sbuild (Debian sbuild) 0.91.5 (17 December 2025) on carme.larted.org.uk +==============================================================================+ | reprof 1.0.1-10 (amd64) Sat, 28 Feb 2026 17:01:29 +0000 | +==============================================================================+ Package: reprof Version: 1.0.1-10 Source Version: 1.0.1-10 Distribution: perl-5.42-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sat, 28 Feb 2026 17:01:30 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup reprof_1.0.1-10 perl-5.42-throwaway amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup reprof_1.0.1-10 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sat, 28 Feb 2026 17:01:30 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Hit:3 http://deb.debian.org/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sat, 28 Feb 2026 17:01:31 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/reprof_1.0.1-10.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 28 Feb 2026 17:01:32 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libmodule-build-perl, build-essential Filtered Build-Depends: debhelper-compat (= 13), libmodule-build-perl, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reprof-okq0zg/resolver-5CwZSU/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reprof-okq0zg/resolver-5CwZSU/apt_archive ./ InRelease Get:2 copy:/build/reprof-okq0zg/resolver-5CwZSU/apt_archive ./ Release [609 B] Ign:3 copy:/build/reprof-okq0zg/resolver-5CwZSU/apt_archive ./ Release.gpg Get:4 copy:/build/reprof-okq0zg/resolver-5CwZSU/apt_archive ./ Sources [622 B] Get:5 copy:/build/reprof-okq0zg/resolver-5CwZSU/apt_archive ./ Packages [661 B] Fetched 1892 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libmodule-build-perl libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libmodule-build-perl libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After this operation, 41.1 MB of additional disk space will be used. Get:1 copy:/build/reprof-okq0zg/resolver-5CwZSU/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [868 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b1 [338 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b1 [110 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5+b1 [43.8 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.3-4 [98.9 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-5 [494 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.31 [75.7 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-9 [540 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.31 [932 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libmodule-build-perl all 0.423400-3 [234 kB] Preconfiguring packages ... Fetched 11.0 MB in 0s (130 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 23425 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5+b1_amd64.deb ... Unpacking file (1:5.46-5+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.2-1_amd64.deb ... Unpacking gettext-base (0.23.2-1) ... Selecting previously unselected package libuchardet0:amd64. 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Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.23.2-1_amd64.deb ... Unpacking gettext (0.23.2-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.22_all.deb ... Unpacking po-debconf (1.0.22) ... Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_13.31_all.deb ... Unpacking debhelper (13.31) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../28-libmodule-build-perl_0.423400-3_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../29-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-2) ... Setting up bsdextrautils (2.41.3-4) ... Setting up libmagic-mgc (1:5.46-5+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-2+b1) ... Setting up libdebhelper-perl (13.31) ... Setting up libmagic1t64:amd64 (1:5.46-5+b1) ... Setting up gettext-base (0.23.2-1) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.46-5+b1) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up libmodule-build-perl (0.423400-3) ... Setting up autotools-dev (20240727.1) ... Setting up autopoint (0.23.2-1) ... Setting up autoconf (2.72-5) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b1) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.2-1) ... Setting up libtool (2.5.4-9) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (22) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-10) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.31) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-13) ... +------------------------------------------------------------------------------+ | Check architectures Sat, 28 Feb 2026 17:01:36 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Sat, 28 Feb 2026 17:01:36 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.18.5+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.18.5-1 (2026-01-16) amd64 (x86_64) Toolchain package versions: binutils_2.46-2 dpkg-dev_1.23.5 g++-14_14.3.0-12 g++-15_15.2.0-14 gcc-14_14.3.0-12 gcc-15_15.2.0-14 libc6-dev_2.42-13 libstdc++-14-dev_14.3.0-12 libstdc++-15-dev_15.2.0-14 libstdc++6_15.2.0-14 linux-libc-dev_6.18.15-1 Package versions: adduser_3.154 apt_3.1.16 autoconf_2.72-5 automake_1:1.18.1-4 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-2 binutils_2.46-2 binutils-common_2.46-2 binutils-gold_2.44-3 binutils-gold-x86-64-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.46-2 bsdextrautils_2.41.3-4 bsdutils_1:2.41.3-4 build-essential_12.12 bzip2_1.0.8-6+b1 coreutils_9.10-1 cpp_4:15.2.0-5 cpp-14_14.3.0-12 cpp-14-x86-64-linux-gnu_14.3.0-12 cpp-15_15.2.0-14 cpp-15-x86-64-linux-gnu_15.2.0-14 cpp-x86-64-linux-gnu_4:15.2.0-5 dash_0.5.12-12 debconf_1.5.92 debhelper_13.31 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dirmngr_2.4.8-5 dpkg_1.23.5 dpkg-dev_1.23.5 dwz_0.16-2 eatmydata_131-2 file_1:5.46-5+b1 findutils_4.10.0-3 g++_4:15.2.0-5 g++-14_14.3.0-12 g++-14-x86-64-linux-gnu_14.3.0-12 g++-15_15.2.0-14 g++-15-x86-64-linux-gnu_15.2.0-14 g++-x86-64-linux-gnu_4:15.2.0-5 gcc_4:15.2.0-5 gcc-14_14.3.0-12 gcc-14-base_14.3.0-12 gcc-14-x86-64-linux-gnu_14.3.0-12 gcc-15_15.2.0-14 gcc-15-base_15.2.0-14 gcc-15-x86-64-linux-gnu_15.2.0-14 gcc-x86-64-linux-gnu_4:15.2.0-5 gettext_0.23.2-1 gettext-base_0.23.2-1 gnupg_2.4.8-5 gnupg-l10n_2.4.8-5 gpg_2.4.8-5 gpg-agent_2.4.8-5 gpgconf_2.4.8-5 gpgsm_2.4.8-5 grep_3.12-1 groff-base_1.23.0-10 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libapt-pkg7.0_3.1.16 libarchive-zip-perl_1.68-1 libasan8_15.2.0-14 libassuan9_3.0.2-2+b1 libatomic1_15.2.0-14 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-2 libblkid1_2.41.3-4 libbsd0_0.12.2-2+b1 libbz2-1.0_1.0.8-6+b1 libc-bin_2.42-13 libc-dev-bin_2.42-13 libc-gconv-modules-extra_2.42-13 libc-l10n_2.42-13 libc6_2.42-13 libc6-dev_2.42-13 libcap-ng0_0.9.1-1 libcap2_1:2.75-10+b5 libcc1-0_15.2.0-14 libcrypt-dev_1:4.5.1-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.46-2 libctf0_2.46-2 libdb5.3t64_5.3.28+dfsg2-11 libdebconfclient0_0.282+b2 libdebhelper-perl_13.31 libdpkg-perl_1.23.5 libeatmydata1_131-2+b2 libelf1t64_0.194-1 libffi8_3.5.2-3+b1 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-14-dev_14.3.0-12 libgcc-15-dev_15.2.0-14 libgcc-s1_15.2.0-14 libgcrypt20_1.11.2-3+b1 libgdbm-compat4t64_1.26-1+b1 libgdbm6t64_1.26-1+b1 libgmp10_2:6.3.0+dfsg-5+b1 libgnutls30t64_3.8.12-3 libgomp1_15.2.0-14 libgpg-error0_1.59-4 libgprofng0_2.46-2 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-14 libidn2-0_2.3.8-4+b1 libisl23_0.27-1+b1 libitm1_15.2.0-14 libjansson4_2.14-2+b4 libksba8_1.6.7-2+b2 liblastlog2-2_2.41.3-4 libldap2_2.6.10+dfsg-1+b2 liblsan0_15.2.0-14 liblz4-1_1.10.0-8 liblzma5_5.8.2-2 libmagic-mgc_1:5.46-5+b1 libmagic1t64_1:5.46-5+b1 libmd0_1.1.0-2+b2 libmodule-build-perl_0.423400-3 libmount1_2.41.3-4 libmpc3_1.3.1-2+b1 libmpfr6_4.2.2-2+b1 libncursesw6_6.6+20251231-1 libnettle8t64_3.10.2-1 libnpth0t64_1.8-3+b1 libp11-kit0_0.26.2-2 libpam-modules_1.7.0-5+b1 libpam-modules-bin_1.7.0-5+b1 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5+b1 libpcre2-8-0_10.46-1+b1 libperl5.40_5.40.1-7 libperl5.42_5.42.0-3 libpipeline1_1.5.8-2 libquadmath0_15.2.0-14 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2+b1 libselinux1_3.9-4+b1 libsemanage-common_3.9-1 libsemanage2_3.9-1+b1 libsepol2_3.9-2 libsframe2_2.45.50.20251209-1+b1 libsframe3_2.46-2 libsmartcols1_2.41.3-4 libsqlite3-0_3.46.1-9 libssl3t64_3.5.5-1 libstdc++-14-dev_14.3.0-12 libstdc++-15-dev_15.2.0-14 libstdc++6_15.2.0-14 libsystemd0_260~rc1-2 libtasn1-6_4.21.0-2 libtinfo6_6.6+20251231-1 libtool_2.5.4-9 libtsan2_15.2.0-14 libubsan1_15.2.0-14 libuchardet0_0.0.8-2+b1 libudev1_260~rc1-2 libunistring5_1.3-2+b1 libuuid1_2.41.3-4 libxml2-16_2.15.1+dfsg-2+b1 libxxhash0_0.8.3-2+b1 libzstd1_1.5.7+dfsg-3+b1 linux-libc-dev_6.18.15-1 locales-all_2.42-13 login.defs_1:4.19.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260129-1 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 openssl-provider-legacy_3.5.5-1 passwd_1:4.19.3-1 patch_2.8-2 perl_5.42.0-3 perl-base_5.42.0-3 perl-modules-5.40_5.40.1-7 perl-modules-5.42_5.42.0-3 pinentry-curses_1.3.2-3 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-5 sysvinit-utils_3.15-6 tar_1.35+dfsg-4 util-linux_2.41.3-4 xz-utils_5.8.2-2 zlib1g_1:1.3.dfsg+really1.3.1-3 +------------------------------------------------------------------------------+ | Build Sat, 28 Feb 2026 17:01:36 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: reprof Binary: reprof, librg-reprof-bundle-perl Architecture: all Version: 1.0.1-10 Maintainer: Debian Med Packaging Team Uploaders: Peter Hoenigschmid , Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/med-team/reprof Vcs-Git: https://salsa.debian.org/med-team/reprof.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, libai-fann-perl, pkg-perl-autopkgtest, pkg-perl-autopkgtest-heavy Build-Depends: debhelper-compat (= 13), libmodule-build-perl Package-List: librg-reprof-bundle-perl deb perl optional arch=all reprof deb science optional arch=all Checksums-Sha1: 7f85dbf7cba54eefde3189cce1eee150910f3c6c 9041799 reprof_1.0.1.orig.tar.gz 9b331c9666dbd0fac963ce239db2d075ae64ac3b 5840 reprof_1.0.1-10.debian.tar.xz Checksums-Sha256: a6ad4a0595e6a152612c9bcd6ab86f9f4c7a649c5aaed7e06bde611e2e9346c2 9041799 reprof_1.0.1.orig.tar.gz 1ac1a72aef1dc160b538b168eb4a3b0208b80d80dfb6a215ecfc7316107b82bb 5840 reprof_1.0.1-10.debian.tar.xz Files: 77e6f917af1667e93f5bae7c23f78d54 9041799 reprof_1.0.1.orig.tar.gz 5c051d759f8e364cc4a079cdeafe3db7 5840 reprof_1.0.1-10.debian.tar.xz Dgit: a8a405877d32b8aea3a2e16584e7e5325ee2a18b debian archive/debian/1.0.1-10 https://git.dgit.debian.org/reprof -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmmi6wIUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp/Sw/8DrmSVwdfAkq/poXNr4L+ZFuCq6He 7Byw+vlHsD++kBEhc7+TgagSCo/P/+xwQp9I4pqdgifAcKzEXNbrgfBfMRatM497 1zmPp2td5d/D4sIf0J6xO24O78JPk3btH6UqZFEUs7+mBSMGq3Fb/AytGNJfQR0i QXHQ4u6W7YfDVt+eaim87BZvn7AhUetybkzacxoVDr+2pJLEsTzgdnbDd40SAXfR YUAJC1Myd8ao+y5cXIEAwVNC0o+zutjXCk77wJeNJSw2xrtSr6RE/W7LOyxPw0cg 3UwF/XO385kHRJzOKrbgQEcfEHJEDBI0607vYbDPnmdctFUVixWbR6t3aDTCRgGZ Qe30W1GNom3o8CeeC5Xfp5FbHDOTYqpbKIXReGfMzh7cOzQ+AboNv9oaoW2o1S8U CXJto52BgCl9rH5jm7+qykDFa/jhR2GRiC8tpfCTaMLBpOkqtuvjfEE/ABdiXWlT aC61LQhMUDBqTuMJOCHgaphwh3bN9zTu0tOhRfUetPEwHMyjOzYWO5CZoWXGk8+m sUcWC1msdgDU92RJtQfKac/qHHRwxzzqJvuJEb9wIhQEzLkYs4jWllS9VQUatkEl CAQSOx9J71wlMKW4bdFMVHdURa7S6BUh44BF+j4+b9TYoKjKyWrCzb1kXZsQCpSR f1Nk9Tmnl0yK248= =C8Px -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./reprof_1.0.1-10.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./reprof_1.0.1-10.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting reprof in /build/reprof-okq0zg/reprof-1.0.1 dpkg-source: info: unpacking reprof_1.0.1.orig.tar.gz dpkg-source: info: unpacking reprof_1.0.1-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_pp-popcon.patch dpkg-source: info: applying update-model-files.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sat, 28 Feb 2026 17:01:37 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network reprof_1.0.1-10 perl-5.42-throwaway amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network reprof_1.0.1-10 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/reprof-okq0zg/reprof-1.0.1 SCHROOT_ALIAS_NAME=perl-5.42-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-e736c0df-c6c6-444e-89ee-92b01602781b SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package reprof dpkg-buildpackage: info: source version 1.0.1-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_testdir debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' find . -name Makefile -delete # restore reprof.spec which is removed in the build process if [ ! -e reprof.spec ] \ ; then sed 's/@VERSION@/1.0.1/' reprof.spec.in \ > reprof.spec \ ; fi make[1]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' dh_auto_clean dh_autoreconf_clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/reprof.substvars debian/librg-reprof-bundle-perl.substvars debian/files rm -fr -- debian/reprof/ debian/tmp/ debian/librg-reprof-bundle-perl/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building reprof using existing ./reprof_1.0.1.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building reprof in reprof_1.0.1-10.debian.tar.xz dpkg-source: info: building reprof in reprof_1.0.1-10.dsc debian/rules binary dh binary dh_testdir dh_update_autotools_config dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i -v autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force autoreconf: configure.ac: tracing autoreconf: configure.ac: not using Libtool autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: running: /usr/bin/autoconf --force autoreconf: configure.ac: not using Autoheader autoreconf: running: automake --add-missing --copy --force-missing autoreconf: Leaving directory '.' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1002' is supported by ustar format... yes checking whether GID '110' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Build.PL config.status: creating examples/Makefile config.status: creating lib/Makefile config.status: creating lib/RG/Makefile config.status: creating lib/RG/Reprof/Makefile config.status: creating reprof.spec config.status: creating scripts/Makefile config.status: creating share/Makefile dh_auto_build make -j2 make[1]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' Making all in examples make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/examples' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/examples' Making all in scripts make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' sed -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "reprof" | \ pod2man -c 'User Commands' -r "1.0.1" -name REPROF > "reprof.1" make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' Making all in lib make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib' Making all in RG make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' Making all in Reprof make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib' Making all in share make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' perl Build.PL installdirs=vendor && perl Build && touch build-stamp Can't find dist packages without a MANIFEST file Run 'Build manifest' to generate one WARNING: Possible missing or corrupt 'MANIFEST' file. Nothing to enter for 'provides' field in metafile. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'reprof' version '1.0.1' Building reprof make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' # Build process somehow removes lib/RG/Reprof.pm # make sure it exists to be able to build twice in a row if [ ! -e lib/RG/Reprof.pm ] ; then cp lib/RG/Reprof.pm.mk lib/RG/Reprof.pm ; fi make[1]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' dh_auto_test make -j2 check TESTSUITEFLAGS="-j2 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' Making check in examples make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/examples' Making check in scripts make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' Making check in lib make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib' Making check in RG make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' Making check in Reprof make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib' Making check in share make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' rm -fr -- /tmp/dh-xdg-rundir-0T2Ub5CO create-stamp debian/debhelper-build-stamp dh_testroot dh_prep rm -f -- debian/reprof.substvars debian/librg-reprof-bundle-perl.substvars rm -fr -- debian/.debhelper/generated/reprof/ debian/reprof/ debian/tmp/ debian/.debhelper/generated/librg-reprof-bundle-perl/ debian/librg-reprof-bundle-perl/ dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' # The following will run: perl Build install dh_auto_install install -m0755 -d /build/reprof-okq0zg/reprof-1.0.1/debian/tmp make -j2 install DESTDIR=/build/reprof-okq0zg/reprof-1.0.1/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' Making install in examples make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/examples' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/examples' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' /usr/bin/install -c -m 644 ./example.Q ./example.Q.reprof ./example.fasta ./example.fasta.reprof ./mutations.txt ./mutations_example.Q.reprof ./mutations_example.Q.reprof_F172P ./mutations_example.Q.reprof_M1Q ./mutations_example.Q.reprof_N34Y ./mutations_example.Q.reprof_ORI '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/examples' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/examples' Making install in scripts make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' /usr/bin/mkdir -p '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c reprof '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/bin' make install-exec-hook /usr/bin/install -c -m 644 reprof.1 '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/man/man1' make[5]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/bin/reprof" make install-data-hook make[5]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' make[5]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/man/man1/reprof.1" make[5]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' Making install in lib make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib' Making install in RG make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' Making install in Reprof make[5]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[6]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[5]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[6]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[5]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[5]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib' Making install in share make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/reprof' /usr/bin/install -c -m 644 ./a.model ./b.model ./bb.model ./bu.model ./fa.model ./fb.model ./fbb.model ./fbu.model ./fu.model ./fub.model ./fuu.model ./u.model ./ub.model ./uu.model ./a.features ./b.features ./bb.features ./bu.features ./fa.features ./fb.features ./fbb.features ./fbu.features ./fu.features ./fub.features ./fuu.features ./u.features ./ub.features ./uu.features '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/reprof' make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' make[4]: Nothing to be done for 'install-exec-am'. perl Build install destdir=/build/reprof-okq0zg/reprof-1.0.1/debian/tmp create_packlist=0 Building reprof Installing /build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof.pm Installing /build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/Converter.pm Installing /build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/blastPsiMat.pm Installing /build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/fasta.pm Installing /build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/man/man3/RG::Reprof.3pm make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' # But we also need this to get the correct script DESTDIR=/build/reprof-okq0zg/reprof-1.0.1/debian/tmp make install make[2]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' Making install in examples make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/examples' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/examples' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' /usr/bin/install -c -m 644 ./example.Q ./example.Q.reprof ./example.fasta ./example.fasta.reprof ./mutations.txt ./mutations_example.Q.reprof ./mutations_example.Q.reprof_F172P ./mutations_example.Q.reprof_M1Q ./mutations_example.Q.reprof_N34Y ./mutations_example.Q.reprof_ORI '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/examples' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/examples' Making install in scripts make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' /usr/bin/mkdir -p '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/bin' /usr/bin/install -c reprof '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/bin' make install-exec-hook make[5]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/bin/reprof" make[5]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' /usr/bin/mkdir -p '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 reprof.1 '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/man/man1' make install-data-hook make[5]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/man/man1/reprof.1" make[5]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/scripts' Making install in lib make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib' Making install in RG make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' Making install in Reprof make[5]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[6]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[5]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[6]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[5]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[5]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/lib' Making install in share make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/reprof' /usr/bin/install -c -m 644 ./a.model ./b.model ./bb.model ./bu.model ./fa.model ./fb.model ./fbb.model ./fbu.model ./fu.model ./fub.model ./fuu.model ./u.model ./ub.model ./uu.model ./a.features ./b.features ./bb.features ./bu.features ./fa.features ./fb.features ./fbb.features ./fbu.features ./fu.features ./fub.features ./fuu.features ./u.features ./ub.features ./uu.features '/build/reprof-okq0zg/reprof-1.0.1/debian/tmp/usr/share/reprof' make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' make[4]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' make[4]: Nothing to be done for 'install-exec-am'. perl Build install destdir=/build/reprof-okq0zg/reprof-1.0.1/debian/tmp create_packlist=0 Building reprof make[4]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' make[3]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' dh_install install -m0755 -d debian/reprof//usr cp --reflink=auto -a debian/tmp/usr/bin debian/reprof//usr/ install -m0755 -d debian/reprof//usr/share/doc/reprof cp --reflink=auto -a debian/tmp/usr/share/doc/reprof/examples debian/reprof//usr/share/doc/reprof/ install -m0755 -d debian/reprof//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/reprof//usr/share/man/ install -m0755 -d debian/librg-reprof-bundle-perl//usr/share cp --reflink=auto -a debian/tmp/usr/share/perl5 debian/tmp/usr/share/reprof debian/librg-reprof-bundle-perl//usr/share/ install -m0755 -d debian/librg-reprof-bundle-perl//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man3 debian/librg-reprof-bundle-perl//usr/share/man/ dh_installdocs install -m0755 -d debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/README.test debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/tests/installation-test debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/tests/test-models.t debian/reprof/usr/share/doc/reprof chmod -R u\+rw,go=rX debian/reprof/usr/share/doc install -p -m0644 debian/copyright debian/reprof/usr/share/doc/reprof/copyright install -m0755 -d debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl install -p -m0644 debian/copyright debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/copyright dh_installchangelogs install -m0755 -d debian/reprof/usr/share/doc/reprof install -p -m0644 debian/.debhelper/generated/reprof/dh_installchangelogs.dch.trimmed debian/reprof/usr/share/doc/reprof/changelog.Debian install -p -m0644 ./ChangeLog debian/reprof/usr/share/doc/reprof/changelog install -m0755 -d debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl install -p -m0644 debian/.debhelper/generated/librg-reprof-bundle-perl/dh_installchangelogs.dch.trimmed debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/changelog.Debian install -p -m0644 ./ChangeLog debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/changelog dh_installexamples dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/reprof/usr/share/man/man1/reprof.1 man-recode --to-code UTF-8 --suffix .dh-new debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm mv debian/reprof/usr/share/man/man1/reprof.1.dh-new debian/reprof/usr/share/man/man1/reprof.1 chmod 0644 -- debian/reprof/usr/share/man/man1/reprof.1 mv debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm.dh-new debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm chmod 0644 -- debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm dh_installcatalogs dh_installcron dh_installdebconf install -m0755 -d debian/reprof/DEBIAN install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installtmpfiles dh_installsystemd dh_installsystemduser dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installgsettings dh_installinitramfs dh_installalternatives dh_bugfiles dh_ucf dh_lintian dh_icons dh_perl mv debian/reprof.substvars.new debian/reprof.substvars mv debian/librg-reprof-bundle-perl.substvars.new debian/librg-reprof-bundle-perl.substvars rmdir --ignore-fail-on-non-empty --parents debian/librg-reprof-bundle-perl/usr/share/perl5 dh_usrlocal dh_link dh_installwm dh_installxfonts dh_strip_nondeterminism rm -f debian/librg-reprof-bundle-perl.debhelper.log debian/reprof.debhelper.log debian/rules override_dh_compress make[1]: Entering directory '/build/reprof-okq0zg/reprof-1.0.1' dh_compress -Xexample.Q cd debian/reprof cd debian/librg-reprof-bundle-perl chmod a-x usr/share/doc/reprof/changelog usr/share/doc/reprof/changelog.Debian usr/share/man/man1/reprof.1 chmod a-x usr/share/doc/librg-reprof-bundle-perl/changelog usr/share/doc/librg-reprof-bundle-perl/changelog.Debian usr/share/man/man3/RG::Reprof.3pm gzip -9nf usr/share/doc/reprof/changelog usr/share/doc/reprof/changelog.Debian usr/share/man/man1/reprof.1 gzip -9nf usr/share/doc/librg-reprof-bundle-perl/changelog usr/share/doc/librg-reprof-bundle-perl/changelog.Debian usr/share/man/man3/RG::Reprof.3pm cd '/build/reprof-okq0zg/reprof-1.0.1' cd '/build/reprof-okq0zg/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-okq0zg/reprof-1.0.1' dh_fixperms find debian/reprof ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librg-reprof-bundle-perl ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/reprof/usr/share/doc -type f -a -true -a ! -regex 'debian/reprof/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl/usr/share/doc -type f -a -true -a ! -regex 'debian/librg-reprof-bundle-perl/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/librg-reprof-bundle-perl/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/librg-reprof-bundle-perl/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl/usr/share/perl5 -type f -perm -5 -name '*.pm' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a-X find debian/reprof -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_installdeb install -m0755 -d debian/reprof/DEBIAN install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN dh_gencontrol install -m0755 -d debian/reprof/DEBIAN echo misc:Depends= >> debian/reprof.substvars echo misc:Pre-Depends= >> debian/reprof.substvars dpkg-gencontrol -preprof -ldebian/changelog -Tdebian/reprof.substvars -cdebian/control -Pdebian/reprof install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN echo misc:Depends= >> debian/librg-reprof-bundle-perl.substvars echo misc:Pre-Depends= >> debian/librg-reprof-bundle-perl.substvars dpkg-gencontrol -plibrg-reprof-bundle-perl -ldebian/changelog -Tdebian/librg-reprof-bundle-perl.substvars -cdebian/control -Pdebian/librg-reprof-bundle-perl chmod 0644 -- debian/reprof/DEBIAN/control chmod 0644 -- debian/librg-reprof-bundle-perl/DEBIAN/control dh_md5sums install -m0755 -d debian/reprof/DEBIAN install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN cd debian/reprof >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/librg-reprof-bundle-perl >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/reprof/DEBIAN/md5sums chmod 0644 -- debian/librg-reprof-bundle-perl/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/reprof .. dpkg-deb --root-owner-group --build debian/librg-reprof-bundle-perl .. dpkg-deb: building package 'reprof' in '../reprof_1.0.1-10_all.deb'. dpkg-deb: building package 'librg-reprof-bundle-perl' in '../librg-reprof-bundle-perl_1.0.1-10_all.deb'. dpkg-genbuildinfo -O../reprof_1.0.1-10_amd64.buildinfo dpkg-genchanges -O../reprof_1.0.1-10_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2026-02-28T17:02:09Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 28 Feb 2026 17:02:09 +0000 | +------------------------------------------------------------------------------+ reprof_1.0.1-10_amd64.changes: ------------------------------ Format: 1.8 Date: Sat, 28 Feb 2026 14:10:50 +0100 Source: reprof Binary: librg-reprof-bundle-perl reprof Architecture: source all Version: 1.0.1-10 Distribution: perl-5.42-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: librg-reprof-bundle-perl - protein secondary structure and accessibility predictor (perl mod reprof - protein secondary structure and accessibility predictor Closes: 1045897 Changes: reprof (1.0.1-10) unstable; urgency=medium . * Team upload. * d/rules: execute cleanup before dh_auto_clean. (Closes: #1045897) * d/control: drop redundant Priority: optional. * d/control: drop redundant Rules-Requires-Root: no. * d/control: declare compliance to standards version 4.7.3. * d/watch: convert to version 5 untrackable watch file. * no_pp-popcon.patch: normalize Last-Update timestamp. Checksums-Sha1: f5d64017b1bcfa2f4322baa52323cca575f3b985 1304 reprof_1.0.1-10.dsc a1e9f02bd09868ded5028f305f29221ff0938823 5840 reprof_1.0.1-10.debian.tar.xz e385011f5733029e0885dbe8c27bfe72894a4655 7480868 librg-reprof-bundle-perl_1.0.1-10_all.deb 25270a6e4491f1bbd1de69d9db2e7260239414cd 14452 reprof_1.0.1-10_all.deb 27878fcf3362ac0e9b9610fd75866f9677115170 5316 reprof_1.0.1-10_amd64.buildinfo Checksums-Sha256: 8abbd9d92679ae505c17b75b725ecfb50db83a0cfd492dd36f3fffb3b9d76031 1304 reprof_1.0.1-10.dsc be57029f95a0e14f7fdcc5bded799c1798b71a4e75f043f0fa3a46933770aef2 5840 reprof_1.0.1-10.debian.tar.xz c0301b24d3f35a770ae95adea7f14745bd399c22e66806e4e57fe0b753736cc6 7480868 librg-reprof-bundle-perl_1.0.1-10_all.deb 5a11e46955197cce9811bd77614ecb8dcb101c31cc9faff24613854b87006142 14452 reprof_1.0.1-10_all.deb 5c3593050b98c26d74bcc51b1455d0ffc85f2fd39f423d25b20f4494646c0222 5316 reprof_1.0.1-10_amd64.buildinfo Files: 0aefe369928a92d9651b592938235246 1304 science optional reprof_1.0.1-10.dsc 23740d801ecb6e57a49bdece7ad70ea4 5840 science optional reprof_1.0.1-10.debian.tar.xz 97821869344013ceddd72cea44c7f832 7480868 perl optional librg-reprof-bundle-perl_1.0.1-10_all.deb 9210b89a4984685f032e7d1e70fded25 14452 science optional reprof_1.0.1-10_all.deb f5e925fd969136e0d1ffe808145bd689 5316 science optional reprof_1.0.1-10_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Sat, 28 Feb 2026 17:02:09 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: reprof Binary: librg-reprof-bundle-perl reprof Architecture: all source Version: 1.0.1-10 Checksums-Md5: 0aefe369928a92d9651b592938235246 1304 reprof_1.0.1-10.dsc 97821869344013ceddd72cea44c7f832 7480868 librg-reprof-bundle-perl_1.0.1-10_all.deb 9210b89a4984685f032e7d1e70fded25 14452 reprof_1.0.1-10_all.deb Checksums-Sha1: f5d64017b1bcfa2f4322baa52323cca575f3b985 1304 reprof_1.0.1-10.dsc e385011f5733029e0885dbe8c27bfe72894a4655 7480868 librg-reprof-bundle-perl_1.0.1-10_all.deb 25270a6e4491f1bbd1de69d9db2e7260239414cd 14452 reprof_1.0.1-10_all.deb Checksums-Sha256: 8abbd9d92679ae505c17b75b725ecfb50db83a0cfd492dd36f3fffb3b9d76031 1304 reprof_1.0.1-10.dsc c0301b24d3f35a770ae95adea7f14745bd399c22e66806e4e57fe0b753736cc6 7480868 librg-reprof-bundle-perl_1.0.1-10_all.deb 5a11e46955197cce9811bd77614ecb8dcb101c31cc9faff24613854b87006142 14452 reprof_1.0.1-10_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 28 Feb 2026 17:02:09 +0000 Build-Path: /build/reprof-okq0zg/reprof-1.0.1 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-5), automake (= 1:1.18.1-4), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-2), binutils (= 2.46-2), binutils-common (= 2.46-2), binutils-x86-64-linux-gnu (= 2.46-2), bsdextrautils (= 2.41.3-4), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), coreutils (= 9.10-1), cpp (= 4:15.2.0-5), cpp-14 (= 14.3.0-12), cpp-14-x86-64-linux-gnu (= 14.3.0-12), cpp-15 (= 15.2.0-14), cpp-15-x86-64-linux-gnu (= 15.2.0-14), cpp-x86-64-linux-gnu (= 4:15.2.0-5), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 13.31), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.5), dpkg-dev (= 1.23.5), dwz (= 0.16-2), file (= 1:5.46-5+b1), findutils (= 4.10.0-3), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-14), g++-15-x86-64-linux-gnu (= 15.2.0-14), g++-x86-64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-14 (= 14.3.0-12), gcc-14-base (= 14.3.0-12), gcc-14-x86-64-linux-gnu (= 14.3.0-12), gcc-15 (= 15.2.0-14), gcc-15-base (= 15.2.0-14), gcc-15-x86-64-linux-gnu (= 15.2.0-14), gcc-x86-64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-14), libatomic1 (= 15.2.0-14), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-2), libblkid1 (= 2.41.3-4), libbz2-1.0 (= 1.0.8-6+b1), libc-bin (= 2.42-13), libc-dev-bin (= 2.42-13), libc-gconv-modules-extra (= 2.42-13), libc6 (= 2.42-13), libc6-dev (= 2.42-13), libcap-ng0 (= 0.9.1-1), libcc1-0 (= 15.2.0-14), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.46-2), libctf0 (= 2.46-2), libdb5.3t64 (= 5.3.28+dfsg2-11), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.31), libdpkg-perl (= 1.23.5), libelf1t64 (= 0.194-1), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-14-dev (= 14.3.0-12), libgcc-15-dev (= 15.2.0-14), libgcc-s1 (= 15.2.0-14), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgomp1 (= 15.2.0-14), libgprofng0 (= 2.46-2), libhwasan0 (= 15.2.0-14), libisl23 (= 0.27-1+b1), libitm1 (= 15.2.0-14), libjansson4 (= 2.14-2+b4), liblsan0 (= 15.2.0-14), liblzma5 (= 5.8.2-2), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmodule-build-perl (= 0.423400-3), libmount1 (= 2.41.3-4), libmpc3 (= 1.3.1-2+b1), libmpfr6 (= 4.2.2-2+b1), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpcre2-8-0 (= 10.46-1+b1), libperl5.42 (= 5.42.0-3), libpipeline1 (= 1.5.8-2), libquadmath0 (= 15.2.0-14), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libsframe3 (= 2.46-2), libsmartcols1 (= 2.41.3-4), libssl3t64 (= 3.5.5-1), libstdc++-15-dev (= 15.2.0-14), libstdc++6 (= 15.2.0-14), libsystemd0 (= 260~rc1-2), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-9), libtsan2 (= 15.2.0-14), libubsan1 (= 15.2.0-14), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 260~rc1-2), libunistring5 (= 1.3-2+b1), libuuid1 (= 2.41.3-4), libxml2-16 (= 2.15.1+dfsg-2+b1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.18.15-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260129-1), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), openssl-provider-legacy (= 3.5.5-1), patch (= 2.8-2), perl (= 5.42.0-3), perl-base (= 5.42.0-3), perl-modules-5.42 (= 5.42.0-3), po-debconf (= 1.0.22), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-6), tar (= 1.35+dfsg-4), util-linux (= 2.41.3-4), xz-utils (= 5.8.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1772284250" +------------------------------------------------------------------------------+ | Package contents Sat, 28 Feb 2026 17:02:09 +0000 | +------------------------------------------------------------------------------+ librg-reprof-bundle-perl_1.0.1-10_all.deb ----------------------------------------- new Debian package, version 2.0. size 7480868 bytes: control archive=1580 bytes. 727 bytes, 18 lines control 2337 bytes, 36 lines md5sums Package: librg-reprof-bundle-perl Source: reprof Version: 1.0.1-10 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 21253 Depends: perl:any, libai-fann-perl Section: perl Priority: optional Homepage: https://rostlab.org/ Description: protein secondary structure and accessibility predictor (perl module) 'reprof' is an improved implementation of 'prof', a popular protein secondary structure and accessibility predictor. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance. . This package provides the perl modules implementing 'reprof' along with the necessary data files. drwxr-xr-x root/root 0 2026-02-28 13:10 ./ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/doc/librg-reprof-bundle-perl/ -rw-r--r-- root/root 890 2026-02-28 13:10 ./usr/share/doc/librg-reprof-bundle-perl/changelog.Debian.gz -rw-r--r-- root/root 265 2012-01-13 15:41 ./usr/share/doc/librg-reprof-bundle-perl/changelog.gz -rw-r--r-- root/root 1357 2026-02-28 13:10 ./usr/share/doc/librg-reprof-bundle-perl/copyright drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/man/ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/man/man3/ -rw-r--r-- root/root 1826 2026-02-28 13:10 ./usr/share/man/man3/RG::Reprof.3pm.gz drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/perl5/ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/perl5/RG/ -rw-r--r-- root/root 18542 2026-02-28 13:10 ./usr/share/perl5/RG/Reprof.pm drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/perl5/RG/Reprof/ -rw-r--r-- root/root 5667 2026-02-28 13:10 ./usr/share/perl5/RG/Reprof/Converter.pm -rw-r--r-- root/root 1905 2026-02-28 13:10 ./usr/share/perl5/RG/Reprof/blastPsiMat.pm -rw-r--r-- root/root 6000 2026-02-28 13:10 ./usr/share/perl5/RG/Reprof/fasta.pm drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/reprof/ -rw-r--r-- root/root 459 2026-02-28 13:10 ./usr/share/reprof/a.features -rw-r--r-- root/root 1128778 2026-02-28 13:10 ./usr/share/reprof/a.model -rw-r--r-- root/root 454 2026-02-28 13:10 ./usr/share/reprof/b.features -rw-r--r-- root/root 1158427 2026-02-28 13:10 ./usr/share/reprof/b.model -rw-r--r-- root/root 523 2026-02-28 13:10 ./usr/share/reprof/bb.features -rw-r--r-- root/root 2646384 2026-02-28 13:10 ./usr/share/reprof/bb.model -rw-r--r-- root/root 523 2026-02-28 13:10 ./usr/share/reprof/bu.features -rw-r--r-- root/root 2571822 2026-02-28 13:10 ./usr/share/reprof/bu.model -rw-r--r-- root/root 402 2026-02-28 13:10 ./usr/share/reprof/fa.features -rw-r--r-- root/root 566486 2026-02-28 13:10 ./usr/share/reprof/fa.model -rw-r--r-- root/root 391 2026-02-28 13:10 ./usr/share/reprof/fb.features -rw-r--r-- root/root 969013 2026-02-28 13:10 ./usr/share/reprof/fb.model -rw-r--r-- root/root 461 2026-02-28 13:10 ./usr/share/reprof/fbb.features -rw-r--r-- root/root 1439947 2026-02-28 13:10 ./usr/share/reprof/fbb.model -rw-r--r-- root/root 461 2026-02-28 13:10 ./usr/share/reprof/fbu.features -rw-r--r-- root/root 866249 2026-02-28 13:10 ./usr/share/reprof/fbu.model -rw-r--r-- root/root 392 2026-02-28 13:10 ./usr/share/reprof/fu.features -rw-r--r-- root/root 1814340 2026-02-28 13:10 ./usr/share/reprof/fu.model -rw-r--r-- root/root 462 2026-02-28 13:10 ./usr/share/reprof/fub.features -rw-r--r-- root/root 424211 2026-02-28 13:10 ./usr/share/reprof/fub.model -rw-r--r-- root/root 462 2026-02-28 13:10 ./usr/share/reprof/fuu.features -rw-r--r-- root/root 1713895 2026-02-28 13:10 ./usr/share/reprof/fuu.model -rw-r--r-- root/root 454 2026-02-28 13:10 ./usr/share/reprof/u.features -rw-r--r-- root/root 1589338 2026-02-28 13:10 ./usr/share/reprof/u.model -rw-r--r-- root/root 523 2026-02-28 13:10 ./usr/share/reprof/ub.features -rw-r--r-- root/root 2863605 2026-02-28 13:10 ./usr/share/reprof/ub.model -rw-r--r-- root/root 523 2026-02-28 13:10 ./usr/share/reprof/uu.features -rw-r--r-- root/root 1935481 2026-02-28 13:10 ./usr/share/reprof/uu.model reprof_1.0.1-10_all.deb ----------------------- new Debian package, version 2.0. size 14452 bytes: control archive=1184 bytes. 747 bytes, 18 lines control 1401 bytes, 18 lines md5sums Package: reprof Version: 1.0.1-10 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 98 Depends: perl:any, librg-reprof-bundle-perl Section: science Priority: optional Homepage: https://rostlab.org/ Description: protein secondary structure and accessibility predictor 'reprof' is an improved implementation of 'prof', a popular protein secondary structure and accessibility predictor. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance. . This package provides the 'reprof' command. It is only a command line interface to the functionality provided by the modules in librg-reprof-bundle-perl. drwxr-xr-x root/root 0 2026-02-28 13:10 ./ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/bin/ -rwxr-xr-x root/root 3977 2026-02-28 13:10 ./usr/bin/reprof drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/doc/reprof/ -rw-r--r-- root/root 1265 2026-02-28 13:10 ./usr/share/doc/reprof/README.test -rw-r--r-- root/root 879 2026-02-28 13:10 ./usr/share/doc/reprof/changelog.Debian.gz -rw-r--r-- root/root 265 2012-01-13 15:41 ./usr/share/doc/reprof/changelog.gz -rw-r--r-- root/root 1357 2026-02-28 13:10 ./usr/share/doc/reprof/copyright drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/doc/reprof/examples/ -rw-r--r-- root/root 28389 2026-02-28 13:10 ./usr/share/doc/reprof/examples/example.Q -rw-r--r-- root/root 5957 2026-02-28 13:10 ./usr/share/doc/reprof/examples/example.Q.reprof -rw-r--r-- root/root 182 2026-02-28 13:10 ./usr/share/doc/reprof/examples/example.fasta -rw-r--r-- root/root 6017 2026-02-28 13:10 ./usr/share/doc/reprof/examples/example.fasta.reprof -rw-r--r-- root/root 15 2026-02-28 13:10 ./usr/share/doc/reprof/examples/mutations.txt -rw-r--r-- root/root 5957 2026-02-28 13:10 ./usr/share/doc/reprof/examples/mutations_example.Q.reprof -rw-r--r-- root/root 6019 2026-02-28 13:10 ./usr/share/doc/reprof/examples/mutations_example.Q.reprof_F172P -rw-r--r-- root/root 6016 2026-02-28 13:10 ./usr/share/doc/reprof/examples/mutations_example.Q.reprof_M1Q -rw-r--r-- root/root 6011 2026-02-28 13:10 ./usr/share/doc/reprof/examples/mutations_example.Q.reprof_N34Y -rw-r--r-- root/root 6017 2026-02-28 13:10 ./usr/share/doc/reprof/examples/mutations_example.Q.reprof_ORI -rw-r--r-- root/root 1783 2026-02-28 13:10 ./usr/share/doc/reprof/installation-test -rw-r--r-- root/root 560 2026-02-28 13:10 ./usr/share/doc/reprof/test-models.t drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/man/ drwxr-xr-x root/root 0 2026-02-28 13:10 ./usr/share/man/man1/ -rw-r--r-- root/root 2216 2026-02-28 13:10 ./usr/share/man/man1/reprof.1.gz +------------------------------------------------------------------------------+ | Post Build Sat, 28 Feb 2026 17:02:10 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 28 Feb 2026 17:02:10 +0000 | +------------------------------------------------------------------------------+ Purging /build/reprof-okq0zg Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 28 Feb 2026 17:02:10 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 94564 Build-Time: 32 Distribution: perl-5.42-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/reprof_1.0.1-10.dsc Machine Architecture: amd64 Package: reprof Package-Time: 40 Source-Version: 1.0.1-10 Space: 94564 Status: successful Version: 1.0.1-10 -------------------------------------------------------------------------------- Finished at 2026-02-28T17:02:09Z Build needed 00:00:40, 94564k disk space