sbuild (Debian sbuild) 0.91.9 (05 May 2026) on carme.larted.org.uk +==============================================================================+ | estscan 3.0.3-6 (amd64) Sun, 28 Jun 2026 06:04:18 +0000 | +==============================================================================+ Package: estscan Version: 3.0.3-6 Source Version: 3.0.3-6 Distribution: perl-5.44-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sun, 28 Jun 2026 06:04:19 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup estscan_3.0.3-6 perl-5.44-throwaway amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup estscan_3.0.3-6 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sun, 28 Jun 2026 06:04:19 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://deb.debian.org/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sun, 28 Jun 2026 06:04:21 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/estscan_3.0.3-6.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 28 Jun 2026 06:04:22 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), gfortran, build-essential Filtered Build-Depends: debhelper-compat (= 13), gfortran, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/estscan-VmvBf1/resolver-aTgoa0/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/estscan-VmvBf1/resolver-aTgoa0/apt_archive ./ InRelease Get:2 copy:/build/estscan-VmvBf1/resolver-aTgoa0/apt_archive ./ Release [609 B] Ign:3 copy:/build/estscan-VmvBf1/resolver-aTgoa0/apt_archive ./ Release.gpg Get:4 copy:/build/estscan-VmvBf1/resolver-aTgoa0/apt_archive ./ Sources [610 B] Get:5 copy:/build/estscan-VmvBf1/resolver-aTgoa0/apt_archive ./ Packages [649 B] Fetched 1868 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgfortran-15-dev libgfortran5 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n gfortran-multilib gfortran-doc gfortran-15-multilib gfortran-15-doc libcoarrays-dev groff libtool-doc m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgfortran-15-dev libgfortran5 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 26.4 MB of archives. After this operation, 104 MB of additional disk space will be used. Get:1 copy:/build/estscan-VmvBf1/resolver-aTgoa0/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [860 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-1 [332 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.2-1 [100.0 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-1 [820 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.2 [77.1 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-1 [2660 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.2 [933 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.1.0-2 [877 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libgfortran-15-dev amd64 15.3.0-1 [877 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.3.0-1 [12.8 MB] Get:33 http://deb.debian.org/debian unstable/main amd64 gfortran-15 amd64 15.3.0-1 [22.2 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-5+b1 [1284 B] Get:35 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:15.2.0-5+b1 [1440 B] Preconfiguring packages ... Fetched 26.4 MB in 0s (147 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 14526 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-1_amd64.deb ... Unpacking gettext-base (1.0-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_amd64.deb ... 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Setting up libdebhelper-perl (14.2) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-1) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.47-4) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up autopoint (1.0-1) ... Setting up libgfortran5:amd64 (16.1.0-2) ... Setting up autoconf (2.73-2) ... Setting up dwz (0.16-4) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-1) ... Setting up libtool (2.5.4-11) ... Setting up libgfortran-15-dev:amd64 (15.3.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (22) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up gfortran-15-x86-64-linux-gnu (15.3.0-1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:15.2.0-5+b1) ... Setting up gfortran-15 (15.3.0-1) ... Setting up debhelper (14.2) ... Setting up gfortran (4:15.2.0-5+b1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-17) ... +------------------------------------------------------------------------------+ | Check architectures Sun, 28 Jun 2026 06:04:29 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Sun, 28 Jun 2026 06:04:29 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.46.50.20260617-1 dpkg-dev_1.23.7 g++-15_15.3.0-1 gcc-15_15.3.0-1 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 linux-libc-dev_7.0.13-1 Package versions: apt_3.3.1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-1 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.46.50.20260617-1 binutils-common_2.46.50.20260617-1 binutils-x86-64-linux-gnu_2.46.50.20260617-1 bsdextrautils_2.42.2-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.3.0-1 cpp-15-x86-64-linux-gnu_15.3.0-1 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_14.2 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-5 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.47-4 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.3.0-1 g++-15-x86-64-linux-gnu_15.3.0-1 g++-x86-64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.3.0-1 gcc-15-base_15.3.0-1 gcc-15-x86-64-linux-gnu_15.3.0-1 gcc-16-base_16.1.0-2 gcc-x86-64-linux-gnu_4:15.2.0-5+b1 gettext_1.0-1 gettext-base_1.0-1 gfortran_4:15.2.0-5+b1 gfortran-15_15.3.0-1 gfortran-15-x86-64-linux-gnu_15.3.0-1 gfortran-x86-64-linux-gnu_4:15.2.0-5+b1 gnupg_2.4.9-5 gnupg-l10n_2.4.9-5 gpg_2.4.9-5 gpg-agent_2.4.9-5 gpgconf_2.4.9-5 gpgsm_2.4.9-5 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libapt-pkg7.0_3.3.1 libarchive-zip-perl_1.68-1 libasan8_16.1.0-2 libassuan9_3.0.2-2+b2 libatomic1_16.1.0-2 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46.50.20260617-1 libblkid1_2.42.2-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-17 libc-dev-bin_2.42-17 libc-gconv-modules-extra_2.42-17 libc6_2.42-17 libc6-dev_2.42-17 libcap-ng0_0.9.3-1 libcc1-0_16.1.0-2 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46.50.20260617-1 libctf0_2.46.50.20260617-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.2 libdpkg-perl_1.23.7 libeatmydata1_131-2+b2 libelf1t64_0.195-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-15-dev_15.3.0-1 libgcc-s1_16.1.0-2 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgfortran-15-dev_15.3.0-1 libgfortran5_16.1.0-2 libgmp10_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.1.0-2 libgpg-error0_1.61-3 libgprofng0_2.46.50.20260617-1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.1.0-2 libidn2-0_2.3.8-5 libisl23_0.27-2 libitm1_16.1.0-2 libjansson4_2.15.0-1 libksba8_1.8.0-3 libldap2_2.6.13+dfsg-1+b1 liblsan0_16.1.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20251231-1+b1 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.2-3 libpam-modules_1.7.0-6 libpam-modules-bin_1.7.0-6 libpam-runtime_1.7.0-6 libpam0g_1.7.0-6 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-8 libperl5.44_5.44.0~rc1-1 libpipeline1_1.5.8-3 libquadmath0_16.1.0-2 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.0-2+b1 libselinux1_3.10-1 libsframe3_2.46.50.20260617-1 libsmartcols1_2.42.2-1 libsqlite3-0_3.53.3-1 libssl3t64_3.6.3-1 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 libsystemd0_261.1-1 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20251231-1+b1 libtool_2.5.4-11 libtsan2_16.1.0-2 libubsan1_16.1.0-2 libuchardet0_0.0.8-2+b2 libudev1_261.1-1 libunistring5_1.4.2-1 libuuid1_2.42.2-1 libxml2-16_2.15.3+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.0.13-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1+b1 openssl-provider-legacy_3.6.3-1 patch_2.8-2 perl_5.44.0~rc1-1 perl-base_5.44.0~rc1-1 perl-modules-5.40_5.40.1-8 perl-modules-5.44_5.44.0~rc1-1 pinentry-curses_1.3.2-4 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.3.0-5+b2 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 util-linux_2.42.2-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sun, 28 Jun 2026 06:04:29 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: estscan Binary: estscan Architecture: any Version: 3.0.3-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://estscan.sourceforge.net/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/estscan Vcs-Git: https://salsa.debian.org/med-team/estscan.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), gfortran Package-List: estscan deb science optional arch=any Checksums-Sha1: 8af2128aaa02c50d1d3cfa75188fac038381975c 46412 estscan_3.0.3.orig.tar.gz 18c44f0c2cfd7a5b80b37b4e45850c8707132954 12984 estscan_3.0.3-6.debian.tar.xz Checksums-Sha256: 037dc8770681ed12406a789ea292462a4ce5d89b0e906a1a3340aa4debc71e2f 46412 estscan_3.0.3.orig.tar.gz 719a8477d3ee19a64e25df2a42a3800c64a04cd6064dc6ba671a17ce3b29b54f 12984 estscan_3.0.3-6.debian.tar.xz Files: c07284ad28a38050bab0c1b71bbd055a 46412 estscan_3.0.3.orig.tar.gz e881307c55d917a1654d0b5abd8e6cc8 12984 estscan_3.0.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEaUHkUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGdDhAAmb5BpFKWO2stQ0svvHsOCvskOhUx u2JivpJEyr/Vs9PwmW5gCDwMtFBFsX+yynIkYg1nj3oO8Fwu02KCpS9j+xHfEcAY AyZL0k6fKG1FnrMM5acfewnMCRdbtdc9e8qny9VjXAHnk8e5YWt+zBNlJ0HDSSu5 AhM/UNxPhnU4EJtnlH3c07VcladpXhWcDrEgcRQCH1vZVI98K+NW9wj6KA2XOcJF hxncyDv0d+Lt0kxaSnG+sWAN5CTiXXZh04qL9/GylD0TIftqokxet/j1mVkFDodb HZkYRJns3XfM/TFbvNDNfyjrSOFySR4J5ZAlN6Zgre+9Bg3h7rUasL9EI468O7oP 2xwS4e2+g3ABgKmiaetIW719F/l+ikgtFQwjw2AgpNEpcC0omqv1cepPTkylnpPW letUzyNTepk0jLYTI2TZcvWf2ZzaIhn8YicSReOTrGktG1q4IwPgObNHDuR/Bj12 BoOziCah87VlcteMRNcrm9vANjdCr3rOF2gsVrwPaEnb6N3SLqeFbSIS/FTup43u R5p4qcNxk/aoCermHNpvqEPCxgMQJ8FnqORp0S5D1eXBX+LTxJroYR4tTOx4zMyd OGwRErhYstnbCwUvTFAqkTeklIMJ12UQEDDslAIGsO6Wo1MAkNCJaiiLeqtEpzts EVDTDeIealY46uI= =+cXO -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./estscan_3.0.3-6.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./estscan_3.0.3-6.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting estscan in /build/estscan-VmvBf1/estscan-3.0.3 dpkg-source: info: unpacking estscan_3.0.3.orig.tar.gz dpkg-source: info: unpacking estscan_3.0.3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makfile.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Sun, 28 Jun 2026 06:04:30 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network estscan_3.0.3-6 perl-5.44-throwaway amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network estscan_3.0.3-6 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/estscan-VmvBf1/estscan-3.0.3 SCHROOT_ALIAS_NAME=perl-5.44-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.44-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.44-amd64-debomatic-c2e32c39-b569-4b55-bcbc-218330b8757a SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package estscan dpkg-buildpackage: info: source version 3.0.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Shruti Sridhar dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j2 clean make[1]: Entering directory '/build/estscan-VmvBf1/estscan-3.0.3' \rm -f *~ maskred makesmat estscan winsegshuffle *.o make[1]: Leaving directory '/build/estscan-VmvBf1/estscan-3.0.3' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building estscan using existing ../estscan_3.0.3.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building estscan in ../estscan_3.0.3-6.debian.tar.xz dpkg-source: info: building estscan in ../estscan_3.0.3-6.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j2 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/estscan-VmvBf1/estscan-3.0.3' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/estscan-VmvBf1/estscan-3.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -c maskred.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/estscan-VmvBf1/estscan-3.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -c makesmat.c maskred.c:124:33: warning: ‘bitValue’ is static but used in inline function ‘testBit’ which is not static 124 | { return(bitField[index >> 3] & bitValue[index & 7]); } | ^~~~~~~~ maskred.c:121:27: warning: ‘bitValue’ is static but used in inline function ‘setBit’ which is not static 121 | { bitField[index >> 3] |= bitValue[index & 7]; } | ^~~~~~~~ maskred.c: In function ‘mask_file’: maskred.c:203:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 203 | fgets(buf, 1024, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ maskred.c:210:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 210 | fgets(buf, 1024, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ maskred.c: At top level: maskred.c:161:13: warning: ‘printTuple’ defined but not used [-Wunused-function] 161 | static void printTuple(unsigned long index, int len) | ^~~~~~~~~~ makesmat.c: In function ‘count_tuples’: makesmat.c:306:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fgets(buf, 1024, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ makesmat.c:325:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 325 | fgets(buf, 1024, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/estscan-VmvBf1/estscan-3.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -c estscan.c estscan.c: In function ‘Compute’: estscan.c:784:38: warning: variable ‘tmpScore’ set but not used [-Wunused-but-set-variable] 784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore; | ^~~~~~~~ estscan.c:784:29: warning: variable ‘tmpPrev’ set but not used [-Wunused-but-set-variable] 784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore; | ^~~~~~~ gfortran -g -O2 -ffile-prefix-map=/build/estscan-VmvBf1/estscan-3.0.3=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c winsegshuffle.f winsegshuffle.f:121:72: 121 | IF(J.GT.97.OR.J.LT.1) PAUSE | 1 Warning: Deleted feature: PAUSE statement at (1) gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o maskred maskred.o -lm gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o makesmat makesmat.o -lm gfortran -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o winsegshuffle winsegshuffle.o -lm gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o estscan estscan.o -lm make[1]: Leaving directory '/build/estscan-VmvBf1/estscan-3.0.3' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/estscan/ debian/rules override_dh_install make[1]: Entering directory '/build/estscan-VmvBf1/estscan-3.0.3' dh_install set -e ; \ for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/estscan-VmvBf1/estscan-3.0.3' dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dwz: debian/estscan/usr/bin/estscan: DWARF compression not beneficial - old size 21943 new size 21946 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/estscan/usr/bin/winsegshuffle was not linked against libgcc_s.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'estscan-dbgsym' in '../estscan-dbgsym_3.0.3-6_amd64.deb'. dpkg-deb: building package 'estscan' in '../estscan_3.0.3-6_amd64.deb'. dpkg-genbuildinfo -O../estscan_3.0.3-6_amd64.buildinfo dpkg-genchanges -O../estscan_3.0.3-6_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2026-06-28T06:04:36Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 28 Jun 2026 06:04:36 +0000 | +------------------------------------------------------------------------------+ estscan_3.0.3-6_amd64.changes: ------------------------------ Format: 1.8 Date: Mon, 16 Aug 2021 17:16:42 +0530 Source: estscan Binary: estscan estscan-dbgsym Architecture: source amd64 Version: 3.0.3-6 Distribution: perl-5.44-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Shruti Sridhar Description: estscan - ORF-independent detector of coding DNA sequences Changes: estscan (3.0.3-6) unstable; urgency=medium . [ Shruti Sridhar ] * Team Upload. * Add test data * Add autopkgtests * Install docs Checksums-Sha1: f927b0e9e2952612ff594632b338b36fe86ce227 1051 estscan_3.0.3-6.dsc 60feb23a2fcb0cb70fade2dad36bf251525ed1c6 12992 estscan_3.0.3-6.debian.tar.xz 4943626519b4c6ac18167da2683f21c41d8f381e 61068 estscan-dbgsym_3.0.3-6_amd64.deb 3e5ec1dcd776c2075c6457d8a9a302fa00ab21c3 5369 estscan_3.0.3-6_amd64.buildinfo ef61be1defff595ac73da2bfe30c81be30d7f6d1 54500 estscan_3.0.3-6_amd64.deb Checksums-Sha256: e7a10daa5f5f1334f6320c93713aa5f42334087abf43beaea30a51e6f0bb7c04 1051 estscan_3.0.3-6.dsc f91dd1409d9ba0672aec3cb984d32379fc86eafd445975930d21160917067b55 12992 estscan_3.0.3-6.debian.tar.xz cdbaed521a709f75839fedca28e339f6655a3eb35da5182ade20e85126cc0840 61068 estscan-dbgsym_3.0.3-6_amd64.deb 50ddbf2f11060c3b459038df4268a70b95404e0b9893fb3ff69b73164e048d50 5369 estscan_3.0.3-6_amd64.buildinfo 90b2c061691030c0230862c8561be7538e471576d7c36265dfba49484541a1a9 54500 estscan_3.0.3-6_amd64.deb Files: 653473d121ba2a0c7f6dbf7d5eeaee8d 1051 science optional estscan_3.0.3-6.dsc 330fe6d86e58f709d2ea3dd799952ce9 12992 science optional estscan_3.0.3-6.debian.tar.xz 7aa1239494348c97bc5930f253f2f9a9 61068 debug optional estscan-dbgsym_3.0.3-6_amd64.deb 2611a8c9b0ac1403d00669aa45516ab8 5369 science optional estscan_3.0.3-6_amd64.buildinfo 0ceb08089de206d5bc2440894c76ab95 54500 science optional estscan_3.0.3-6_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Sun, 28 Jun 2026 06:04:36 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: estscan Binary: estscan estscan-dbgsym Architecture: amd64 source Version: 3.0.3-6 Checksums-Md5: 653473d121ba2a0c7f6dbf7d5eeaee8d 1051 estscan_3.0.3-6.dsc 7aa1239494348c97bc5930f253f2f9a9 61068 estscan-dbgsym_3.0.3-6_amd64.deb 0ceb08089de206d5bc2440894c76ab95 54500 estscan_3.0.3-6_amd64.deb Checksums-Sha1: f927b0e9e2952612ff594632b338b36fe86ce227 1051 estscan_3.0.3-6.dsc 4943626519b4c6ac18167da2683f21c41d8f381e 61068 estscan-dbgsym_3.0.3-6_amd64.deb ef61be1defff595ac73da2bfe30c81be30d7f6d1 54500 estscan_3.0.3-6_amd64.deb Checksums-Sha256: e7a10daa5f5f1334f6320c93713aa5f42334087abf43beaea30a51e6f0bb7c04 1051 estscan_3.0.3-6.dsc cdbaed521a709f75839fedca28e339f6655a3eb35da5182ade20e85126cc0840 61068 estscan-dbgsym_3.0.3-6_amd64.deb 90b2c061691030c0230862c8561be7538e471576d7c36265dfba49484541a1a9 54500 estscan_3.0.3-6_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 28 Jun 2026 06:04:36 +0000 Build-Path: /build/estscan-VmvBf1/estscan-3.0.3 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-1), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3), binutils (= 2.46.50.20260617-1), binutils-common (= 2.46.50.20260617-1), binutils-x86-64-linux-gnu (= 2.46.50.20260617-1), bsdextrautils (= 2.42.2-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.3.0-1), cpp-15-x86-64-linux-gnu (= 15.3.0-1), cpp-x86-64-linux-gnu (= 4:15.2.0-5+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.2), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.47-4), findutils (= 4.10.0-4), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.3.0-1), g++-15-x86-64-linux-gnu (= 15.3.0-1), g++-x86-64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.3.0-1), gcc-15-base (= 15.3.0-1), gcc-15-x86-64-linux-gnu (= 15.3.0-1), gcc-16-base (= 16.1.0-2), gcc-x86-64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 1.0-1), gettext-base (= 1.0-1), gfortran (= 4:15.2.0-5+b1), gfortran-15 (= 15.3.0-1), gfortran-15-x86-64-linux-gnu (= 15.3.0-1), gfortran-x86-64-linux-gnu (= 4:15.2.0-5+b1), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.1.0-2), libatomic1 (= 16.1.0-2), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46.50.20260617-1), libblkid1 (= 2.42.2-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-17), libc-dev-bin (= 2.42-17), libc-gconv-modules-extra (= 2.42-17), libc6 (= 2.42-17), libc6-dev (= 2.42-17), libcap-ng0 (= 0.9.3-1), libcc1-0 (= 16.1.0-2), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46.50.20260617-1), libctf0 (= 2.46.50.20260617-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.2), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-15-dev (= 15.3.0-1), libgcc-s1 (= 16.1.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgfortran-15-dev (= 15.3.0-1), libgfortran5 (= 16.1.0-2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.1.0-2), libgprofng0 (= 2.46.50.20260617-1), libhwasan0 (= 16.1.0-2), libisl23 (= 0.27-2), libitm1 (= 16.1.0-2), libjansson4 (= 2.15.0-1), liblsan0 (= 16.1.0-2), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.2-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-6), libpam-modules-bin (= 1.7.0-6), libpam-runtime (= 1.7.0-6), libpam0g (= 1.7.0-6), libpcre2-8-0 (= 10.46-1+b2), libperl5.44 (= 5.44.0~rc1-1), libpipeline1 (= 1.5.8-3), libquadmath0 (= 16.1.0-2), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.10-1), libsframe3 (= 2.46.50.20260617-1), libsmartcols1 (= 2.42.2-1), libssl3t64 (= 3.6.3-1), libstdc++-15-dev (= 15.3.0-1), libstdc++6 (= 16.1.0-2), libsystemd0 (= 261.1-1), libtinfo6 (= 6.6+20251231-1+b1), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-2), libubsan1 (= 16.1.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 261.1-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-1), libxml2-16 (= 2.15.3+dfsg-1), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 7.0.13-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1+b1), openssl-provider-legacy (= 3.6.3-1), patch (= 2.8-2), perl (= 5.44.0~rc1-1), perl-base (= 5.44.0~rc1-1), perl-modules-5.44 (= 5.44.0~rc1-1), po-debconf (= 1.0.22), rpcsvc-proto (= 1.4.4-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), util-linux (= 2.42.2-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1629114402" +------------------------------------------------------------------------------+ | Package contents Sun, 28 Jun 2026 06:04:36 +0000 | +------------------------------------------------------------------------------+ estscan-dbgsym_3.0.3-6_amd64.deb -------------------------------- new Debian package, version 2.0. size 61068 bytes: control archive=744 bytes. 493 bytes, 12 lines control 508 bytes, 5 lines md5sums Package: estscan-dbgsym Source: estscan Version: 3.0.3-6 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 121 Depends: estscan (= 3.0.3-6) Section: debug Priority: optional Description: debug symbols for estscan Build-Ids: 0dada05f46b79be8d2b360c0db738f681bb866fb 4d4c21e46e203f1efe41f890543fb61828e3b5e0 cea43b3ea2a28e6c58b4e7476ad85d920c1229a7 e3d88225fbddf2808af64aa9abd7a8cbded7dd42 drwxr-xr-x root/root 0 2021-08-16 11:46 ./ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/0d/ -rw-r--r-- root/root 45176 2021-08-16 11:46 ./usr/lib/debug/.build-id/0d/ada05f46b79be8d2b360c0db738f681bb866fb.debug drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/4d/ -rw-r--r-- root/root 26160 2021-08-16 11:46 ./usr/lib/debug/.build-id/4d/4c21e46e203f1efe41f890543fb61828e3b5e0.debug drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/ce/ -rw-r--r-- root/root 16520 2021-08-16 11:46 ./usr/lib/debug/.build-id/ce/a43b3ea2a28e6c58b4e7476ad85d920c1229a7.debug drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/e3/ -rw-r--r-- root/root 15080 2021-08-16 11:46 ./usr/lib/debug/.build-id/e3/d88225fbddf2808af64aa9abd7a8cbded7dd42.debug drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 2784 2021-08-16 11:46 ./usr/lib/debug/.dwz/x86_64-linux-gnu/estscan.debug drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan-dbgsym -> estscan estscan_3.0.3-6_amd64.deb ------------------------- new Debian package, version 2.0. size 54500 bytes: control archive=1476 bytes. 1288 bytes, 24 lines control 934 bytes, 15 lines md5sums Package: estscan Version: 3.0.3-6 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 261 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgfortran5 (>= 8), perl:any Section: science Priority: optional Homepage: http://estscan.sourceforge.net/ Description: ORF-independent detector of coding DNA sequences ESTScan is a program that can detect coding regions in DNA sequences, even if they are of low quality. ESTScan will also detect and correct sequencing errors that lead to frameshifts. ESTScan is not a gene prediction program , nor is it an open reading frame detector. In fact, its strength lies in the fact that it does not require an open reading frame to detect a coding region. As a result, the program may miss a few translated amino acids at either the N or the C terminus, but will detect coding regions with high selectivity and sensitivity. . ESTScan takes advantages of the bias in hexanucleotide usage found in coding regions relative to non-coding regions. This bias is formalized as an inhomogeneous 3-periodic fifth-order Hidden Markov Model (HMM). Additionally, the HMM of ESTScan has been extended to allows insertions and deletions when these improve the coding region statistics. drwxr-xr-x root/root 0 2021-08-16 11:46 ./ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/bin/ -rwxr-xr-x root/root 38992 2021-08-16 11:46 ./usr/bin/estscan -rwxr-xr-x root/root 25411 2021-08-16 11:46 ./usr/bin/evaluate_model -rwxr-xr-x root/root 18833 2021-08-16 11:46 ./usr/bin/extract_EST -rwxr-xr-x root/root 16560 2021-08-16 11:46 ./usr/bin/extract_UG_EST -rwxr-xr-x root/root 22760 2021-08-16 11:46 ./usr/bin/makesmat -rwxr-xr-x root/root 14568 2021-08-16 11:46 ./usr/bin/maskred -rwxr-xr-x root/root 18178 2021-08-16 11:46 ./usr/bin/prepare_data -rwxr-xr-x root/root 18664 2021-08-16 11:46 ./usr/bin/winsegshuffle drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan/ -rw-r--r-- root/root 669 2021-08-16 11:46 ./usr/share/doc/estscan/README.test -rw-r--r-- root/root 750 2021-08-16 11:46 ./usr/share/doc/estscan/changelog.Debian.gz -rw-r--r-- root/root 6100 2021-08-16 11:46 ./usr/share/doc/estscan/copyright drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan/examples/ -rw-r--r-- root/root 59182 2021-08-16 11:46 ./usr/share/doc/estscan/examples/Dr.smat -rw-r--r-- root/root 204 2021-08-16 11:46 ./usr/share/doc/estscan/examples/sequence.fasta -rw-r--r-- root/root 381 2021-08-16 11:46 ./usr/share/doc/estscan/run-unit-test drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/perl5/ -rw-r--r-- root/root 8714 2006-12-19 16:01 ./usr/share/perl5/build_model_utils.pl +------------------------------------------------------------------------------+ | Post Build Sun, 28 Jun 2026 06:04:37 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 28 Jun 2026 06:04:37 +0000 | +------------------------------------------------------------------------------+ Purging /build/estscan-VmvBf1 Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 28 Jun 2026 06:04:39 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 1648 Build-Time: 6 Distribution: perl-5.44-throwaway Host Architecture: amd64 Install-Time: 7 Job: /srv/debomatic/incoming/estscan_3.0.3-6.dsc Machine Architecture: amd64 Package: estscan Package-Time: 18 Source-Version: 3.0.3-6 Space: 1648 Status: successful Version: 3.0.3-6 -------------------------------------------------------------------------------- Finished at 2026-06-28T06:04:36Z Build needed 00:00:18, 1648k disk space