sbuild (Debian sbuild) 0.91.9 (05 May 2026) on carme.larted.org.uk +==============================================================================+ | librg-utils-perl 1.0.43-9 (amd64) Sun, 28 Jun 2026 23:12:51 +0000 | +==============================================================================+ Package: librg-utils-perl Version: 1.0.43-9 Source Version: 1.0.43-9 Distribution: perl-5.44-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sun, 28 Jun 2026 23:12:52 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup librg-utils-perl_1.0.43-9 perl-5.44-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup librg-utils-perl_1.0.43-9 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sun, 28 Jun 2026 23:12:52 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Get:2 http://deb.debian.org/debian unstable InRelease [193 kB] Get:3 http://deb.debian.org/debian sid InRelease [193 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-06-28-2000.43-F-2026-06-28-2000.43.pdiff [76.7 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-06-28-2000.43-F-2026-06-28-2000.43.pdiff [76.7 kB] Get:6 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:7 http://deb.debian.org/debian sid/main Sources T-2026-06-28-2000.43-F-2026-06-28-2000.43.pdiff [31.2 kB] Get:7 http://deb.debian.org/debian sid/main Sources T-2026-06-28-2000.43-F-2026-06-28-2000.43.pdiff [31.2 kB] Fetched 621 kB in 7s (87.6 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sun, 28 Jun 2026 23:13:00 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/librg-utils-perl_1.0.43-9.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 28 Jun 2026 23:13:01 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), perl, libmodule-build-perl, debhelper, build-essential Filtered Build-Depends: debhelper-compat (= 13), perl, libmodule-build-perl, debhelper, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/librg-utils-perl-lxqGM1/resolver-d0F4w9/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/librg-utils-perl-lxqGM1/resolver-d0F4w9/apt_archive ./ InRelease Get:2 copy:/build/librg-utils-perl-lxqGM1/resolver-d0F4w9/apt_archive ./ Release [609 B] Ign:3 copy:/build/librg-utils-perl-lxqGM1/resolver-d0F4w9/apt_archive ./ Release.gpg Get:4 copy:/build/librg-utils-perl-lxqGM1/resolver-d0F4w9/apt_archive ./ Sources [639 B] Get:5 copy:/build/librg-utils-perl-lxqGM1/resolver-d0F4w9/apt_archive ./ Packages [678 B] Fetched 1926 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libmodule-build-perl libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any libarchive-cpio-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libmodule-build-perl libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 MB of archives. After this operation, 54.9 MB of additional disk space will be used. Get:1 copy:/build/librg-utils-perl-lxqGM1/resolver-d0F4w9/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [872 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-1 [332 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.2-1 [100.0 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-1 [820 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.2 [77.1 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-1 [2660 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.2 [933 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libmodule-build-perl all 0.423400-3 [234 kB] Preconfiguring packages ... Fetched 12.1 MB in 0s (118 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 14525 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-1_amd64.deb ... Unpacking gettext-base (1.0-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.24.1-1_amd64.deb ... Unpacking groff-base (1.24.1-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.42.2-1_amd64.deb ... Unpacking bsdextrautils (2.42.2-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-3) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.73-2_all.deb ... Unpacking autoconf (2.73-2) ... Selecting previously unselected package autotools-dev. 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Unpacking gettext (1.0-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.22_all.deb ... Unpacking po-debconf (1.0.22) ... Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_14.2_all.deb ... Unpacking debhelper (14.2) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../28-libmodule-build-perl_0.423400-3_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../29-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up bsdextrautils (2.42.2-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.3+dfsg-1) ... Setting up libdebhelper-perl (14.2) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-1) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.47-4) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up libmodule-build-perl (0.423400-3) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up autopoint (1.0-1) ... Setting up autoconf (2.73-2) ... Setting up dwz (0.16-4) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-1) ... Setting up libtool (2.5.4-11) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (22) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (14.2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-17) ... +------------------------------------------------------------------------------+ | Check architectures Sun, 28 Jun 2026 23:13:06 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Sun, 28 Jun 2026 23:13:06 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.46.50.20260617-1 dpkg-dev_1.23.7 g++-15_15.3.0-1 gcc-15_15.3.0-1 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 linux-libc-dev_7.0.13-1 Package versions: apt_3.3.1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-1 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.46.50.20260617-1 binutils-common_2.46.50.20260617-1 binutils-x86-64-linux-gnu_2.46.50.20260617-1 bsdextrautils_2.42.2-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.3.0-1 cpp-15-x86-64-linux-gnu_15.3.0-1 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_14.2 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-5 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.47-4 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.3.0-1 g++-15-x86-64-linux-gnu_15.3.0-1 g++-x86-64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.3.0-1 gcc-15-base_15.3.0-1 gcc-15-x86-64-linux-gnu_15.3.0-1 gcc-16-base_16.1.0-2 gcc-x86-64-linux-gnu_4:15.2.0-5+b1 gettext_1.0-1 gettext-base_1.0-1 gnupg_2.4.9-5 gnupg-l10n_2.4.9-5 gpg_2.4.9-5 gpg-agent_2.4.9-5 gpgconf_2.4.9-5 gpgsm_2.4.9-5 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libapt-pkg7.0_3.3.1 libarchive-zip-perl_1.68-1 libasan8_16.1.0-2 libassuan9_3.0.2-2+b2 libatomic1_16.1.0-2 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46.50.20260617-1 libblkid1_2.42.2-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-17 libc-dev-bin_2.42-17 libc-gconv-modules-extra_2.42-17 libc6_2.42-17 libc6-dev_2.42-17 libcap-ng0_0.9.3-1 libcc1-0_16.1.0-2 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46.50.20260617-1 libctf0_2.46.50.20260617-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.2 libdpkg-perl_1.23.7 libeatmydata1_131-2+b2 libelf1t64_0.195-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-15-dev_15.3.0-1 libgcc-s1_16.1.0-2 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.1.0-2 libgpg-error0_1.61-3 libgprofng0_2.46.50.20260617-1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.1.0-2 libidn2-0_2.3.8-5 libisl23_0.27-2 libitm1_16.1.0-2 libjansson4_2.15.0-1 libksba8_1.8.0-3 libldap2_2.6.13+dfsg-1+b1 liblsan0_16.1.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmodule-build-perl_0.423400-3 libmount1_2.42.2-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20251231-1+b1 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.2-3 libpam-modules_1.7.0-6 libpam-modules-bin_1.7.0-6 libpam-runtime_1.7.0-6 libpam0g_1.7.0-6 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-8 libperl5.44_5.44.0~rc1-1 libpipeline1_1.5.8-3 libquadmath0_16.1.0-2 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.0-2+b1 libselinux1_3.10-1 libsframe3_2.46.50.20260617-1 libsmartcols1_2.42.2-1 libsqlite3-0_3.53.3-1 libssl3t64_3.6.3-1 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 libsystemd0_261.1-2 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20251231-1+b1 libtool_2.5.4-11 libtsan2_16.1.0-2 libubsan1_16.1.0-2 libuchardet0_0.0.8-2+b2 libudev1_261.1-2 libunistring5_1.4.2-1 libuuid1_2.42.2-1 libxml2-16_2.15.3+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.0.13-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1+b1 openssl-provider-legacy_3.6.3-1 patch_2.8-2 perl_5.44.0~rc1-1 perl-base_5.44.0~rc1-1 perl-modules-5.40_5.40.1-8 perl-modules-5.44_5.44.0~rc1-1 pinentry-curses_1.3.2-4 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.4.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 util-linux_2.42.2-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sun, 28 Jun 2026 23:13:06 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: librg-utils-perl Binary: librg-utils-perl Architecture: all Version: 1.0.43-9 Maintainer: Debian Med Packaging Team Uploaders: Guy Yachdav , Laszlo Kajan , Andreas Tille Homepage: https://predictprotein.org/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/librg-utils-perl Vcs-Git: https://salsa.debian.org/med-team/librg-utils-perl.git Build-Depends: debhelper-compat (= 13), perl, libmodule-build-perl, debhelper Package-List: librg-utils-perl deb perl optional arch=all Checksums-Sha1: 7f502f36e38414d7046ad9295c0e6c88c09d34f9 222433 librg-utils-perl_1.0.43.orig.tar.gz 5ce64da62010d10dc0a5ab415e383f3de88d3f1f 4512 librg-utils-perl_1.0.43-9.debian.tar.xz Checksums-Sha256: 961dda0196688e156a0702ff4609067a3454199ee1e537a5b9229ebe9310a260 222433 librg-utils-perl_1.0.43.orig.tar.gz 550c94bebd8286bf56d67ab3409b1a31560b63aeb8a1bf46d2ca05a42b9c0926 4512 librg-utils-perl_1.0.43-9.debian.tar.xz Files: 72955ad3760af32cac8061c198cfff96 222433 librg-utils-perl_1.0.43.orig.tar.gz 55094e21677f3e4eb2f4954bee9f7c8f 4512 librg-utils-perl_1.0.43-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdi+DARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF1vQ/8CTnmzK0lcFxqlVuCrsSFKBU96fVefyDI yP6HUkWulVHXDcSedz93j5KEN2Lg8Oyrr3I8pCuOKEpCx1O5xUXFqIfYk9nA6tyc HUiD/qT9TtzmBV9+Z8k+X0gjQlPBpI0xWdvDo3x28IeL0h1bwvfpqktJ/DspW2sh n3emo3EKUocOjeQKeeLXGmEZe6vz/eHqdMDtHXZQyvvA27Fe/I2hKNjBQX2eLnyF ef0Hq9F/7p7+fv8VK8/dPZzS+61WEGElsYMmCi5HKZaDQNPGK/qYvPOyN2VfpjSc okV6My+DE6GxDn2AyLllIKBh5CjyiDCCyGpliIbutp7pZcOIjaX0FiaZ5vt1uph1 Xsob9SH+LiMpmagv2Mp7K+W+keb3YTUvSPCbeuAz+3mpQiHPwFO9FMerhpnqemGW MIm6/kAeHA6kjIizC2xztKfsJtpaKG5VRHpEGNUdKTk3X6iKpHBnxmtcZi47MhPH tOjVrLC2njwef7jY4wzX/oUP73K8zD6trGicc/9TG4QPo2rk8m0ly/lmtUaCXp42 xvtIPD0yRgFICkR54/lcFxJ7qzEAkD46l54M0bdNzh3P1m75lFWyL2+M6zePhrGj s1JL/wq+rKb9Wnx/Zlq0a6X3UCBiv/ysLSo6Cmwh9VvtSviRpo66Zo3aMlz/7vv9 gkfu56cqK4g= =FC9q -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./librg-utils-perl_1.0.43-9.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./librg-utils-perl_1.0.43-9.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting librg-utils-perl in /build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43 dpkg-source: info: unpacking librg-utils-perl_1.0.43.orig.tar.gz dpkg-source: info: unpacking librg-utils-perl_1.0.43-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-defined-for-arrays.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Sun, 28 Jun 2026 23:13:06 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network librg-utils-perl_1.0.43-9 perl-5.44-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network librg-utils-perl_1.0.43-9 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43 SCHROOT_ALIAS_NAME=perl-5.44-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.44-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.44-amd64-debomatic-0d744045-8b38-4b8e-8247-615403fc2107 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package librg-utils-perl dpkg-buildpackage: info: source version 1.0.43-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' rm -rf autom4te.cache blib Build dh_auto_clean if [ -f Makefile ] ; then make distclean ; fi if [ -f Makefile.in.bak ] ; then mv Makefile.in.bak Makefile.in ; fi if [ -f configure.bak ] ; then mv configure.bak configure ; fi make[1]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building librg-utils-perl using existing ../librg-utils-perl_1.0.43.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building librg-utils-perl in ../librg-utils-perl_1.0.43-9.debian.tar.xz dpkg-source: info: building librg-utils-perl in ../librg-utils-perl_1.0.43-9.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: no obvious need to run autopoint autoreconf: running: aclocal --force autoreconf: configure.ac: tracing autoreconf: configure.ac: not using Libtool autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: configure.ac: no need to run autopoint (confirmed) autoreconf: running: /usr/bin/autoconf --force autoreconf: configure.ac: not running autoheader: no config headers autoreconf: running: automake --add-missing --copy --force-missing Makefile.am:27: warning: '%'-style pattern rules are a GNU make extension autoreconf: configure.ac: not running make: --make not given autoreconf: Leaving directory '.' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' cp -a Makefile.in Makefile.in.bak cp -a configure configure.bak dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1002' is supported by ustar format... yes checking whether GID '110' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Build.PL config.status: creating librg-utils-perl.spec config.status: creating lib/Makefile config.status: creating lib/RG/Makefile config.status: creating lib/RG/Utils/Makefile config.status: creating mat/Makefile make[1]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' dh_auto_build make -j2 make[1]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' Making all in lib make[2]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' Making all in RG make[3]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' Making all in Utils make[4]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG/Utils' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG/Utils' make[4]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[3]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[3]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' make[2]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' Making all in mat make[2]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/mat' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/mat' make[2]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' sed -e 's|__pkgdatadir__|/usr/share/librg-utils-perl|g;s|__sysconfdir__|/etc|g;s|__bindir__|/usr/bin|g;s|__VERSION__|1.0.43|g' "dbSwiss" | \ pod2man -c 'User Commands' -r "1.0.43" -name DBSWISS > "dbSwiss.1" perl Build.PL installdirs=vendor && perl Build manifest && perl Build && touch build-stamp Can't find dist packages without a MANIFEST file Run 'Build manifest' to generate one WARNING: Possible missing or corrupt 'MANIFEST' file. Nothing to enter for 'provides' field in metafile. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'librg-utils-perl' version '1.0.43' File 'MANIFEST.SKIP' does not exist: Creating a temporary 'MANIFEST.SKIP' Added to MANIFEST: .pc/.quilt_patches Added to MANIFEST: .pc/.quilt_series Added to MANIFEST: .pc/.version Added to MANIFEST: .pc/applied-patches Added to MANIFEST: .pc/remove-defined-for-arrays.patch/lib/RG/Utils/Conv_hssp2saf.pm Added to MANIFEST: .pc/remove-defined-for-arrays.patch/lib/RG/Utils/Copf.pm Added to MANIFEST: .pc/remove-defined-for-arrays.patch/lib/RG/Utils/Hssp_filter.pm Added to MANIFEST: aclocal.m4 Added to MANIFEST: AUTHORS Added to MANIFEST: autom4te.cache/output.0 Added to MANIFEST: autom4te.cache/output.1 Added to MANIFEST: autom4te.cache/output.2 Added to MANIFEST: autom4te.cache/requests Added to MANIFEST: autom4te.cache/traces.0 Added to MANIFEST: autom4te.cache/traces.1 Added to MANIFEST: autom4te.cache/traces.2 Added to MANIFEST: blast2saf.pl Added to MANIFEST: blastpgp_to_saf.pl Added to MANIFEST: Build.PL Added to MANIFEST: Build.PL.in Added to MANIFEST: ChangeLog Added to MANIFEST: config.log Added to MANIFEST: config.status Added to MANIFEST: configure Added to MANIFEST: configure.ac Added to MANIFEST: conv_hssp2saf.pl Added to MANIFEST: copf.pl Added to MANIFEST: COPYING Added to MANIFEST: dbSwiss Added to MANIFEST: dbSwiss.1 Added to MANIFEST: debian/autoreconf.after Added to MANIFEST: debian/autoreconf.before Added to MANIFEST: debian/changelog Added to MANIFEST: debian/clean Added to MANIFEST: debian/control Added to MANIFEST: debian/copyright Added to MANIFEST: debian/librg-utils-perl.debhelper.log Added to MANIFEST: debian/patches/remove-defined-for-arrays.patch Added to MANIFEST: debian/patches/series Added to MANIFEST: debian/README.Debian Added to MANIFEST: debian/rules Added to MANIFEST: debian/salsa-ci.yml Added to MANIFEST: debian/source/format Added to MANIFEST: debian/upstream/metadata Added to MANIFEST: debian/watch Added to MANIFEST: hssp_filter.pl Added to MANIFEST: INSTALL Added to MANIFEST: install-sh Added to MANIFEST: lib/Makefile.am Added to MANIFEST: lib/Makefile.in Added to MANIFEST: lib/RG/Makefile.am Added to MANIFEST: lib/RG/Makefile.in Added to MANIFEST: lib/RG/Utils/Conv_hssp2saf.pm Added to MANIFEST: lib/RG/Utils/Copf.pm Added to MANIFEST: lib/RG/Utils/Hssp_filter.pm Added to MANIFEST: lib/RG/Utils/Makefile.am Added to MANIFEST: lib/RG/Utils/Makefile.in Added to MANIFEST: librg-utils-perl.spec Added to MANIFEST: librg-utils-perl.spec.in Added to MANIFEST: Makefile.am Added to MANIFEST: Makefile.in Added to MANIFEST: MANIFEST Added to MANIFEST: mat/Blast_blosum62.metric Added to MANIFEST: mat/Makefile.am Added to MANIFEST: mat/Makefile.in Added to MANIFEST: mat/Maxhom_Blosum.metric Added to MANIFEST: mat/Maxhom_GCG.metric Added to MANIFEST: mat/Maxhom_McLachlan.metric Added to MANIFEST: mat/Maxhom_Sec_Struc.metric Added to MANIFEST: mat/Maxhom_Struc_IO.metric Added to MANIFEST: missing Added to MANIFEST: NEWS Added to MANIFEST: README Added to MANIFEST: safFilterRed.pl Building librg-utils-perl make[2]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' make[1]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' dh_auto_test make -j2 check TESTSUITEFLAGS="-j2 --verbose" VERBOSE=1 make[1]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' Making check in lib make[2]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' Making check in RG make[3]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' Making check in Utils make[4]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG/Utils' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG/Utils' make[4]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[3]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[3]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' make[2]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' Making check in mat make[2]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/mat' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/mat' make[2]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' make[1]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' /usr/bin/make DESTDIR=/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl install make[2]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' Making install in lib make[3]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' Making install in RG make[4]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' Making install in Utils make[5]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG/Utils' make[6]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG/Utils' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG/Utils' make[5]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG/Utils' make[5]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[6]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[5]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[4]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib/RG' make[4]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' make[5]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' make[4]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' make[3]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/lib' Making install in mat make[3]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/mat' make[4]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/mat' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/librg-utils-perl/mat' /usr/bin/install -c -m 644 ./Blast_blosum62.metric ./Maxhom_Blosum.metric ./Maxhom_GCG.metric ./Maxhom_McLachlan.metric ./Maxhom_Sec_Struc.metric ./Maxhom_Struc_IO.metric '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/librg-utils-perl/mat' make[4]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/mat' make[3]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/mat' make[3]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' make[4]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' make[4]: Nothing to be done for 'install-exec-am'. perl Build install destdir=/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl create_packlist=0 Building librg-utils-perl Installing /build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/perl5/RG/Utils/Conv_hssp2saf.pm Installing /build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/perl5/RG/Utils/Copf.pm Installing /build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/perl5/RG/Utils/Hssp_filter.pm Installing /build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/man/man3/RG::Utils::Hssp_filter.3pm Installing /build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/man/man3/RG::Utils::Conv_hssp2saf.3pm Installing /build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/man/man3/RG::Utils::Copf.3pm /usr/bin/mkdir -p '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/librg-utils-perl' /usr/bin/install -c blast2saf.pl blastpgp_to_saf.pl conv_hssp2saf.pl copf.pl dbSwiss hssp_filter.pl safFilterRed.pl '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/librg-utils-perl' /usr/bin/mkdir -p '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/man/man1' /usr/bin/install -c -m 644 dbSwiss.1 '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/man/man1' /usr/bin/mkdir -p '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/man/man3' /usr/bin/make install-data-hook make[5]: Entering directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' for f in "/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/librg-utils-perl/copf.pl" "/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43/debian/librg-utils-perl/usr/share/librg-utils-perl/hssp_filter.pl"; do \ sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/librg-utils-perl|g;s|__pkgdatadir__|/usr/share/librg-utils-perl|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.43|g;' "$f"; \ done make[5]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' make[4]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' make[3]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' make[2]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' make[1]: Leaving directory '/build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'librg-utils-perl' in '../librg-utils-perl_1.0.43-9_all.deb'. dpkg-genbuildinfo -O../librg-utils-perl_1.0.43-9_amd64.buildinfo dpkg-genchanges -O../librg-utils-perl_1.0.43-9_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2026-06-28T23:13:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 28 Jun 2026 23:13:16 +0000 | +------------------------------------------------------------------------------+ librg-utils-perl_1.0.43-9_amd64.changes: ---------------------------------------- Format: 1.8 Date: Wed, 18 Dec 2024 17:26:28 +0100 Source: librg-utils-perl Binary: librg-utils-perl Architecture: source all Version: 1.0.43-9 Distribution: perl-5.44-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: librg-utils-perl - parsers and format conversion utilities used by (e.g.) profphd Closes: 1045341 1049488 Changes: librg-utils-perl (1.0.43-9) unstable; urgency=medium . * Fix clean target Closes: #1045341, #1049488 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 9fb200ca1b21895f47d434dca456d62f2d0e804a 1223 librg-utils-perl_1.0.43-9.dsc 5ce64da62010d10dc0a5ab415e383f3de88d3f1f 4512 librg-utils-perl_1.0.43-9.debian.tar.xz cbc6c7e5dab17fde48e59bdc2062dbda5235087e 107484 librg-utils-perl_1.0.43-9_all.deb 2f8cfb45c00443b9cb48bf18605c053ca4a96776 5018 librg-utils-perl_1.0.43-9_amd64.buildinfo Checksums-Sha256: 42348066a6dd97c3b49b0088b17db3d0a48f11f8b9f10be3d637eea5d5a604b1 1223 librg-utils-perl_1.0.43-9.dsc 550c94bebd8286bf56d67ab3409b1a31560b63aeb8a1bf46d2ca05a42b9c0926 4512 librg-utils-perl_1.0.43-9.debian.tar.xz 8113f77f9df7d9f99775ffc9ccb6cc51fc0dc78725553627e563f85f9137e5c4 107484 librg-utils-perl_1.0.43-9_all.deb 2cfadf68d99f1ceebdb0b3894b5a6728e6c90cef341d1a720cccf6e8f96f2a7b 5018 librg-utils-perl_1.0.43-9_amd64.buildinfo Files: 4a34d9ed0ace20e21df7a1043eecf90f 1223 perl optional librg-utils-perl_1.0.43-9.dsc 55094e21677f3e4eb2f4954bee9f7c8f 4512 perl optional librg-utils-perl_1.0.43-9.debian.tar.xz 574cd17d50864245a0e02bdb5bb48f1b 107484 perl optional librg-utils-perl_1.0.43-9_all.deb 6f67b6e8135b51c4e8b814d847e11b58 5018 perl optional librg-utils-perl_1.0.43-9_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Sun, 28 Jun 2026 23:13:17 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: librg-utils-perl Binary: librg-utils-perl Architecture: all source Version: 1.0.43-9 Checksums-Md5: 4a34d9ed0ace20e21df7a1043eecf90f 1223 librg-utils-perl_1.0.43-9.dsc 574cd17d50864245a0e02bdb5bb48f1b 107484 librg-utils-perl_1.0.43-9_all.deb Checksums-Sha1: 9fb200ca1b21895f47d434dca456d62f2d0e804a 1223 librg-utils-perl_1.0.43-9.dsc cbc6c7e5dab17fde48e59bdc2062dbda5235087e 107484 librg-utils-perl_1.0.43-9_all.deb Checksums-Sha256: 42348066a6dd97c3b49b0088b17db3d0a48f11f8b9f10be3d637eea5d5a604b1 1223 librg-utils-perl_1.0.43-9.dsc 8113f77f9df7d9f99775ffc9ccb6cc51fc0dc78725553627e563f85f9137e5c4 107484 librg-utils-perl_1.0.43-9_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 28 Jun 2026 23:13:16 +0000 Build-Path: /build/librg-utils-perl-lxqGM1/librg-utils-perl-1.0.43 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-1), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3), binutils (= 2.46.50.20260617-1), binutils-common (= 2.46.50.20260617-1), binutils-x86-64-linux-gnu (= 2.46.50.20260617-1), bsdextrautils (= 2.42.2-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.3.0-1), cpp-15-x86-64-linux-gnu (= 15.3.0-1), cpp-x86-64-linux-gnu (= 4:15.2.0-5+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.2), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.47-4), findutils (= 4.10.0-4), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.3.0-1), g++-15-x86-64-linux-gnu (= 15.3.0-1), g++-x86-64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.3.0-1), gcc-15-base (= 15.3.0-1), gcc-15-x86-64-linux-gnu (= 15.3.0-1), gcc-16-base (= 16.1.0-2), gcc-x86-64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 1.0-1), gettext-base (= 1.0-1), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.1.0-2), libatomic1 (= 16.1.0-2), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46.50.20260617-1), libblkid1 (= 2.42.2-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-17), libc-dev-bin (= 2.42-17), libc-gconv-modules-extra (= 2.42-17), libc6 (= 2.42-17), libc6-dev (= 2.42-17), libcap-ng0 (= 0.9.3-1), libcc1-0 (= 16.1.0-2), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46.50.20260617-1), libctf0 (= 2.46.50.20260617-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.2), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-15-dev (= 15.3.0-1), libgcc-s1 (= 16.1.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.1.0-2), libgprofng0 (= 2.46.50.20260617-1), libhwasan0 (= 16.1.0-2), libisl23 (= 0.27-2), libitm1 (= 16.1.0-2), libjansson4 (= 2.15.0-1), liblsan0 (= 16.1.0-2), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmodule-build-perl (= 0.423400-3), libmount1 (= 2.42.2-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-6), libpam-modules-bin (= 1.7.0-6), libpam-runtime (= 1.7.0-6), libpam0g (= 1.7.0-6), libpcre2-8-0 (= 10.46-1+b2), libperl5.44 (= 5.44.0~rc1-1), libpipeline1 (= 1.5.8-3), libquadmath0 (= 16.1.0-2), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.10-1), libsframe3 (= 2.46.50.20260617-1), libsmartcols1 (= 2.42.2-1), libssl3t64 (= 3.6.3-1), libstdc++-15-dev (= 15.3.0-1), libstdc++6 (= 16.1.0-2), libsystemd0 (= 261.1-2), libtinfo6 (= 6.6+20251231-1+b1), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-2), libubsan1 (= 16.1.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 261.1-2), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-1), libxml2-16 (= 2.15.3+dfsg-1), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 7.0.13-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1+b1), openssl-provider-legacy (= 3.6.3-1), patch (= 2.8-2), perl (= 5.44.0~rc1-1), perl-base (= 5.44.0~rc1-1), perl-modules-5.44 (= 5.44.0~rc1-1), po-debconf (= 1.0.22), rpcsvc-proto (= 1.4.4-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), util-linux (= 2.42.2-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1734539188" +------------------------------------------------------------------------------+ | Package contents Sun, 28 Jun 2026 23:13:17 +0000 | +------------------------------------------------------------------------------+ librg-utils-perl_1.0.43-9_all.deb --------------------------------- new Debian package, version 2.0. size 107484 bytes: control archive=1400 bytes. 769 bytes, 26 lines control 1889 bytes, 24 lines md5sums Package: librg-utils-perl Version: 1.0.43-9 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 694 Depends: perl:any, liblist-moreutils-perl, profphd-utils Section: perl Priority: optional Homepage: https://predictprotein.org/ Description: parsers and format conversion utilities used by (e.g.) profphd This package contributes to the PredictProtein server for the automated structural annotation of protein sequences. It features as series of conversion tools like: . * blast2saf.pl * blastpgp_to_saf.pl * conv_hssp2saf.pl * copf.pl * hssp_filter.pl * safFilterRed.pl . which are supported by the modules: . * RG:Utils::Conv_hssp2saf * RG:Utils::Copf * RG:Utils::Hssp_filter drwxr-xr-x root/root 0 2024-12-18 16:26 ./ drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/ drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/ drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/doc/librg-utils-perl/ -rw-r--r-- root/root 235 2024-12-18 16:26 ./usr/share/doc/librg-utils-perl/README.Debian -rw-r--r-- root/root 641 2024-12-18 16:26 ./usr/share/doc/librg-utils-perl/changelog.Debian.gz -rw-r--r-- root/root 2208 2011-10-28 20:10 ./usr/share/doc/librg-utils-perl/changelog.gz -rw-r--r-- root/root 1816 2024-12-18 16:26 ./usr/share/doc/librg-utils-perl/copyright drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/librg-utils-perl/ -rwxr-xr-x root/root 28315 2024-12-18 16:26 ./usr/share/librg-utils-perl/blast2saf.pl -rwxr-xr-x root/root 19203 2024-12-18 16:26 ./usr/share/librg-utils-perl/blastpgp_to_saf.pl -rwxr-xr-x root/root 687 2024-12-18 16:26 ./usr/share/librg-utils-perl/conv_hssp2saf.pl -rwxr-xr-x root/root 792 2024-12-18 16:26 ./usr/share/librg-utils-perl/copf.pl -rwxr-xr-x root/root 4673 2024-12-18 16:26 ./usr/share/librg-utils-perl/dbSwiss -rwxr-xr-x root/root 799 2024-12-18 16:26 ./usr/share/librg-utils-perl/hssp_filter.pl drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/librg-utils-perl/mat/ -rw-r--r-- root/root 2122 2024-12-18 16:26 ./usr/share/librg-utils-perl/mat/Blast_blosum62.metric -rw-r--r-- root/root 4065 2024-12-18 16:26 ./usr/share/librg-utils-perl/mat/Maxhom_Blosum.metric -rw-r--r-- root/root 4337 2024-12-18 16:26 ./usr/share/librg-utils-perl/mat/Maxhom_GCG.metric -rw-r--r-- root/root 3902 2024-12-18 16:26 ./usr/share/librg-utils-perl/mat/Maxhom_McLachlan.metric -rw-r--r-- root/root 3726 2024-12-18 16:26 ./usr/share/librg-utils-perl/mat/Maxhom_Sec_Struc.metric -rw-r--r-- root/root 21174 2024-12-18 16:26 ./usr/share/librg-utils-perl/mat/Maxhom_Struc_IO.metric -rwxr-xr-x root/root 20165 2024-12-18 16:26 ./usr/share/librg-utils-perl/safFilterRed.pl drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/man/ drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/man/man1/ -rw-r--r-- root/root 1573 2024-12-18 16:26 ./usr/share/man/man1/dbSwiss.1.gz drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/man/man3/ -rw-r--r-- root/root 1229 2024-12-18 16:26 ./usr/share/man/man3/RG::Utils::Conv_hssp2saf.3pm.gz -rw-r--r-- root/root 2105 2024-12-18 16:26 ./usr/share/man/man3/RG::Utils::Copf.3pm.gz -rw-r--r-- root/root 1518 2024-12-18 16:26 ./usr/share/man/man3/RG::Utils::Hssp_filter.3pm.gz drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/perl5/ drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/perl5/RG/ drwxr-xr-x root/root 0 2024-12-18 16:26 ./usr/share/perl5/RG/Utils/ -rw-r--r-- root/root 48283 2024-12-18 16:26 ./usr/share/perl5/RG/Utils/Conv_hssp2saf.pm -rw-r--r-- root/root 374759 2024-12-18 16:26 ./usr/share/perl5/RG/Utils/Copf.pm -rw-r--r-- root/root 137018 2024-12-18 16:26 ./usr/share/perl5/RG/Utils/Hssp_filter.pm +------------------------------------------------------------------------------+ | Post Build Sun, 28 Jun 2026 23:13:17 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 28 Jun 2026 23:13:17 +0000 | +------------------------------------------------------------------------------+ Purging /build/librg-utils-perl-lxqGM1 Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 28 Jun 2026 23:13:17 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 4204 Build-Time: 9 Distribution: perl-5.44-throwaway Host Architecture: amd64 Install-Time: 5 Job: /srv/debomatic/incoming/librg-utils-perl_1.0.43-9.dsc Machine Architecture: amd64 Package: librg-utils-perl Package-Time: 25 Source-Version: 1.0.43-9 Space: 4204 Status: successful Version: 1.0.43-9 -------------------------------------------------------------------------------- Finished at 2026-06-28T23:13:16Z Build needed 00:00:25, 4204k disk space