sbuild (Debian sbuild) 0.91.8 (14 April 2026) on carme.larted.org.uk

+==============================================================================+
| transdecoder 6.0.0-2 (amd64)                 Mon, 04 May 2026 16:01:41 +0000 |
+==============================================================================+

Package: transdecoder
Version: 6.0.0-2
Source Version: 6.0.0-2
Distribution: perl-5.42-throwaway
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: full

I: Setting up the chroot...
I: Creating chroot session...
I: Setting up log color...

+------------------------------------------------------------------------------+
| Chroot Setup Commands                        Mon, 04 May 2026 16:01:42 +0000 |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup transdecoder_6.0.0-2 perl-5.42-throwaway amd64
---------------------------------------------------------------------------------------------------------------------


I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup transdecoder_6.0.0-2 perl-5.42-throwaway amd64'.

Finished processing commands.
--------------------------------------------------------------------------------
I: Setting up apt archive...

+------------------------------------------------------------------------------+
| Update chroot                                Mon, 04 May 2026 16:01:42 +0000 |
+------------------------------------------------------------------------------+

Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B]
Hit:2 http://deb.debian.org/debian unstable InRelease
Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B]
Hit:3 http://deb.debian.org/debian sid InRelease
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                           Mon, 04 May 2026 16:01:44 +0000 |
+------------------------------------------------------------------------------+


Local sources
-------------

/srv/debomatic/incoming/transdecoder_6.0.0-2.dsc exists in /srv/debomatic/incoming; copying to chroot

+------------------------------------------------------------------------------+
| Install package build dependencies           Mon, 04 May 2026 16:01:44 +0000 |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), liburi-perl, help2man, ncbi-blast+, hmmer, r-base-core, r-cran-ggplot2, diamond-aligner, build-essential
Filtered Build-Depends: debhelper-compat (= 13), liburi-perl, help2man, ncbi-blast+, hmmer, r-base-core, r-cran-ggplot2, diamond-aligner, build-essential
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ InRelease
Get:2 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ Release [609 B]
Ign:3 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ Release.gpg
Get:4 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ Sources [744 B]
Get:5 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ Packages [728 B]
Fetched 2081 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Solving dependencies...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner dwz file
  fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
  gettext-base groff-base help2man hmmer intltool-debian isa-support
  libarchive-zip-perl libblas3 libbrotli1 libcairo2 libcom-err2 libcurl4t64
  libdatrie1 libdebhelper-perl libdeflate0 libdivsufsort3 libelf1t64 libexpat1
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgfortran5 libglib2.0-0t64 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
  libice6 libicu78 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 liblapack3 liblerc4 liblmdb0
  liblocale-gettext-perl libmagic-mgc libmagic1t64 libmbedcrypto16
  libmbedtls21 libmbedx509-7 libncbi-vdb3 libnghttp2-14 libnghttp3-9
  libngtcp2-16 libngtcp2-crypto-ossl0 libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper2 libpipeline1 libpixman-1-0
  libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal
  libpython3.13-stdlib libsharpyuv0 libsm6 libssh2-1t64 libtcl8.6
  libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6
  libtirpc-common libtirpc3t64 libtk8.6 libtool libuchardet0 liburi-perl
  libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
  libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64
  m4 man-db media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase openssl
  po-debconf procps python3 python3-minimal python3.13 python3.13-minimal
  r-base-core r-cran-cli r-cran-cpp11 r-cran-farver r-cran-ggplot2 r-cran-glue
  r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lifecycle r-cran-r6
  r-cran-rcolorbrewer r-cran-rlang r-cran-s7 r-cran-scales r-cran-vctrs
  r-cran-viridislite r-cran-withr sensible-utils sse4.2-support tzdata ucf
  unzip x11-common xdg-utils zip
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev gnulib-l10n groff hmmer-doc
  low-memory-monitor krb5-doc krb5-user tcl8.6 tk8.6 libtool-doc gfortran
  | fortran95-compiler libbusiness-isbn-perl libmime-base32-perl
  libregexp-ipv6-perl libwww-perl m4-doc apparmor less www-browser
  libmail-box-perl python3-doc python3-tk python3-venv python3.13-venv
  python3.13-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib
  r-base-html
Recommended packages:
  med-config curl | wget | lynx libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs krb5-locales publicsuffix libltdl-dev
  libmail-sendmail-perl psmisc linux-sysctl-defaults r-recommended r-base-dev
  r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner dwz file
  fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
  gettext-base groff-base help2man hmmer intltool-debian isa-support
  libarchive-zip-perl libblas3 libbrotli1 libcairo2 libcom-err2 libcurl4t64
  libdatrie1 libdebhelper-perl libdeflate0 libdivsufsort3 libelf1t64 libexpat1
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgfortran5 libglib2.0-0t64 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
  libice6 libicu78 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 liblapack3 liblerc4 liblmdb0
  liblocale-gettext-perl libmagic-mgc libmagic1t64 libmbedcrypto16
  libmbedtls21 libmbedx509-7 libncbi-vdb3 libnghttp2-14 libnghttp3-9
  libngtcp2-16 libngtcp2-crypto-ossl0 libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper2 libpipeline1 libpixman-1-0
  libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal
  libpython3.13-stdlib libsharpyuv0 libsm6 libssh2-1t64 libtcl8.6
  libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6
  libtirpc-common libtirpc3t64 libtk8.6 libtool libuchardet0 liburi-perl
  libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
  libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64
  m4 man-db media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase openssl
  po-debconf procps python3 python3-minimal python3.13 python3.13-minimal
  r-base-core r-cran-cli r-cran-cpp11 r-cran-farver r-cran-ggplot2 r-cran-glue
  r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lifecycle r-cran-r6
  r-cran-rcolorbrewer r-cran-rlang r-cran-s7 r-cran-scales r-cran-vctrs
  r-cran-viridislite r-cran-withr sbuild-build-depends-main-dummy
  sensible-utils sse4.2-support tzdata ucf unzip x11-common xdg-utils zip
0 upgraded, 150 newly installed, 0 to remove and 0 not upgraded.
Need to get 121 MB/121 MB of archives.
After this operation, 363 MB of additional disk space will be used.
Get:1 file:/srv/reprepro perl-5.42/main amd64 liblocale-gettext-perl amd64 1.07-8+b1 [15.2 kB]
Get:2 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B]
Get:3 file:/srv/reprepro perl-5.42/main amd64 libtext-charwidth-perl amd64 0.04-11+b6 [9548 B]
Get:4 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.8.0-1 [116 kB]
Get:5 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB]
Get:6 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB]
Get:7 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.9-3+b1 [25.4 kB]
Get:8 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB]
Get:9 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB]
Get:10 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026b-1 [260 kB]
Get:11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB]
Get:12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.12-1 [776 kB]
Get:13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.9-3+b1 [8348 B]
Get:14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.9-3+b1 [25.4 kB]
Get:15 http://deb.debian.org/debian unstable/main amd64 isa-support amd64 27+b1 [15.5 kB]
Get:16 http://deb.debian.org/debian unstable/main amd64 sse4.2-support amd64 27+b1 [3692 B]
Get:17 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9+b2 [63.8 kB]
Get:18 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9+b2 [880 kB]
Get:19 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB]
Get:20 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.6.2-1 [1517 kB]
Get:21 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20260223 [158 kB]
Get:22 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b2 [337 kB]
Get:23 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b2 [109 kB]
Get:24 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5+b2 [42.6 kB]
Get:25 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-2 [242 kB]
Get:26 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB]
Get:27 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB]
Get:28 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42-5 [99.4 kB]
Get:29 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB]
Get:30 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB]
Get:31 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:32 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0053 [41.9 kB]
Get:33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB]
Get:34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-6 [494 kB]
Get:35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB]
Get:36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB]
Get:37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-2 [770 kB]
Get:38 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.31 [75.7 kB]
Get:39 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-11 [539 kB]
Get:40 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB]
Get:41 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:42 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB]
Get:43 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B]
Get:44 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.195-1 [58.1 kB]
Get:45 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB]
Get:46 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.2+dfsg-0.1 [641 kB]
Get:47 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-2 [1684 kB]
Get:48 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:49 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB]
Get:50 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.31 [932 kB]
Get:51 http://deb.debian.org/debian unstable/main amd64 diamond-aligner amd64 2.1.14-1 [2768 kB]
Get:52 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB]
Get:53 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB]
Get:54 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.14.3+dfsg-1 [493 kB]
Get:55 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:56 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:57 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB]
Get:58 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB]
Get:59 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.17.1-5 [191 kB]
Get:60 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB]
Get:61 http://deb.debian.org/debian unstable/main amd64 libdivsufsort3 amd64 2.0.1-7+b1 [46.1 kB]
Get:62 http://deb.debian.org/debian unstable/main amd64 hmmer amd64 3.4+dfsg-3 [1079 kB]
Get:63 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7+b2 [206 kB]
Get:64 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB]
Get:65 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB]
Get:66 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB]
Get:67 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB]
Get:68 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.13-1 [346 kB]
Get:69 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB]
Get:70 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB]
Get:71 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB]
Get:72 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB]
Get:73 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB]
Get:74 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB]
Get:75 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB]
Get:76 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.15.0-1 [67.2 kB]
Get:77 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.22.1-1 [133 kB]
Get:78 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2+b1 [31.0 kB]
Get:79 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2+b1 [78.9 kB]
Get:80 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B]
Get:81 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2+b1 [336 kB]
Get:82 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2+b1 [137 kB]
Get:83 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.69.0-1 [89.0 kB]
Get:84 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.22.1-1 [23.3 kB]
Get:85 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.5-1 [59.9 kB]
Get:86 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-2 [244 kB]
Get:87 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.20.0-1 [409 kB]
Get:88 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.14-1+b1 [39.5 kB]
Get:89 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2+b2 [48.3 kB]
Get:90 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB]
Get:91 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16-20260425-1 [884 kB]
Get:92 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.88.0-1 [1536 kB]
Get:93 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-13 [75.9 kB]
Get:94 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB]
Get:95 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB]
Get:96 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB]
Get:97 http://deb.debian.org/debian unstable/main amd64 libicu78 amd64 78.3-1 [10.0 MB]
Get:98 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB]
Get:99 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB]
Get:100 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7+b2 [2546 kB]
Get:101 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.1.0+ds-1 [199 kB]
Get:102 http://deb.debian.org/debian unstable/main amd64 liblmdb0 amd64 0.9.31-1+b3 [46.1 kB]
Get:103 http://deb.debian.org/debian unstable/main amd64 libmbedcrypto16 amd64 3.6.5-0.1+b1 [362 kB]
Get:104 http://deb.debian.org/debian unstable/main amd64 libmbedx509-7 amd64 3.6.5-0.1+b1 [151 kB]
Get:105 http://deb.debian.org/debian unstable/main amd64 libmbedtls21 amd64 3.6.5-0.1+b1 [245 kB]
Err:105 http://deb.debian.org/debian unstable/main amd64 libmbedtls21 amd64 3.6.5-0.1+b1
  File has unexpected size (45252 != 244828). Mirror sync in progress? [IP: 127.0.0.1 3142]
  Hashes of expected file:
   - SHA256:3824908f56004f4cc820ea24b16ff30259c5dfb6e62fd65202dbb69c587fea20
   - MD5Sum:4518e843affe62c268e935aae4188856 [weak]
   - Filesize:244828 [weak]
Get:106 http://deb.debian.org/debian unstable/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB]
Get:107 http://deb.debian.org/debian unstable/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2+b1 [1180 kB]
Get:108 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.30-1 [172 kB]
Get:109 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.30-1+b1 [52.1 kB]
Get:110 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.57.1-2 [224 kB]
Get:111 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.57.1-2 [52.8 kB]
Get:112 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.57.1-2 [33.8 kB]
Get:113 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b3 [16.7 kB]
Get:114 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b3 [16.5 kB]
Get:115 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b2 [115 kB]
Get:116 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB]
Get:117 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1+b2 [1053 kB]
Get:118 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1+b2 [335 kB]
Get:119 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-2 [357 kB]
Get:120 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB]
Get:121 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB]
Get:122 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB]
Get:123 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB]
Get:124 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.17-1+b2 [800 kB]
Get:125 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.34-2 [111 kB]
Get:126 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2+b2 [155 kB]
Get:127 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB]
Get:128 http://deb.debian.org/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg2-7 [3540 kB]
Get:129 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+ amd64 2.17.0+ds-7 [17.0 MB]
Get:130 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-15 [235 kB]
Get:131 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB]
Get:132 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get:133 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.6.0-2 [29.7 MB]
Get:134 http://deb.debian.org/debian unstable/main amd64 r-cran-cli amd64 3.6.6-1 [1391 kB]
Get:135 http://deb.debian.org/debian unstable/main amd64 r-cran-cpp11 all 0.5.4-2 [234 kB]
Get:136 http://deb.debian.org/debian unstable/main amd64 r-cran-farver amd64 2.1.2-3 [1414 kB]
Get:137 http://deb.debian.org/debian unstable/main amd64 r-cran-glue amd64 1.8.1-1 [172 kB]
Get:138 http://deb.debian.org/debian unstable/main amd64 r-cran-rlang amd64 1.2.0-3 [1734 kB]
Get:139 http://deb.debian.org/debian unstable/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
Get:140 http://deb.debian.org/debian unstable/main amd64 r-cran-gtable all 0.3.6+dfsg-2 [228 kB]
Get:141 http://deb.debian.org/debian unstable/main amd64 r-cran-isoband amd64 0.3.0-1 [1644 kB]
Get:142 http://deb.debian.org/debian unstable/main amd64 r-cran-s7 amd64 0.2.2-1 [331 kB]
Get:143 http://deb.debian.org/debian unstable/main amd64 r-cran-labeling all 0.4.3-2 [63.2 kB]
Get:144 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.6.1-2 [106 kB]
Get:145 http://deb.debian.org/debian unstable/main amd64 r-cran-rcolorbrewer all 1.1-3-2 [54.0 kB]
Get:146 http://deb.debian.org/debian unstable/main amd64 r-cran-viridislite all 0.4.3-1 [1299 kB]
Get:147 http://deb.debian.org/debian unstable/main amd64 r-cran-scales all 1.4.0-1 [800 kB]
Get:148 http://deb.debian.org/debian unstable/main amd64 r-cran-vctrs amd64 0.7.3-1 [1983 kB]
Get:149 http://deb.debian.org/debian unstable/main amd64 r-cran-withr all 3.0.2+dfsg-2 [226 kB]
Get:150 http://deb.debian.org/debian unstable/main amd64 r-cran-ggplot2 all 4.0.3+dfsg-1 [4923 kB]
Fetched 121 MB in 1s (108 MB/s)
E: Failed to fetch http://deb.debian.org/debian/pool/main/m/mbedtls/libmbedtls21_3.6.5-0.1%2bb1_amd64.deb  File has unexpected size (45252 != 244828). Mirror sync in progress? [IP: 127.0.0.1 3142]
   Hashes of expected file:
    - SHA256:3824908f56004f4cc820ea24b16ff30259c5dfb6e62fd65202dbb69c587fea20
    - MD5Sum:4518e843affe62c268e935aae4188856 [weak]
    - Filesize:244828 [weak]
E: Unable to fetch some archives, maybe run apt update or try with --fix-missing?
apt-get failed.
E: Package installation failed
Not removing build depends: cloned chroot in use

Setup apt archive
-----------------

Merged Build-Depends: dose-distcheck
Filtered Build-Depends: dose-distcheck
dpkg-deb: building package 'sbuild-build-depends-dose3-dummy' in '/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive/sbuild-build-depends-dose3-dummy.deb'.
Ign:1 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ InRelease
Get:2 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ Release [615 B]
Ign:3 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ Release.gpg
Get:4 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ Sources [1323 B]
Get:5 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ Packages [1343 B]
Fetched 3281 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install dose3 build dependencies (apt-based resolver)
-----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Solving dependencies...
The following additional packages will be installed:
  dose-distcheck
The following NEW packages will be installed:
  dose-distcheck sbuild-build-depends-dose3-dummy
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 1265 kB of archives.
After this operation, 5135 kB of additional disk space will be used.
Get:1 copy:/build/transdecoder-CDkwEf/resolver-QvWEzY/apt_archive ./ sbuild-build-depends-dose3-dummy 0.invalid.0 [836 B]
Get:2 http://deb.debian.org/debian unstable/main amd64 dose-distcheck amd64 7.0.0-7 [1264 kB]
Fetched 1265 kB in 0s (52.5 MB/s)
Selecting previously unselected package dose-distcheck.
(Reading database ... 23454 files and directories currently installed.)
Preparing to unpack .../dose-distcheck_7.0.0-7_amd64.deb ...
Unpacking dose-distcheck (7.0.0-7) ...
Selecting previously unselected package sbuild-build-depends-dose3-dummy.
Preparing to unpack .../sbuild-build-depends-dose3-dummy_0.invalid.0_amd64.deb ...
Unpacking sbuild-build-depends-dose3-dummy (0.invalid.0) ...
Setting up dose-distcheck (7.0.0-7) ...
Setting up sbuild-build-depends-dose3-dummy (0.invalid.0) ...
(I)Doseparse: Parsing and normalizing...
(I)Dose_deb: Parsing Packages file -...
(I)Dose_common: total packages 76823
(I)Dose_applications: Cudf Universe: 76823 packages
(I)Dose_applications: --checkonly specified, consider all packages as background packages
(I)Dose_applications: Solving...
output-version: 1.2
native-architecture: amd64
report:
 -
  package: sbuild-build-depends-main-dummy
  version: 0.invalid.0
  architecture: amd64
  status: ok
  installationset:
   -
    package: zlib1g
    version: 1:1.3.dfsg+really1.3.2-3
    architecture: amd64
   -
    package: zip
    version: 3.0-15
    architecture: amd64
   -
    package: xz-utils
    version: 5.8.3-1
    architecture: amd64
   -
    package: xdg-utils
    version: 1.2.1-2
    architecture: all
   -
    package: x11-common
    version: 1:7.7+26
    architecture: all
   -
    package: util-linux
    version: 2.42-5
    architecture: amd64
    essential: true
   -
    package: unzip
    version: 6.0-29
    architecture: amd64
   -
    package: ucf
    version: 3.0053
    architecture: all
   -
    package: tzdata
    version: 2026b-1
    architecture: all
   -
    package: tar
    version: 1.35+dfsg-4
    architecture: amd64
    essential: true
   -
    package: sysvinit-utils
    version: 3.18-1
    architecture: amd64
    essential: true
   -
    package: sse4.2-support
    version: 27+b1
    architecture: amd64
   -
    package: sensible-utils
    version: 0.0.26
    architecture: all
   -
    package: sed
    version: 4.9-3
    architecture: amd64
    essential: true
   -
    package: sbuild-build-depends-main-dummy
    version: 0.invalid.0
    architecture: amd64
   -
    package: rpcsvc-proto
    version: 1.4.3-1
    architecture: amd64
   -
    package: readline-common
    version: 8.3-4
    architecture: all
   -
    package: r-cran-withr
    version: 3.0.2+dfsg-2
    architecture: all
   -
    package: r-cran-viridislite
    version: 0.4.3-1
    architecture: all
   -
    package: r-cran-vctrs
    version: 0.7.3-1
    architecture: amd64
   -
    package: r-cran-scales
    version: 1.4.0-1
    architecture: all
   -
    package: r-cran-s7
    version: 0.2.2-1
    architecture: amd64
   -
    package: r-cran-rlang
    version: 1.2.0-3
    architecture: amd64
   -
    package: r-cran-rcolorbrewer
    version: 1.1-3-2
    architecture: all
   -
    package: r-cran-r6
    version: 2.6.1-2
    architecture: all
   -
    package: r-cran-lifecycle
    version: 1.0.5+dfsg-1
    architecture: all
   -
    package: r-cran-labeling
    version: 0.4.3-2
    architecture: all
   -
    package: r-cran-isoband
    version: 0.3.0-1
    architecture: amd64
   -
    package: r-cran-gtable
    version: 0.3.6+dfsg-2
    architecture: all
   -
    package: r-cran-glue
    version: 1.8.1-1
    architecture: amd64
   -
    package: r-cran-ggplot2
    version: 4.0.3+dfsg-1
    architecture: all
   -
    package: r-cran-farver
    version: 2.1.2-3
    architecture: amd64
   -
    package: r-cran-cpp11
    version: 0.5.4-2
    architecture: all
   -
    package: r-cran-cli
    version: 3.6.6-1
    architecture: amd64
   -
    package: r-base-core
    version: 4.6.0-2
    architecture: amd64
   -
    package: python3.13-minimal
    version: 3.13.12-1
    architecture: amd64
   -
    package: python3.13
    version: 3.13.12-1
    architecture: amd64
   -
    package: python3-minimal
    version: 3.13.9-3+b1
    architecture: amd64
   -
    package: python3
    version: 3.13.9-3+b1
    architecture: amd64
   -
    package: procps
    version: 2:4.0.4-9+b2
    architecture: amd64
   -
    package: po-debconf
    version: 1.0.22
    architecture: all
   -
    package: perl-modules-5.42
    version: 5.42.2-1
    architecture: all
   -
    package: perl-base
    version: 5.42.2-1
    architecture: amd64
    essential: true
   -
    package: perl
    version: 5.42.2-1
    architecture: amd64
   -
    package: patch
    version: 2.8-2
    architecture: amd64
   -
    package: openssl-provider-legacy
    version: 3.6.2-1
    architecture: amd64
   -
    package: openssl
    version: 3.6.2-1
    architecture: amd64
   -
    package: netbase
    version: 6.5
    architecture: all
   -
    package: ncurses-bin
    version: 6.6+20251231-1+b1
    architecture: amd64
    essential: true
   -
    package: ncurses-base
    version: 6.6+20251231-1
    architecture: all
    essential: true
   -
    package: ncbi-vdb-data
    version: 3.2.1+dfsg-2
    architecture: all
   -
    package: ncbi-data
    version: 6.1.20170106+dfsg2-7
    architecture: all
   -
    package: ncbi-blast+
    version: 2.17.0+ds-7
    architecture: amd64
   -
    package: media-types
    version: 14.0.0
    architecture: all
   -
    package: man-db
    version: 2.13.1-1
    architecture: amd64
   -
    package: make-guile
    version: 4.4.1-3
    architecture: amd64
   -
    package: m4
    version: 1.4.21-1
    architecture: amd64
   -
    package: linux-libc-dev
    version: 7.0.3-1
    architecture: all
   -
    package: libzstd1
    version: 1.5.7+dfsg-3+b2
    architecture: amd64
   -
    package: libxt6t64
    version: 1:1.2.1-1.3+b2
    architecture: amd64
   -
    package: libxss1
    version: 1:1.2.3-1+b4
    architecture: amd64
   -
    package: libxrender1
    version: 1:0.9.12-1+b2
    architecture: amd64
   -
    package: libxml2-16
    version: 2.15.2+dfsg-0.1
    architecture: amd64
   -
    package: libxft2
    version: 2.3.6-1+b5
    architecture: amd64
   -
    package: libxext6
    version: 2:1.3.4-1+b4
    architecture: amd64
   -
    package: libxdmcp6
    version: 1:1.1.5-2+b1
    architecture: amd64
   -
    package: libxcb1
    version: 1.17.0-2+b2
    architecture: amd64
   -
    package: libxcb-shm0
    version: 1.17.0-2+b2
    architecture: amd64
   -
    package: libxcb-render0
    version: 1.17.0-2+b2
    architecture: amd64
   -
    package: libxau6
    version: 1:1.0.11-1+b2
    architecture: amd64
   -
    package: libx11-data
    version: 2:1.8.13-1
    architecture: all
   -
    package: libx11-6
    version: 2:1.8.13-1
    architecture: amd64
   -
    package: libwebp7
    version: 1.5.0-0.1+b2
    architecture: amd64
   -
    package: libuv1t64
    version: 1.51.0-2+b2
    architecture: amd64
   -
    package: libuuid1
    version: 2.42-5
    architecture: amd64
   -
    package: liburi-perl
    version: 5.34-2
    architecture: all
   -
    package: libunistring5
    version: 1.4.2-1
    architecture: amd64
   -
    package: libudev1
    version: 260.1-1
    architecture: amd64
   -
    package: libuchardet0
    version: 0.0.8-2+b2
    architecture: amd64
   -
    package: libubsan1
    version: 16-20260425-1
    architecture: amd64
   -
    package: libtsan2
    version: 16-20260425-1
    architecture: amd64
   -
    package: libtool
    version: 2.5.4-11
    architecture: all
   -
    package: libtk8.6
    version: 8.6.17-1+b2
    architecture: amd64
   -
    package: libtirpc3t64
    version: 1.3.7+ds-1
    architecture: amd64
   -
    package: libtirpc-common
    version: 1.3.7+ds-1
    architecture: all
   -
    package: libtinfo6
    version: 6.6+20251231-1+b1
    architecture: amd64
   -
    package: libtiff6
    version: 4.7.1-2
    architecture: amd64
   -
    package: libthai0
    version: 0.1.30-1+b1
    architecture: amd64
   -
    package: libthai-data
    version: 0.1.30-1
    architecture: all
   -
    package: libtext-wrapi18n-perl
    version: 0.06-10
    architecture: all
   -
    package: libtext-charwidth-perl
    version: 0.04-11+b6
    architecture: amd64
   -
    package: libtcl8.6
    version: 8.6.17+dfsg-1+b2
    architecture: amd64
   -
    package: libsystemd0
    version: 260.1-1
    architecture: amd64
   -
    package: libstdc++6
    version: 16-20260425-1
    architecture: amd64
   -
    package: libstdc++-15-dev
    version: 15.2.0-17
    architecture: amd64
   -
    package: libssl3t64
    version: 3.6.2-1
    architecture: amd64
   -
    package: libssh2-1t64
    version: 1.11.1-2
    architecture: amd64
   -
    package: libsqlite3-0
    version: 3.46.1-9+b1
    architecture: amd64
   -
    package: libsmartcols1
    version: 2.42-5
    architecture: amd64
   -
    package: libsm6
    version: 2:1.2.6-1+b2
    architecture: amd64
   -
    package: libsharpyuv0
    version: 1.5.0-0.1+b2
    architecture: amd64
   -
    package: libsframe3
    version: 2.46-3
    architecture: amd64
   -
    package: libselinux1
    version: 3.10-1
    architecture: amd64
   -
    package: libseccomp2
    version: 2.6.0-2+b1
    architecture: amd64
   -
    package: libsasl2-modules-db
    version: 2.1.28+dfsg1-11
    architecture: amd64
   -
    package: libsasl2-2
    version: 2.1.28+dfsg1-11
    architecture: amd64
   -
    package: libreadline8t64
    version: 8.3-4
    architecture: amd64
   -
    package: libquadmath0
    version: 16-20260425-1
    architecture: amd64
   -
    package: libpython3.13-stdlib
    version: 3.13.12-1
    architecture: amd64
   -
    package: libpython3.13-minimal
    version: 3.13.12-1
    architecture: amd64
   -
    package: libpython3-stdlib
    version: 3.13.9-3+b1
    architecture: amd64
   -
    package: libpsl5t64
    version: 0.21.5-1
    architecture: amd64
   -
    package: libproc2-0
    version: 2:4.0.4-9+b2
    architecture: amd64
   -
    package: libpng16-16t64
    version: 1.6.58-1
    architecture: amd64
   -
    package: libpixman-1-0
    version: 0.46.4-1+b2
    architecture: amd64
   -
    package: libpipeline1
    version: 1.5.8-3
    architecture: amd64
   -
    package: libperl5.42
    version: 5.42.2-1
    architecture: amd64
   -
    package: libpcre2-8-0
    version: 10.46-1+b2
    architecture: amd64
   -
    package: libpaper2
    version: 2.2.5-0.3+b3
    architecture: amd64
   -
    package: libpaper-utils
    version: 2.2.5-0.3+b3
    architecture: amd64
   -
    package: libpangoft2-1.0-0
    version: 1.57.1-2
    architecture: amd64
   -
    package: libpangocairo-1.0-0
    version: 1.57.1-2
    architecture: amd64
   -
    package: libpango-1.0-0
    version: 1.57.1-2
    architecture: amd64
   -
    package: libpam0g
    version: 1.7.0-5+b2
    architecture: amd64
   -
    package: libpam-runtime
    version: 1.7.0-5
    architecture: all
   -
    package: libpam-modules-bin
    version: 1.7.0-5+b2
    architecture: amd64
   -
    package: libpam-modules
    version: 1.7.0-5+b2
    architecture: amd64
   -
    package: libopenblas0-openmp
    version: 0.3.32+ds-5
    architecture: amd64
   -
    package: libngtcp2-crypto-ossl0
    version: 1.22.1-1
    architecture: amd64
   -
    package: libngtcp2-16
    version: 1.22.1-1
    architecture: amd64
   -
    package: libnghttp3-9
    version: 1.15.0-1
    architecture: amd64
   -
    package: libnghttp2-14
    version: 1.69.0-1
    architecture: amd64
   -
    package: libncursesw6
    version: 6.6+20251231-1+b1
    architecture: amd64
   -
    package: libncbi-vdb3
    version: 3.2.1+dfsg-2+b1
    architecture: amd64
   -
    package: libmpfr6
    version: 4.2.2-3
    architecture: amd64
   -
    package: libmpc3
    version: 1.3.1-3
    architecture: amd64
   -
    package: libmount1
    version: 2.42-5
    architecture: amd64
   -
    package: libmd0
    version: 1.1.0-2+b2
    architecture: amd64
   -
    package: libmbedx509-7
    version: 3.6.5-0.1+b1
    architecture: amd64
   -
    package: libmbedtls21
    version: 3.6.5-0.1+b1
    architecture: amd64
   -
    package: libmbedcrypto16
    version: 3.6.5-0.1+b1
    architecture: amd64
   -
    package: libmagic1t64
    version: 1:5.46-5+b2
    architecture: amd64
   -
    package: libmagic-mgc
    version: 1:5.46-5+b2
    architecture: amd64
   -
    package: liblzma5
    version: 5.8.3-1
    architecture: amd64
   -
    package: liblsan0
    version: 16-20260425-1
    architecture: amd64
   -
    package: liblocale-gettext-perl
    version: 1.07-8+b1
    architecture: amd64
   -
    package: liblmdb0
    version: 0.9.31-1+b3
    architecture: amd64
   -
    package: liblerc4
    version: 4.1.0+ds-1
    architecture: amd64
   -
    package: libldap2
    version: 2.6.10+dfsg-1+b2
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+------------------------------------------------------------------------------+
| Cleanup                                      Mon, 04 May 2026 16:01:57 +0000 |
+------------------------------------------------------------------------------+

Purging /build/transdecoder-CDkwEf
Not cleaning session: cloned chroot in use
E: Package build dependencies not satisfied; skipping

+------------------------------------------------------------------------------+
| Summary                                      Mon, 04 May 2026 16:01:58 +0000 |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: full
Build-Space: n/a
Build-Time: 0
Distribution: perl-5.42-throwaway
Fail-Stage: install-deps
Host Architecture: amd64
Install-Time: 0
Job: /srv/debomatic/incoming/transdecoder_6.0.0-2.dsc
Machine Architecture: amd64
Package: transdecoder
Package-Time: 0
Source-Version: 6.0.0-2
Space: n/a
Status: given-back
Version: 6.0.0-2
--------------------------------------------------------------------------------
Finished at 2026-05-04T16:01:41Z
Build needed 00:00:00, no disk space