sbuild (Debian sbuild) 0.91.9 (05 May 2026) on carme.larted.org.uk +==============================================================================+ | eigensoft 8.0.0+dfsg-2 (amd64) Sun, 28 Jun 2026 05:43:59 +0000 | +==============================================================================+ Package: eigensoft Version: 8.0.0+dfsg-2 Source Version: 8.0.0+dfsg-2 Distribution: perl-5.44-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sun, 28 Jun 2026 05:44:01 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup eigensoft_8.0.0+dfsg-2 perl-5.44-throwaway amd64 ----------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup eigensoft_8.0.0+dfsg-2 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sun, 28 Jun 2026 05:44:01 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://deb.debian.org/debian sid InRelease Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sun, 28 Jun 2026 05:44:03 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/eigensoft_8.0.0+dfsg-2.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 28 Jun 2026 05:44:04 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/eigensoft-q5Q008/resolver-f92o0p/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/eigensoft-q5Q008/resolver-f92o0p/apt_archive ./ InRelease Get:2 copy:/build/eigensoft-q5Q008/resolver-f92o0p/apt_archive ./ Release [609 B] Ign:3 copy:/build/eigensoft-q5Q008/resolver-f92o0p/apt_archive ./ Release.gpg Get:4 copy:/build/eigensoft-q5Q008/resolver-f92o0p/apt_archive ./ Sources [666 B] Get:5 copy:/build/eigensoft-q5Q008/resolver-f92o0p/apt_archive ./ Packages [705 B] Fetched 1980 B in 0s (189 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3 libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgfortran-15-dev libgfortran5 libgsl-dev libgsl28 libgslcblas0 liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1t64 libpipeline1 libtmglib-dev libtmglib3 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n gfortran-multilib gfortran-doc gfortran-15-multilib gfortran-15-doc libcoarrays-dev groff liblapack-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3 libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgfortran-15-dev libgfortran5 libgsl-dev libgsl28 libgslcblas0 liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1t64 libpipeline1 libtmglib-dev libtmglib3 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 38.0 MB of archives. After this operation, 166 MB of additional disk space will be used. Get:1 copy:/build/eigensoft-q5Q008/resolver-f92o0p/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [884 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-1 [332 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.2-1 [100.0 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-1 [820 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.2 [77.1 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-1 [2660 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.2 [933 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.1.0-2 [877 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libgfortran-15-dev amd64 15.3.0-1 [877 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.3.0-1 [12.8 MB] Get:33 http://deb.debian.org/debian unstable/main amd64 gfortran-15 amd64 15.3.0-1 [22.2 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-5+b1 [1284 B] Get:35 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:15.2.0-5+b1 [1440 B] Get:36 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7+b2 [206 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-7+b2 [219 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-6+b1 [131 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-6+b1 [1002 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libgsl-dev amd64 2.8+dfsg-6+b1 [1248 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7+b2 [2546 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7+b2 [5225 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libtmglib3 amd64 3.12.1-7+b2 [133 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 liblapacke amd64 3.12.1-7+b2 [377 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libtmglib-dev amd64 3.12.1-7+b2 [136 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 liblapacke-dev amd64 3.12.1-7+b2 [378 kB] Preconfiguring packages ... Fetched 38.0 MB in 0s (124 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 14526 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-1_amd64.deb ... Unpacking gettext-base (1.0-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_amd64.deb ... 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Setting up libxml2-16:amd64 (2.15.3+dfsg-1) ... Setting up libdebhelper-perl (14.2) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-1) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.47-4) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up libblas3:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up autopoint (1.0-1) ... Setting up libgfortran5:amd64 (16.1.0-2) ... Setting up autoconf (2.73-2) ... Setting up dwz (0.16-4) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up libgsl28:amd64 (2.8+dfsg-6+b1) ... Setting up libblas-dev:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up liblapack3:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (1.0-1) ... Setting up libgsl-dev (2.8+dfsg-6+b1) ... Setting up libtool (2.5.4-11) ... Setting up libgfortran-15-dev:amd64 (15.3.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (22) ... Setting up libtmglib3:amd64 (3.12.1-7+b2) ... Setting up liblapack-dev:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up liblapacke:amd64 (3.12.1-7+b2) ... Setting up libtmglib-dev:amd64 (3.12.1-7+b2) ... Setting up gfortran-15-x86-64-linux-gnu (15.3.0-1) ... Setting up po-debconf (1.0.22) ... Setting up liblapacke-dev:amd64 (3.12.1-7+b2) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:15.2.0-5+b1) ... Setting up gfortran-15 (15.3.0-1) ... Setting up debhelper (14.2) ... Setting up gfortran (4:15.2.0-5+b1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-17) ... +------------------------------------------------------------------------------+ | Check architectures Sun, 28 Jun 2026 05:44:12 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Sun, 28 Jun 2026 05:44:12 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.46.50.20260617-1 dpkg-dev_1.23.7 g++-15_15.3.0-1 gcc-15_15.3.0-1 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 linux-libc-dev_7.0.13-1 Package versions: apt_3.3.1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-1 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.46.50.20260617-1 binutils-common_2.46.50.20260617-1 binutils-x86-64-linux-gnu_2.46.50.20260617-1 bsdextrautils_2.42.2-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.3.0-1 cpp-15-x86-64-linux-gnu_15.3.0-1 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_14.2 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-5 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.47-4 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.3.0-1 g++-15-x86-64-linux-gnu_15.3.0-1 g++-x86-64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.3.0-1 gcc-15-base_15.3.0-1 gcc-15-x86-64-linux-gnu_15.3.0-1 gcc-16-base_16.1.0-2 gcc-x86-64-linux-gnu_4:15.2.0-5+b1 gettext_1.0-1 gettext-base_1.0-1 gfortran_4:15.2.0-5+b1 gfortran-15_15.3.0-1 gfortran-15-x86-64-linux-gnu_15.3.0-1 gfortran-x86-64-linux-gnu_4:15.2.0-5+b1 gnupg_2.4.9-5 gnupg-l10n_2.4.9-5 gpg_2.4.9-5 gpg-agent_2.4.9-5 gpgconf_2.4.9-5 gpgsm_2.4.9-5 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libapt-pkg7.0_3.3.1 libarchive-zip-perl_1.68-1 libasan8_16.1.0-2 libassuan9_3.0.2-2+b2 libatomic1_16.1.0-2 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46.50.20260617-1 libblas-dev_3.12.1-7+b2 libblas3_3.12.1-7+b2 libblkid1_2.42.2-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-17 libc-dev-bin_2.42-17 libc-gconv-modules-extra_2.42-17 libc6_2.42-17 libc6-dev_2.42-17 libcap-ng0_0.9.3-1 libcc1-0_16.1.0-2 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46.50.20260617-1 libctf0_2.46.50.20260617-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.2 libdpkg-perl_1.23.7 libeatmydata1_131-2+b2 libelf1t64_0.195-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-15-dev_15.3.0-1 libgcc-s1_16.1.0-2 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgfortran-15-dev_15.3.0-1 libgfortran5_16.1.0-2 libgmp10_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.1.0-2 libgpg-error0_1.61-3 libgprofng0_2.46.50.20260617-1 libgsl-dev_2.8+dfsg-6+b1 libgsl28_2.8+dfsg-6+b1 libgslcblas0_2.8+dfsg-6+b1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.1.0-2 libidn2-0_2.3.8-5 libisl23_0.27-2 libitm1_16.1.0-2 libjansson4_2.15.0-1 libksba8_1.8.0-3 liblapack-dev_3.12.1-7+b2 liblapack3_3.12.1-7+b2 liblapacke_3.12.1-7+b2 liblapacke-dev_3.12.1-7+b2 libldap2_2.6.13+dfsg-1+b1 liblsan0_16.1.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20251231-1+b1 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.2-3 libpam-modules_1.7.0-6 libpam-modules-bin_1.7.0-6 libpam-runtime_1.7.0-6 libpam0g_1.7.0-6 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-8 libperl5.44_5.44.0~rc1-1 libpipeline1_1.5.8-3 libquadmath0_16.1.0-2 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.0-2+b1 libselinux1_3.10-1 libsframe3_2.46.50.20260617-1 libsmartcols1_2.42.2-1 libsqlite3-0_3.53.3-1 libssl3t64_3.6.3-1 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 libsystemd0_261.1-1 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20251231-1+b1 libtmglib-dev_3.12.1-7+b2 libtmglib3_3.12.1-7+b2 libtool_2.5.4-11 libtsan2_16.1.0-2 libubsan1_16.1.0-2 libuchardet0_0.0.8-2+b2 libudev1_261.1-1 libunistring5_1.4.2-1 libuuid1_2.42.2-1 libxml2-16_2.15.3+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.0.13-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1+b1 openssl-provider-legacy_3.6.3-1 patch_2.8-2 perl_5.44.0~rc1-1 perl-base_5.44.0~rc1-1 perl-modules-5.40_5.40.1-8 perl-modules-5.44_5.44.0~rc1-1 pinentry-curses_1.3.2-4 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.3.0-5+b2 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 util-linux_2.42.2-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sun, 28 Jun 2026 05:44:12 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: eigensoft Binary: eigensoft Architecture: any Version: 8.0.0+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/eigensoft Vcs-Git: https://salsa.debian.org/med-team/eigensoft.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev Package-List: eigensoft deb science optional arch=any Checksums-Sha1: 4dbd0c7d2ec075bc5629202db818578c1a96315b 231064 eigensoft_8.0.0+dfsg.orig.tar.xz 1956f229583dfd3cab5744b06ebfd3fe511350eb 6240 eigensoft_8.0.0+dfsg-2.debian.tar.xz Checksums-Sha256: 5a9576af6d30564391f5892713e9d434c4d0b5baeb75aa720ff1dad7cf556baf 231064 eigensoft_8.0.0+dfsg.orig.tar.xz a7cb4d5a066dbee75101e94b072c46fa40c187d4265a242f678e27215942edd7 6240 eigensoft_8.0.0+dfsg-2.debian.tar.xz Files: 6cc8676fe6f4fe95517ef7d2d2df6606 231064 eigensoft_8.0.0+dfsg.orig.tar.xz b66fd65eb720935b1b676360f8bcd74b 6240 eigensoft_8.0.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmW6jykRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH0bw//Ueg3uVzVJCCFsvsgUVjzWvuEnuBEjDO4 PkKwk6irxdPInqfuxYoeguzyP3X8suN5ZTzZvbpDazzG26Bo1EXrtxCVRliP19o+ yaB1sPbMe00xIu6ouTkRcDDfrx05ixkK6BmU0WPbQXo22m8FkEHTkP21usBPAsmQ nttlSUvShpNPPjsiSrWGG90dJ0HAK1pOafbUUVU+XAv4Ocl37DMUwUiw3hTmkHnU KkHB7UT6uOWY7ICVBT+p1bveyczJmi+vVLsvfbONQg6zZN7eHonsYo256oM8rte2 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/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg dpkg-source: info: unpacking eigensoft_8.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking eigensoft_8.0.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying blas.patch dpkg-source: info: applying lapacke.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Sun, 28 Jun 2026 05:44:13 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network eigensoft_8.0.0+dfsg-2 perl-5.44-throwaway amd64 ----------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network eigensoft_8.0.0+dfsg-2 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg SCHROOT_ALIAS_NAME=perl-5.44-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.44-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.44-amd64-debomatic-77983acb-54db-476a-8469-10dd7d4c5ea6 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package eigensoft dpkg-buildpackage: info: source version 8.0.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/eigensoft.substvars debian/files rm -fr -- debian/eigensoft/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) /usr/bin/make -C src clobber make[2]: Entering directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg/src' rm -f *.o */*.o */*.a nicksrc/*.o eigensrc/*.o ksrc/*.o rm -f baseprog convertf mergeit pca eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca cd ../bin/ ; rm -f baseprog convertf mergeit pca pcatoy smartrel smarteigenstrat twstats eigenstrat eigenstratQTL smartpca ; cd ../src make[2]: Leaving directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg/src' make[1]: Leaving directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg' dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building eigensoft using existing ../eigensoft_8.0.0+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building eigensoft in ../eigensoft_8.0.0+dfsg-2.debian.tar.xz dpkg-source: info: building eigensoft in ../eigensoft_8.0.0+dfsg-2.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg' /usr/bin/make DEBUG_OPTIONS=-g -C src all make[2]: Entering directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg/src' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o baseprog.o baseprog.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcio.o mcio.c mcio.c: In function ‘snpsortit’: mcio.c:119:16: warning: result of ‘10^8’ is 2; did you mean ‘1e8’? [-Wxor-used-as-pow] 119 | base[1] = 10 ^ 8; | ^ | -- | 1 e mcio.c:119:13: note: you can silence this warning by using a hexadecimal constant (0xa rather than 10) 119 | base[1] = 10 ^ 8; | ^~ | 0xa mcio.c:120:16: warning: result of ‘10^9’ is 3; did you mean ‘1e9’? [-Wxor-used-as-pow] 120 | base[2] = 10 ^ 9; | ^ | -- | 1 e mcio.c:120:13: note: you can silence this warning by using a hexadecimal constant (0xa rather than 10) 120 | base[2] = 10 ^ 9; | ^~ | 0xa mcio.c: In function ‘getgenos’: mcio.c:1383:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1383 | system (cmd); | ^~~~~~~~~~~~ mcio.c: In function ‘outfiles’: mcio.c:3218:23: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 3218 | printf ("snpname: %s %d\n", snpname, numsnps); | ^~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o egsubs.o egsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o admutils.o admutils.c admutils.c: In function ‘setid2pops’: admutils.c:1256:31: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 1256 | printf ("(setid2pops): %s not found\n"); | ~^ | | | char * cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o h2d.o h2d.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/exclude.o eigensrc/exclude.c /usr/bin/make -C nicksrc make[3]: Entering directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg/src/nicksrc' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o strsubs.o strsubs.c strsubs.c: In function ‘printslurmenv’: strsubs.c:2007:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2007 | system(sss) ; | ^~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sortit.o sortit.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vsubs.o vsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o statsubs.o statsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linsubs.o linsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o getpars.o getpars.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xsearch.o xsearch.c xsearch.c: In function ‘xloadsearchx’: xsearch.c:256:19: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 256 | sprintf (xx, "%d", i); | ^~ xsearch.c:256:18: note: directive argument in the range [0, 2147483646] 256 | sprintf (xx, "%d", i); | ^~~~ In file included from /usr/include/stdio.h:970, from xsearch.c:1: In function ‘sprintf’, inlined from ‘xloadsearchx’ at xsearch.c:256:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ xsearch.c: In function ‘xloadsearchx’: xsearch.c:256:19: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 256 | sprintf (xx, "%d", i); | ^~ xsearch.c:256:18: note: directive argument in the range [0, 2147483646] 256 | sprintf (xx, "%d", i); | ^~~~ In function ‘sprintf’, inlined from ‘xloadsearchx’ at xsearch.c:256:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ xsearch.c: In function ‘xloadsearch’: xsearch.c:278:19: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 278 | sprintf (xx, "%d", i); | ^~ xsearch.c:278:18: note: directive argument in the range [0, 2147483646] 278 | sprintf (xx, "%d", i); | ^~~~ In function ‘sprintf’, inlined from ‘xloadsearch’ at xsearch.c:278:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ xsearch.c: In function ‘xloadsearch’: xsearch.c:278:19: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 278 | sprintf (xx, "%d", i); | ^~ xsearch.c:278:18: note: directive argument in the range [0, 2147483646] 278 | sprintf (xx, "%d", i); | ^~~~ In function ‘sprintf’, inlined from ‘xloadsearch’ at xsearch.c:278:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gauss.o gauss.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gds.o gds.c ar -r libnick.a strsubs.o sortit.o vsubs.o statsubs.o linsubs.o getpars.o xsearch.o gauss.o gds.o ar: creating libnick.a ranlib libnick.a make[3]: Leaving directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg/src/nicksrc' cc -Wl,-z,relro -Wl,-z,now baseprog.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o baseprog cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o convertf.o convertf.c cc -Wl,-z,relro -Wl,-z,now convertf.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o convertf cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mergeit.o mergeit.c cc -Wl,-z,relro -Wl,-z,now mergeit.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o mergeit cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pca.o pca.c pca.c: In function ‘main’: pca.c:102:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 102 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pca.c:167:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 167 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pca.c:190:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | fscanf (fp, "%c", &Xchar); /* should be \n character */ | ^~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigsubs.o eigensrc/eigsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigx.o eigensrc/eigx.c cc -Wl,-z,relro -Wl,-z,now pca.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o pca cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/pcatoy.o eigensrc/pcatoy.c cc -Wl,-z,relro -Wl,-z,now eigensrc/pcatoy.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/pcatoy cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartrel.o eigensrc/smartrel.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o twsubs.o twsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qpsubs.o qpsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regsubs.o regsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartsubs.o eigensrc/smartsubs.c cc -Wl,-z,relro -Wl,-z,now eigensrc/smartrel.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o eigensrc/eigsubs.o eigensrc/eigx.o eigensrc/smartsubs.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartrel cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smarteigenstrat.o eigensrc/smarteigenstrat.c eigensrc/smarteigenstrat.c: In function ‘readpcafile’: eigensrc/smarteigenstrat.c:332:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 332 | fscanf (fppca, "%d", &K); | ^~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/smarteigenstrat.c:339:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/smarteigenstrat.c:342:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 342 | fscanf (fppca, "%lf", &V[NSAMPLES * n + k]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/smarteigenstrat.c:360:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 360 | fscanf (fppca, "%lf", &tempdouble); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -Wl,-z,relro -Wl,-z,now eigensrc/smarteigenstrat.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smarteigenstrat cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/twstats.o eigensrc/twstats.c cc -Wl,-z,relro -Wl,-z,now eigensrc/twstats.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/twstats cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eigensrc/eigenstrat.c -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstrat eigensrc/eigenstrat.c: In function ‘main’: eigensrc/eigenstrat.c:86:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:123:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fscanf (fppca, "%d", &K); | ^~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:130:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 130 | fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:133:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 133 | fscanf (fppca, "%lf", &V[NSAMPLES * n + k]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:151:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | fscanf (fppca, "%lf", &tempdouble); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:165:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 165 | fscanf (fppheno, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:188:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 188 | fscanf (fppheno, "%c", &Xchar); /* should be end of file */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:244:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 244 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:267:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 267 | fscanf (fp, "%c", &Xchar); /* should be \n character */ | ^~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eigensrc/eigenstratQTL.c -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstratQTL eigensrc/eigenstratQTL.c: In function ‘main’: eigensrc/eigenstratQTL.c:86:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:123:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fscanf (fppca, "%d", &K); | ^~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:130:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 130 | fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:133:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 133 | fscanf (fppca, "%lf", &V[NSAMPLES * n + k]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:151:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | fscanf (fppca, "%lf", &tempdouble); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:172:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 172 | fscanf (fppheno, "%lf", &iscase[n]); /* QTL phenotype */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:174:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 174 | fscanf (fppheno, "%lf", &tempdouble); /* to check # entries */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:227:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 227 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:250:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 250 | fscanf (fp, "%c", &Xchar); /* should be \n character */ | ^~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartpca.o eigensrc/smartpca.c eigensrc/smartpca.c: In function ‘main’: eigensrc/smartpca.c:1292:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘char *’ [-Wformat=] 1292 | printf("elllist: %3d %20s\n", indx -> ID) ; fflush(stdout) ; | ~~^ ~~~~~~~~~~ | | | | int char * | %3s eigensrc/smartpca.c:1292:28: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 1292 | printf("elllist: %3d %20s\n", indx -> ID) ; fflush(stdout) ; | ~~~^ | | | char * eigensrc/smartpca.c:1675:43: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘double’ [-Wformat=] 1675 | printf("coeff multiplier (eigenvector %d): %9.3f\n", y, j) ; | ~^ ~ | | | | int double | %f eigensrc/smartpca.c:1675:51: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 1675 | printf("coeff multiplier (eigenvector %d): %9.3f\n", y, j) ; | ~~~~^ ~ | | | | double int | %9.3d eigensrc/smartpca.c:700:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 700 | system (buff); | ^~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gval.o gval.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_fpca.o ksrc/kjg_fpca.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_gsl.o ksrc/kjg_gsl.c ksrc/kjg_gsl.c: In function ‘kjg_gsl_matrix_fscanf’: ksrc/kjg_gsl.c:38:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 38 | fscanf (stream, "%lg", &x); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cc -Wl,-z,relro -Wl,-z,now eigensrc/smartpca.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartpca make[2]: Leaving directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg/src' cd src && make install make[2]: Entering directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg/src' mv baseprog convertf mergeit pca eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca ../bin make[2]: Leaving directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg/src' make[1]: Leaving directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/eigensoft.substvars rm -fr -- debian/.debhelper/generated/eigensoft/ debian/eigensoft/ debian/tmp/ dh_auto_install --destdir=debian/eigensoft/ install -m0755 -d /build/eigensoft-q5Q008/eigensoft-8.0.0\+dfsg/debian/eigensoft debian/rules override_dh_install make[1]: Entering directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg' dh_install install -m0755 -d debian/eigensoft/usr/bin cp --reflink=auto -a ./bin/baseprog ./bin/convertf ./bin/eigenstrat ./bin/eigenstratQTL ./bin/evec2pca-ped.perl ./bin/evec2pca.perl ./bin/gc.perl ./bin/mergeit ./bin/pca ./bin/pcatoy ./bin/ploteig ./bin/rescale_ell ./bin/smarteigenstrat ./bin/smarteigenstrat.perl ./bin/smartpca ./bin/smartpca.perl ./bin/smartrel ./bin/twstats debian/eigensoft/usr/bin/ install -m0755 -d debian/eigensoft/usr/lib/debian-med/bin cp --reflink=auto -a ./bin/gc.perl debian/eigensoft/usr/lib/debian-med/bin/ install -m0755 -d debian/eigensoft/usr/lib/eigensoft cp --reflink=auto -a ./bin/smarteigenstrat ./bin/smartpca debian/eigensoft/usr/lib/eigensoft/ install -m0755 -d debian/eigensoft/usr/share/eigensoft cp --reflink=auto -a ./CONVERTF ./EIGENSTRAT ./POPGEN debian/eigensoft/usr/share/eigensoft/ find debian/eigensoft/usr/share/ -type f -empty -delete # file consists only from single line with wrong interpreter find debian/eigensoft/usr/share/ -type f -name HGDP.X.perl -delete # Fix wrappers and drop *.perl extension in /usr/bin while keeping # the original name in /usr/lib/debian-med/bin mkdir -p debian/eigensoft/usr/lib/debian-med/bin for pl in evec2pca-ped evec2pca smarteigenstrat smartpca ; do \ rm -f debian/eigensoft/usr/bin/${pl} ; \ sed -i \ -e "s?\(command[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \ -e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \ -e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(evec2pca.*\)\.perl?\1?" \ -e "s?\(${pl}\)\.perl?\1?" \ debian/eigensoft/usr/bin/${pl}.perl ; \ cp -a debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/bin/${pl} ; \ mv debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/lib/debian-med/bin ; \ done cd debian && for pl in `grep -lR '/usr/.*/bin/perl' | grep -v debian/rules` ; do \ sed -i -e "s?/usr/.*/bin/perl?/usr/bin/perl?" ${pl} ; \ done rm debian/eigensoft/usr/bin/gc.perl make[1]: Leaving directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg' dh_installdocs install -m0755 -d debian/eigensoft/usr/share/doc/eigensoft install -m0755 -d debian/eigensoft/usr/share/doc/eigensoft cp --reflink=auto -a ./README debian/eigensoft/usr/share/doc/eigensoft chmod -R u\+rw,go=rX debian/eigensoft/usr/share/doc install -p -m0644 debian/README.Debian debian/eigensoft/usr/share/doc/eigensoft/README.Debian install -p -m0644 debian/copyright debian/eigensoft/usr/share/doc/eigensoft/copyright dh_installchangelogs install -m0755 -d debian/eigensoft/usr/share/doc/eigensoft install -p -m0644 debian/.debhelper/generated/eigensoft/dh_installchangelogs.dch.trimmed debian/eigensoft/usr/share/doc/eigensoft/changelog.Debian dh_installexamples install -m0755 -d debian/eigensoft/usr/share/doc/eigensoft/examples cp --reflink=auto -a ./CONVERTF debian/eigensoft/usr/share/doc/eigensoft/examples cp --reflink=auto -a ./EIGENSTRAT debian/eigensoft/usr/share/doc/eigensoft/examples cp --reflink=auto -a ./POPGEN debian/eigensoft/usr/share/doc/eigensoft/examples dh_installman install -m0755 -d debian/eigensoft/usr/share/man/man1/ install -p -m0644 ./debian/mans/smarteigenstrat.1 debian/eigensoft/usr/share/man/man1/smarteigenstrat.1 man-recode --to-code UTF-8 --suffix .dh-new debian/eigensoft/usr/share/man/man1/smarteigenstrat.1 mv debian/eigensoft/usr/share/man/man1/smarteigenstrat.1.dh-new debian/eigensoft/usr/share/man/man1/smarteigenstrat.1 chmod 0644 -- debian/eigensoft/usr/share/man/man1/smarteigenstrat.1 dh_perl mv debian/eigensoft.substvars.new debian/eigensoft.substvars dh_link install -m0755 -d debian/eigensoft/usr/bin rm -f debian/eigensoft/usr/bin/gc-eigensoft ln -s ../lib/debian-med/bin/gc.perl debian/eigensoft/usr/bin/gc-eigensoft dh_strip_nondeterminism dh_compress cd debian/eigensoft chmod a-x usr/share/doc/eigensoft/README usr/share/doc/eigensoft/changelog.Debian usr/share/man/man1/smarteigenstrat.1 gzip -9nf usr/share/doc/eigensoft/README usr/share/doc/eigensoft/changelog.Debian usr/share/man/man1/smarteigenstrat.1 cd '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg' rm -f debian/eigensoft.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg' dh_fixperms find debian/eigensoft ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/eigensoft/usr/share/doc -type f -a -true -a ! -regex 'debian/eigensoft/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/eigensoft/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/eigensoft/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/eigensoft -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/eigensoft/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/eigensoft/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/*/usr/share/eigensoft -type f -name "*.perl" -exec chmod +x \{\} \; make[1]: Leaving directory '/build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg' dh_missing dh_dwz -a install -m0755 -d debian/eigensoft/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/eigensoft/usr/lib/debug/.dwz/x86_64-linux-gnu/eigensoft.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/eigensoft.debug -- debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/lib/eigensoft/smartpca objcopy --compress-debug-sections debian/eigensoft/usr/lib/debug/.dwz/x86_64-linux-gnu/eigensoft.debug chmod 0644 -- debian/eigensoft/usr/lib/debug/.dwz/x86_64-linux-gnu/eigensoft.debug dh_strip -a install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/e2/a290ced27a8cd1b6b03a797d08a885b6eeb25f.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/e2/a290ced27a8cd1b6b03a797d08a885b6eeb25f.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/lib/eigensoft/smarteigenstrat objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/e2/a290ced27a8cd1b6b03a797d08a885b6eeb25f.debug debian/eigensoft/usr/lib/eigensoft/smarteigenstrat install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/96 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/lib/eigensoft/smartpca debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/96/763dcc06ebf1020494649dae9ef00de00a9326.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/96/763dcc06ebf1020494649dae9ef00de00a9326.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/lib/eigensoft/smartpca objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/96/763dcc06ebf1020494649dae9ef00de00a9326.debug debian/eigensoft/usr/lib/eigensoft/smartpca install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/c1 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/baseprog debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/c1/9f259793de8fb7ff7c3f587529e227851afabb.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/c1/9f259793de8fb7ff7c3f587529e227851afabb.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/baseprog objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/c1/9f259793de8fb7ff7c3f587529e227851afabb.debug debian/eigensoft/usr/bin/baseprog install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/19 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/convertf debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/19/14b8296041ba0711bfefa0f21377a5190edd3e.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/19/14b8296041ba0711bfefa0f21377a5190edd3e.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/convertf objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/19/14b8296041ba0711bfefa0f21377a5190edd3e.debug debian/eigensoft/usr/bin/convertf install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/36 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/pca debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/36/3eb19c468585a505fc892329ca47cfcdd9802b.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/36/3eb19c468585a505fc892329ca47cfcdd9802b.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/pca objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/36/3eb19c468585a505fc892329ca47cfcdd9802b.debug debian/eigensoft/usr/bin/pca install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/eigenstratQTL debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/d4/5bab68c7f96a22556859340bb99a04e483698e.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/d4/5bab68c7f96a22556859340bb99a04e483698e.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/eigenstratQTL objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/d4/5bab68c7f96a22556859340bb99a04e483698e.debug debian/eigensoft/usr/bin/eigenstratQTL install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/9d objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/smartrel debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/9d/6edde4f4d087e5e3204c784dfd5132dcdc4a34.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/9d/6edde4f4d087e5e3204c784dfd5132dcdc4a34.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/smartrel objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/9d/6edde4f4d087e5e3204c784dfd5132dcdc4a34.debug debian/eigensoft/usr/bin/smartrel install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/eigenstrat debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/ec/04accad2693a794c58bede46166d7fb7abb7e5.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/ec/04accad2693a794c58bede46166d7fb7abb7e5.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/eigenstrat objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/ec/04accad2693a794c58bede46166d7fb7abb7e5.debug debian/eigensoft/usr/bin/eigenstrat install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/3f objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/twstats debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/3f/ea6d9bf6a74e73f3ec4b9baa78cd95a685d029.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/3f/ea6d9bf6a74e73f3ec4b9baa78cd95a685d029.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/twstats objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/3f/ea6d9bf6a74e73f3ec4b9baa78cd95a685d029.debug debian/eigensoft/usr/bin/twstats install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/9f objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/mergeit debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/9f/58a0fb6be151f29c33161ed928f5be98234d68.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/9f/58a0fb6be151f29c33161ed928f5be98234d68.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/mergeit objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/9f/58a0fb6be151f29c33161ed928f5be98234d68.debug debian/eigensoft/usr/bin/mergeit install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/pcatoy debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67/55337e1a44afef016d7ba5c39b88c1aeadd8b6.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67/55337e1a44afef016d7ba5c39b88c1aeadd8b6.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/pcatoy objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67/55337e1a44afef016d7ba5c39b88c1aeadd8b6.debug debian/eigensoft/usr/bin/pcatoy install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/eigensoft/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/eigensoft/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/eigensoft/usr/lib/debug install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/share/doc ln -s eigensoft debian/.debhelper/eigensoft/dbgsym-root/usr/share/doc/eigensoft-dbgsym install -m0755 -d debian/.debhelper/eigensoft dh_makeshlibs -a rm -f debian/eigensoft/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/eigensoft/DEBIAN dpkg-shlibdeps -Tdebian/eigensoft.substvars debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pcatoy dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/lib/eigensoft/smartpca was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb install -m0755 -d debian/eigensoft/DEBIAN dh_gencontrol install -m0755 -d debian/eigensoft/DEBIAN echo misc:Depends= >> debian/eigensoft.substvars echo misc:Pre-Depends= >> debian/eigensoft.substvars install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/DEBIAN dpkg-gencontrol -peigensoft -ldebian/changelog -Tdebian/eigensoft.substvars -cdebian/control -Pdebian/.debhelper/eigensoft/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=eigensoft-dbgsym -DDepends="eigensoft (= \${binary:Version})" -DDescription="debug symbols for eigensoft" -DBuild-Ids="1914b8296041ba0711bfefa0f21377a5190edd3e 363eb19c468585a505fc892329ca47cfcdd9802b 3fea6d9bf6a74e73f3ec4b9baa78cd95a685d029 6755337e1a44afef016d7ba5c39b88c1aeadd8b6 96763dcc06ebf1020494649dae9ef00de00a9326 9d6edde4f4d087e5e3204c784dfd5132dcdc4a34 9f58a0fb6be151f29c33161ed928f5be98234d68 c19f259793de8fb7ff7c3f587529e227851afabb d45bab68c7f96a22556859340bb99a04e483698e e2a290ced27a8cd1b6b03a797d08a885b6eeb25f ec04accad2693a794c58bede46166d7fb7abb7e5" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/DEBIAN/control dpkg-gencontrol -peigensoft -ldebian/changelog -Tdebian/eigensoft.substvars -cdebian/control -Pdebian/eigensoft chmod 0644 -- debian/eigensoft/DEBIAN/control dh_md5sums install -m0755 -d debian/eigensoft/DEBIAN cd debian/eigensoft >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/eigensoft/DEBIAN/md5sums install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/DEBIAN cd debian/.debhelper/eigensoft/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/eigensoft .. dpkg-deb --root-owner-group --build debian/.debhelper/eigensoft/dbgsym-root .. dpkg-deb: building package 'eigensoft-dbgsym' in '../eigensoft-dbgsym_8.0.0+dfsg-2_amd64.deb'. dpkg-deb: building package 'eigensoft' in '../eigensoft_8.0.0+dfsg-2_amd64.deb'. dpkg-genbuildinfo -O../eigensoft_8.0.0+dfsg-2_amd64.buildinfo dpkg-genchanges -O../eigensoft_8.0.0+dfsg-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2026-06-28T05:44:46Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 28 Jun 2026 05:44:47 +0000 | +------------------------------------------------------------------------------+ eigensoft_8.0.0+dfsg-2_amd64.changes: ------------------------------------- Format: 1.8 Date: Wed, 31 Jan 2024 19:16:19 +0100 Source: eigensoft Binary: eigensoft eigensoft-dbgsym Architecture: source amd64 Version: 8.0.0+dfsg-2 Distribution: perl-5.44-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: eigensoft - reduction of population bias for genetic analyses Closes: 1045139 Changes: eigensoft (8.0.0+dfsg-2) unstable; urgency=medium . * Fix download filename in watch file * Standards-Version: 4.6.2 (routine-update) * Change interpreter PATH only in debian dir not in upstream source Closes: #1045139 Checksums-Sha1: 17921df07c03e24b21846847c66dbc4915019ff3 1224 eigensoft_8.0.0+dfsg-2.dsc 1956f229583dfd3cab5744b06ebfd3fe511350eb 6240 eigensoft_8.0.0+dfsg-2.debian.tar.xz 92b2ad551d402b6203185e40b97097931677a924 3190044 eigensoft-dbgsym_8.0.0+dfsg-2_amd64.deb 94b99ba69a0c821a1e7bb667e6dc21627da42fff 5795 eigensoft_8.0.0+dfsg-2_amd64.buildinfo 10ff95f8bc312298c78de57ebabfd4eff8d7552d 516836 eigensoft_8.0.0+dfsg-2_amd64.deb Checksums-Sha256: 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3190044 eigensoft-dbgsym_8.0.0+dfsg-2_amd64.deb eea3cb36dcbe085f3b8446558d04d658b17423d26bfbba4c475a1903a67c6fa4 516836 eigensoft_8.0.0+dfsg-2_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 28 Jun 2026 05:44:46 +0000 Build-Path: /build/eigensoft-q5Q008/eigensoft-8.0.0+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-1), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3), binutils (= 2.46.50.20260617-1), binutils-common (= 2.46.50.20260617-1), binutils-x86-64-linux-gnu (= 2.46.50.20260617-1), bsdextrautils (= 2.42.2-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.3.0-1), cpp-15-x86-64-linux-gnu (= 15.3.0-1), cpp-x86-64-linux-gnu (= 4:15.2.0-5+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.2), debianutils (= 5.23.2), dh-autoreconf (= 22), 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bytes: control archive=3948 bytes. 1155 bytes, 20 lines control 16709 bytes, 204 lines md5sums Package: eigensoft Version: 8.0.0+dfsg-2 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3897 Depends: libblas3 | libblas.so.3, libc6 (>= 2.38), libgsl28 (>= 2.8+dfsg), liblapack3 | liblapack.so.3, liblapacke (>= 3.12.1), perl:any Recommends: gnuplot Section: science Priority: optional Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/ Description: reduction of population bias for genetic analyses The EIGENSOFT package combines functionality from the group's population genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes. drwxr-xr-x root/root 0 2024-01-31 18:16 ./ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/bin/ -rwxr-xr-x root/root 420400 2024-01-31 18:16 ./usr/bin/baseprog -rwxr-xr-x root/root 428728 2024-01-31 18:16 ./usr/bin/convertf -rwxr-xr-x root/root 18672 2024-01-31 18:16 ./usr/bin/eigenstrat -rwxr-xr-x root/root 18672 2024-01-31 18:16 ./usr/bin/eigenstratQTL -rwxr-xr-x root/root 1462 2024-01-31 18:16 ./usr/bin/evec2pca -rwxr-xr-x root/root 2311 2024-01-31 18:16 ./usr/bin/evec2pca-ped lrwxrwxrwx root/root 0 2024-01-31 18:16 ./usr/bin/gc-eigensoft -> ../lib/debian-med/bin/gc.perl -rwxr-xr-x root/root 412256 2024-01-31 18:16 ./usr/bin/mergeit -rwxr-xr-x root/root 145648 2024-01-31 18:16 ./usr/bin/pca -rwxr-xr-x root/root 137456 2024-01-31 18:16 ./usr/bin/pcatoy -rwxr-xr-x root/root 5702 2024-01-31 18:16 ./usr/bin/ploteig -rwxr-xr-x 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./usr/share/eigensoft/POPGEN/grmjunk -rw-r--r-- root/root 55 2021-06-07 14:37 ./usr/share/eigensoft/POPGEN/grmjunk.id -rw-r--r-- root/root 268 2021-06-07 14:37 ./usr/share/eigensoft/POPGEN/par.example -rw-r--r-- root/root 3205 2021-06-07 14:37 ./usr/share/eigensoft/POPGEN/smartpca.info -rw-r--r-- root/root 1490 2021-06-07 14:37 ./usr/share/eigensoft/POPGEN/twexample.eval -rw-r--r-- root/root 9600 2021-06-07 14:37 ./usr/share/eigensoft/POPGEN/twexample.out -rwxr-xr-x root/root 184 2021-06-07 14:37 ./usr/share/eigensoft/POPGEN/twexample.perl -rw-r--r-- root/root 5933 2021-06-07 14:37 ./usr/share/eigensoft/POPGEN/twtable drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/share/man/ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/share/man/man1/ -rw-r--r-- root/root 884 2024-01-31 18:16 ./usr/share/man/man1/smarteigenstrat.1.gz +------------------------------------------------------------------------------+ | Post Build Sun, 28 Jun 2026 05:44:48 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 28 Jun 2026 05:44:48 +0000 | +------------------------------------------------------------------------------+ Purging /build/eigensoft-q5Q008 Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 28 Jun 2026 05:44:49 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 30724 Build-Time: 33 Distribution: perl-5.44-throwaway Host Architecture: amd64 Install-Time: 8 Job: /srv/debomatic/incoming/eigensoft_8.0.0+dfsg-2.dsc Machine Architecture: amd64 Package: eigensoft Package-Time: 47 Source-Version: 8.0.0+dfsg-2 Space: 30724 Status: successful Version: 8.0.0+dfsg-2 -------------------------------------------------------------------------------- Finished at 2026-06-28T05:44:46Z Build needed 00:00:47, 30724k disk space