version: 1.1.4-9 Distribution: perl-5.44-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: seer - genomic sequence element (kmer) enrichment analysis Closes: 1125727 Changes: seer (1.1.4-9) unstable; urgency=medium . [ Chris Lamb ] * d/rules: clean up tests_passed file. (Closes: #1125727) . [ Étienne Mollier ] * d/watch: convert to Github uscan template v5. * d/control: drop redundant Priority: optional. * d/control: drop redundant Rules-Requires-Root: no. * d/control: declare compliance to standards version 4.7.3. * d/patches/*: normalize Last-Update time stamp. 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science optional seer_1.1.4-9.debian.tar.xz 71b857f9cf9049bbf5f5864d3065450d 9122912 debug optional seer-dbgsym_1.1.4-9_amd64.deb 1da7ac725df848f053f873ab7d59bed8 10185 science optional seer_1.1.4-9_amd64.buildinfo 578d2e40459be6394b2fb181193a4393 1233508 science optional seer_1.1.4-9_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Sun, 12 Jul 2026 01:53:46 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: seer Binary: seer seer-dbgsym Architecture: amd64 source Version: 1.1.4-9 Checksums-Md5: f2c3a8e0fa617ca87a356ebd8905d5b0 1150 seer_1.1.4-9.dsc 71b857f9cf9049bbf5f5864d3065450d 9122912 seer-dbgsym_1.1.4-9_amd64.deb 578d2e40459be6394b2fb181193a4393 1233508 seer_1.1.4-9_amd64.deb Checksums-Sha1: df35ff0a08233c51d6dc74c63810c8dd33aa4672 1150 seer_1.1.4-9.dsc 89c9abf961c9ca9e2bc303dd13b6a8dbfd7a8d20 9122912 seer-dbgsym_1.1.4-9_amd64.deb 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4:15.2.0-5+b1), cpp-15 (= 15.3.0-1), cpp-15-x86-64-linux-gnu (= 15.3.0-1), cpp-x86-64-linux-gnu (= 4:15.2.0-5+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.3), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.47-4), findutils (= 4.10.0-4), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.3.0-1), g++-15-x86-64-linux-gnu (= 15.3.0-1), g++-x86-64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.3.0-1), gcc-15-base (= 15.3.0-1), gcc-15-x86-64-linux-gnu (= 15.3.0-1), gcc-16-base (= 16.1.0-2), gcc-x86-64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 1.0-3), gettext-base (= 1.0-3), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.13-1), hdf5-helpers (= 1.14.6+repack-2+b1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.22.1-3), libacl1 (= 2.4.0-1), libaec-dev (= 1.1.7-1), libaec0 (= 1.1.7-1), libarchive-zip-perl (= 1.68-1), libarmadillo-dev (= 1:15.2.1+dfsg-2), libarmadillo15 (= 1:15.2.1+dfsg-2), libarpack2-dev (= 3.9.1-6+b2), libarpack2t64 (= 3.9.1-6+b2), libasan8 (= 16.1.0-2), libatomic1 (= 16.1.0-2), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46.50.20260617-1), libblas-dev (= 3.12.1-8), libblas3 (= 3.12.1-8), libblkid1 (= 2.42.2-1), libboost-container1.90-dev (= 1.90.0-6), libboost-container1.90.0 (= 1.90.0-6), libboost-dev (= 1.90.0.2), libboost-program-options-dev (= 1.90.0.2), libboost-program-options1.90-dev (= 1.90.0-6), libboost-program-options1.90.0 (= 1.90.0-6), libboost1.90-dev (= 1.90.0-6), libbrotli-dev (= 1.2.0-3), libbrotli1 (= 1.2.0-3), libbsd0 (= 0.12.2-3), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-17), libc-dev-bin (= 2.42-17), libc-gconv-modules-extra (= 2.42-17), libc6 (= 2.42-17), libc6-dev (= 2.42-17), libcap-ng0 (= 0.9.3-1+b1), libcc1-0 (= 16.1.0-2), libcom-err2 (= 1.47.4-1), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46.50.20260617-1), libctf0 (= 2.46.50.20260617-1), libcurl4-openssl-dev (= 8.21.0-2), libcurl4t64 (= 8.21.0-2), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdlib-data (= 20.0+dfsg-2), libdlib-dev (= 20.0+dfsg-2+b1), libdlib20.0 (= 20.0+dfsg-2+b1), libdpkg-perl (= 1.23.7), libdrm-amdgpu1 (= 2.4.134-3), libdrm-common (= 2.4.134-3), libdrm-intel1 (= 2.4.134-3), libdrm2 (= 2.4.134-3), libedit2 (= 3.1-20260512-1), libelf1t64 (= 0.195-1), libevent-2.1-7t64 (= 2.1.13-stable-1), libexpat1 (= 2.8.2-1), libexpat1-dev (= 2.8.2-1), libffi8 (= 3.5.2-4), libfile-stripnondeterminism-perl (= 1.15.1-1), libgbm1 (= 26.1.4-1), libgcc-15-dev (= 15.3.0-1), libgcc-s1 (= 16.1.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgfortran5 (= 16.1.0-2), libgl1-mesa-dri (= 26.1.4-1), libglvnd0 (= 1.7.0-3+b1), libglx-mesa0 (= 26.1.4-1), libglx0 (= 1.7.0-3+b1), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.1.0-2), libgprofng0 (= 2.46.50.20260617-1), libgssapi-krb5-2 (= 1.22.1-3), libgssrpc4t64 (= 1.22.1-3), libgzstream-dev (= 1.5+git20171107.9a20658-3+b2), libgzstream0 (= 1.5+git20171107.9a20658-3+b2), libhdf5-310 (= 1.14.6+repack-2+b1), libhdf5-cpp-310 (= 1.14.6+repack-2+b1), libhdf5-dev (= 1.14.6+repack-2+b1), libhdf5-fortran-310 (= 1.14.6+repack-2+b1), libhdf5-hl-310 (= 1.14.6+repack-2+b1), libhdf5-hl-cpp-310 (= 1.14.6+repack-2+b1), libhdf5-hl-fortran-310 (= 1.14.6+repack-2+b1), libhogweed6t64 (= 3.10.2-1+b1), libhwasan0 (= 16.1.0-2), libhwloc15 (= 2.14.0-2), libidn2-0 (= 2.3.8-5), libidn2-dev (= 2.3.8-5), libisl23 (= 0.27-2), libitm1 (= 16.1.0-2), libjansson4 (= 2.15.1-1), libjpeg-dev (= 1:3.1.3-4), libjpeg62-turbo (= 1:3.1.3-4), libjpeg62-turbo-dev (= 1:3.1.3-4), libk5crypto3 (= 1.22.1-3), libkadm5clnt-mit12 (= 1.22.1-3), libkadm5srv-mit12 (= 1.22.1-3), libkdb5-10t64 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5-dev (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), liblapack-dev (= 3.12.1-8), liblapack3 (= 3.12.1-8), libldap-dev (= 2.6.13+dfsg-1+b1), libldap2 (= 2.6.13+dfsg-1+b1), libllvm21 (= 1:21.1.8-7+b4), liblsan0 (= 16.1.0-2), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.2-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncursesw6 (= 6.6+20260608-2), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.69.0-1), libnghttp2-dev (= 1.69.0-1), libnghttp3-9 (= 1.15.0-1), libnghttp3-dev (= 1.15.0-1), libngtcp2-16 (= 1.22.1-1), libngtcp2-crypto-ossl-dev (= 1.22.1-1), libngtcp2-crypto-ossl0 (= 1.22.1-1), libngtcp2-dev (= 1.22.1-1), libopencv-core-dev (= 4.10.0+dfsg-7+b2), libopencv-core410 (= 4.10.0+dfsg-7+b2), libp11-kit-dev (= 0.26.4-1), libp11-kit0 (= 0.26.4-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpciaccess0 (= 0.19-2), libpcre2-8-0 (= 10.46-1+b2), libperl5.44 (= 5.44.0~rc2-1), libpipeline1 (= 1.5.8-3), libpkgconf7 (= 2.5.1-4), libpng-dev (= 1.6.58-1), libpng16-16t64 (= 1.6.58-1), libpsl-dev (= 0.22.0-1), libpsl5t64 (= 0.22.0-1), libpython3-dev (= 3.14.6-1), libpython3.14 (= 3.14.6-1), libpython3.14-dev (= 3.14.6-1), libpython3.14-minimal (= 3.14.6-1), libpython3.14-stdlib (= 3.14.6-1), libquadmath0 (= 16.1.0-2), libreadline8t64 (= 8.3-4), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libseccomp2 (= 2.6.1-1), libselinux1 (= 3.11-2), libsensors-config (= 1:3.6.2-2), libsensors5 (= 1:3.6.2-2+b2), libsframe3 (= 2.46.50.20260617-1), libsmartcols1 (= 2.42.2-1), libsqlite3-0 (= 3.53.3-1), libsqlite3-dev (= 3.53.3-1), libssh2-1-dev (= 1.11.1-4), libssh2-1t64 (= 1.11.1-4), libssl-dev (= 3.6.3-1), libssl3t64 (= 3.6.3-1), libstdc++-15-dev (= 15.3.0-1), libstdc++6 (= 16.1.0-2), libsuperlu-dev (= 7.0.1+dfsg1-2+b2), libsuperlu7 (= 7.0.1+dfsg1-2+b2), libsystemd0 (= 261.1-2), libsz2 (= 1.1.7-1), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtbb-dev (= 2022.3.0-2), libtbb12 (= 2022.3.0-2), libtbbbind-2-5 (= 2022.3.0-2), libtbbmalloc2 (= 2022.3.0-2), libtinfo6 (= 6.6+20260608-2), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-2), libubsan1 (= 16.1.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 261.1-2), libunbound8 (= 1.25.1-1+b1), libunistring-dev (= 1.4.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-1), libvulkan1 (= 1.4.341.0-1), libx11-6 (= 2:1.8.13-1), libx11-data (= 2:1.8.13-1), libx11-dev (= 2:1.8.13-1), libx11-xcb1 (= 2:1.8.13-1), libxau-dev (= 1:1.0.11-1+b2), libxau6 (= 1:1.0.11-1+b2), libxcb-dri3-0 (= 1.17.0-2+b2), libxcb-glx0 (= 1.17.0-2+b2), libxcb-present0 (= 1.17.0-2+b2), libxcb-randr0 (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb-sync1 (= 1.17.0-2+b2), libxcb-xfixes0 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxcb1-dev (= 1.17.0-2+b2), libxdmcp-dev (= 1:1.1.5-2+b1), libxdmcp6 (= 1:1.1.5-2+b1), libxext6 (= 2:1.3.4-1+b4), libxml2-16 (= 2.15.3+dfsg-1), libxshmfence1 (= 1.3.3-1+b2), libxxf86vm1 (= 1:1.1.4-2+b1), libz3-4 (= 4.13.3-1.1), libzstd-dev (= 1.5.7+dfsg-3+b2), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 7.1.3-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), mesa-libgallium (= 26.1.4-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), netbase (= 6.5), nettle-dev (= 3.10.2-1+b1), openssl-provider-legacy (= 3.6.3-1), patch (= 2.8-2), pci.ids (= 0.0~2026.07.06-1), perl (= 5.44.0~rc2-1), perl-base (= 5.44.0~rc2-1), perl-modules-5.44 (= 5.44.0~rc2-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), pybind11-dev (= 3.0.1-3), readline-common (= 8.3-4), rpcsvc-proto (= 1.4.4-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), tzdata (= 2026b-1), util-linux (= 2.42.2-1), x11proto-dev (= 2025.1-1), xorg-sgml-doctools (= 1:1.12.1-1), xtrans-dev (= 1.6.0-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1774297081" +------------------------------------------------------------------------------+ | Package contents Sun, 12 Jul 2026 01:53:46 +0000 | +------------------------------------------------------------------------------+ seer-dbgsym_1.1.4-9_amd64.deb ----------------------------- new Debian package, version 2.0. size 9122912 bytes: control archive=804 bytes. 523 bytes, 12 lines control 611 bytes, 6 lines md5sums Package: seer-dbgsym Source: seer Version: 1.1.4-9 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 9555 Depends: seer (= 1.1.4-9) Section: debug Priority: optional Description: debug symbols for seer Build-Ids: 3b2b5833fee263568e3480e2fa1904806a7dc316 40c8580127bc835ecf850bf9669a9189c8c714aa aefb7a0453dfdaad399f553677679334f60c2b69 c2f49a91a87cb39ac17223e6e3cc0f2561e53b29 d97b550ee4d43c2e62201da711cbb0bb2093924f drwxr-xr-x root/root 0 2026-03-23 20:18 ./ drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/ drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/lib/ drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/lib/debug/.build-id/3b/ -rw-r--r-- root/root 3741288 2026-03-23 20:18 ./usr/lib/debug/.build-id/3b/2b5833fee263568e3480e2fa1904806a7dc316.debug drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/lib/debug/.build-id/40/ -rw-r--r-- root/root 3000352 2026-03-23 20:18 ./usr/lib/debug/.build-id/40/c8580127bc835ecf850bf9669a9189c8c714aa.debug drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/lib/debug/.build-id/ae/ -rw-r--r-- root/root 970232 2026-03-23 20:18 ./usr/lib/debug/.build-id/ae/fb7a0453dfdaad399f553677679334f60c2b69.debug drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/lib/debug/.build-id/c2/ -rw-r--r-- root/root 503336 2026-03-23 20:18 ./usr/lib/debug/.build-id/c2/f49a91a87cb39ac17223e6e3cc0f2561e53b29.debug drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/lib/debug/.build-id/d9/ -rw-r--r-- root/root 392624 2026-03-23 20:18 ./usr/lib/debug/.build-id/d9/7b550ee4d43c2e62201da711cbb0bb2093924f.debug drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 1156960 2026-03-23 20:18 ./usr/lib/debug/.dwz/x86_64-linux-gnu/seer.debug drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/share/ drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-03-23 20:18 ./usr/share/doc/seer-dbgsym -> seer seer_1.1.4-9_amd64.deb ---------------------- new Debian package, version 2.0. size 1233508 bytes: control archive=2672 bytes. 1460 bytes, 24 lines control 4251 bytes, 61 lines md5sums Package: seer Version: 1.1.4-9 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 5067 Depends: libarmadillo15 (>= 1:15.2.1+dfsg), libblas3 | libblas.so.3, libboost-program-options1.90.0 (>= 1.90.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgzstream0 (>= 1.5+git20171107.9a20658), libhdf5-310 (>= 1.14.3), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4), libtext-csv-perl Suggests: fsm-lite Section: science Priority: optional Homepage: https://github.com/johnlees/seer Description: genomic sequence element (kmer) enrichment analysis Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics. drwxr-xr-x root/root 0 2026-03-23 20:18 ./ drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/ drwxr-xr-x root/root 0 2026-03-23 20:18 ./usr/bin/ -rwxr-xr-x root/root 4597 2026-03-23 20:18 ./usr/bin/R_mds -rwxr-xr-x root/root 3794 2026-03-23 20:18 ./usr/bin/blast_top_hits -rwxr-xr-x root/root 2152 2026-03-23 20:18 ./usr/bin/blastn_to_phandango -rwxr-xr-x root/root 113048 2026-03-23 20:18 ./usr/bin/combineKmers -rwxr-xr-x root/root 84376 2026-03-23 20:18 ./usr/bin/filter_seer -rwxr-xr-x root/root 1869 2026-03-23 20:18 ./usr/bin/hits_to_fastq -rwxr-xr-x root/root 622016 2026-03-23 20:18 ./usr/bin/kmds -rwxr-xr-x root/root 199080 2026-03-23 20:18 ./usr/bin/map_back -rwxr-xr-x root/root 3200 2026-03-23 20:18 ./usr/bin/mapping_to_phandango -rwxr-xr-x root/root 1208 2026-03-23 20:18 ./usr/bin/mash2matrix 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01:53:47 +0000 | +------------------------------------------------------------------------------+ Purging /build/seer-RY2sjI Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 12 Jul 2026 01:53:49 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 125524 Build-Time: 105 Distribution: perl-5.44-throwaway Host Architecture: amd64 Install-Time: 19 Job: /srv/debomatic/incoming/seer_1.1.4-9.dsc Machine Architecture: amd64 Package: seer Package-Time: 127 Source-Version: 1.1.4-9 Space: 125524 Status: successful Version: 1.1.4-9 -------------------------------------------------------------------------------- Finished at 2026-07-12T01:53:46Z Build needed 00:02:07, 125524k disk space