sbuild (Debian sbuild) 0.91.10 (27 June 2026) on carme.larted.org.uk +==============================================================================+ | cd-hit 4.8.1-4 (amd64) Thu, 09 Jul 2026 04:51:27 +0000 | +==============================================================================+ Package: cd-hit Version: 4.8.1-4 Source Version: 4.8.1-4 Distribution: perl-5.44-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Thu, 09 Jul 2026 04:51:28 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup cd-hit_4.8.1-4 perl-5.44-throwaway amd64 --------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup cd-hit_4.8.1-4 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Thu, 09 Jul 2026 04:51:28 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://deb.debian.org/debian sid InRelease Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Thu, 09 Jul 2026 04:51:30 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/cd-hit_4.8.1-4.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 09 Jul 2026 04:51:30 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/cd-hit-Lcy5Cr/resolver-tn9mPG/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/cd-hit-Lcy5Cr/resolver-tn9mPG/apt_archive ./ InRelease Get:2 copy:/build/cd-hit-Lcy5Cr/resolver-tn9mPG/apt_archive ./ Release [609 B] Ign:3 copy:/build/cd-hit-Lcy5Cr/resolver-tn9mPG/apt_archive ./ Release.gpg Get:4 copy:/build/cd-hit-Lcy5Cr/resolver-tn9mPG/apt_archive ./ Sources [622 B] Get:5 copy:/build/cd-hit-Lcy5Cr/resolver-tn9mPG/apt_archive ./ Packages [661 B] Fetched 1892 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl liblocale-gettext-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl liblocale-gettext-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 13.0 MB/13.0 MB of archives. After this operation, 56.3 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.44/main amd64 liblocale-gettext-perl amd64 1.07-10+b1 [15.1 kB] Get:2 copy:/build/cd-hit-Lcy5Cr/resolver-tn9mPG/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [872 B] Get:3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-3 [332 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.2-1 [100.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-3 [820 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:24 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-3 [2658 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.3 [934 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Preconfiguring packages ... Fetched 13.0 MB in 0s (88.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-10+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-10+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. 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Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../31-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up bsdextrautils (2.42.2-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.3+dfsg-1) ... Setting up libdebhelper-perl (14.3) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-3) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.47-4) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up autopoint (1.0-3) ... Setting up autoconf (2.73-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Setting up dwz (0.16-4) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up liblocale-gettext-perl (1.07-10+b1) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-3) ... Setting up libtool (2.5.4-11) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (22) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (14.3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-17) ... +------------------------------------------------------------------------------+ | Check architectures Thu, 09 Jul 2026 04:51:37 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Thu, 09 Jul 2026 04:51:37 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.46.50.20260617-1 dpkg-dev_1.23.7 g++-15_15.3.0-1 gcc-15_15.3.0-1 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 linux-libc-dev_7.1.3-1 Package versions: apt_3.3.1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.46.50.20260617-1 binutils-common_2.46.50.20260617-1 binutils-x86-64-linux-gnu_2.46.50.20260617-1 bsdextrautils_2.42.2-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.3.0-1 cpp-15-x86-64-linux-gnu_15.3.0-1 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-5 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.47-4 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.3.0-1 g++-15-x86-64-linux-gnu_15.3.0-1 g++-x86-64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.3.0-1 gcc-15-base_15.3.0-1 gcc-15-x86-64-linux-gnu_15.3.0-1 gcc-16-base_16.1.0-2 gcc-x86-64-linux-gnu_4:15.2.0-5+b1 gettext_1.0-3 gettext-base_1.0-3 gnupg_2.4.9-5 gnupg-l10n_2.4.9-5 gpg_2.4.9-5 gpg-agent_2.4.9-5 gpgconf_2.4.9-5 gpgsm_2.4.9-5 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 help2man_1.49.3 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.1 libarchive-zip-perl_1.68-1 libasan8_16.1.0-2 libassuan9_3.0.2-2+b2 libatomic1_16.1.0-2 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46.50.20260617-1 libblkid1_2.42.2-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-17 libc-dev-bin_2.42-17 libc-gconv-modules-extra_2.42-17 libc6_2.42-17 libc6-dev_2.42-17 libcap-ng0_0.9.3-1+b1 libcc1-0_16.1.0-2 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46.50.20260617-1 libctf0_2.46.50.20260617-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdpkg-perl_1.23.7 libeatmydata1_131-2+b2 libelf1t64_0.195-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-15-dev_15.3.0-1 libgcc-s1_16.1.0-2 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.1.0-2 libgpg-error0_1.61-3 libgprofng0_2.46.50.20260617-1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.1.0-2 libidn2-0_2.3.8-5 libisl23_0.27-2 libitm1_16.1.0-2 libjansson4_2.15.1-1 libksba8_1.8.0-3 libldap2_2.6.13+dfsg-1+b1 liblocale-gettext-perl_1.07-10+b1 liblsan0_16.1.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.2-3 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-8 libperl5.44_5.44.0~rc2-1 libpipeline1_1.5.8-3 libquadmath0_16.1.0-2 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.0-2+b1 libselinux1_3.10-1 libsframe3_2.46.50.20260617-1 libsmartcols1_2.42.2-1 libsqlite3-0_3.53.3-1 libssl3t64_3.6.3-1 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 libsystemd0_261.1-2 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.5.4-11 libtsan2_16.1.0-2 libubsan1_16.1.0-2 libuchardet0_0.0.8-2+b2 libudev1_261.1-2 libunistring5_1.4.2-1 libuuid1_2.42.2-1 libxml2-16_2.15.3+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.1.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.3-1 patch_2.8-2 perl_5.44.0~rc2-1 perl-base_5.44.0~rc2-1 perl-modules-5.40_5.40.1-8 perl-modules-5.44_5.44.0~rc2-1 pinentry-curses_1.3.2-4 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.4.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 util-linux_2.42.2-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Thu, 09 Jul 2026 04:51:37 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cd-hit Binary: cd-hit Architecture: any Version: 4.8.1-4 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille , Étienne Mollier Homepage: http://weizhongli-lab.org/cd-hit/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/cd-hit Vcs-Git: https://salsa.debian.org/med-team/cd-hit.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev Package-List: cd-hit deb science optional arch=any Checksums-Sha1: 12c401562cd506296ccafa301e1fd8a29b210470 945639 cd-hit_4.8.1.orig.tar.gz 0c7096447908bdbb0cb5795b02171c585d3618f0 8128 cd-hit_4.8.1-4.debian.tar.xz Checksums-Sha256: f8bc3cdd7aebb432fcd35eed0093e7a6413f1e36bbd2a837ebc06e57cdb20b70 945639 cd-hit_4.8.1.orig.tar.gz 827e471b3724e5680aebf69c155d825aa812be549bf0536defc29668f3abbbe1 8128 cd-hit_4.8.1-4.debian.tar.xz Files: b997bcc5a07703ca9bd3f84818114c37 945639 cd-hit_4.8.1.orig.tar.gz 40beb397b78cc269ea9dc48f9fa22c88 8128 cd-hit_4.8.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmEfbYsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqkXBAAwMJobCyKBNsZS2dmYUeOST550IJT CeDXSEggmWF9Mw5Rkmazj7TWBRkk0YlhVPhCcJqHiVOnF2ZqP/39oRq7Gr9ZxRvd WkXWxTtJUhJ76sMedjgLxSN+5ymYWc5eTVeTaJnW3rhXRWKp4TSZ137LbRUwSwue SA2acrDl61yZYLP2NunGob882kAdDbWyiYLElvr8dZClEaOfMyCcla3sAwzxVSYW U5xbyTLuOOFI2PZoXcspmJhU/aKo6YtEYEQJKUckD3+RziXLNtbOIe7cvq4STRp7 N03vUNU81KDxjmkoQXMJLHDbyQjh61w6KkdTGCICuWGa9Ihxk3dKLCs4/B4h+yKo 2sSELDU9KDATXVtDS4ZdoFTPxaYgVahmaDQJwSOD958iq2QJoyhWyg+HAz55raPJ hBOu+kAIym6lGbmRsTRVkblFX0KgDZa19jzu+sfR7W3HBFNeWDPZMI65fykUU8HQ Kovkw+grEPeLiZiejk0tsV2x9VyCRsjRiBMwk/19QKvSbf34hgx6unRsiMHwwMSM SXOOqIQAz8PUWAAF2NXe3lSdaX69XFyB6W+unGrKnTAx6Uf8zNqzqGTYn6DG4tls YeGY/8TqU3JMWCUT7zNXAljxfYviGtg0Lme1WH3eFb2T/xKxUOLOGSitBQHD2YER XB4SNWSZft9uOFE= =0WHq -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./cd-hit_4.8.1-4.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./cd-hit_4.8.1-4.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting cd-hit in /build/cd-hit-Lcy5Cr/cd-hit-4.8.1 dpkg-source: info: unpacking cd-hit_4.8.1.orig.tar.gz dpkg-source: info: unpacking cd-hit_4.8.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_help2man.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Thu, 09 Jul 2026 04:51:38 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network cd-hit_4.8.1-4 perl-5.44-throwaway amd64 --------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network cd-hit_4.8.1-4 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1 SCHROOT_ALIAS_NAME=perl-5.44-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.44-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.44-amd64-debomatic-8e6542ed-2b09-4eb6-87bc-0b92db20ddbd SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package cd-hit dpkg-buildpackage: info: source version 4.8.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j2 clean make[1]: Entering directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' rm -f *.o cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454 make[1]: Leaving directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building cd-hit using existing ../cd-hit_4.8.1.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building cd-hit in ../cd-hit_4.8.1-4.debian.tar.xz dpkg-source: info: building cd-hit in ../cd-hit_4.8.1-4.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' dh_auto_build -- openmp=yes CC='$(CXX)' make -j2 INSTALL="install --strip-program=true" openmp=yes CC=\$\(CXX\) make[2]: Entering directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-common.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-utility.c++ -c cdhit-utility.c++:9:79: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 9 | char cd_hit_ver[] = "\t\t====== CD-HIT version " CDHIT_VERSION " (built on " __DATE__ ") ======"; | ^~~~~~~~ cdhit-common.c++:322:23: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 322 | strcpy( date, __DATE__ ); | ^~~~~~~~ cdhit-common.c++:326:73: warning: macro ‘__TIME__’ might prevent reproducible builds [-Wdate-time] 326 | printf( "Program: CD-HIT, V" CDHIT_VERSION WITH_OPENMP ", %s, " __TIME__ "\n", date ); | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-est.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-2d.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-est-2d.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-div.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-454.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-est.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-est g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-2d.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-2d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-est-2d.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-est-2d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-div.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-div g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-454.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-454 make[2]: Leaving directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' make[1]: Leaving directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' dh_auto_install -- PREFIX=debian/cd-hit/usr/lib/cd-hit make -j2 install DESTDIR=/build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" PREFIX=debian/cd-hit/usr/lib/cd-hit make[2]: Entering directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \ install -m 0755 $prog debian/cd-hit/usr/lib/cd-hit; \ done install -m 0755 *.pl debian/cd-hit/usr/lib/cd-hit; make[2]: Leaving directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' make[1]: Leaving directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' mkdir -p /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1/ help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences' \ /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/cd-hit > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences, optimised for 454 data' \ /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/cd-hit-454 > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-454.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences in db1 or db2 format' \ /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/cd-hit-2d > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-2d.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='run CD-HIT algorithm on RNA/DNA sequences' \ /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/cd-hit-est > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-est.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='run CD-HIT algorithm on RNA/DNA sequences in db1 or db2 format' \ /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/cd-hit-est-2d > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-est-2d.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a big clustering job into pieces to run cd-hit-2d or cd-hit-est-2d jobs' \ /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/cd-hit-2d-para.pl > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-2d-para.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs' \ /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/cd-hit-para.pl > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-para.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a FASTA file into pieces' \ /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/cd-hit-div.pl > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-div.1 # psi-cd-hit.pl is throwing some errors which are fixed using sed # ... at least in versions <= 4.6.4 - now help2man does not work at all #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities' \ # /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/psi-cd-hit.pl | \ # sed -e '/^Name "main::.*" used only once:/d' \ # > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//psi-cd-hit.1 # help2man does not work at all since version 4.6.4 #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities in db1 or db2 format' \ # /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/psi-cd-hit-2d.pl > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//psi-cd-hit-2d.1 # FIXME: what is the difference between psi-cd-hit-2d.pl and psi-cd-hit-2d-g1.pl ? # help2man does not work at all since version 4.6.4 #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities in db1 or db2 format' \ # /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/psi-cd-hit-2d-g1.pl > /build/cd-hit-Lcy5Cr/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//psi-cd-hit-2d-g1.1 # No help output from # clstr2tree.pl # clstr_merge.pl # clstr_merge_noorder.pl # clstr_reduce.pl # clstr_renumber.pl # clstr_rev.pl # clstr_sort_by.pl # clstr_sort_prot_by # make_multi_seq # psi-cd-hit-local.pl -> even throws several "used only once: possible typo" errors make[1]: Leaving directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/cd-hit-Lcy5Cr/cd-hit-4.8.1' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'cd-hit' in '../cd-hit_4.8.1-4_amd64.deb'. dpkg-deb: building package 'cd-hit-dbgsym' in '../cd-hit-dbgsym_4.8.1-4_amd64.deb'. dpkg-genbuildinfo -O../cd-hit_4.8.1-4_amd64.buildinfo dpkg-genchanges -O../cd-hit_4.8.1-4_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2026-07-09T04:52:04Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 09 Jul 2026 04:52:04 +0000 | +------------------------------------------------------------------------------+ cd-hit_4.8.1-4_amd64.changes: ----------------------------- Format: 1.8 Date: Fri, 20 Aug 2021 10:39:56 +0200 Source: cd-hit Binary: cd-hit cd-hit-dbgsym Architecture: source amd64 Version: 4.8.1-4 Distribution: perl-5.44-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: cd-hit - suite of programs designed to quickly group sequences Closes: 992052 Changes: cd-hit (4.8.1-4) unstable; urgency=medium . * d/watch: fix broken link to github * d/control: add myself to uploaders * d/t/run-unit-test: disable memory limits in tests (Closes: #992052) * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 37f6134476f35d6558cf03c25bd9e55dd0294634 1120 cd-hit_4.8.1-4.dsc 0ffd763d625eaac0e51e542aff8c2966873147cb 8136 cd-hit_4.8.1-4.debian.tar.xz 02e0288c15b7f2622a6af9fdf61d78feca307707 2039388 cd-hit-dbgsym_4.8.1-4_amd64.deb 66e54f63de36cb0601c8dbb13ea5d49b74d99399 5256 cd-hit_4.8.1-4_amd64.buildinfo 0510b5400f5febe9db8d1cb9756b56ecbaba13cb 525000 cd-hit_4.8.1-4_amd64.deb Checksums-Sha256: 2c4d4217becce49493270161f6bc2bd8add41c6d971a52ae202edea05f7f40a4 1120 cd-hit_4.8.1-4.dsc 21db577ee74b36687baaab7997d274f619ab80033aea505fe120d6c61f82e360 8136 cd-hit_4.8.1-4.debian.tar.xz ae15e45442db0d5743afac627eee0608904c8e5ca4978876ebcc3f86f62401c9 2039388 cd-hit-dbgsym_4.8.1-4_amd64.deb 67339c5a43fd1dd7356c814e692d684d8e1dddc05211f811ac2d0af72d6b5aee 5256 cd-hit_4.8.1-4_amd64.buildinfo 12195a55d15de83d3cabddee5283b7b9247dbf55fc0cbdfdf93d49140e2b289f 525000 cd-hit_4.8.1-4_amd64.deb Files: 67ed2dc954217b8d14c0f8cc82365e83 1120 science optional cd-hit_4.8.1-4.dsc ca0768fab1b5d4b73c608f949da86119 8136 science optional cd-hit_4.8.1-4.debian.tar.xz 7b06ab4d179f011dc813ae8e8af099d5 2039388 debug optional cd-hit-dbgsym_4.8.1-4_amd64.deb f85ca1a1750fd0fd70f9981703aac9fb 5256 science optional cd-hit_4.8.1-4_amd64.buildinfo c5ef377000f21cebd69149ec3021487e 525000 science optional cd-hit_4.8.1-4_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Thu, 09 Jul 2026 04:52:04 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: cd-hit Binary: cd-hit cd-hit-dbgsym Architecture: amd64 source Version: 4.8.1-4 Checksums-Md5: 67ed2dc954217b8d14c0f8cc82365e83 1120 cd-hit_4.8.1-4.dsc 7b06ab4d179f011dc813ae8e8af099d5 2039388 cd-hit-dbgsym_4.8.1-4_amd64.deb c5ef377000f21cebd69149ec3021487e 525000 cd-hit_4.8.1-4_amd64.deb Checksums-Sha1: 37f6134476f35d6558cf03c25bd9e55dd0294634 1120 cd-hit_4.8.1-4.dsc 02e0288c15b7f2622a6af9fdf61d78feca307707 2039388 cd-hit-dbgsym_4.8.1-4_amd64.deb 0510b5400f5febe9db8d1cb9756b56ecbaba13cb 525000 cd-hit_4.8.1-4_amd64.deb Checksums-Sha256: 2c4d4217becce49493270161f6bc2bd8add41c6d971a52ae202edea05f7f40a4 1120 cd-hit_4.8.1-4.dsc ae15e45442db0d5743afac627eee0608904c8e5ca4978876ebcc3f86f62401c9 2039388 cd-hit-dbgsym_4.8.1-4_amd64.deb 12195a55d15de83d3cabddee5283b7b9247dbf55fc0cbdfdf93d49140e2b289f 525000 cd-hit_4.8.1-4_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 09 Jul 2026 04:52:04 +0000 Build-Path: /build/cd-hit-Lcy5Cr/cd-hit-4.8.1 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-3), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3), binutils (= 2.46.50.20260617-1), binutils-common (= 2.46.50.20260617-1), binutils-x86-64-linux-gnu (= 2.46.50.20260617-1), bsdextrautils (= 2.42.2-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.3.0-1), cpp-15-x86-64-linux-gnu (= 15.3.0-1), cpp-x86-64-linux-gnu (= 4:15.2.0-5+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.3), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.47-4), findutils (= 4.10.0-4), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.3.0-1), g++-15-x86-64-linux-gnu (= 15.3.0-1), g++-x86-64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.3.0-1), gcc-15-base (= 15.3.0-1), gcc-15-x86-64-linux-gnu (= 15.3.0-1), gcc-16-base (= 16.1.0-2), gcc-x86-64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 1.0-3), gettext-base (= 1.0-3), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.13-1), help2man (= 1.49.3), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.1.0-2), libatomic1 (= 16.1.0-2), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46.50.20260617-1), libblkid1 (= 2.42.2-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-17), libc-dev-bin (= 2.42-17), libc-gconv-modules-extra (= 2.42-17), libc6 (= 2.42-17), libc6-dev (= 2.42-17), libcap-ng0 (= 0.9.3-1+b1), libcc1-0 (= 16.1.0-2), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46.50.20260617-1), libctf0 (= 2.46.50.20260617-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-15-dev (= 15.3.0-1), libgcc-s1 (= 16.1.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.1.0-2), libgprofng0 (= 2.46.50.20260617-1), libhwasan0 (= 16.1.0-2), libisl23 (= 0.27-2), libitm1 (= 16.1.0-2), libjansson4 (= 2.15.1-1), liblocale-gettext-perl (= 1.07-10+b1), liblsan0 (= 16.1.0-2), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.2-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.46-1+b2), libperl5.44 (= 5.44.0~rc2-1), libpipeline1 (= 1.5.8-3), libquadmath0 (= 16.1.0-2), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.10-1), libsframe3 (= 2.46.50.20260617-1), libsmartcols1 (= 2.42.2-1), libssl3t64 (= 3.6.3-1), libstdc++-15-dev (= 15.3.0-1), libstdc++6 (= 16.1.0-2), libsystemd0 (= 261.1-2), libtinfo6 (= 6.6+20260608-2), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-2), libubsan1 (= 16.1.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 261.1-2), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-1), libxml2-16 (= 2.15.3+dfsg-1), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 7.1.3-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.3-1), patch (= 2.8-2), perl (= 5.44.0~rc2-1), perl-base (= 5.44.0~rc2-1), perl-modules-5.44 (= 5.44.0~rc2-1), po-debconf (= 1.0.22), rpcsvc-proto (= 1.4.4-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), util-linux (= 2.42.2-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1629448796" +------------------------------------------------------------------------------+ | Package contents Thu, 09 Jul 2026 04:52:04 +0000 | +------------------------------------------------------------------------------+ cd-hit-dbgsym_4.8.1-4_amd64.deb ------------------------------- new Debian package, version 2.0. size 2039388 bytes: control archive=852 bytes. 572 bytes, 12 lines control 719 bytes, 7 lines md5sums Package: cd-hit-dbgsym Source: cd-hit Version: 4.8.1-4 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 2332 Depends: cd-hit (= 4.8.1-4) Section: debug Priority: optional Description: debug symbols for cd-hit Build-Ids: 4cb8c35b1c35ac65ee5aafbb1a2075e853b14198 808941a15d5def71e3ef39e6d9840d744c621104 8d322fb019fa9dbc0809b5427fc8435093f55b2c 9bef3377c93330939708cf983d034c2520cb44ab af879284473b9e69bc230e34f197412d3c241e97 bfc85be320807fb258b5356a2474cc47ab6c6faa drwxr-xr-x root/root 0 2021-08-20 08:39 ./ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/4c/ -rw-r--r-- root/root 368520 2021-08-20 08:39 ./usr/lib/debug/.build-id/4c/b8c35b1c35ac65ee5aafbb1a2075e853b14198.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/80/ -rw-r--r-- root/root 367864 2021-08-20 08:39 ./usr/lib/debug/.build-id/80/8941a15d5def71e3ef39e6d9840d744c621104.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/8d/ -rw-r--r-- root/root 368576 2021-08-20 08:39 ./usr/lib/debug/.build-id/8d/322fb019fa9dbc0809b5427fc8435093f55b2c.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/9b/ -rw-r--r-- root/root 374360 2021-08-20 08:39 ./usr/lib/debug/.build-id/9b/ef3377c93330939708cf983d034c2520cb44ab.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/af/ -rw-r--r-- root/root 372512 2021-08-20 08:39 ./usr/lib/debug/.build-id/af/879284473b9e69bc230e34f197412d3c241e97.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/bf/ -rw-r--r-- root/root 368960 2021-08-20 08:39 ./usr/lib/debug/.build-id/bf/c85be320807fb258b5356a2474cc47ab6c6faa.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 147456 2021-08-20 08:39 ./usr/lib/debug/.dwz/x86_64-linux-gnu/cd-hit.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/share/doc/cd-hit-dbgsym -> cd-hit cd-hit_4.8.1-4_amd64.deb ------------------------ new Debian package, version 2.0. size 525000 bytes: control archive=2156 bytes. 916 bytes, 17 lines control 3461 bytes, 52 lines md5sums Package: cd-hit Version: 4.8.1-4 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1437 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4), perl:any Section: science Priority: optional Homepage: http://weizhongli-lab.org/cd-hit/ Description: suite of programs designed to quickly group sequences cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information. drwxr-xr-x root/root 0 2021-08-20 08:39 ./ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/bin/ lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit -> ../lib/cd-hit/cd-hit lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-2d -> ../lib/cd-hit/cd-hit-2d lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-2d-para -> ../lib/cd-hit/cd-hit-2d-para.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-454 -> ../lib/cd-hit/cd-hit-454 lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-div -> ../lib/cd-hit/cd-hit-div.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-est -> ../lib/cd-hit/cd-hit-est lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-est-2d -> ../lib/cd-hit/cd-hit-est-2d lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-para -> ../lib/cd-hit/cd-hit-para.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cdhit -> cd-hit lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cdhit-2d -> cd-hit-2d lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cdhit-454 -> cd-hit-454 lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cdhit-est -> cd-hit-est lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cdhit-est-2d -> cd-hit-est-2d lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr2tree -> ../lib/cd-hit/clstr2tree.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_merge -> ../lib/cd-hit/clstr_merge.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_merge_noorder -> ../lib/cd-hit/clstr_merge_noorder.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_reduce -> ../lib/cd-hit/clstr_reduce.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_renumber -> ../lib/cd-hit/clstr_renumber.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_rev -> ../lib/cd-hit/clstr_rev.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_sort_by -> ../lib/cd-hit/clstr_sort_by.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_sort_prot_by -> ../lib/cd-hit/clstr_sort_prot_by.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/make_multi_seq -> ../lib/cd-hit/make_multi_seq.pl drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/cd-hit/ -rwxr-xr-x root/root 3152 2021-08-20 08:39 ./usr/lib/cd-hit/FET.pl -rwxr-xr-x root/root 147624 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit -rwxr-xr-x root/root 147624 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-2d -rwxr-xr-x root/root 12596 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-2d-para.pl -rwxr-xr-x root/root 147720 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-454 -rwxr-xr-x root/root 2126 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-clstr_2_blm8.pl -rwxr-xr-x root/root 147624 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-div -rwxr-xr-x root/root 992 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-div.pl -rwxr-xr-x root/root 147624 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-est -rwxr-xr-x root/root 151720 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-est-2d -rwxr-xr-x root/root 11859 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-para.pl -rwxr-xr-x root/root 952 2021-08-20 08:39 ./usr/lib/cd-hit/clstr2tree.pl -rwxr-xr-x root/root 1209 2021-08-20 08:39 ./usr/lib/cd-hit/clstr2txt.pl -rwxr-xr-x root/root 4503 2021-08-20 08:39 ./usr/lib/cd-hit/clstr2xml.pl -rwxr-xr-x root/root 464 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_cut.pl -rwxr-xr-x root/root 3258 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_list.pl -rwxr-xr-x root/root 1129 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_list_sort.pl -rwxr-xr-x root/root 3199 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_merge.pl -rwxr-xr-x root/root 2162 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_merge_noorder.pl -rwxr-xr-x root/root 3465 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_quality_eval.pl -rwxr-xr-x root/root 2335 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_quality_eval_by_link.pl -rwxr-xr-x root/root 1000 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_reduce.pl -rwxr-xr-x root/root 196 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_renumber.pl -rwxr-xr-x root/root 554 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_rep.pl -rwxr-xr-x root/root 1160 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_reps_faa_rev.pl -rwxr-xr-x root/root 1620 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_rev.pl -rwxr-xr-x root/root 387 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_select.pl -rwxr-xr-x root/root 555 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_select_rep.pl -rwxr-xr-x root/root 779 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_size_histogram.pl -rwxr-xr-x root/root 725 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_size_stat.pl -rwxr-xr-x root/root 806 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_sort_by.pl -rwxr-xr-x root/root 1291 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_sort_prot_by.pl -rwxr-xr-x root/root 2928 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_sql_tbl.pl -rwxr-xr-x root/root 1103 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_sql_tbl_sort.pl -rwxr-xr-x root/root 1670 2021-08-20 08:39 ./usr/lib/cd-hit/make_multi_seq.pl -rwxr-xr-x root/root 3668 2021-08-20 08:39 ./usr/lib/cd-hit/plot_2d.pl -rwxr-xr-x root/root 2190 2021-08-20 08:39 ./usr/lib/cd-hit/plot_len1.pl drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/doc-base/ -rw-r--r-- root/root 753 2021-08-10 20:30 ./usr/share/doc-base/cd-hit.cd-hit drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/doc/cd-hit/ -rw-r--r-- root/root 771 2021-08-10 20:30 ./usr/share/doc/cd-hit/README.Debian -rw-r--r-- root/root 421458 2019-02-28 20:13 ./usr/share/doc/cd-hit/cdhit-user-guide.pdf -rw-r--r-- root/root 807 2021-08-20 08:39 ./usr/share/doc/cd-hit/changelog.Debian.gz -rw-r--r-- root/root 962 2019-02-28 20:13 ./usr/share/doc/cd-hit/changelog.gz -rw-r--r-- root/root 1151 2021-08-20 08:39 ./usr/share/doc/cd-hit/copyright drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/doc/cd-hit/examples/ -rw-r--r-- root/root 2269 2021-08-10 20:30 ./usr/share/doc/cd-hit/examples/example.fa drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/man/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/man/man1/ -rw-r--r-- root/root 1145 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-2d-para.1.gz -rw-r--r-- root/root 1699 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-2d.1.gz -rw-r--r-- root/root 1347 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-454.1.gz -rw-r--r-- root/root 227 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-div.1.gz -rw-r--r-- root/root 2175 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-est-2d.1.gz -rw-r--r-- root/root 2199 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-est.1.gz -rw-r--r-- root/root 1109 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-para.1.gz -rw-r--r-- root/root 1778 2021-08-20 08:39 ./usr/share/man/man1/cd-hit.1.gz +------------------------------------------------------------------------------+ | Post Build Thu, 09 Jul 2026 04:52:05 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Thu, 09 Jul 2026 04:52:05 +0000 | +------------------------------------------------------------------------------+ Purging /build/cd-hit-Lcy5Cr Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 09 Jul 2026 04:52:06 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 21220 Build-Time: 26 Distribution: perl-5.44-throwaway Host Architecture: amd64 Install-Time: 7 Job: /srv/debomatic/incoming/cd-hit_4.8.1-4.dsc Machine Architecture: amd64 Package: cd-hit Package-Time: 37 Source-Version: 4.8.1-4 Space: 21220 Status: successful Version: 4.8.1-4 -------------------------------------------------------------------------------- Finished at 2026-07-09T04:52:04Z Build needed 00:00:37, 21220k disk space