sbuild (Debian sbuild) 0.91.10 (27 June 2026) on carme.larted.org.uk +==============================================================================+ | any2fasta 0.8.1-1 (amd64) Thu, 09 Jul 2026 02:34:35 +0000 | +==============================================================================+ Package: any2fasta Version: 0.8.1-1 Source Version: 0.8.1-1 Distribution: perl-5.44-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Thu, 09 Jul 2026 02:34:37 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup any2fasta_0.8.1-1 perl-5.44-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup any2fasta_0.8.1-1 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Thu, 09 Jul 2026 02:34:37 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Get:1 file:/srv/reprepro perl-5.44 InRelease [3039 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://deb.debian.org/debian sid InRelease Get:4 file:/srv/reprepro perl-5.44/main amd64 Packages [606 kB] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Thu, 09 Jul 2026 02:34:40 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/any2fasta_0.8.1-1.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 09 Jul 2026 02:34:40 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential Filtered Build-Depends: debhelper-compat (= 13), build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/any2fasta-keL6Y9/resolver-ImZVvv/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/any2fasta-keL6Y9/resolver-ImZVvv/apt_archive ./ InRelease Get:2 copy:/build/any2fasta-keL6Y9/resolver-ImZVvv/apt_archive ./ Release [609 B] Ign:3 copy:/build/any2fasta-keL6Y9/resolver-ImZVvv/apt_archive ./ Release.gpg Get:4 copy:/build/any2fasta-keL6Y9/resolver-ImZVvv/apt_archive ./ Sources [600 B] Get:5 copy:/build/any2fasta-keL6Y9/resolver-ImZVvv/apt_archive ./ Packages [639 B] Fetched 1848 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.9 MB of archives. After this operation, 54.3 MB of additional disk space will be used. Get:1 copy:/build/any2fasta-keL6Y9/resolver-ImZVvv/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [856 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-3 [332 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.2-1 [100.0 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-3 [820 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.3 [77.3 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-3 [2658 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.3 [934 kB] Preconfiguring packages ... Fetched 11.9 MB in 0s (98.0 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-3_amd64.deb ... Unpacking gettext-base (1.0-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_amd64.deb ... 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Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-3) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.47-4) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up autopoint (1.0-3) ... Setting up autoconf (2.73-2) ... Setting up dwz (0.16-4) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-3) ... Setting up libtool (2.5.4-11) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (22) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (14.3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-17) ... +------------------------------------------------------------------------------+ | Check architectures Thu, 09 Jul 2026 02:34:46 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Thu, 09 Jul 2026 02:34:46 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.46.50.20260617-1 dpkg-dev_1.23.7 g++-15_15.3.0-1 gcc-15_15.3.0-1 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 linux-libc-dev_7.1.3-1 Package versions: apt_3.3.1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.46.50.20260617-1 binutils-common_2.46.50.20260617-1 binutils-x86-64-linux-gnu_2.46.50.20260617-1 bsdextrautils_2.42.2-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.3.0-1 cpp-15-x86-64-linux-gnu_15.3.0-1 cpp-x86-64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-5 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.47-4 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.3.0-1 g++-15-x86-64-linux-gnu_15.3.0-1 g++-x86-64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.3.0-1 gcc-15-base_15.3.0-1 gcc-15-x86-64-linux-gnu_15.3.0-1 gcc-16-base_16.1.0-2 gcc-x86-64-linux-gnu_4:15.2.0-5+b1 gettext_1.0-3 gettext-base_1.0-3 gnupg_2.4.9-5 gnupg-l10n_2.4.9-5 gpg_2.4.9-5 gpg-agent_2.4.9-5 gpgconf_2.4.9-5 gpgsm_2.4.9-5 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.1 libarchive-zip-perl_1.68-1 libasan8_16.1.0-2 libassuan9_3.0.2-2+b2 libatomic1_16.1.0-2 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46.50.20260617-1 libblkid1_2.42.2-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-17 libc-dev-bin_2.42-17 libc-gconv-modules-extra_2.42-17 libc6_2.42-17 libc6-dev_2.42-17 libcap-ng0_0.9.3-1+b1 libcc1-0_16.1.0-2 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46.50.20260617-1 libctf0_2.46.50.20260617-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdpkg-perl_1.23.7 libeatmydata1_131-2+b2 libelf1t64_0.195-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-15-dev_15.3.0-1 libgcc-s1_16.1.0-2 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.1.0-2 libgpg-error0_1.61-3 libgprofng0_2.46.50.20260617-1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.1.0-2 libidn2-0_2.3.8-5 libisl23_0.27-2 libitm1_16.1.0-2 libjansson4_2.15.1-1 libksba8_1.8.0-3 libldap2_2.6.13+dfsg-1+b1 liblsan0_16.1.0-2 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.2-3 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-8 libperl5.44_5.44.0~rc2-1 libpipeline1_1.5.8-3 libquadmath0_16.1.0-2 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.0-2+b1 libselinux1_3.10-1 libsframe3_2.46.50.20260617-1 libsmartcols1_2.42.2-1 libsqlite3-0_3.53.3-1 libssl3t64_3.6.3-1 libstdc++-15-dev_15.3.0-1 libstdc++6_16.1.0-2 libsystemd0_261.1-2 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.5.4-11 libtsan2_16.1.0-2 libubsan1_16.1.0-2 libuchardet0_0.0.8-2+b2 libudev1_261.1-2 libunistring5_1.4.2-1 libuuid1_2.42.2-1 libxml2-16_2.15.3+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.1.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.3-1 patch_2.8-2 perl_5.44.0~rc2-1 perl-base_5.44.0~rc2-1 perl-modules-5.40_5.40.1-8 perl-modules-5.44_5.44.0~rc2-1 pinentry-curses_1.3.2-4 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.4.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 util-linux_2.42.2-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Thu, 09 Jul 2026 02:34:46 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: any2fasta Binary: any2fasta, any2fasta-examples Architecture: all Version: 0.8.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/tseemann/any2fasta Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/any2fasta Vcs-Git: https://salsa.debian.org/med-team/any2fasta.git Testsuite: autopkgtest Testsuite-Triggers: bats Build-Depends: debhelper-compat (= 13) Package-List: any2fasta deb science optional arch=all any2fasta-examples deb science optional arch=all Checksums-Sha1: 0d3bdd90b1f1d2570d44d5ba31fc4703b63d80fa 6842579 any2fasta_0.8.1.orig.tar.gz b5f644be214540a3c02cc9ae7534e3d38a23e8b3 2876 any2fasta_0.8.1-1.debian.tar.xz Checksums-Sha256: 60715fc0d65235aa9b8ba8ebdd7062c440ef71e870e3e7d1512ebefcaca80ce5 6842579 any2fasta_0.8.1.orig.tar.gz 7fbd160fb568d15769cddd8c9ad7444d8dc162bb40e73ca579e9857ec01b1f9e 2876 any2fasta_0.8.1-1.debian.tar.xz Files: 1e4666ee08f73e2b32dc01ab9102eb2c 6842579 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signature for ./any2fasta_0.8.1-1.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./any2fasta_0.8.1-1.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting any2fasta in /build/any2fasta-keL6Y9/any2fasta-0.8.1 dpkg-source: info: unpacking any2fasta_0.8.1.orig.tar.gz dpkg-source: info: unpacking any2fasta_0.8.1-1.debian.tar.xz clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Thu, 09 Jul 2026 02:34:48 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network any2fasta_0.8.1-1 perl-5.44-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network any2fasta_0.8.1-1 perl-5.44-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/any2fasta-keL6Y9/any2fasta-0.8.1 SCHROOT_ALIAS_NAME=perl-5.44-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.44-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.44-amd64-debomatic-906655c1-9785-4f93-ad2e-aea944760f6e SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package any2fasta dpkg-buildpackage: info: source version 0.8.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building any2fasta using existing ../any2fasta_0.8.1.orig.tar.gz dpkg-source: info: building any2fasta in ../any2fasta_0.8.1-1.debian.tar.xz dpkg-source: info: building any2fasta in ../any2fasta_0.8.1-1.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/any2fasta-keL6Y9/any2fasta-0.8.1' dh_installexamples sed -i 's:$dir/../$name:/usr/bin/any2fasta:' debian/any2fasta-examples/usr/share/doc/any2fasta/examples/test.sh make[1]: Leaving directory '/build/any2fasta-keL6Y9/any2fasta-0.8.1' dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/any2fasta-keL6Y9/any2fasta-0.8.1' dh_compress -Xtest.fna -Xtest.fna.zst make[1]: Leaving directory '/build/any2fasta-keL6Y9/any2fasta-0.8.1' dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'any2fasta-examples' in '../any2fasta-examples_0.8.1-1_all.deb'. dpkg-deb: building package 'any2fasta' in '../any2fasta_0.8.1-1_all.deb'. dpkg-genbuildinfo -O../any2fasta_0.8.1-1_amd64.buildinfo dpkg-genchanges -O../any2fasta_0.8.1-1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2026-07-09T02:35:08Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 09 Jul 2026 02:35:08 +0000 | +------------------------------------------------------------------------------+ any2fasta_0.8.1-1_amd64.changes: -------------------------------- Format: 1.8 Date: Fri, 10 Apr 2026 22:20:17 +0200 Source: any2fasta Binary: any2fasta any2fasta-examples Architecture: source all Version: 0.8.1-1 Distribution: perl-5.44-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: any2fasta - convert various sequence formats to FASTA any2fasta-examples - convert various sequence formats to FASTA (example data) Changes: any2fasta (0.8.1-1) unstable; urgency=medium . * d/watch: version=5 * New upstream version * Standards-Version: 4.7.4 (routine-update) * debputy lint --auto-fix (routine-update) Checksums-Sha1: 89a4b351aadcc32eec54bdb2f882c7a1c318f3e0 1163 any2fasta_0.8.1-1.dsc 0d3bdd90b1f1d2570d44d5ba31fc4703b63d80fa 6842579 any2fasta_0.8.1.orig.tar.gz b5f644be214540a3c02cc9ae7534e3d38a23e8b3 2876 any2fasta_0.8.1-1.debian.tar.xz 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a04a8ceb3f85abe5122aaed0efcc116ec9c1b35f 6626512 any2fasta-examples_0.8.1-1_all.deb bada72bc415ed869e9efe9050362e30570b2ec50 8272 any2fasta_0.8.1-1_all.deb Checksums-Sha256: b65f2fbcc4d62c4748bb2974559acd4691d315e53f1749065adf1a7350e7f31a 1163 any2fasta_0.8.1-1.dsc d2ecd2e8251975c193c9261e252bf41cca006e6ee98a6ec76e7d50e74f624d0e 6626512 any2fasta-examples_0.8.1-1_all.deb 70048a77e3bf47af71f4e02f8bcdc2a92534a8eaf3a041e6759c93c1c71a4ec5 8272 any2fasta_0.8.1-1_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 09 Jul 2026 02:35:07 +0000 Build-Path: /build/any2fasta-keL6Y9/any2fasta-0.8.1 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-3), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3), binutils (= 2.46.50.20260617-1), binutils-common (= 2.46.50.20260617-1), binutils-x86-64-linux-gnu (= 2.46.50.20260617-1), bsdextrautils (= 2.42.2-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.3.0-1), cpp-15-x86-64-linux-gnu (= 15.3.0-1), cpp-x86-64-linux-gnu (= 4:15.2.0-5+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.3), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.47-4), findutils (= 4.10.0-4), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.3.0-1), g++-15-x86-64-linux-gnu (= 15.3.0-1), g++-x86-64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.3.0-1), gcc-15-base (= 15.3.0-1), gcc-15-x86-64-linux-gnu (= 15.3.0-1), gcc-16-base (= 16.1.0-2), gcc-x86-64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 1.0-3), gettext-base (= 1.0-3), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.1.0-2), libatomic1 (= 16.1.0-2), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46.50.20260617-1), libblkid1 (= 2.42.2-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-17), libc-dev-bin (= 2.42-17), libc-gconv-modules-extra (= 2.42-17), libc6 (= 2.42-17), libc6-dev (= 2.42-17), libcap-ng0 (= 0.9.3-1+b1), libcc1-0 (= 16.1.0-2), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46.50.20260617-1), libctf0 (= 2.46.50.20260617-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-15-dev (= 15.3.0-1), libgcc-s1 (= 16.1.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.1.0-2), libgprofng0 (= 2.46.50.20260617-1), libhwasan0 (= 16.1.0-2), libisl23 (= 0.27-2), libitm1 (= 16.1.0-2), libjansson4 (= 2.15.1-1), liblsan0 (= 16.1.0-2), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.2-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.46-1+b2), libperl5.44 (= 5.44.0~rc2-1), libpipeline1 (= 1.5.8-3), libquadmath0 (= 16.1.0-2), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.10-1), libsframe3 (= 2.46.50.20260617-1), libsmartcols1 (= 2.42.2-1), libssl3t64 (= 3.6.3-1), libstdc++-15-dev (= 15.3.0-1), libstdc++6 (= 16.1.0-2), libsystemd0 (= 261.1-2), libtinfo6 (= 6.6+20260608-2), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-2), libubsan1 (= 16.1.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 261.1-2), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-1), libxml2-16 (= 2.15.3+dfsg-1), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 7.1.3-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.3-1), patch (= 2.8-2), perl (= 5.44.0~rc2-1), perl-base (= 5.44.0~rc2-1), perl-modules-5.44 (= 5.44.0~rc2-1), po-debconf (= 1.0.22), rpcsvc-proto (= 1.4.4-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), util-linux (= 2.42.2-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1775852417" +------------------------------------------------------------------------------+ | Package contents Thu, 09 Jul 2026 02:35:08 +0000 | +------------------------------------------------------------------------------+ any2fasta-examples_0.8.1-1_all.deb ---------------------------------- new Debian package, version 2.0. size 6626512 bytes: control archive=1572 bytes. 1464 bytes, 37 lines control 1578 bytes, 20 lines md5sums Package: any2fasta-examples Source: any2fasta Version: 0.8.1-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 6553 Section: science Priority: optional Multi-Arch: foreign Homepage: https://github.com/tseemann/any2fasta Description: convert various sequence formats to FASTA (example data) Established tools like readseq and seqret from EMBOSS, both create mangled IDs containing | or . characters, and there is no way to fix this behaviour. This resultes in inconsitences between .gbk and .fna versions of files in pipelines. . This script uses only core Perl modules, has no other dependencies like Bioperl or Biopython, and runs very quickly. . It supports the following input formats: . 1. Genbank flat file, typically .gb, .gbk, .gbff (starts with LOCUS) 2. EMBL flat file, typically .embl, (starts with ID) 3. GFF with sequence, typically .gff, .gff3 (starts with ##gff) 4. FASTA DNA, typically .fasta, .fa, .fna, .ffn (starts with >) 5. FASTQ DNA, typically .fastq, .fq (starts with @) 6. CLUSTAL alignments, typically .clw, .clu (starts with CLUSTAL or MUSCLE) 7. STOCKHOLM alignments, typically .sth (starts with # STOCKHOLM) 8. GFA assembly graph, typically .gfa (starts with ^[A-Z]\t) . Files may be compressed with: . 1. gzip, typically .gz 2. bzip2, typically .bz2 3. zip, typically .zip . This package contains some example data for testing. drwxr-xr-x root/root 0 2026-04-10 20:20 ./ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/any2fasta-examples/ -rw-r--r-- root/root 278 2026-04-10 20:20 ./usr/share/doc/any2fasta-examples/README.test -rw-r--r-- root/root 347 2026-04-10 20:20 ./usr/share/doc/any2fasta-examples/changelog.Debian.gz -rw-r--r-- root/root 871 2026-04-10 20:20 ./usr/share/doc/any2fasta-examples/copyright -rw-r--r-- root/root 382 2026-04-10 20:20 ./usr/share/doc/any2fasta-examples/run-unit-test drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/any2fasta/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/any2fasta/examples/ -rw-r--r-- root/root 619 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.clw -rw-r--r-- root/root 3610 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.embl -rw-r--r-- root/root 60003 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.fna -rw-r--r-- root/root 17006 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.fna.bz2 -rw-r--r-- root/root 18265 2026-04-10 20:20 ./usr/share/doc/any2fasta/examples/test.fna.gz -rw-r--r-- root/root 16404 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.fna.xz -rw-r--r-- root/root 18413 2026-04-10 20:20 ./usr/share/doc/any2fasta/examples/test.fna.zip -rw-r--r-- root/root 19103 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.fna.zst -rw-r--r-- root/root 176153 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.fq.gz -rw-r--r-- root/root 3071491 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.gbk.gz -rw-r--r-- root/root 1570339 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.gfa.gz -rw-r--r-- root/root 1665250 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.gff.gz -rw-r--r-- root/root 1960 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.noseq.gff -rw-r--r-- root/root 46495 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.pdb.gz -rwxr-xr-x root/root 3539 2026-04-10 20:20 ./usr/share/doc/any2fasta/examples/test.sh -rw-r--r-- root/root 1106 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.sth any2fasta_0.8.1-1_all.deb ------------------------- new Debian package, version 2.0. size 8272 bytes: control archive=1140 bytes. 1381 bytes, 35 lines control 269 bytes, 4 lines md5sums Package: any2fasta Version: 0.8.1-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 23 Depends: perl:any Section: science Priority: optional Multi-Arch: foreign Homepage: https://github.com/tseemann/any2fasta Description: convert various sequence formats to FASTA Established tools like readseq and seqret from EMBOSS, both create mangled IDs containing | or . characters, and there is no way to fix this behaviour. This resultes in inconsitences between .gbk and .fna versions of files in pipelines. . This script uses only core Perl modules, has no other dependencies like Bioperl or Biopython, and runs very quickly. . It supports the following input formats: . 1. Genbank flat file, typically .gb, .gbk, .gbff (starts with LOCUS) 2. EMBL flat file, typically .embl, (starts with ID) 3. GFF with sequence, typically .gff, .gff3 (starts with ##gff) 4. FASTA DNA, typically .fasta, .fa, .fna, .ffn (starts with >) 5. FASTQ DNA, typically .fastq, .fq (starts with @) 6. CLUSTAL alignments, typically .clw, .clu (starts with CLUSTAL or MUSCLE) 7. STOCKHOLM alignments, typically .sth (starts with # STOCKHOLM) 8. GFA assembly graph, typically .gfa (starts with ^[A-Z]\t) . Files may be compressed with: . 1. gzip, typically .gz 2. bzip2, typically .bz2 3. zip, typically .zip drwxr-xr-x root/root 0 2026-04-10 20:20 ./ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/bin/ -rwxr-xr-x root/root 10828 2026-04-10 20:20 ./usr/bin/any2fasta drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/any2fasta/ -rw-r--r-- root/root 2273 2025-12-30 01:06 ./usr/share/doc/any2fasta/README.md.gz -rw-r--r-- root/root 347 2026-04-10 20:20 ./usr/share/doc/any2fasta/changelog.Debian.gz -rw-r--r-- root/root 871 2026-04-10 20:20 ./usr/share/doc/any2fasta/copyright +------------------------------------------------------------------------------+ | Post Build Thu, 09 Jul 2026 02:35:09 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Thu, 09 Jul 2026 02:35:09 +0000 | +------------------------------------------------------------------------------+ Purging /build/any2fasta-keL6Y9 Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 09 Jul 2026 02:35:10 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 43356 Build-Time: 20 Distribution: perl-5.44-throwaway Host Architecture: amd64 Install-Time: 6 Job: /srv/debomatic/incoming/any2fasta_0.8.1-1.dsc Machine Architecture: amd64 Package: any2fasta Package-Time: 33 Source-Version: 0.8.1-1 Space: 43356 Status: successful Version: 0.8.1-1 -------------------------------------------------------------------------------- Finished at 2026-07-09T02:35:08Z Build needed 00:00:33, 43356k disk space