sbuild (Debian sbuild) 0.91.10 (27 June 2026) on carme.larted.org.uk +==============================================================================+ | mummer 3.23+dfsg-8 (amd64) Fri, 10 Jul 2026 08:07:31 +0000 | +==============================================================================+ Package: mummer Version: 3.23+dfsg-8 Source Version: 3.23+dfsg-8 Distribution: perl-5.44-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Fri, 10 Jul 2026 08:07:33 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup mummer_3.23+dfsg-8 perl-5.44-throwaway amd64 ------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup mummer_3.23+dfsg-8 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Fri, 10 Jul 2026 08:07:33 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Hit:3 http://deb.debian.org/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Fri, 10 Jul 2026 08:07:35 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/mummer_3.23+dfsg-8.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 10 Jul 2026 08:07:36 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended, build-essential Filtered Build-Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/mummer-HihrNh/resolver-V7BeXC/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/mummer-HihrNh/resolver-V7BeXC/apt_archive ./ InRelease Get:2 copy:/build/mummer-HihrNh/resolver-V7BeXC/apt_archive ./ Release [609 B] Ign:3 copy:/build/mummer-HihrNh/resolver-V7BeXC/apt_archive ./ Release.gpg Get:4 copy:/build/mummer-HihrNh/resolver-V7BeXC/apt_archive ./ Sources [674 B] Get:5 copy:/build/mummer-HihrNh/resolver-V7BeXC/apt_archive ./ Packages [713 B] Fetched 1996 B in 0s (186 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libcairo2 libdebhelper-perl libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libglib2.0-0t64 libgraphite2-3 libharfbuzz-subset0 libharfbuzz0b libice6 libicu78 libkpathsea6 libmagic-mgc libmagic1t64 libmpfi0 libpaper-utils libpaper2 libpipeline1 libpixman-1-0 libpng16-16t64 libpotrace0 libproc2-1 libptexenc1 libsm6 libsynctex2 libteckit0 libtexlua53-5 libtext-charwidth-perl libtext-wrapi18n-perl libtool libuchardet0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2-16 libxmu6 libxpm4 libxrender1 libxt6t64 libzzip-0-13t64 m4 man-db po-debconf procps sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-recommended ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff low-memory-monitor libmpfi-doc libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex texlive-latex-recommended-doc texlive-luatex texlive-pstricks Recommended packages: curl | wget | lynx python3:any libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults lmodern dvisvgm tex-gyre tipa libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libcairo2 libdebhelper-perl libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libglib2.0-0t64 libgraphite2-3 libharfbuzz-subset0 libharfbuzz0b libice6 libicu78 libkpathsea6 libmagic-mgc libmagic1t64 libmpfi0 libpaper-utils libpaper2 libpipeline1 libpixman-1-0 libpng16-16t64 libpotrace0 libproc2-1 libptexenc1 libsm6 libsynctex2 libteckit0 libtexlua53-5 libtext-charwidth-perl libtext-wrapi18n-perl libtool libuchardet0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2-16 libxmu6 libxpm4 libxrender1 libxt6t64 libzzip-0-13t64 m4 man-db po-debconf procps sbuild-build-depends-main-dummy sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-recommended ucf x11-common xdg-utils 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 85.5 MB/85.5 MB of archives. After this operation, 281 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.44/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9324 B] Get:2 copy:/build/mummer-HihrNh/resolver-V7BeXC/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [880 B] Get:3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.8.2-1 [121 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libproc2-1 amd64 2:4.0.6-2 [69.2 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.6-2 [983 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-3 [332 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.2-1 [100.0 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:17 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0056 [47.1 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-3 [820 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:29 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-3 [2658 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.3 [934 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-2 [4533 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.14.3+dfsg-1 [493 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.88.2-1 [1536 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libharfbuzz-subset0 amd64 12.3.2-2+b2 [574 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:62 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2026.20260303.78225+ds-4 [158 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-5 [36.0 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b3 [25.5 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2026.20260303.78225+ds-4 [51.7 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2026.20260303.78225+ds-4 [63.2 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.13+ds-2 [370 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2026.20260303.78225+ds-4 [113 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-4+b1 [59.6 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.19-1 [58.9 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1+b2 [214 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.2-2+b1 [79.9 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2+b1 [58.9 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.20 [29.7 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2026.20260303.78225+ds-4 [9244 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2026.20260527-3 [23.9 MB] Get:83 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-recommended all 2026.20260527-3 [4991 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2026.20260527-3 [1437 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2026.20260527-3 [8452 kB] Preconfiguring packages ... Fetched 85.5 MB in 1s (140 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 14517 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.8.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.2-1) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../01-libproc2-1_2%3a4.0.6-2_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.6-2) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.6-2_amd64.deb ... Unpacking procps (2:4.0.6-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_1.0-3_amd64.deb ... Unpacking gettext-base (1.0-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.24.1-1_amd64.deb ... Unpacking groff-base (1.24.1-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.42.2-1_amd64.deb ... Unpacking bsdextrautils (2.42.2-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-3) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../13-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../14-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../15-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.73-2_all.deb ... Unpacking autoconf (2.73-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20240727.1+nmu1_all.deb ... Unpacking autotools-dev (20240727.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.18.1-4_all.deb ... Unpacking automake (1:1.18.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_1.0-3_all.deb ... Unpacking autopoint (1.0-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../21-libdebhelper-perl_14.3_all.deb ... Unpacking libdebhelper-perl (14.3) ... Selecting previously unselected package libtool. Preparing to unpack .../22-libtool_2.5.4-11_all.deb ... Unpacking libtool (2.5.4-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../23-dh-autoreconf_22_all.deb ... Unpacking dh-autoreconf (22) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../24-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../25-libfile-stripnondeterminism-perl_1.15.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../26-dh-strip-nondeterminism_1.15.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../27-libelf1t64_0.195-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.195-1) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.16-4_amd64.deb ... Unpacking dwz (0.16-4) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../29-libxml2-16_2.15.3+dfsg-1_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.3+dfsg-1) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_1.0-3_amd64.deb ... Unpacking gettext (1.0-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.22_all.deb ... Unpacking po-debconf (1.0.22) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_14.3_all.deb ... Unpacking debhelper (14.3) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../34-fonts-dejavu-mono_2.37-9_all.deb ... Unpacking fonts-dejavu-mono (2.37-9) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../35-fonts-dejavu-core_2.37-9_all.deb ... Unpacking fonts-dejavu-core (2.37-9) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../36-fontconfig-config_2.17.1-5_amd64.deb ... Unpacking fontconfig-config (2.17.1-5) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../37-fonts-lmodern_2.005-2_all.deb ... Unpacking fonts-lmodern (2.005-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../38-libbrotli1_1.2.0-3_amd64.deb ... Unpacking libbrotli1:amd64 (1.2.0-3) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../39-libpng16-16t64_1.6.58-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.58-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../40-libfreetype6_2.14.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.14.3+dfsg-1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../41-libfontconfig1_2.17.1-5_amd64.deb ... Unpacking libfontconfig1:amd64 (2.17.1-5) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../42-libpixman-1-0_0.46.4-1+b2_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.46.4-1+b2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../43-libxau6_1%3a1.0.11-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1+b2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../44-libxdmcp6_1%3a1.1.5-2+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-2+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../45-libxcb1_1.17.0-2+b2_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../46-libx11-data_2%3a1.8.13-1_all.deb ... Unpacking libx11-data (2:1.8.13-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../47-libx11-6_2%3a1.8.13-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.13-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../48-libxcb-render0_1.17.0-2+b2_amd64.deb ... Unpacking libxcb-render0:amd64 (1.17.0-2+b2) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../49-libxcb-shm0_1.17.0-2+b2_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-2+b2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../50-libxext6_2%3a1.3.4-1+b4_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b4) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../51-libxrender1_1%3a0.9.12-1+b2_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.12-1+b2) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../52-libcairo2_1.18.4-3+b1_amd64.deb ... Unpacking libcairo2:amd64 (1.18.4-3+b1) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../53-libglib2.0-0t64_2.88.2-1_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.88.2-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../54-libgraphite2-3_1.3.15-2_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.15-2) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../55-libharfbuzz0b_12.3.2-2+b2_amd64.deb ... Unpacking libharfbuzz0b:amd64 (12.3.2-2+b2) ... Selecting previously unselected package libharfbuzz-subset0:amd64. Preparing to unpack .../56-libharfbuzz-subset0_12.3.2-2+b2_amd64.deb ... Unpacking libharfbuzz-subset0:amd64 (12.3.2-2+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../57-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../58-libice6_2%3a1.1.1-1+b2_amd64.deb ... Unpacking libice6:amd64 (2:1.1.1-1+b2) ... Selecting previously unselected package libicu78:amd64. Preparing to unpack .../59-libicu78_78.3-2_amd64.deb ... Unpacking libicu78:amd64 (78.3-2) ... Selecting previously unselected package libkpathsea6:amd64. Preparing to unpack .../60-libkpathsea6_2026.20260303.78225+ds-4_amd64.deb ... Unpacking libkpathsea6:amd64 (2026.20260303.78225+ds-4) ... Selecting previously unselected package libmpfi0:amd64. Preparing to unpack .../61-libmpfi0_1.5.4+ds-5_amd64.deb ... Unpacking libmpfi0:amd64 (1.5.4+ds-5) ... Selecting previously unselected package libpaper2:amd64. Preparing to unpack .../62-libpaper2_2.2.5-0.4_amd64.deb ... Unpacking libpaper2:amd64 (2.2.5-0.4) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../63-libpaper-utils_2.2.5-0.4_amd64.deb ... Unpacking libpaper-utils (2.2.5-0.4) ... Selecting previously unselected package libpotrace0:amd64. Preparing to unpack .../64-libpotrace0_1.16-2+b3_amd64.deb ... Unpacking libpotrace0:amd64 (1.16-2+b3) ... Selecting previously unselected package libptexenc1:amd64. Preparing to unpack .../65-libptexenc1_2026.20260303.78225+ds-4_amd64.deb ... Unpacking libptexenc1:amd64 (2026.20260303.78225+ds-4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../66-libsm6_2%3a1.2.6-1+b2_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1+b2) ... Selecting previously unselected package libsynctex2:amd64. Preparing to unpack .../67-libsynctex2_2026.20260303.78225+ds-4_amd64.deb ... Unpacking libsynctex2:amd64 (2026.20260303.78225+ds-4) ... Selecting previously unselected package libteckit0:amd64. Preparing to unpack .../68-libteckit0_2.5.13+ds-2_amd64.deb ... Unpacking libteckit0:amd64 (2.5.13+ds-2) ... Selecting previously unselected package libtexlua53-5:amd64. Preparing to unpack .../69-libtexlua53-5_2026.20260303.78225+ds-4_amd64.deb ... Unpacking libtexlua53-5:amd64 (2026.20260303.78225+ds-4) ... Selecting previously unselected package libxt6t64:amd64. Preparing to unpack .../70-libxt6t64_1%3a1.2.1-1.3+b2_amd64.deb ... Unpacking libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../71-libxmu6_2%3a1.1.3-4+b1_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.3-4+b1) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../72-libxpm4_1%3a3.5.19-1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.19-1) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../73-libxaw7_2%3a1.0.16-1+b2_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.16-1+b2) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../74-libxi6_2%3a1.8.2-2+b1_amd64.deb ... Unpacking libxi6:amd64 (2:1.8.2-2+b1) ... Selecting previously unselected package libzzip-0-13t64:amd64. Preparing to unpack .../75-libzzip-0-13t64_0.13.78+dfsg.1-0.2+b1_amd64.deb ... Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2+b1) ... Selecting previously unselected package t1utils. Preparing to unpack .../76-t1utils_1.41-4_amd64.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package tex-common. Preparing to unpack .../77-tex-common_6.20_all.deb ... Unpacking tex-common (6.20) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../78-texlive-binaries_2026.20260303.78225+ds-4_amd64.deb ... Unpacking texlive-binaries (2026.20260303.78225+ds-4) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../79-xdg-utils_1.2.1-2_all.deb ... Unpacking xdg-utils (1.2.1-2) ... Selecting previously unselected package texlive-base. Preparing to unpack .../80-texlive-base_2026.20260527-3_all.deb ... Unpacking texlive-base (2026.20260527-3) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../81-texlive-fonts-recommended_2026.20260527-3_all.deb ... Unpacking texlive-fonts-recommended (2026.20260527-3) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../82-texlive-latex-base_2026.20260527-3_all.deb ... Unpacking texlive-latex-base (2026.20260527-3) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../83-texlive-latex-recommended_2026.20260527-3_all.deb ... Unpacking texlive-latex-recommended (2026.20260527-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../84-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.8.2-1) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up libgraphite2-3:amd64 (1.3.15-2) ... Setting up libpixman-1-0:amd64 (0.46.4-1+b2) ... Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libxau6:amd64 (1:1.0.11-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.5-2+b1) ... Setting up libxcb1:amd64 (1.17.0-2+b2) ... Setting up bsdextrautils (2.42.2-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libxcb-render0:amd64 (1.17.0-2+b2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.3+dfsg-1) ... Setting up libdebhelper-perl (14.3) ... Setting up libbrotli1:amd64 (1.2.0-3) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up gettext-base (1.0-3) ... Setting up m4 (1.4.21-1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b2) ... Setting up file (1:5.47-4) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up libicu78:amd64 (78.3-2) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up libglib2.0-0t64:amd64 (2.88.2-1) ... No schema files found: doing nothing. Setting up libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2+b1) ... Setting up libproc2-1:amd64 (2:4.0.6-2) ... Setting up libx11-data (2:1.8.13-1) ... Setting up libteckit0:amd64 (2.5.13+ds-2) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:amd64 (2026.20260303.78225+ds-4) ... Setting up fonts-dejavu-mono (2.37-9) ... Setting up libpng16-16t64:amd64 (1.6.58-1) ... Setting up autopoint (1.0-3) ... Setting up libmpfi0:amd64 (1.5.4+ds-5) ... Setting up fonts-dejavu-core (2.37-9) ... Setting up libkpathsea6:amd64 (2026.20260303.78225+ds-4) ... Setting up autoconf (2.73-2) ... Setting up dwz (0.16-4) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up procps (2:4.0.6-2) ... Setting up fonts-lmodern (2.005-2) ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Setting up libpaper2:amd64 (2.2.5-0.4) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:amd64 (2026.20260303.78225+ds-4) ... Setting up libpotrace0:amd64 (1.16-2+b3) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up libice6:amd64 (2:1.1.1-1+b2) ... Setting up gettext (1.0-3) ... Setting up libxpm4:amd64 (1:3.5.19-1) ... Setting up libxrender1:amd64 (1:0.9.12-1+b2) ... Setting up libtool (2.5.4-11) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libpaper-utils (2.2.5-0.4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (22) ... Setting up libptexenc1:amd64 (2026.20260303.78225+ds-4) ... Setting up libfreetype6:amd64 (2.14.3+dfsg-1) ... Setting up ucf (3.0056) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libsm6:amd64 (2:1.2.6-1+b2) ... Setting up libxi6:amd64 (2:1.8.2-2+b1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up tex-common (6.20) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up libharfbuzz-subset0:amd64 (12.3.2-2+b2) ... Setting up libxmu6:amd64 (2:1.1.3-4+b1) ... Setting up debhelper (14.3) ... Setting up libxaw7:amd64 (2:1.0.16-1+b2) ... Setting up texlive-binaries (2026.20260303.78225+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2026.20260527-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-latex-base (2026.20260527-3) ... Setting up texlive-latex-recommended (2026.20260527-3) ... Setting up texlive-fonts-recommended (2026.20260527-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-17) ... Processing triggers for tex-common (6.20) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures Fri, 10 Jul 2026 08:08:14 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment Fri, 10 Jul 2026 08:08:14 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.46.50.20260617-1 dpkg-dev_1.23.7 g++-15_15.3.0-1 gcc-15_15.3.0-1 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 linux-libc-dev_7.1.3-1 Package versions: apt_3.3.1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.46.50.20260617-1 binutils-common_2.46.50.20260617-1 binutils-x86-64-linux-gnu_2.46.50.20260617-1 bsdextrautils_2.42.2-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.3.0-1 cpp-15-x86-64-linux-gnu_15.3.0-1 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-5 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.47-4 findutils_4.10.0-4 fontconfig-config_2.17.1-5 fonts-dejavu-core_2.37-9 fonts-dejavu-mono_2.37-9 fonts-lmodern_2.005-2 g++_4:15.2.0-5+b1 g++-15_15.3.0-1 g++-15-x86-64-linux-gnu_15.3.0-1 g++-x86-64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.3.0-1 gcc-15-base_15.3.0-1 gcc-15-x86-64-linux-gnu_15.3.0-1 gcc-16-base_16.1.0-2 gcc-x86-64-linux-gnu_4:15.2.0-5+b1 gettext_1.0-3 gettext-base_1.0-3 gnupg_2.4.9-5 gnupg-l10n_2.4.9-5 gpg_2.4.9-5 gpg-agent_2.4.9-5 gpgconf_2.4.9-5 gpgsm_2.4.9-5 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.1 libarchive-zip-perl_1.68-1 libasan8_16.1.0-2 libassuan9_3.0.2-2+b2 libatomic1_16.1.0-2 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46.50.20260617-1 libblkid1_2.42.2-1 libbrotli1_1.2.0-3 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-17 libc-dev-bin_2.42-17 libc-gconv-modules-extra_2.42-17 libc6_2.42-17 libc6-dev_2.42-17 libcairo2_1.18.4-3+b1 libcap-ng0_0.9.3-1+b1 libcc1-0_16.1.0-2 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46.50.20260617-1 libctf0_2.46.50.20260617-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdpkg-perl_1.23.7 libeatmydata1_131-2+b2 libelf1t64_0.195-1 libexpat1_2.8.2-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.1-1 libfontconfig1_2.17.1-5 libfreetype6_2.14.3+dfsg-1 libgcc-15-dev_15.3.0-1 libgcc-s1_16.1.0-2 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libglib2.0-0t64_2.88.2-1 libgmp10_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.1.0-2 libgpg-error0_1.61-3 libgprofng0_2.46.50.20260617-1 libgraphite2-3_1.3.15-2 libharfbuzz-subset0_12.3.2-2+b2 libharfbuzz0b_12.3.2-2+b2 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.1.0-2 libice6_2:1.1.1-1+b2 libicu78_78.3-2 libidn2-0_2.3.8-5 libisl23_0.27-2 libitm1_16.1.0-2 libjansson4_2.15.1-1 libkpathsea6_2026.20260303.78225+ds-4 libksba8_1.8.0-3 libldap2_2.6.13+dfsg-1+b1 liblsan0_16.1.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-1 libmpc3_1.3.1-3 libmpfi0_1.5.4+ds-5 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.2-3 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpaper-utils_2.2.5-0.4 libpaper2_2.2.5-0.4 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-8 libperl5.44_5.44.0~rc2-1 libpipeline1_1.5.8-3 libpixman-1-0_0.46.4-1+b2 libpng16-16t64_1.6.58-1 libpotrace0_1.16-2+b3 libproc2-1_2:4.0.6-2 libptexenc1_2026.20260303.78225+ds-4 libquadmath0_16.1.0-2 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.1-1 libselinux1_3.10-1 libsframe3_2.46.50.20260617-1 libsm6_2:1.2.6-1+b2 libsmartcols1_2.42.2-1 libsqlite3-0_3.53.3-1 libssl3t64_3.6.3-1 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 libsynctex2_2026.20260303.78225+ds-4 libsystemd0_261.1-2 libtasn1-6_4.21.0-2+b1 libteckit0_2.5.13+ds-2 libtexlua53-5_2026.20260303.78225+ds-4 libtext-charwidth-perl_0.04-12+b1 libtext-wrapi18n-perl_0.06-11 libtinfo6_6.6+20260608-2 libtool_2.5.4-11 libtsan2_16.1.0-2 libubsan1_16.1.0-2 libuchardet0_0.0.8-2+b2 libudev1_261.1-2 libunistring5_1.4.2-1 libuuid1_2.42.2-1 libx11-6_2:1.8.13-1 libx11-data_2:1.8.13-1 libxau6_1:1.0.11-1+b2 libxaw7_2:1.0.16-1+b2 libxcb-render0_1.17.0-2+b2 libxcb-shm0_1.17.0-2+b2 libxcb1_1.17.0-2+b2 libxdmcp6_1:1.1.5-2+b1 libxext6_2:1.3.4-1+b4 libxi6_2:1.8.2-2+b1 libxml2-16_2.15.3+dfsg-1 libxmu6_2:1.1.3-4+b1 libxpm4_1:3.5.19-1 libxrender1_1:0.9.12-1+b2 libxt6t64_1:1.2.1-1.3+b2 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-3+b2 libzzip-0-13t64_0.13.78+dfsg.1-0.2+b1 linux-libc-dev_7.1.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.3-1 patch_2.8-2 perl_5.44.0~rc2-1 perl-base_5.44.0~rc2-1 perl-modules-5.40_5.40.1-8 perl-modules-5.44_5.44.0~rc2-1 pinentry-curses_1.3.2-4 po-debconf_1.0.22 procps_2:4.0.6-2 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.4.0-1 sysvinit-utils_3.18-1 t1utils_1.41-4 tar_1.35+dfsg-4 tex-common_6.20 texlive-base_2026.20260527-3 texlive-binaries_2026.20260303.78225+ds-4 texlive-fonts-recommended_2026.20260527-3 texlive-latex-base_2026.20260527-3 texlive-latex-recommended_2026.20260527-3 ucf_3.0056 util-linux_2.42.2-1 x11-common_1:7.7+26 xdg-utils_1.2.1-2 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Fri, 10 Jul 2026 08:08:14 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: mummer Binary: mummer, mummer-doc Architecture: any all Version: 3.23+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Charles Plessy Homepage: https://mummer.sourceforge.net/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/mummer Vcs-Git: https://salsa.debian.org/med-team/mummer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended Package-List: mummer deb science optional arch=any mummer-doc deb doc optional arch=all Checksums-Sha1: 0dc589e7ceeb59d222ec21decf225ba193527330 1112616 mummer_3.23+dfsg.orig.tar.xz 01b4363663073e877e4562a7426f715d13a2eab8 416352 mummer_3.23+dfsg-8.debian.tar.xz Checksums-Sha256: 1ef5eb11b22ff39d930ea9168ed6852a28be2c21e29ac791c4edcc86eca7d805 1112616 mummer_3.23+dfsg.orig.tar.xz 864d465c88d62db2150fe616ce20e3e640263e39b3d9eb85a3cef053d5ccec49 416352 mummer_3.23+dfsg-8.debian.tar.xz Files: 64c8ac0f462885f9978b9e49accbc71f 1112616 mummer_3.23+dfsg.orig.tar.xz 16ae45f82d20b64c4eb583a8aef7275f 416352 mummer_3.23+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOMhm8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHIZA//eUDhdfkDfyZByP7wPkFgHPcx/EEPDTiY YU0jpxYvcxPwibV3gKrlK9pdycowU2xhuLgfsQ3+Iq019Dz+cL//EPGDCNAh8U7p qnXX4cnV1afFAyB5mE2Z0GDYDt9OeyV/SUTE+6qIDa7ri0PvWl8k+UYwJgZ4Qu30 N5pATtkhm0WcRSuVIBBeieFlvPT4iXVP1OrKbACY7VWoPd4xhVXVLGIIuyg6eid9 C71WxafyBNuV/klWk1f4WmcTNpM/+OuWtcfZrfiU3zc6fTX43k93MS/BZxQmsiRS b39Dw5KDii3JDPwsQDMSpvmmhW18lJkGlIRO9Pe/3zAYzyl6sB36xqFpWvszd5AY 9j7Doxc47OGoB5h9nD1VpFIXz4B2/icc8rEUjvorLMfYedfGCMB021E9YbqToGUk +l3ziWgK+Tpk+boF1jWSOqw8mjoRPoOydlSE0wyC9GiMQ02W3EuWnr1NlfWP00aW wf00Akp6s55wtU9/KWHwCR4tLrCvxaBmMUKUTY4WIUvRgSDdM18sS8RdwXDAZUBG HCMC7jqsy9adgwSuDoy49MEpkScZ3DlL0cRdlX8WP/p4WpG9NKmte6GA+8GF60RG CEqfz52Nho4jDsK6bqMLrbM/GZ/YG+QoHfDn1HTpSdaVSGvuE+S3MjcJt4bWW/tK hg8rQICZlQ4= =+dC6 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./mummer_3.23+dfsg-8.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./mummer_3.23+dfsg-8.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting mummer in /build/mummer-HihrNh/mummer-3.23+dfsg dpkg-source: info: unpacking mummer_3.23+dfsg.orig.tar.xz dpkg-source: info: unpacking mummer_3.23+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_install_dirs.patch dpkg-source: info: applying 02at_docs_web.diff dpkg-source: info: applying enable_building_with_tetex.patch dpkg-source: info: applying fix_sf_privacy_breach_issue.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying addition_from_mugsy.patch dpkg-source: info: applying 0009-improve-performance-of-delta2maf.patch dpkg-source: info: applying mummerplot.patch dpkg-source: info: applying remove-csh-dependency.patch dpkg-source: info: applying remove-csh-from-doc.patch dpkg-source: info: applying reproducible-build.patch dpkg-source: info: applying gnuplot.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Fri, 10 Jul 2026 08:08:15 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network mummer_3.23+dfsg-8 perl-5.44-throwaway amd64 ------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network mummer_3.23+dfsg-8 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/mummer-HihrNh/mummer-3.23+dfsg SCHROOT_ALIAS_NAME=perl-5.44-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.44-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.44-amd64-debomatic-b9bc2058-a097-4f35-bac4-5e0674bffd71 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j2 clean make[1]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg' rm -f *~ core* cd /build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz; make clean make[2]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz' rm -f *~ cd libbasedir; make clean make[3]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir' rm -f *.splint rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~ make[3]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make clean make[3]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc' rm -f *.splint rm -f *.[aox] *~ make[3]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make clean make[3]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/mm3src' rm -f *.splint rm -f *.[ox] shit[123] *~ cd /build/mummer-HihrNh/mummer-3.23+dfsg; rm -f maxmat3.x maxmat3.dbg.x mummer make[3]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/mm3src' make[2]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz' cd /build/mummer-HihrNh/mummer-3.23+dfsg/src/tigr; make clean make[2]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/tigr' rm -f *.o *~ cd /build/mummer-HihrNh/mummer-3.23+dfsg; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf cd /build/mummer-HihrNh/mummer-3.23+dfsg/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf make[2]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/tigr' cd /build/mummer-HihrNh/mummer-3.23+dfsg/scripts; make clean make[2]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/scripts' rm -f *~ cd /build/mummer-HihrNh/mummer-3.23+dfsg; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff make[2]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/scripts' cd /build/mummer-HihrNh/mummer-3.23+dfsg/docs; make clean make[2]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/docs' rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf make[2]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building mummer using existing ../mummer_3.23+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building mummer in ../mummer_3.23+dfsg-8.debian.tar.xz dpkg-source: info: building mummer in ../mummer_3.23+dfsg-8.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg' [ -d /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin ] || mkdir -p /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin [ -d /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer ] || mkdir -p /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer dh_auto_build -- BIN_DIR=/build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer \ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j2 INSTALL="install --strip-program=true" BIN_DIR=/build/mummer-HihrNh/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/mummer-HihrNh/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg' cd /build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz; make mummer cd /build/mummer-HihrNh/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all make[3]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz' cd libbasedir; make libbase.a make[3]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/tigr' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o make[4]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c tigrinc.cc: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: tigrinc.cc:335:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 335 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ tigrinc.cc: In function ‘int Read_File(FILE*, long int&, std::map, char*>&, int)’: tigrinc.cc:452:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 452 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libbase.a a - cleanMUMcand.o a - clock.o a - mapfile.o a - multiseq.o a - procopt.o a - safescpy.o a - seterror.o a - space.o make[4]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o cd streesrc; make libstree.a make[4]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libstree.a a - construct.o a - access.o a - scanpref.o a - linkloc.o a - depthtab.o a - ex2leav.o a - dfs.o a - overmax.o a - oversucc.o a - addleafcount.o a - iterator.o make[4]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make mummer make[4]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/mm3src' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c /usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer make[4]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz/mm3src' make[3]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/kurtz' cd /build/mummer-HihrNh/mummer-3.23+dfsg/scripts; make all make[3]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/scripts' cp -a ../debian/sh-replacement-scripts/exact-tandems /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/promer chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/promer cp -a ../debian/sh-replacement-scripts/run-mummer1 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/scripts' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now mgaps.cc tigrinc.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o mgaps.cc: In function ‘int Process_Cluster(Match_t*, int, char*)’: mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 533 | label = "#\n"; | ^~~~~ mgaps.cc: In function ‘void Process_Matches(Match_t*, int, char*)’: mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 620 | label = "#\n"; | ^~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords show-coords.cc: In function ‘void printBtab(std::vector)’: show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 799 | type = "NUCMER"; | ^~~~~~~~ show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 801 | type = "PROMER"; | ^~~~~~~~ show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 803 | type = "NULL"; | ^~~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-snps.cc tigrinc.o translate.o delta.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks delta2blocks.cc: In function ‘void printAlignments(std::vector, char*, char*, char*, char*)’: delta2blocks.cc:408:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:26: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:32: warning: format ‘%d’ expects argument of type ‘int’, but argument 7 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf delta2maf.cc: In function ‘void printAlignments(std::vector, char*, char*, std::map, char*>&)’: delta2maf.cc:547:24: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=] 547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR)); | ~^ ~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:587:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:36: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:590:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:36: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:597:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:36: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:600:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:36: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:633:34: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 633 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:637:34: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 637 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:659:28: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 659 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:663:28: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 663 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:710:30: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 710 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:714:30: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 714 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:732:24: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 732 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:736:24: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 736 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ combineMUMs.cc:109:27: note: in expansion of macro ‘DEFAULT_ERROR_FILE_NAME’ 109 | char * Error_File_Name = DEFAULT_ERROR_FILE_NAME; | ^~~~~~~~~~~~~~~~~~~~~~~ combineMUMs.cc:135:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 135 | char * Query_Suffix = "Query"; | ^~~~~~~ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ combineMUMs.cc: In function ‘int Read_String(FILE*, char**, long int*, char*)’: combineMUMs.cc:1481:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1481 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postnuc.cc tigrinc.o sw_align.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/mummer-HihrNh/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postpro.cc tigrinc.o sw_align.o translate.o -o /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro; chmod 755 /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro make[3]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/src/tigr' make[2]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg' /usr/bin/make -C docs make[2]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg/docs' pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.29 (TeX Live 2026/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2025-11-01> L3 programming layer <2026-05-15> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file maxmat3man.aux. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) LaTeX Warning: Reference `SecBasicNotions' on page 1 undefined on input line 36 . Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] LaTeX Warning: Reference `SecBasicNotions' on page 2 undefined on input line 10 4. [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 132594 bytes). Transcript written on maxmat3man.log. pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.29 (TeX Live 2026/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2025-11-01> L3 programming layer <2026-05-15> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./maxmat3man.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 131942 bytes). Transcript written on maxmat3man.log. make[2]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg' dh_auto_test make -j2 check make[1]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg' check complete make[1]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg' create-stamp debian/debhelper-build-stamp debian/rules override_dh_prep make[1]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg' dh_prep -X debian/tmp make[1]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg' debian/rules override_dh_auto_install make[1]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg' mv /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /build/mummer-HihrNh/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer-annotate make[1]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/mummer-HihrNh/mummer-3.23+dfsg' dh_compress -Xpdf make[1]: Leaving directory '/build/mummer-HihrNh/mummer-3.23+dfsg' dh_fixperms dh_missing dh_dwz -a dwz: debian/mummer/usr/bin/mummer: DWARF compression not beneficial - old size 63792 new size 63975 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-8_all.deb'. dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-8_amd64.deb'. dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-8_amd64.deb'. dpkg-genbuildinfo -O../mummer_3.23+dfsg-8_amd64.buildinfo dpkg-genchanges -O../mummer_3.23+dfsg-8_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2026-07-10T08:08:54Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 10 Jul 2026 08:08:54 +0000 | +------------------------------------------------------------------------------+ mummer_3.23+dfsg-8_amd64.changes: --------------------------------- Format: 1.8 Date: Sun, 04 Dec 2022 12:29:43 +0100 Source: mummer Binary: mummer mummer-dbgsym mummer-doc Architecture: source amd64 all Version: 3.23+dfsg-8 Distribution: perl-5.44-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mummer - Efficient sequence alignment of full genomes mummer-doc - Documentation for MUMmer Closes: 956751 Changes: mummer (3.23+dfsg-8) unstable; urgency=medium . * d/watch: Fix name of upstream tarball * Apply hint by Étienne Mollier to fit current gnuplot version Closes: #956751 * Use secure URI in Homepage field. * Update standards version to 4.6.1, no changes needed. Checksums-Sha1: 41ea8c7fb88df0ddaa7df3e29e72698800ae175c 1265 mummer_3.23+dfsg-8.dsc 5c2bb9c924a63692695a46b9ade6f68714a4fd75 416360 mummer_3.23+dfsg-8.debian.tar.xz 9998fd5d39443b161766263275769742fa453253 3289556 mummer-dbgsym_3.23+dfsg-8_amd64.deb d0b2c4ac3c9c1bed572ff1de7cfbdae5ec9ad83b 1313076 mummer-doc_3.23+dfsg-8_all.deb 0a2303b78ba850f8211cfd0cc3a8319bd1fce6f9 7267 mummer_3.23+dfsg-8_amd64.buildinfo 0537f08de7a1875449aea1f258aba1cf5bf17847 671048 mummer_3.23+dfsg-8_amd64.deb Checksums-Sha256: 3dba7203f00c6de86e4a64b8dcc5d945203421c5b63bf94b1904ff0e83bcb719 1265 mummer_3.23+dfsg-8.dsc 813d45a0a8fd1e646dcefdd589bf5045bb49bae84a3d39eea792a3f5ef05cb42 416360 mummer_3.23+dfsg-8.debian.tar.xz bd6b7ac2966bcb26a0146d30aa83f32b79959daa592e7b8db9b6159532d3d1b2 3289556 mummer-dbgsym_3.23+dfsg-8_amd64.deb 63f3e98cdc0e0beda3b83d3886982e481f5e275ea992d162af19fcdd0eb875e6 1313076 mummer-doc_3.23+dfsg-8_all.deb d5feb53ae9db861aeff277cb4f4b2399a6349c1fa3d1acc1dad018501c4308e2 7267 mummer_3.23+dfsg-8_amd64.buildinfo 1d1d3eddb8a1ad54e50a6100eb984b570aa4173f298fa6ac9b083b5c7e148a2e 671048 mummer_3.23+dfsg-8_amd64.deb Files: baf7a0e5dc74b8f4ae3e08250f15a642 1265 science optional mummer_3.23+dfsg-8.dsc bd70a00d8c0074b22ecd6c579b878293 416360 science optional mummer_3.23+dfsg-8.debian.tar.xz 7d1075c36b11f962aafbfaa916844901 3289556 debug optional mummer-dbgsym_3.23+dfsg-8_amd64.deb 571b564d59470f3570f167e441fbfe74 1313076 doc optional mummer-doc_3.23+dfsg-8_all.deb c8ab80eeb497ba26c2d5f38844aa3ebd 7267 science optional mummer_3.23+dfsg-8_amd64.buildinfo f4ecd1ef7e80c9ff7c9bb50478109fe6 671048 science optional mummer_3.23+dfsg-8_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 10 Jul 2026 08:08:55 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mummer Binary: mummer mummer-dbgsym mummer-doc Architecture: all amd64 source Version: 3.23+dfsg-8 Checksums-Md5: baf7a0e5dc74b8f4ae3e08250f15a642 1265 mummer_3.23+dfsg-8.dsc 7d1075c36b11f962aafbfaa916844901 3289556 mummer-dbgsym_3.23+dfsg-8_amd64.deb 571b564d59470f3570f167e441fbfe74 1313076 mummer-doc_3.23+dfsg-8_all.deb f4ecd1ef7e80c9ff7c9bb50478109fe6 671048 mummer_3.23+dfsg-8_amd64.deb Checksums-Sha1: 41ea8c7fb88df0ddaa7df3e29e72698800ae175c 1265 mummer_3.23+dfsg-8.dsc 9998fd5d39443b161766263275769742fa453253 3289556 mummer-dbgsym_3.23+dfsg-8_amd64.deb d0b2c4ac3c9c1bed572ff1de7cfbdae5ec9ad83b 1313076 mummer-doc_3.23+dfsg-8_all.deb 0537f08de7a1875449aea1f258aba1cf5bf17847 671048 mummer_3.23+dfsg-8_amd64.deb Checksums-Sha256: 3dba7203f00c6de86e4a64b8dcc5d945203421c5b63bf94b1904ff0e83bcb719 1265 mummer_3.23+dfsg-8.dsc bd6b7ac2966bcb26a0146d30aa83f32b79959daa592e7b8db9b6159532d3d1b2 3289556 mummer-dbgsym_3.23+dfsg-8_amd64.deb 63f3e98cdc0e0beda3b83d3886982e481f5e275ea992d162af19fcdd0eb875e6 1313076 mummer-doc_3.23+dfsg-8_all.deb 1d1d3eddb8a1ad54e50a6100eb984b570aa4173f298fa6ac9b083b5c7e148a2e 671048 mummer_3.23+dfsg-8_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 10 Jul 2026 08:08:54 +0000 Build-Path: /build/mummer-HihrNh/mummer-3.23+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-3), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3), binutils (= 2.46.50.20260617-1), binutils-common (= 2.46.50.20260617-1), binutils-x86-64-linux-gnu (= 2.46.50.20260617-1), bsdextrautils (= 2.42.2-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.3.0-1), cpp-15-x86-64-linux-gnu (= 15.3.0-1), cpp-x86-64-linux-gnu (= 4:15.2.0-5+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.3), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.47-4), findutils (= 4.10.0-4), fontconfig-config (= 2.17.1-5), fonts-dejavu-core (= 2.37-9), fonts-dejavu-mono (= 2.37-9), fonts-lmodern (= 2.005-2), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.3.0-1), g++-15-x86-64-linux-gnu (= 15.3.0-1), g++-x86-64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.3.0-1), gcc-15-base (= 15.3.0-1), gcc-15-x86-64-linux-gnu (= 15.3.0-1), gcc-16-base (= 16.1.0-2), gcc-x86-64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 1.0-3), gettext-base (= 1.0-3), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.1.0-2), libatomic1 (= 16.1.0-2), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46.50.20260617-1), libblkid1 (= 2.42.2-1), libbrotli1 (= 1.2.0-3), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-17), libc-dev-bin (= 2.42-17), libc-gconv-modules-extra (= 2.42-17), libc6 (= 2.42-17), libc6-dev (= 2.42-17), libcairo2 (= 1.18.4-3+b1), libcap-ng0 (= 0.9.3-1+b1), libcc1-0 (= 16.1.0-2), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46.50.20260617-1), libctf0 (= 2.46.50.20260617-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libexpat1 (= 2.8.2-1), libffi8 (= 3.5.2-4), libfile-stripnondeterminism-perl (= 1.15.1-1), libfontconfig1 (= 2.17.1-5), libfreetype6 (= 2.14.3+dfsg-1), libgcc-15-dev (= 15.3.0-1), libgcc-s1 (= 16.1.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libglib2.0-0t64 (= 2.88.2-1), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.1.0-2), libgprofng0 (= 2.46.50.20260617-1), libgraphite2-3 (= 1.3.15-2), libharfbuzz-subset0 (= 12.3.2-2+b2), libharfbuzz0b (= 12.3.2-2+b2), libhwasan0 (= 16.1.0-2), libice6 (= 2:1.1.1-1+b2), libicu78 (= 78.3-2), libisl23 (= 0.27-2), libitm1 (= 16.1.0-2), libjansson4 (= 2.15.1-1), libkpathsea6 (= 2026.20260303.78225+ds-4), liblsan0 (= 16.1.0-2), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.2-1), libmpc3 (= 1.3.1-3), libmpfi0 (= 1.5.4+ds-5), libmpfr6 (= 4.2.2-3), libncursesw6 (= 6.6+20260608-2), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpaper-utils (= 2.2.5-0.4), libpaper2 (= 2.2.5-0.4), libpcre2-8-0 (= 10.46-1+b2), libperl5.44 (= 5.44.0~rc2-1), libpipeline1 (= 1.5.8-3), libpixman-1-0 (= 0.46.4-1+b2), libpng16-16t64 (= 1.6.58-1), libpotrace0 (= 1.16-2+b3), libproc2-1 (= 2:4.0.6-2), libptexenc1 (= 2026.20260303.78225+ds-4), libquadmath0 (= 16.1.0-2), libseccomp2 (= 2.6.1-1), libselinux1 (= 3.10-1), libsframe3 (= 2.46.50.20260617-1), libsm6 (= 2:1.2.6-1+b2), libsmartcols1 (= 2.42.2-1), libssl3t64 (= 3.6.3-1), libstdc++-15-dev (= 15.3.0-1), libstdc++6 (= 16.1.0-2), libsynctex2 (= 2026.20260303.78225+ds-4), libsystemd0 (= 261.1-2), libteckit0 (= 2.5.13+ds-2), libtexlua53-5 (= 2026.20260303.78225+ds-4), libtext-charwidth-perl (= 0.04-12+b1), libtext-wrapi18n-perl (= 0.06-11), libtinfo6 (= 6.6+20260608-2), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-2), libubsan1 (= 16.1.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 261.1-2), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-1), libx11-6 (= 2:1.8.13-1), libx11-data (= 2:1.8.13-1), libxau6 (= 1:1.0.11-1+b2), libxaw7 (= 2:1.0.16-1+b2), libxcb-render0 (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxdmcp6 (= 1:1.1.5-2+b1), libxext6 (= 2:1.3.4-1+b4), libxi6 (= 2:1.8.2-2+b1), libxml2-16 (= 2.15.3+dfsg-1), libxmu6 (= 2:1.1.3-4+b1), libxpm4 (= 1:3.5.19-1), libxrender1 (= 1:0.9.12-1+b2), libxt6t64 (= 1:1.2.1-1.3+b2), libzstd1 (= 1.5.7+dfsg-3+b2), libzzip-0-13t64 (= 0.13.78+dfsg.1-0.2+b1), linux-libc-dev (= 7.1.3-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.3-1), patch (= 2.8-2), perl (= 5.44.0~rc2-1), perl-base (= 5.44.0~rc2-1), perl-modules-5.44 (= 5.44.0~rc2-1), po-debconf (= 1.0.22), procps (= 2:4.0.6-2), rpcsvc-proto (= 1.4.4-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), t1utils (= 1.41-4), tar (= 1.35+dfsg-4), tex-common (= 6.20), texlive-base (= 2026.20260527-3), texlive-binaries (= 2026.20260303.78225+ds-4), texlive-fonts-recommended (= 2026.20260527-3), texlive-latex-base (= 2026.20260527-3), texlive-latex-recommended (= 2026.20260527-3), ucf (= 3.0056), util-linux (= 2.42.2-1), x11-common (= 1:7.7+26), xdg-utils (= 1.2.1-2), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1670153383" +------------------------------------------------------------------------------+ | Package contents Fri, 10 Jul 2026 08:08:55 +0000 | +------------------------------------------------------------------------------+ mummer-dbgsym_3.23+dfsg-8_amd64.deb ----------------------------------- new Debian package, version 2.0. size 3289556 bytes: control archive=1412 bytes. 1072 bytes, 12 lines control 1991 bytes, 19 lines md5sums Package: mummer-dbgsym Source: mummer Version: 3.23+dfsg-8 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3782 Depends: mummer (= 3.23+dfsg-8) Section: debug Priority: optional Description: debug symbols for mummer Build-Ids: 02ca0306db44e9b99851d056bb5dc2f51ac94bc4 0a059c709d94d251f09536e47489d9498dfc5d4e 0c9d1ad46495a953a64dde1081e8ab1b1533b7d8 12edbd362cc61363cae745a0624c39fadc726333 367dbbfc5b5da02aa30630b0b8493d9645e8b280 411ce3def21bc36de916e2e6f99a6471c2ea8aa2 56b5d8960e2820723a206197715ce797c8cede0b 5cbd8436f4713c7f0cda28b4e03ee26e57d9d79c 70bd077bf40b53152fa06360cd4df777a2205bfb 7885938f6c85086106e2a14f0631d9ec9413ae4a 9628ce5318309807b898b766a8397dfc36f6bbce a42e89763bc507737f14d62bc058993976714223 c6bc1404fb6643928e779f6857383c304b2462f5 d35e73976b4df663da70beedd89570838ae21c63 dc2d3d68017c55f7836f23c068bba656b88df68d dc97badf1d18db273d3235fa29ec95b41783304f dcca254c72ba33484e08f3d775bdbe84cc554c80 dfa5100aedd9a871751203ce65b24984c54f215a drwxr-xr-x root/root 0 2022-12-04 11:29 ./ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/02/ -rw-r--r-- root/root 98456 2022-12-04 11:29 ./usr/lib/debug/.build-id/02/ca0306db44e9b99851d056bb5dc2f51ac94bc4.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/0a/ -rw-r--r-- root/root 299840 2022-12-04 11:29 ./usr/lib/debug/.build-id/0a/059c709d94d251f09536e47489d9498dfc5d4e.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/0c/ -rw-r--r-- root/root 51552 2022-12-04 11:29 ./usr/lib/debug/.build-id/0c/9d1ad46495a953a64dde1081e8ab1b1533b7d8.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/12/ -rw-r--r-- root/root 243520 2022-12-04 11:29 ./usr/lib/debug/.build-id/12/edbd362cc61363cae745a0624c39fadc726333.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/36/ -rw-r--r-- root/root 66000 2022-12-04 11:29 ./usr/lib/debug/.build-id/36/7dbbfc5b5da02aa30630b0b8493d9645e8b280.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/41/ -rw-r--r-- root/root 73416 2022-12-04 11:29 ./usr/lib/debug/.build-id/41/1ce3def21bc36de916e2e6f99a6471c2ea8aa2.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/56/ -rw-r--r-- root/root 187776 2022-12-04 11:29 ./usr/lib/debug/.build-id/56/b5d8960e2820723a206197715ce797c8cede0b.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/5c/ -rw-r--r-- root/root 50128 2022-12-04 11:29 ./usr/lib/debug/.build-id/5c/bd8436f4713c7f0cda28b4e03ee26e57d9d79c.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/70/ -rw-r--r-- root/root 409288 2022-12-04 11:29 ./usr/lib/debug/.build-id/70/bd077bf40b53152fa06360cd4df777a2205bfb.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/78/ -rw-r--r-- root/root 333680 2022-12-04 11:29 ./usr/lib/debug/.build-id/78/85938f6c85086106e2a14f0631d9ec9413ae4a.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/96/ -rw-r--r-- root/root 452040 2022-12-04 11:29 ./usr/lib/debug/.build-id/96/28ce5318309807b898b766a8397dfc36f6bbce.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/a4/ -rw-r--r-- root/root 397744 2022-12-04 11:29 ./usr/lib/debug/.build-id/a4/2e89763bc507737f14d62bc058993976714223.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/c6/ -rw-r--r-- root/root 43184 2022-12-04 11:29 ./usr/lib/debug/.build-id/c6/bc1404fb6643928e779f6857383c304b2462f5.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/d3/ -rw-r--r-- root/root 90880 2022-12-04 11:29 ./usr/lib/debug/.build-id/d3/5e73976b4df663da70beedd89570838ae21c63.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/dc/ -rw-r--r-- root/root 196592 2022-12-04 11:29 ./usr/lib/debug/.build-id/dc/2d3d68017c55f7836f23c068bba656b88df68d.debug -rw-r--r-- root/root 321576 2022-12-04 11:29 ./usr/lib/debug/.build-id/dc/97badf1d18db273d3235fa29ec95b41783304f.debug -rw-r--r-- root/root 42368 2022-12-04 11:29 ./usr/lib/debug/.build-id/dc/ca254c72ba33484e08f3d775bdbe84cc554c80.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.build-id/df/ -rw-r--r-- root/root 315808 2022-12-04 11:29 ./usr/lib/debug/.build-id/df/a5100aedd9a871751203ce65b24984c54f215a.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 161872 2022-12-04 11:29 ./usr/lib/debug/.dwz/x86_64-linux-gnu/mummer.debug drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer-dbgsym -> mummer mummer-doc_3.23+dfsg-8_all.deb ------------------------------ new Debian package, version 2.0. size 1313076 bytes: control archive=2884 bytes. 1113 bytes, 24 lines control 6688 bytes, 76 lines md5sums Package: mummer-doc Source: mummer Version: 3.23+dfsg-8 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 1703 Section: doc Priority: optional Homepage: https://mummer.sourceforge.net/ Description: Documentation for MUMmer MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences. . This package contains the documentation for MUMmer, a system for rapidly aligning entire genomes. drwxr-xr-x root/root 0 2022-12-04 11:29 ./ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc-base/ -rw-r--r-- root/root 1005 2022-12-04 11:29 ./usr/share/doc-base/mummer-doc.mummer-doc drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer-doc/ -rw-r--r-- root/root 545 2022-12-04 11:29 ./usr/share/doc/mummer-doc/README.Debian -rw-r--r-- root/root 776 2022-12-04 11:29 ./usr/share/doc/mummer-doc/changelog.Debian.gz -rw-r--r-- root/root 1456 2011-12-17 02:49 ./usr/share/doc/mummer-doc/changelog.gz -rw-r--r-- root/root 1224 2022-12-04 11:29 ./usr/share/doc/mummer-doc/copyright lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer-doc/examples -> html/examples drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer-doc/html/ -rw-r--r-- root/root 16745 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/applications.html -rw-r--r-- root/root 16745 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/compare.html drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer-doc/html/examples/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer-doc/html/examples/data/ -rw-r--r-- root/root 93602 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/B_anthracis_Mslice.fasta.gz -rw-r--r-- root/root 92866 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/B_anthracis_contigs.fasta.gz -rw-r--r-- root/root 1611 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/D_melanogaster_2Rslice.cds -rw-r--r-- root/root 11550 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/D_melanogaster_2Rslice.fasta.gz -rw-r--r-- root/root 1610 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/D_melanogaster_2Rslice.utr -rw-r--r-- root/root 13303 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/D_pseudoobscura_contigs.fasta.gz -rw-r--r-- root/root 21101 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/H_pylori26695_Bslice.fasta.gz -rw-r--r-- root/root 80705 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/H_pylori26695_Eslice.fasta.gz -rw-r--r-- root/root 21099 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/H_pyloriJ99_Bslice.fasta.gz -rw-r--r-- root/root 77762 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/H_pyloriJ99_Eslice.fasta.gz -rw-r--r-- root/root 168 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/README -rw-r--r-- root/root 1567 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mapview_0.fig.gz -rw-r--r-- root/root 8232 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mapview_0.pdf -rw-r--r-- root/root 38944 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer.fplot.gz -rw-r--r-- root/root 511 2022-12-04 11:29 ./usr/share/doc/mummer-doc/html/examples/data/mummer.gp -rw-r--r-- root/root 32349 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer.mums.gz -rw-r--r-- root/root 29485 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer.ps.gz -rw-r--r-- root/root 10800 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer.rplot.gz -rw-r--r-- root/root 50091 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer1.align.gz -rw-r--r-- root/root 10623 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer1.errorsgaps.gz -rw-r--r-- root/root 9899 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer1.gaps.gz -rw-r--r-- root/root 7570 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer1.out.gz -rw-r--r-- root/root 42476 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer3.align.gz -rw-r--r-- root/root 10498 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer3.errorsgaps.gz -rw-r--r-- root/root 9795 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer3.gaps.gz -rw-r--r-- root/root 7663 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/mummer3.out.gz -rw-r--r-- root/root 1532 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/nucmer.cluster.gz -rw-r--r-- root/root 1272 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/nucmer.coords.gz -rw-r--r-- root/root 2707 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/nucmer.delta -rw-r--r-- root/root 1338 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/nucmer.snps.gz -rw-r--r-- root/root 1234 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/nucmer.tiling -rw-r--r-- root/root 2484 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/promer.aligns -rw-r--r-- root/root 2371 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/promer.cluster.gz -rw-r--r-- root/root 1863 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/promer.coords.gz -rw-r--r-- root/root 1567 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/data/promer.delta.gz -rw-r--r-- root/root 7367 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/dotplot.gif -rw-r--r-- root/root 9145 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/examples_logo.gif -rw-r--r-- root/root 34176 2022-12-04 11:29 ./usr/share/doc/mummer-doc/html/examples/index.html -rw-r--r-- root/root 7221 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/mapplot.gif -rw-r--r-- root/root 16476 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/mapview_fig.jpg -rw-r--r-- root/root 7631 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/examples/mummer_ps.jpg -rw-r--r-- root/root 13837 2022-12-04 11:29 ./usr/share/doc/mummer-doc/html/index.html -rw-r--r-- root/root 4015 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/logo.gif drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer-doc/html/manual/ -rw-r--r-- root/root 21628 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/AlignmentTypes.odg -rw-r--r-- root/root 28461 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/AlignmentTypes.pdf -rw-r--r-- root/root 4407 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/covplot.gif -rw-r--r-- root/root 7449 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/dotplot.gif -rw-r--r-- root/root 2428 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/gaps.gif -rw-r--r-- root/root 174229 2022-12-04 11:29 ./usr/share/doc/mummer-doc/html/manual/index.html -rw-r--r-- root/root 8862 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/manual_logo.gif -rw-r--r-- root/root 7221 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/mapplot.gif -rw-r--r-- root/root 2668 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/mgaps.gif -rw-r--r-- root/root 9480 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/multiplota.gif -rw-r--r-- root/root 9145 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/multiplotb.gif -rw-r--r-- root/root 3512 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/nuc_proex.gif -rw-r--r-- root/root 4800 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/nucex.gif -rw-r--r-- root/root 2502 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/osi.gif -rw-r--r-- root/root 4833 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/manual/pro_proex.gif -rw-r--r-- root/root 1634 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/mummer-help.gif -rw-r--r-- root/root 1660 2011-12-17 02:49 ./usr/share/doc/mummer-doc/html/mummer-users.gif drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer/ -rw-r--r-- root/root 1388 2011-12-17 02:49 ./usr/share/doc/mummer/differences.README -rw-r--r-- root/root 3303 2011-12-17 02:49 ./usr/share/doc/mummer/dnadiff.README.gz -rw-r--r-- root/root 3482 2011-12-17 02:49 ./usr/share/doc/mummer/mapview.README.gz -rw-r--r-- root/root 131942 2022-12-04 11:29 ./usr/share/doc/mummer/maxmat3man.pdf -rw-r--r-- root/root 401335 2011-12-17 02:49 ./usr/share/doc/mummer/maxmat3src.pdf -rw-r--r-- root/root 5034 2011-12-17 02:49 ./usr/share/doc/mummer/nucmer.README.gz -rw-r--r-- root/root 5249 2011-12-17 02:49 ./usr/share/doc/mummer/promer.README.gz -rw-r--r-- root/root 2174 2022-12-04 11:29 ./usr/share/doc/mummer/run-mummer1.README.gz -rw-r--r-- root/root 1869 2011-12-17 02:49 ./usr/share/doc/mummer/run-mummer3.README.gz mummer_3.23+dfsg-8_amd64.deb ---------------------------- new Debian package, version 2.0. size 671048 bytes: control archive=2636 bytes. 1100 bytes, 21 lines control 4412 bytes, 63 lines md5sums Package: mummer Version: 3.23+dfsg-8 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3338 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), perl:any, gawk Section: science Priority: optional Homepage: https://mummer.sourceforge.net/ Description: Efficient sequence alignment of full genomes MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences. drwxr-xr-x root/root 0 2022-12-04 11:29 ./ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/bin/ -rwxr-xr-x root/root 55656 2022-12-04 11:29 ./usr/bin/combineMUMs -rwxr-xr-x root/root 72088 2022-12-04 11:29 ./usr/bin/delta-filter -rwxr-xr-x root/root 88480 2022-12-04 11:29 ./usr/bin/delta2blocks -rwxr-xr-x root/root 113056 2022-12-04 11:29 ./usr/bin/delta2maf -rwxr-xr-x root/root 26821 2022-12-04 11:29 ./usr/bin/dnadiff -rwxr-xr-x root/root 766 2022-12-04 11:29 ./usr/bin/exact-tandems -rwxr-xr-x root/root 26944 2022-12-04 11:29 ./usr/bin/gaps -rwxr-xr-x root/root 29757 2022-12-04 11:29 ./usr/bin/mapview -rwxr-xr-x root/root 31072 2022-12-04 11:29 ./usr/bin/mgaps -rwxr-xr-x root/root 59472 2022-12-04 11:29 ./usr/bin/mummer -rwxr-xr-x root/root 26944 2022-12-04 11:29 ./usr/bin/mummer-annotate -rwxr-xr-x root/root 49569 2022-12-04 11:29 ./usr/bin/mummerplot -rwxr-xr-x root/root 12390 2022-12-04 11:29 ./usr/bin/nucmer -rwxr-xr-x root/root 5884 2022-12-04 11:29 ./usr/bin/nucmer2xfig -rwxr-xr-x root/root 11898 2022-12-04 11:29 ./usr/bin/promer -rwxr-xr-x root/root 39248 2022-12-04 11:29 ./usr/bin/repeat-match -rwxr-xr-x root/root 981 2022-12-04 11:29 ./usr/bin/run-mummer1 -rwxr-xr-x root/root 1115 2022-12-04 11:29 ./usr/bin/run-mummer3 -rwxr-xr-x root/root 100768 2022-12-04 11:29 ./usr/bin/show-aligns -rwxr-xr-x root/root 100760 2022-12-04 11:29 ./usr/bin/show-coords -rwxr-xr-x root/root 84376 2022-12-04 11:29 ./usr/bin/show-diff -rwxr-xr-x root/root 121240 2022-12-04 11:29 ./usr/bin/show-snps -rwxr-xr-x root/root 113056 2022-12-04 11:29 ./usr/bin/show-tiling drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/lib/mummer/ -rwxr-xr-x root/root 76112 2022-12-04 11:29 ./usr/lib/mummer/postnuc -rwxr-xr-x root/root 80208 2022-12-04 11:29 ./usr/lib/mummer/postpro -rwxr-xr-x root/root 22848 2022-12-04 11:29 ./usr/lib/mummer/prenuc -rwxr-xr-x root/root 35136 2022-12-04 11:29 ./usr/lib/mummer/prepro -rw-r--r-- root/root 760 2011-12-17 02:49 ./usr/lib/mummer/tandem-repeat.awk drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer/ -rw-r--r-- root/root 327 2011-12-17 02:49 ./usr/share/doc/mummer/ACKNOWLEDGEMENTS -rw-r--r-- root/root 343 2022-12-04 11:29 ./usr/share/doc/mummer/NEWS.gz -rw-r--r-- root/root 207 2022-12-04 11:29 ./usr/share/doc/mummer/README.Debian -rw-r--r-- root/root 11463 2022-12-04 11:29 ./usr/share/doc/mummer/README.gz -rw-r--r-- root/root 773 2022-12-04 11:29 ./usr/share/doc/mummer/changelog.Debian.gz -rw-r--r-- root/root 1456 2011-12-17 02:49 ./usr/share/doc/mummer/changelog.gz -rw-r--r-- root/root 1224 2022-12-04 11:29 ./usr/share/doc/mummer/copyright drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer/examples/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/ -rw-r--r-- root/root 12278 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/mapview_0.fig -rw-r--r-- root/root 116949 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/mummer.mums -rw-r--r-- root/root 190927 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/mummer3.align -rw-r--r-- root/root 53082 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/mummer3.errorsgaps -rw-r--r-- root/root 45370 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/mummer3.gaps -rw-r--r-- root/root 28238 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/mummer3.out -rw-r--r-- root/root 5110 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/nucmer.coords -rw-r--r-- root/root 2707 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/nucmer.delta -rw-r--r-- root/root 7492 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/nucmer.snps -rw-r--r-- root/root 1234 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/nucmer.tiling -rw-r--r-- root/root 2484 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/promer.aligns -rw-r--r-- root/root 7888 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/promer.coords -rw-r--r-- root/root 4119 2022-12-04 11:29 ./usr/share/doc/mummer/examples/expected/promer.delta drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/ -rw-r--r-- root/root 317830 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/B_anthracis_Mslice.fasta -rw-r--r-- root/root 314263 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/B_anthracis_contigs.fasta -rw-r--r-- root/root 1611 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/D_melanogaster_2Rslice.cds -rw-r--r-- root/root 36219 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/D_melanogaster_2Rslice.fasta -rw-r--r-- root/root 1610 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/D_melanogaster_2Rslice.utr -rw-r--r-- root/root 42835 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/D_pseudoobscura_contigs.fasta -rw-r--r-- root/root 70880 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/H_pylori26695_Bslice.fasta -rw-r--r-- root/root 279242 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/H_pylori26695_Eslice.fasta -rw-r--r-- root/root 70878 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/H_pyloriJ99_Bslice.fasta -rw-r--r-- root/root 268919 2022-12-04 11:29 ./usr/share/doc/mummer/examples/input/H_pyloriJ99_Eslice.fasta drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/man/ drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/combineMUMs.1.gz -> mummer.1.gz -rw-r--r-- root/root 1241 2022-12-04 11:29 ./usr/share/man/man1/delta-filter.1.gz -rw-r--r-- root/root 720 2022-12-04 11:29 ./usr/share/man/man1/delta2blocks.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/delta2maf.1.gz -> delta2blocks.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/dnadiff.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/exact-tandems.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/gaps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/mapview.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/mgaps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/mummer-annotate.1.gz -> mummer.1.gz -rw-r--r-- root/root 5669 2022-12-04 11:29 ./usr/share/man/man1/mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/mummerplot.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/nucmer.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/nucmer2xfig.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/promer.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/repeat-match.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/run-mummer1.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/run-mummer3.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/show-aligns.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/show-coords.1.gz -> mummer.1.gz -rw-r--r-- root/root 910 2022-12-04 11:29 ./usr/share/man/man1/show-diff.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/show-snps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2022-12-04 11:29 ./usr/share/man/man1/show-tiling.1.gz -> mummer.1.gz drwxr-xr-x root/root 0 2022-12-04 11:29 ./usr/share/perl5/ -rw-r--r-- root/root 54266 2011-12-17 02:49 ./usr/share/perl5/Foundation.pm +------------------------------------------------------------------------------+ | Post Build Fri, 10 Jul 2026 08:08:57 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 10 Jul 2026 08:08:57 +0000 | +------------------------------------------------------------------------------+ Purging /build/mummer-HihrNh Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 10 Jul 2026 08:08:58 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 40472 Build-Time: 39 Distribution: perl-5.44-throwaway Host Architecture: amd64 Install-Time: 38 Job: /srv/debomatic/incoming/mummer_3.23+dfsg-8.dsc Machine Architecture: amd64 Package: mummer Package-Time: 83 Source-Version: 3.23+dfsg-8 Space: 40472 Status: successful Version: 3.23+dfsg-8 -------------------------------------------------------------------------------- Finished at 2026-07-10T08:08:54Z Build needed 00:01:23, 40472k disk space