sbuild (Debian sbuild) 0.91.5 (17 December 2025) on carme.larted.org.uk +==============================================================================+ | minc-tools 2.3.00+dfsg-16 (amd64) Sun, 22 Feb 2026 17:01:33 +0000 | +==============================================================================+ Package: minc-tools Version: 2.3.00+dfsg-16 Source Version: 2.3.00+dfsg-16 Distribution: perl-5.42-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sun, 22 Feb 2026 17:01:33 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup minc-tools_2.3.00+dfsg-16 perl-5.42-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup minc-tools_2.3.00+dfsg-16 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sun, 22 Feb 2026 17:01:34 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://deb.debian.org/debian sid InRelease Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sun, 22 Feb 2026 17:01:36 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/minc-tools_2.3.00+dfsg-16.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 22 Feb 2026 17:01:36 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev, libnifti2-dev, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev, debhelper, build-essential Filtered Build-Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev, libnifti2-dev, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev, debhelper, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/minc-tools-3wEt5d/resolver-5N02hL/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/minc-tools-3wEt5d/resolver-5N02hL/apt_archive ./ InRelease Get:2 copy:/build/minc-tools-3wEt5d/resolver-5N02hL/apt_archive ./ Release [609 B] Ign:3 copy:/build/minc-tools-3wEt5d/resolver-5N02hL/apt_archive ./ Release.gpg Get:4 copy:/build/minc-tools-3wEt5d/resolver-5N02hL/apt_archive ./ Sources [719 B] Get:5 copy:/build/minc-tools-3wEt5d/resolver-5N02hL/apt_archive ./ Packages [758 B] Fetched 2086 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdextrautils cmake cmake-data comerr-dev debhelper dh-autoreconf dh-strip-nondeterminism dwz file flex fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern gettext gettext-base groff-base hdf5-helpers intltool-debian krb5-multidev libaec-dev libaec0 libarchive-zip-perl libarchive13t64 libbrotli-dev libbrotli1 libcairo2 libcom-err2 libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdebhelper-perl libelf1t64 libevent-2.1-7t64 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libice6 libicu76 libidn2-dev libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp26 libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5-dev libkrb5support0 libldap-dev liblzma-dev libmagic-mgc libmagic1t64 libminc-dev libminc2-5.3.0t64 libmpfi0 libnetcdf-dev libnetcdf22 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libngtcp2-dev libnifti2-2 libnifti2-dev libnifticdf-dev libnifticdf2 libniftiio-dev libniftiio2t64 libp11-kit-dev libpaper-utils libpaper2 libpipeline1 libpixman-1-0 libpkgconf7 libpng16-16t64 libpotrace0 libproc2-0 libpsl-dev libpsl5t64 libptexenc1 librhash1 librtmp-dev librtmp1 libsm6 libssh2-1-dev libssh2-1t64 libssl-dev libsynctex2 libsz2 libtasn1-6-dev libteckit0 libtexlua53-5 libtext-charwidth-perl libtext-wrapi18n-perl libtool libuchardet0 libunbound8 libuv1t64 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2-16 libxml2-dev libxmu6 libxpm4 libxrender1 libxt6t64 libznz-dev libznz3 libzstd-dev libzzip-0-13t64 m4 man-db nettle-dev pkgconf pkgconf-bin po-debconf procps sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common xdg-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc cmake-doc cmake-format elpa-cmake-mode ninja-build doc-base dh-make flex-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc lrzip libcurl4-doc libidn-dev low-memory-monitor gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc krb5-user libhdf5-doc liblzma-doc libmpfi-doc netcdf-bin netcdf-doc libnghttp2-doc p11-kit-doc libssl-doc libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex Recommended packages: libfl-dev curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libtasn1-doc libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdextrautils cmake cmake-data comerr-dev debhelper dh-autoreconf dh-strip-nondeterminism dwz file flex fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern gettext gettext-base groff-base hdf5-helpers intltool-debian krb5-multidev libaec-dev libaec0 libarchive-zip-perl libarchive13t64 libbrotli-dev libbrotli1 libcairo2 libcom-err2 libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdebhelper-perl libelf1t64 libevent-2.1-7t64 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libice6 libicu76 libidn2-dev libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp26 libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5-dev libkrb5support0 libldap-dev liblzma-dev libmagic-mgc libmagic1t64 libminc-dev libminc2-5.3.0t64 libmpfi0 libnetcdf-dev libnetcdf22 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libngtcp2-dev libnifti2-2 libnifti2-dev libnifticdf-dev libnifticdf2 libniftiio-dev libniftiio2t64 libp11-kit-dev libpaper-utils libpaper2 libpipeline1 libpixman-1-0 libpkgconf7 libpng16-16t64 libpotrace0 libproc2-0 libpsl-dev libpsl5t64 libptexenc1 librhash1 librtmp-dev librtmp1 libsm6 libssh2-1-dev libssh2-1t64 libssl-dev libsynctex2 libsz2 libtasn1-6-dev libteckit0 libtexlua53-5 libtext-charwidth-perl libtext-wrapi18n-perl libtool libuchardet0 libunbound8 libuv1t64 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2-16 libxml2-dev libxmu6 libxpm4 libxrender1 libxt6t64 libznz-dev libznz3 libzstd-dev libzzip-0-13t64 m4 man-db nettle-dev pkgconf pkgconf-bin po-debconf procps sbuild-build-depends-main-dummy sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common xdg-utils zlib1g-dev 0 upgraded, 168 newly installed, 0 to remove and 0 not upgraded. Need to get 110 MB/110 MB of archives. After this operation, 370 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 libtext-charwidth-perl amd64 0.04-11+b6 [9548 B] Get:2 copy:/build/minc-tools-3wEt5d/resolver-5N02hL/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:3 file:/srv/reprepro perl-5.42/main amd64 libldap-dev amd64 2.6.10+dfsg-1+b2 [313 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 flex amd64 2.6.4-8.2+b5 [425 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.4-1 [116 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9+b1 [66.1 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9+b1 [883 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b1 [338 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b1 [110 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5+b1 [43.8 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b1 [68.8 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.3-4 [98.9 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:20 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 bison amd64 2:3.8.2+dfsg-1+b3 [1170 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.2.3-2 [2556 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.8.5-1 [362 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b8 [25.1 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b1 [9784 B] Get:36 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.68.0-1 [79.8 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b2 [59.8 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3+b1 [60.7 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1+b1 [245 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.19.0~rc2-1 [414 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-5 [82.6 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1.1 [135 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2+b1 [156 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.2.3-2 [13.0 MB] Get:48 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-3+b8 [56.7 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.30 [92.7 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-9 [540 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21+nmu1 [11.7 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:55 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.30 [942 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.6+repack-2 [22.1 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.22.1-2 [60.3 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.22.1-2 [42.5 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.22.1-2 [43.4 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.22.1-2 [56.2 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.22.1-2 [127 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.5-1 [23.5 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.5-1 [19.0 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.5-1 [25.3 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.2.0-3 [324 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.55-1 [288 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.14.1+dfsg-2 [493 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1+b1 [259 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1+b1 [20.8 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-2 [27.9 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1+b1 [824 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1+b1 [27.7 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-3 [544 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.19.0~rc2-1 [407 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b2 [184 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.24.2-1 [615 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.12-3 [475 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-4+b1 [103 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.26.2-2 [223 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.21.0-2 [99.7 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5+b1 [330 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5+b1 [642 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.2-1 [1322 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.12-3 [1450 kB] Get:101 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.22.1-2 [16.1 kB] Get:102 http://deb.debian.org/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:103 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:104 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:105 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.68.0-1 [119 kB] Get:106 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.12.0-1 [95.5 kB] Get:107 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.16.0-1 [25.2 kB] Get:108 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.16.0-1 [193 kB] Get:109 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b2 [80.3 kB] Get:110 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-3 [919 kB] Get:111 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3+b1 [69.9 kB] Get:112 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.5.5-1 [2978 kB] Get:113 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1+b1 [394 kB] Get:114 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-3+b1 [375 kB] Get:115 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.19.0~rc2-1 [531 kB] Get:116 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-13 [862 kB] Get:117 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.87.2-3 [1552 kB] Get:118 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-11+b1 [77.0 kB] Get:119 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.3.2-2 [514 kB] Get:120 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.6+repack-2 [1360 kB] Get:121 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.6+repack-2 [132 kB] Get:122 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.6+repack-2 [107 kB] Get:123 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [64.7 kB] Get:124 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.6+repack-2 [39.5 kB] Get:125 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.6+repack-2 [20.0 kB] Get:126 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:127 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get:128 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get:129 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.6+repack-2 [3199 kB] Get:130 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get:131 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1+b1 [66.8 kB] Get:132 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4+b1 [9752 kB] Get:133 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5 [159 kB] Get:134 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.2-2 [366 kB] Get:135 http://deb.debian.org/debian unstable/main amd64 libnetcdf22 amd64 1:4.9.3-1+b2 [522 kB] Get:136 http://deb.debian.org/debian unstable/main amd64 libminc2-5.3.0t64 amd64 2.4.07-2 [242 kB] Get:137 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.15.1+dfsg-2+b1 [745 kB] Get:138 http://deb.debian.org/debian unstable/main amd64 libnetcdf-dev amd64 1:4.9.3-1+b2 [116 kB] Get:139 http://deb.debian.org/debian unstable/main amd64 libminc-dev amd64 2.4.07-2 [70.0 kB] Get:140 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-4+b1 [36.7 kB] Get:141 http://deb.debian.org/debian unstable/main amd64 libznz3 amd64 3.0.1-9.1+b2 [10.4 kB] Get:142 http://deb.debian.org/debian unstable/main amd64 libnifti2-2 amd64 3.0.1-9.1+b2 [76.8 kB] Get:143 http://deb.debian.org/debian unstable/main amd64 libnifticdf2 amd64 3.0.1-9.1+b2 [53.6 kB] Get:144 http://deb.debian.org/debian unstable/main amd64 libnifticdf-dev amd64 3.0.1-9.1+b2 [59.4 kB] Get:145 http://deb.debian.org/debian unstable/main amd64 libniftiio2t64 amd64 3.0.1-9.1+b2 [59.4 kB] Get:146 http://deb.debian.org/debian unstable/main amd64 libniftiio-dev amd64 3.0.1-9.1+b2 [68.8 kB] Get:147 http://deb.debian.org/debian unstable/main amd64 libznz-dev amd64 3.0.1-9.1+b2 [10.8 kB] Get:148 http://deb.debian.org/debian unstable/main amd64 libnifti2-dev amd64 3.0.1-9.1+b2 [95.7 kB] Get:149 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b3 [16.7 kB] Get:150 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b3 [16.5 kB] Get:151 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b3 [25.5 kB] Get:152 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2025.20250727.75242+ds-5 [54.3 kB] Get:153 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1+b1 [37.9 kB] Get:154 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2025.20250727.75242+ds-5 [65.0 kB] Get:155 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.13+ds-1 [369 kB] Get:156 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5 [116 kB] Get:157 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b1 [191 kB] Get:158 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-4 [59.4 kB] Get:159 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b4 [56.6 kB] Get:160 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1+b1 [215 kB] Get:161 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.2-2 [79.8 kB] Get:162 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [59.2 kB] Get:163 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:164 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.20 [29.7 kB] Get:165 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2025.20250727.75242+ds-5 [8692 kB] Get:166 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:167 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2025.20260124-1 [23.1 MB] Get:168 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2025.20260124-1 [1340 kB] Preconfiguring packages ... Fetched 110 MB in 1s (136 MB/s) Selecting previously unselected package m4. (Reading database ... 23422 files and directories currently installed.) Preparing to unpack .../000-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package flex. Preparing to unpack .../001-flex_2.6.4-8.2+b5_amd64.deb ... Unpacking flex (2.6.4-8.2+b5) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../002-libexpat1_2.7.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.4-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../003-libtext-charwidth-perl_0.04-11+b6_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b6) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../004-libproc2-0_2%3a4.0.4-9+b1_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9+b1) ... Selecting previously unselected package procps. 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Setting up libteckit0:amd64 (2.5.13+ds-1) ... Setting up libjsoncpp26:amd64 (1.9.6-5) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1+b2) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:amd64 (2025.20250727.75242+ds-5) ... Setting up libproc2-0:amd64 (2:4.0.4-9+b1) ... Setting up comerr-dev:amd64 (2.1-1.47.2-3+b8) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:amd64 (3.5.5-1) ... Setting up libpng16-16t64:amd64 (1.6.55-1) ... Setting up autopoint (0.23.2-1) ... Setting up libmpfi0:amd64 (1.5.4+ds-4+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libnifticdf-dev:amd64 (3.0.1-9.1+b2) ... Setting up pkgconf-bin (2.5.1-4) ... Setting up libk5crypto3:amd64 (1.22.1-2) ... Setting up libidn2-dev:amd64 (2.3.8-4+b1) ... Setting up libkpathsea6:amd64 (2025.20250727.75242+ds-5) ... Setting up libgfortran5:amd64 (15.2.0-13) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libnghttp3-dev:amd64 (1.12.0-1) ... Setting up liblzma-dev:amd64 (5.8.2-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-3) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b1) ... Setting up libznz3:amd64 (3.0.1-9.1+b2) ... Setting up procps (2:4.0.4-9+b1) ... Setting up libniftiio2t64:amd64 (3.0.1-9.1+b2) ... Setting up bison (2:3.8.2+dfsg-1+b3) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up fonts-lmodern (2.005-1) ... Setting up libx11-6:amd64 (2:1.8.12-1+b1) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up cmake-data (4.2.3-2) ... Setting up librhash1:amd64 (1.4.6-1.1) ... Setting up libkrb5-3:amd64 (1.22.1-2) ... Setting up libicu76:amd64 (76.1-4+b1) ... Setting up libpaper2:amd64 (2.2.5-0.3+b3) ... Setting up libssh2-1t64:amd64 (1.11.1-1+b1) ... Setting up libtasn1-6-dev:amd64 (4.21.0-2) ... Setting up libarchive13t64:amd64 (3.8.5-1) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libbrotli-dev:amd64 (1.2.0-3) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ... Setting up libp11-kit-dev:amd64 (0.26.2-2) ... Setting up libsz2:amd64 (1.1.5-1) ... Setting up libsynctex2:amd64 (2025.20250727.75242+ds-5) ... Setting up libpotrace0:amd64 (1.16-2+b3) ... Setting up automake (1:1.18.1-3) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:amd64 (2:1.1.1-1+b1) ... Setting up flex (2.6.4-8.2+b5) ... Setting up gettext (0.23.2-1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5+b1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b4) ... Setting up nettle-dev:amd64 (3.10.2-1) ... Setting up libxrender1:amd64 (1:0.9.12-1+b1) ... Setting up libtool (2.5.4-9) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libniftiio-dev:amd64 (3.0.1-9.1+b2) ... Setting up libaec-dev:amd64 (1.1.5-1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-4) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.16.0-1) ... Setting up libpaper-utils (2.2.5-0.3+b3) ... Setting up libngtcp2-dev:amd64 (1.16.0-1) ... Setting up pkgconf:amd64 (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21+nmu1) ... Setting up libxml2-dev:amd64 (2.15.1+dfsg-2+b1) ... Setting up libptexenc1:amd64 (2025.20250727.75242+ds-5) ... Setting up libfreetype6:amd64 (2.14.1+dfsg-2) ... Setting up libznz-dev:amd64 (3.0.1-9.1+b2) ... Setting up libnifti2-2:amd64 (3.0.1-9.1+b2) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up ucf (3.0052) ... Setting up libssh2-1-dev:amd64 (1.11.1-1+b1) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-10) ... Setting up libharfbuzz0b:amd64 (12.3.2-2) ... Setting up libnifti2-dev (3.0.1-9.1+b2) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libsm6:amd64 (2:1.2.6-1+b1) ... Setting up libgnutls28-dev:amd64 (3.8.12-3) ... Setting up libnghttp2-dev:amd64 (1.68.0-1) ... Setting up libxi6:amd64 (2:1.8.2-2) ... Setting up libcurl4t64:amd64 (8.19.0~rc2-1) ... Setting up po-debconf (1.0.22) ... Setting up libcurl3t64-gnutls:amd64 (8.19.0~rc2-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-3) ... Setting up tex-common (6.20) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libgssrpc4t64:amd64 (1.22.1-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3+b1) ... Setting up libhdf5-310:amd64 (1.14.6+repack-2) ... Setting up cmake (4.2.3-2) ... Setting up libhdf5-fortran-310:amd64 (1.14.6+repack-2) ... Setting up libkadm5clnt-mit12:amd64 (1.22.1-2) ... Setting up libhdf5-cpp-310:amd64 (1.14.6+repack-2) ... Setting up libhdf5-hl-310:amd64 (1.14.6+repack-2) ... Setting up libxmu6:amd64 (2:1.1.3-4) ... Setting up libkdb5-10t64:amd64 (1.22.1-2) ... Setting up libnetcdf22:amd64 (1:4.9.3-1+b2) ... Setting up debhelper (13.30) ... Setting up libxaw7:amd64 (2:1.0.16-1+b1) ... Setting up texlive-binaries (2025.20250727.75242+ds-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libkadm5srv-mit12:amd64 (1.22.1-2) ... Setting up texlive-base (2025.20260124-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libminc2-5.3.0t64:amd64 (2.4.07-2) ... Setting up krb5-multidev:amd64 (1.22.1-2) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.6+repack-2) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.6+repack-2) ... Setting up libkrb5-dev:amd64 (1.22.1-2) ... Setting up texlive-latex-base (2025.20260124-1) ... Setting up libcurl4-gnutls-dev:amd64 (8.19.0~rc2-1) ... Setting up libhdf5-dev (1.14.6+repack-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnetcdf-dev (1:4.9.3-1+b2) ... Setting up libminc-dev:amd64 (2.4.07-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-13) ... Processing triggers for tex-common (6.20) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures Sun, 22 Feb 2026 17:02:12 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Sun, 22 Feb 2026 17:02:12 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.18.5+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.18.5-1 (2026-01-16) amd64 (x86_64) Toolchain package versions: binutils_2.46-2 dpkg-dev_1.23.5 g++-14_14.3.0-12 g++-15_15.2.0-13 gcc-14_14.3.0-12 gcc-15_15.2.0-13 libc6-dev_2.42-13 libstdc++-14-dev_14.3.0-12 libstdc++-15-dev_15.2.0-13 libstdc++6_15.2.0-13 linux-libc-dev_6.18.12-1 Package versions: adduser_3.154 apt_3.1.16 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-2 binutils_2.46-2 binutils-common_2.46-2 binutils-gold_2.44-3 binutils-gold-x86-64-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.46-2 bison_2:3.8.2+dfsg-1+b3 bsdextrautils_2.41.3-4 bsdutils_1:2.41.3-4 build-essential_12.12 bzip2_1.0.8-6+b1 cmake_4.2.3-2 cmake-data_4.2.3-2 comerr-dev_2.1-1.47.2-3+b8 coreutils_9.7-3 cpp_4:15.2.0-5 cpp-14_14.3.0-12 cpp-14-x86-64-linux-gnu_14.3.0-12 cpp-15_15.2.0-13 cpp-15-x86-64-linux-gnu_15.2.0-13 cpp-x86-64-linux-gnu_4:15.2.0-5 dash_0.5.12-12 debconf_1.5.92 debhelper_13.30 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21+nmu1 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dirmngr_2.4.8-5 dpkg_1.23.5 dpkg-dev_1.23.5 dwz_0.16-2 eatmydata_131-2 file_1:5.46-5+b1 findutils_4.10.0-3 flex_2.6.4-8.2+b5 fontconfig-config_2.17.1-5 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lmodern_2.005-1 g++_4:15.2.0-5 g++-14_14.3.0-12 g++-14-x86-64-linux-gnu_14.3.0-12 g++-15_15.2.0-13 g++-15-x86-64-linux-gnu_15.2.0-13 g++-x86-64-linux-gnu_4:15.2.0-5 gcc_4:15.2.0-5 gcc-14_14.3.0-12 gcc-14-base_14.3.0-12 gcc-14-x86-64-linux-gnu_14.3.0-12 gcc-15_15.2.0-13 gcc-15-base_15.2.0-13 gcc-15-x86-64-linux-gnu_15.2.0-13 gcc-x86-64-linux-gnu_4:15.2.0-5 gettext_0.23.2-1 gettext-base_0.23.2-1 gnupg_2.4.8-5 gnupg-l10n_2.4.8-5 gpg_2.4.8-5 gpg-agent_2.4.8-5 gpgconf_2.4.8-5 gpgsm_2.4.8-5 grep_3.12-1 groff-base_1.23.0-10 gzip_1.13-1 hdf5-helpers_1.14.6+repack-2 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.22.1-2 libacl1_2.3.2-3 libaec-dev_1.1.5-1 libaec0_1.1.5-1 libapt-pkg7.0_3.1.16 libarchive-zip-perl_1.68-1 libarchive13t64_3.8.5-1 libasan8_15.2.0-13 libassuan9_3.0.2-2+b1 libatomic1_15.2.0-13 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-2 libblkid1_2.41.3-4 libbrotli-dev_1.2.0-3 libbrotli1_1.2.0-3 libbsd0_0.12.2-2+b1 libbz2-1.0_1.0.8-6+b1 libc-bin_2.42-13 libc-dev-bin_2.42-13 libc-gconv-modules-extra_2.42-13 libc-l10n_2.42-13 libc6_2.42-13 libc6-dev_2.42-13 libcairo2_1.18.4-3 libcap-ng0_0.9.1-1 libcap2_1:2.75-10+b5 libcc1-0_15.2.0-13 libcom-err2_1.47.2-3+b8 libcrypt-dev_1:4.5.1-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.46-2 libctf0_2.46-2 libcurl3t64-gnutls_8.19.0~rc2-1 libcurl4-gnutls-dev_8.19.0~rc2-1 libcurl4t64_8.19.0~rc2-1 libdb5.3t64_5.3.28+dfsg2-11 libdebconfclient0_0.282+b2 libdebhelper-perl_13.30 libdpkg-perl_1.23.5 libeatmydata1_131-2+b2 libelf1t64_0.194-1 libevent-2.1-7t64_2.1.12-stable-10+b2 libexpat1_2.7.4-1 libffi8_3.5.2-3+b1 libfile-stripnondeterminism-perl_1.15.0-1 libfontconfig1_2.17.1-5 libfreetype6_2.14.1+dfsg-2 libgcc-14-dev_14.3.0-12 libgcc-15-dev_15.2.0-13 libgcc-s1_15.2.0-13 libgcrypt20_1.11.2-3+b1 libgdbm-compat4t64_1.26-1+b1 libgdbm6t64_1.26-1+b1 libgfortran5_15.2.0-13 libglib2.0-0t64_2.87.2-3 libgmp-dev_2:6.3.0+dfsg-5+b1 libgmp10_2:6.3.0+dfsg-5+b1 libgmpxx4ldbl_2:6.3.0+dfsg-5+b1 libgnutls-dane0t64_3.8.12-3 libgnutls28-dev_3.8.12-3 libgnutls30t64_3.8.12-3 libgomp1_15.2.0-13 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------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: minc-tools Binary: minc-tools Architecture: any Version: 2.3.00+dfsg-16 Maintainer: Debian Med Packaging Team Uploaders: Steve M. Robbins , Andreas Tille Homepage: https://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/med-team/minc-tools Vcs-Git: https://salsa.debian.org/med-team/minc-tools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev, libnifti2-dev, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev, debhelper Package-List: minc-tools deb science optional arch=any Checksums-Sha1: d5f2d7d633410b1a1f1d4026adcd2c125a16847f 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz 14975bba77611d5bf55dff1eec8097392e6e9faa 18548 minc-tools_2.3.00+dfsg-16.debian.tar.xz Checksums-Sha256: 002b01c54b11305dc7350cc7e553debc4d07d4896b2eee850233d07ecc9989b9 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz 1c3bb863707d55dff10e98127381f2939bbdad4492c8e5b2d4df44b8e58e9273 18548 minc-tools_2.3.00+dfsg-16.debian.tar.xz Files: 629912702e72bce17b78361027105e2b 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz 38200b5ac0fc06c55de185f656dc7b6e 18548 minc-tools_2.3.00+dfsg-16.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmma7JUACgkQYAMWptwn dHZYAg//USE554AOCwJn6SImAx2Iexg36mp1PiNOuNVovWF6sRsI8pjmqSR4oYpP 2MduID2T535/5WRwZtiQbiifc/KVZpzF/fumnSYLJkKnMDV/vjGJmfVjEHnMAtz1 HCGSqoAvtcdM6K8EbxhPLRMnSiLi1Ui6cfw85CEvKz92cdiS7GJPSUc+qfb90R2b OWuEzGY77Pzj5lIYRlXcXlCLJwofEWpyZFYxpIbCrhvK8S8w3p/NjKejQdKO+MGf x1LDz/KB6RHNxHQW+qiBRR07KE8gS7k1fHCMwSvkaoGelsMwEwRLjO2+JHQlaY0/ RxS0WOd7h0odEiyfbbL8AjdQFPxVMhq/VWXCYGDZtUBUww2yE30SQgoJI+Xw/V8m 3/noy1PSHmlEAr96mUvtXtSI8NqlKMxrJu5DGzUXBYrB83I7yitLitJooz71pYlq 5wMFDhpb1OMUAOJleyzFS4e9twpfgMyWuvWAdMMceEEa9t7Ynf98gU7tBiR1EWUB Hj1YAzWT8hTA7Aq/i48ECHEj6b/HOc2ET6Z39JCRjw43J+qUgW7I5gdmo2w0Gn84 0sxbIBN/uvPJdXlKhqQktRJVSDSF9i1TYBFjdK0N5Rz1ryVuo3jMACGlA0LQkROv zevE/PyAsUgEsZmcGRq0YRTid//LnX2phu2rMG3euvK0DECh580= =Oi6+ -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./minc-tools_2.3.00+dfsg-16.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./minc-tools_2.3.00+dfsg-16.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting minc-tools in /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg dpkg-source: info: unpacking minc-tools_2.3.00+dfsg.orig.tar.gz dpkg-source: info: unpacking minc-tools_2.3.00+dfsg-16.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_mincedit-sensible-viewer.diff dpkg-source: info: applying build-with-libnifti dpkg-source: info: applying hdf5-1.10-support.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying fix_manpages.patch dpkg-source: info: applying fix-gcc10-build.patch dpkg-source: info: applying mnc2nii-use-size-t.patch dpkg-source: info: applying netcdf-4.9.3.patch dpkg-source: info: applying cmake_4.2.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sun, 22 Feb 2026 17:02:13 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network minc-tools_2.3.00+dfsg-16 perl-5.42-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network minc-tools_2.3.00+dfsg-16 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg SCHROOT_ALIAS_NAME=perl-5.42-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-73c94882-25d7-41bc-bdaa-7230dadf81d4 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-16 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building minc-tools using existing ./minc-tools_2.3.00+dfsg.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building minc-tools in minc-tools_2.3.00+dfsg-16.debian.tar.xz dpkg-source: info: building minc-tools in minc-tools_2.3.00+dfsg-16.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg' dh_auto_configure -- cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:6 (PROJECT): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for tmpnam -- Looking for tmpnam - found -- Looking for tempnam -- Looking for tempnam - found -- Looking for strerror -- Looking for strerror - found -- Looking for popen -- Looking for popen - found -- Looking for fork -- Looking for fork - found -- Looking for vfork -- Looking for vfork - found -- Looking for fdopen -- Looking for fdopen - found -- Looking for strdup -- Looking for strdup - found -- Looking for getpwnam -- Looking for getpwnam - found -- Looking for select -- Looking for select - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for system -- Looking for system - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for include file sys/dir.h -- Looking for include file sys/dir.h - found -- Looking for include file sys/ndir.h -- Looking for include file sys/ndir.h - not found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/wait.h -- Looking for include file sys/wait.h - found -- Looking for include file values.h -- Looking for include file values.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file dlfcn.h -- Looking for include file dlfcn.h - found -- Looking for include file vfork.h -- Looking for include file vfork.h - not found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Found BISON: /usr/bin/bison (found version "3.8.2") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Configuring done (3.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j2 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg -B/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake "--color=" mincaverage make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake "--color=" invert_raw_image make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 1%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -MF CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o.d -o CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincaverage/mincaverage.c [ 2%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -MF CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o.d -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c [ 3%] Linking C executable invert_raw_image cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/invert_raw_image.dir/link.d CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 3%] Built target invert_raw_image make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 4%] Linking C executable mincaverage cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 [ 5%] [FLEX][lex] Building scanner with flex 2.6.4 cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E make_directory /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/flex -o/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l [ 6%] [BISON][gram] Building parser with bison 3.8.2 cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E make_directory /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/bison --debug -d -o /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/gram.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr] /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/mincaverage.dir/link.d CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 6%] Built target mincaverage make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 7%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E make_directory /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/flex -o/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake "--color=" minccalc [ 7%] [BISON][ncgentab] Building parser with bison 3.8.2 cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E make_directory /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/bison -d -o /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y [ 8%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -MF CMakeFiles/minccalc.dir/minccalc/minccalc.c.o.d -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: warning: 1 shift/reduce conflict [-Wconflicts-sr] /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake "--color=" mincgen make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 9%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/main.c.o -MF CMakeFiles/mincgen.dir/mincgen/main.c.o.d -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/main.c [ 10%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/ncgentab.c.o -MF CMakeFiles/mincgen.dir/ncgentab.c.o.d -o CMakeFiles/mincgen.dir/ncgentab.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c [ 10%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o -MF CMakeFiles/minccalc.dir/minccalc/eval.c.o.d -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c [ 10%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/ncgenyy.c.o -MF CMakeFiles/mincgen.dir/ncgenyy.c.o.d -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c [ 11%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o -MF CMakeFiles/minccalc.dir/minccalc/ident.c.o.d -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c [ 12%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/node.c.o -MF CMakeFiles/minccalc.dir/minccalc/node.c.o.d -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/node.c [ 13%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o -MF CMakeFiles/minccalc.dir/minccalc/optim.c.o.d -o CMakeFiles/minccalc.dir/minccalc/optim.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/optim.c [ 14%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o -MF CMakeFiles/minccalc.dir/minccalc/scalar.c.o.d -o CMakeFiles/minccalc.dir/minccalc/scalar.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/scalar.c [ 14%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o -MF CMakeFiles/minccalc.dir/minccalc/sym.c.o.d -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c [ 15%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o -MF CMakeFiles/mincgen.dir/mincgen/escapes.c.o.d -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c [ 16%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o -MF CMakeFiles/mincgen.dir/mincgen/genlib.c.o.d -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c [ 17%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o -MF CMakeFiles/minccalc.dir/minccalc/vector.c.o.d -o CMakeFiles/minccalc.dir/minccalc/vector.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc/vector.c [ 18%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/lex.c.o -MF CMakeFiles/minccalc.dir/lex.c.o.d -o CMakeFiles/minccalc.dir/lex.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c [ 19%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/gram.c.o -MF CMakeFiles/minccalc.dir/gram.c.o.d -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/gram.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function ‘gen_c’: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:28: warning: ‘%.16g’ directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~ In function ‘cstring’, inlined from ‘gen_c’ at /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:27: note: assuming directive output of 22 bytes 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: In function ‘sprintf’, inlined from ‘cstring’ at /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:9, inlined from ‘gen_c’ at /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 24 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 20%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o -MF CMakeFiles/mincgen.dir/mincgen/getfill.c.o.d -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c [ 20%] Linking C executable minccalc cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 [ 20%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 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object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -MF CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o.d -o 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make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 33%] Built target mincdump make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend [ 33%] Built target mincexample2 make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake "--color=" mincexpand make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend make[3]: Entering directory 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-fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -MF CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o.d -o CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincexpand/mincexpand.c [ 34%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 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-ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/mincexpand.dir/link.d CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -o mincexpand -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 36%] Built target mincexpand make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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[ 41%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o [ 41%] Linking C executable minclookup cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -MF CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o.d -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c [ 43%] Linking C executable mincmakevector cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/mincmakescalar.dir/link.d CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 43%] Built target mincmakescalar make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake "--color=" mincmath make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 44%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -MF CMakeFiles/mincmath.dir/mincmath/mincmath.c.o.d -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/mincmakevector.dir/link.d CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target mincmakevector make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake "--color=" minc_modify_header make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 45%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -MF CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o.d -o CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minc_modify_header/minc_modify_header.c [ 46%] Linking C executable mincmath cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 [ 46%] Linking C executable minc_modify_header cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/mincmath.dir/link.d CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 46%] Built target mincmath /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/minc_modify_header.dir/link.d CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake "--color=" mincresample [ 46%] Built target minc_modify_header make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake "--color=" mincreshape [ 47%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -MF CMakeFiles/mincresample.dir/mincresample/mincresample.c.o.d -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 48%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function ‘create_output_file.constprop’: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:36: note: directive argument in the range [0, 2147483647] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~~~~~ In file included from /usr/include/stdio.h:970, from /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:207: In function ‘sprintf’, inlined from ‘create_output_file.constprop’ at /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 266 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 48%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -MF CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o.d -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c [ 48%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o.d -o 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-I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -MF CMakeFiles/mincstats.dir/mincstats/mincstats.c.o.d -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincstats/mincstats.c [ 52%] Linking C executable mincresample cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -MF CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o.d -o 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'/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 54%] Built target minctoraw make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake "--color=" mincwindow make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build make[3]: 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-ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -MF CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o.d -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincwindow/mincwindow.c [ 57%] Linking C executable mincwindow cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial 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-I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -MF CMakeFiles/mincsample.dir/mincsample/mincsample.c.o.d -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c [ 59%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 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CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lm -lminc2 -lz -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target mincmorph make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake "--color=" voxeltoworld make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 64%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -MF CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o.d -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/coordinates/voxeltoworld.c [ 65%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c [ 66%] Linking C executable voxeltoworld cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 [ 66%] Linking C executable rawtominc cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/voxeltoworld.dir/link.d CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lm -lminc2 -lz -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 66%] Built target voxeltoworld make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/rawtominc.dir/link.d CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake "--color=" worldtovoxel make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 66%] Built target rawtominc make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake "--color=" transformtags [ 67%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include 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make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 68%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/worldtovoxel.dir/link.d CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lm -lminc2 -lz -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target worldtovoxel make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake "--color=" xfmconcat make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 70%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -MF CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o.d -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/xfm/xfmconcat.c /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/transformtags.dir/link.d CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lm -lminc2 -lz -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target transformtags make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake "--color=" xfminvert make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 71%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -MF CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o.d -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c [ 72%] Linking C executable xfmconcat cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1 [ 73%] Linking C executable xfminvert cd 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conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c [ 81%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT 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conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c [ 82%] Linking C executable ecattominc cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/ecattominc.dir/link.d CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target ecattominc make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion 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-ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/minctoecat.dir/link.d CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o 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/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake "--color=" mnc2nii make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 90%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -MF CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o.d -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c [ 91%] Linking C static library libacr_nema.a cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 /usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o /usr/bin/ranlib libacr_nema.a make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target acr_nema make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake "--color=" nii2mnc make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 92%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -MF CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o.d -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function ‘main’: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Linking C executable mnc2nii cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/mnc2nii.dir/link.d CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lniftiio -lm -lminc2 -lz -ldl -lnetcdf -lniftiio make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 93%] Linking C executable nii2mnc [ 93%] Built target mnc2nii cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake "--color=" upet2mnc make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 94%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -MF CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o.d -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro ‘__TIME__’ might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: note: in expansion of macro ‘VERSIONSTR’ 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c: In function ‘upet_to_minc’: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro ‘__TIME__’ might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro ‘VERSIONSTR’ 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/nii2mnc.dir/link.d CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lminc2 -lz -lm -ldl -lnetcdf -lniftiio -lm -lminc2 -lz -ldl -lnetcdf -lniftiio make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 94%] Built target nii2mnc make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake "--color=" dcm2mnc make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time] 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:168:41: warning: macro ‘__TIME__’ might prevent reproducible builds [-Wdate-time] 168 | #define VERSION_STRING "2.01.02 built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: note: in expansion of macro ‘VERSION_STRING’ 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function ‘is_cdexport_file’: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1019:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1019 | fread(tst_str, 1, DICM_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function ‘is_ima_file’: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1042:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1042 | fread(mfg_str, 1, IMA_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function ‘use_the_files’: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:980:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 980 | fscanf(fp, "%s", pipe_output_name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 95%] Linking C executable upet2mnc cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 [ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/upet2mnc.dir/link.d CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 96%] Built target upet2mnc [ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c [ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c [ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function ‘setup_minc_variables’: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1084 | fread(data, 1, length, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c [100%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c [100%] Linking C executable dcm2mnc cd /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=gnu17 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--dependency-file=CMakeFiles/dcm2mnc.dir/link.d CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -o dcm2mnc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lz -lm -ldl -lnetcdf libacr_nema.a -lminc2 -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [100%] Built target dcm2mnc make[2]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j2 test ARGS\+=--verbose ARGS\+=-j2 make[1]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --verbose -j2 UpdateCTestConfiguration from :/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: mincinfo-test 1: Test command: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl 1: Working Directory: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/Testing 1: Environment variables: 1: MINCINFO_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincinfo 1: Test timeout computed to be: 1500 test 2 Start 2: mincstats-test 2: Test command: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl 2: Working Directory: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/Testing 2: Environment variables: 2: MINCSTATS_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincstats 2: Test timeout computed to be: 1500 1: Case 1 - Test the essential command line options. 2: Case 1 - Basic output. 2: Case 2 - Test the sum and sum2 options. 1: Case 2 - test operation with no command-line options. 2: Case 3 - Test the mean option. 1: Case 3 - test the dimnames option. 2: Case 4 - Test the stddev and variance options. 1: Case 4 - test the varnames option. 2: Case 5 - Test the min and max options. 1: Case 5 - test the dimlength option. 2: Case 6 - Test the CoM option. 1: Case 6 - test the vartype option. 2: Case 7 - Test the median and entropy options. 1: Case 7 - test the vardims option. 1: Case 8 - test the varatts option. 2: Case 8 - Test the histogram option. 2: Case 9 - Test the integer histogram option. 1: Case 9 - test the varatts option. 2: OK. 1/6 Test #2: mincstats-test ................... Passed 0.11 sec test 3 Start 3: mincaverage-test 3: Test command: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/Testing/mincaverage-test.sh 3: Working Directory: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/Testing 3: Environment variables: 3: MINCAVERAGE_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincaverage 3: MINCSTATS_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincstats 3: Test timeout computed to be: 1500 3: Processing:...Done 1: Case 10 - test the atttype option. 1: Case 11 - test the attvalue option. 1: Case 12 - test the minc_version option. 3: Normalizing:..Done 3: Processing:...Done 1: Case 13 - test the error_string option. 3: OK. 2/6 Test #3: mincaverage-test ................. Passed 0.05 sec test 4 Start 4: minccalc-test 4: Test command: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh 4: Working Directory: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/Testing 4: Environment variables: 4: MINCCALC_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/minccalc 4: MINCSTATS_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincstats 4: Test timeout computed to be: 1500 1: OK. 3/6 Test #1: mincinfo-test .................... Passed 0.17 sec test 5 Start 5: mincresample-test 5: Test command: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/Testing/mincresample-test.sh 5: Working Directory: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/Testing 5: Environment variables: 5: MINCRESAMPLE_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincresample 5: MINCSTATS_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincstats 5: Test timeout computed to be: 1500 5: Transforming slices:.....Done 4: Case 1...OK 5: Transforming slices:.....Done 4: Case 2...OK 5: OK. 4/6 Test #5: mincresample-test ................ Passed 0.05 sec test 6 Start 6: mincreshape-test 6: Test command: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl 6: Working Directory: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/Testing 6: Environment variables: 6: MINCRESHAPE_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincreshape 6: MINCSTATS_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincstats 6: MINCINFO_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincinfo 6: MINCEXTRACT_BIN=/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/mincextract 6: Test timeout computed to be: 1500 4: Case 3...OK 4: Case 4...OK 4: Case 5...OK...OK 4: Case 6...OK...OK...OK 4: Case 7...OK 4: Case 8...OK 6: OK. 5/6 Test #6: mincreshape-test ................. Passed 0.20 sec 4: Case 9...OK 4: No errors detected. 6/6 Test #4: minccalc-test .................... Passed 0.27 sec 100% tests passed, 0 tests failed out of 6 Total Test time (real) = 0.43 sec make[1]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/minc-tools/ cd obj-x86_64-linux-gnu && make -j2 install DESTDIR=/build/minc-tools-3wEt5d/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg -B/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccalc -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccalc" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincgen -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincgen" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/invert_raw_image -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/invert_raw_image" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincaverage -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincaverage" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconcat -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconcat" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconvert -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconvert" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccopy -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccopy" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdump -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdump" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincblob -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincblob" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccmp -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccmp" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincexpand -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincexpand" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincextract -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincextract" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincinfo -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincinfo" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minclookup -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minclookup" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakescalar -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakescalar" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakevector -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakevector" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmath -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmath" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minc_modify_header -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minc_modify_header" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincresample -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincresample" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincreshape -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincreshape" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincstats -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincstats" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoraw -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoraw" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincwindow -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincwindow" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmorph -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmorph" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincsample -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincsample" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/rawtominc -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/rawtominc" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/voxeltoworld -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/voxeltoworld" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/worldtovoxel -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/worldtovoxel" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/transformtags -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/transformtags" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfmconcat -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfmconcat" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfminvert -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfminvert" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdiff -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincedit -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincheader -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincview -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minchistory -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincpik -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/voxeltoworld.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincaverage.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincblob.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccalc.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccmp.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincconcat.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincconvert.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccopy.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincdiff.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincdump.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincedit.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincexpand.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincextract.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincgen.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincheader.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincinfo.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minclookup.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakescalar.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakevector.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmath.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minc_modify_header.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincresample.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincreshape.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincsample.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincstats.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoraw.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/invert_raw_image.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincview.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincwindow.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/rawtominc.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/transformtags.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfm2def.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmconcat.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmflip.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfminvert.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/dcm2mnc -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/dcm2mnc" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/ecattominc -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/ecattominc" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoecat -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoecat" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mnc2nii -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mnc2nii" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/nii2mnc -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/nii2mnc" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/upet2mnc -- Set non-toolchain portion of runtime path of "/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/upet2mnc" to "" -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/dcm2mnc.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/ecattominc.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/upet2mnc.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoecat.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mnc2nii.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/nii2mnc.1 -- Installing: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/vff2mnc.1 make[1]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg' cd debian/minc-tools && mkdir -p usr/share && mv usr/man usr/share dh_link /usr/share/man/man1/voxeltoworld.1 \ /usr/share/man/man1/worldtovoxel.1 for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-16_amd64.deb'. dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-16_amd64.deb'. dpkg-genbuildinfo -O../minc-tools_2.3.00+dfsg-16_amd64.buildinfo dpkg-genchanges -O../minc-tools_2.3.00+dfsg-16_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2026-02-22T17:02:34Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 22 Feb 2026 17:02:34 +0000 | +------------------------------------------------------------------------------+ minc-tools_2.3.00+dfsg-16_amd64.changes: ---------------------------------------- Format: 1.8 Date: Sun, 22 Feb 2026 12:44:50 +0100 Source: minc-tools Binary: minc-tools minc-tools-dbgsym Architecture: source amd64 Version: 2.3.00+dfsg-16 Distribution: perl-5.42-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: minc-tools - MNI medical image format tools Closes: 1125553 Changes: minc-tools (2.3.00+dfsg-16) unstable; urgency=medium . * Team upload. * Building with CMake 4.2 (Closes: #1125553) * Raising Standards version to 4.7.3: - Removing Priority: optional, which is default Checksums-Sha1: 76c8906609223bf4c02da1278953095932f5356a 1300 minc-tools_2.3.00+dfsg-16.dsc c1776c8fb8b88628e88fd63f06ec77671f6bc45f 18552 minc-tools_2.3.00+dfsg-16.debian.tar.xz 55658e96d3ee6c981d05492641d04d453f96e3e0 713416 minc-tools-dbgsym_2.3.00+dfsg-16_amd64.deb 5ae9034fb2ff48cfc113ceaa3e3eaf17380d766e 10131 minc-tools_2.3.00+dfsg-16_amd64.buildinfo b1c88f81a9fc793a7bc33c46c0b244fb95843fcd 388220 minc-tools_2.3.00+dfsg-16_amd64.deb Checksums-Sha256: 3b3239a9287a58a0a262cd27e1737e69e5f777b83ffb7b3be384a5bac3066b2c 1300 minc-tools_2.3.00+dfsg-16.dsc f9cc5808cad81d68467c6e85cc844538ceca2ce0c1e85fff9d38e5352f71db7e 18552 minc-tools_2.3.00+dfsg-16.debian.tar.xz 88420d02b4a64cbe18c45f1c618210972c94c863826d036a34cfd14ca0ac4bb8 713416 minc-tools-dbgsym_2.3.00+dfsg-16_amd64.deb 014a31e63ba5ae18c004968aa463ad97c18cd6f21085a30c685d631020b113a6 10131 minc-tools_2.3.00+dfsg-16_amd64.buildinfo d012479f789aa8055cf62cf4fd8ca959f8cc895b14941dea500b308ba77fc958 388220 minc-tools_2.3.00+dfsg-16_amd64.deb Files: fadb000abf3e75920815bfc00c24dbd6 1300 science optional minc-tools_2.3.00+dfsg-16.dsc 7f36d76f11fdae9a9c5a45396eb8e36d 18552 science optional minc-tools_2.3.00+dfsg-16.debian.tar.xz b33f27dc83e4f8a6481126177615f353 713416 debug optional minc-tools-dbgsym_2.3.00+dfsg-16_amd64.deb 3003edf3ab041844aa6301d263181a02 10131 science optional minc-tools_2.3.00+dfsg-16_amd64.buildinfo 5c1798c8ece32e362891d96ed68131ac 388220 science optional minc-tools_2.3.00+dfsg-16_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Sun, 22 Feb 2026 17:02:34 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: minc-tools Binary: minc-tools minc-tools-dbgsym Architecture: amd64 source Version: 2.3.00+dfsg-16 Checksums-Md5: fadb000abf3e75920815bfc00c24dbd6 1300 minc-tools_2.3.00+dfsg-16.dsc b33f27dc83e4f8a6481126177615f353 713416 minc-tools-dbgsym_2.3.00+dfsg-16_amd64.deb 5c1798c8ece32e362891d96ed68131ac 388220 minc-tools_2.3.00+dfsg-16_amd64.deb Checksums-Sha1: 76c8906609223bf4c02da1278953095932f5356a 1300 minc-tools_2.3.00+dfsg-16.dsc 55658e96d3ee6c981d05492641d04d453f96e3e0 713416 minc-tools-dbgsym_2.3.00+dfsg-16_amd64.deb b1c88f81a9fc793a7bc33c46c0b244fb95843fcd 388220 minc-tools_2.3.00+dfsg-16_amd64.deb Checksums-Sha256: 3b3239a9287a58a0a262cd27e1737e69e5f777b83ffb7b3be384a5bac3066b2c 1300 minc-tools_2.3.00+dfsg-16.dsc 88420d02b4a64cbe18c45f1c618210972c94c863826d036a34cfd14ca0ac4bb8 713416 minc-tools-dbgsym_2.3.00+dfsg-16_amd64.deb d012479f789aa8055cf62cf4fd8ca959f8cc895b14941dea500b308ba77fc958 388220 minc-tools_2.3.00+dfsg-16_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 22 Feb 2026 17:02:34 +0000 Build-Path: /build/minc-tools-3wEt5d/minc-tools-2.3.00+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-2), binutils (= 2.46-2), binutils-common (= 2.46-2), binutils-x86-64-linux-gnu (= 2.46-2), bison (= 2:3.8.2+dfsg-1+b3), bsdextrautils (= 2.41.3-4), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), cmake (= 4.2.3-2), cmake-data (= 4.2.3-2), comerr-dev (= 2.1-1.47.2-3+b8), coreutils (= 9.7-3), cpp (= 4:15.2.0-5), cpp-14 (= 14.3.0-12), cpp-14-x86-64-linux-gnu (= 14.3.0-12), cpp-15 (= 15.2.0-13), cpp-15-x86-64-linux-gnu (= 15.2.0-13), cpp-x86-64-linux-gnu (= 4:15.2.0-5), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 13.30), debianutils (= 5.23.2), dh-autoreconf (= 21+nmu1), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.5), dpkg-dev (= 1.23.5), dwz (= 0.16-2), file (= 1:5.46-5+b1), findutils (= 4.10.0-3), flex (= 2.6.4-8.2+b5), fontconfig-config (= 2.17.1-5), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-lmodern (= 2.005-1), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-13), g++-15-x86-64-linux-gnu (= 15.2.0-13), g++-x86-64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-14 (= 14.3.0-12), gcc-14-base (= 14.3.0-12), gcc-14-x86-64-linux-gnu (= 14.3.0-12), gcc-15 (= 15.2.0-13), gcc-15-base (= 15.2.0-13), gcc-15-x86-64-linux-gnu (= 15.2.0-13), gcc-x86-64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), hdf5-helpers (= 1.14.6+repack-2), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.22.1-2), libacl1 (= 2.3.2-3), libaec-dev (= 1.1.5-1), libaec0 (= 1.1.5-1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.8.5-1), libasan8 (= 15.2.0-13), libatomic1 (= 15.2.0-13), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-2), libblkid1 (= 2.41.3-4), libbrotli-dev (= 1.2.0-3), libbrotli1 (= 1.2.0-3), libbz2-1.0 (= 1.0.8-6+b1), libc-bin (= 2.42-13), libc-dev-bin (= 2.42-13), libc-gconv-modules-extra (= 2.42-13), libc6 (= 2.42-13), libc6-dev (= 2.42-13), libcairo2 (= 1.18.4-3), libcap-ng0 (= 0.9.1-1), libcap2 (= 1:2.75-10+b5), libcc1-0 (= 15.2.0-13), libcom-err2 (= 1.47.2-3+b8), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.46-2), libctf0 (= 2.46-2), libcurl3t64-gnutls (= 8.19.0~rc2-1), libcurl4-gnutls-dev (= 8.19.0~rc2-1), libcurl4t64 (= 8.19.0~rc2-1), libdb5.3t64 (= 5.3.28+dfsg2-11), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.30), libdpkg-perl (= 1.23.5), libelf1t64 (= 0.194-1), libevent-2.1-7t64 (= 2.1.12-stable-10+b2), libexpat1 (= 2.7.4-1), libffi8 (= 3.5.2-3+b1), libfile-stripnondeterminism-perl (= 1.15.0-1), libfontconfig1 (= 2.17.1-5), libfreetype6 (= 2.14.1+dfsg-2), libgcc-14-dev (= 14.3.0-12), libgcc-15-dev (= 15.2.0-13), libgcc-s1 (= 15.2.0-13), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgfortran5 (= 15.2.0-13), libglib2.0-0t64 (= 2.87.2-3), libgmp-dev (= 2:6.3.0+dfsg-5+b1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b1), libgnutls-dane0t64 (= 3.8.12-3), libgnutls28-dev (= 3.8.12-3), libgnutls30t64 (= 3.8.12-3), libgomp1 (= 15.2.0-13), libgprofng0 (= 2.46-2), libgraphite2-3 (= 1.3.14-11+b1), libgssapi-krb5-2 (= 1.22.1-2), libgssrpc4t64 (= 1.22.1-2), libharfbuzz0b (= 12.3.2-2), libhdf5-310 (= 1.14.6+repack-2), libhdf5-cpp-310 (= 1.14.6+repack-2), libhdf5-dev (= 1.14.6+repack-2), libhdf5-fortran-310 (= 1.14.6+repack-2), libhdf5-hl-310 (= 1.14.6+repack-2), libhdf5-hl-cpp-310 (= 1.14.6+repack-2), libhdf5-hl-fortran-310 (= 1.14.6+repack-2), libhogweed6t64 (= 3.10.2-1), libhwasan0 (= 15.2.0-13), libice6 (= 2:1.1.1-1+b1), libicu76 (= 76.1-4+b1), libidn2-0 (= 2.3.8-4+b1), libidn2-dev (= 2.3.8-4+b1), libisl23 (= 0.27-1+b1), libitm1 (= 15.2.0-13), libjansson4 (= 2.14-2+b4), libjpeg-dev (= 1:2.1.5-4), libjpeg62-turbo (= 1:2.1.5-4), libjpeg62-turbo-dev (= 1:2.1.5-4), libjsoncpp26 (= 1.9.6-5), libk5crypto3 (= 1.22.1-2), libkadm5clnt-mit12 (= 1.22.1-2), libkadm5srv-mit12 (= 1.22.1-2), libkdb5-10t64 (= 1.22.1-2), libkeyutils1 (= 1.6.3-6+b1), libkpathsea6 (= 2025.20250727.75242+ds-5), libkrb5-3 (= 1.22.1-2), libkrb5-dev (= 1.22.1-2), libkrb5support0 (= 1.22.1-2), libldap-dev (= 2.6.10+dfsg-1+b2), libldap2 (= 2.6.10+dfsg-1+b2), liblsan0 (= 15.2.0-13), liblz4-1 (= 1.10.0-6), liblzma-dev (= 5.8.2-2), liblzma5 (= 5.8.2-2), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libminc-dev (= 2.4.07-2), libminc2-5.3.0t64 (= 2.4.07-2), libmount1 (= 2.41.3-4), libmpc3 (= 1.3.1-2+b1), libmpfi0 (= 1.5.4+ds-4+b1), libmpfr6 (= 4.2.2-2+b1), libncursesw6 (= 6.6+20251231-1), libnetcdf-dev (= 1:4.9.3-1+b2), libnetcdf22 (= 1:4.9.3-1+b2), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.68.0-1), libnghttp2-dev (= 1.68.0-1), libnghttp3-9 (= 1.12.0-1), libnghttp3-dev (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-gnutls-dev (= 1.16.0-1), libngtcp2-crypto-gnutls8 (= 1.16.0-1), libngtcp2-crypto-ossl0 (= 1.16.0-1), libngtcp2-dev (= 1.16.0-1), libnifti2-2 (= 3.0.1-9.1+b2), libnifti2-dev (= 3.0.1-9.1+b2), libnifticdf-dev (= 3.0.1-9.1+b2), libnifticdf2 (= 3.0.1-9.1+b2), libniftiio-dev (= 3.0.1-9.1+b2), libniftiio2t64 (= 3.0.1-9.1+b2), libp11-kit-dev (= 0.26.2-2), libp11-kit0 (= 0.26.2-2), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpaper-utils (= 2.2.5-0.3+b3), libpaper2 (= 2.2.5-0.3+b3), libpcre2-8-0 (= 10.46-1+b1), libperl5.42 (= 5.42.0-3), libpipeline1 (= 1.5.8-2), libpixman-1-0 (= 0.46.4-1+b1), libpkgconf7 (= 2.5.1-4), libpng16-16t64 (= 1.6.55-1), libpotrace0 (= 1.16-2+b3), libproc2-0 (= 2:4.0.4-9+b1), libpsl-dev (= 0.21.2-1.1+b2), libpsl5t64 (= 0.21.2-1.1+b2), libptexenc1 (= 2025.20250727.75242+ds-5), libquadmath0 (= 15.2.0-13), librhash1 (= 1.4.6-1.1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-3+b1), librtmp1 (= 2.4+20151223.gitfa8646d.1-3+b1), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libsframe3 (= 2.46-2), libsm6 (= 2:1.2.6-1+b1), libsmartcols1 (= 2.41.3-4), libssh2-1-dev (= 1.11.1-1+b1), libssh2-1t64 (= 1.11.1-1+b1), libssl-dev (= 3.5.5-1), libssl3t64 (= 3.5.5-1), libstdc++-15-dev (= 15.2.0-13), libstdc++6 (= 15.2.0-13), libsynctex2 (= 2025.20250727.75242+ds-5), libsystemd0 (= 259.1-1), libsz2 (= 1.1.5-1), libtasn1-6 (= 4.21.0-2), libtasn1-6-dev (= 4.21.0-2), libteckit0 (= 2.5.13+ds-1), libtexlua53-5 (= 2025.20250727.75242+ds-5), libtext-charwidth-perl (= 0.04-11+b6), libtext-wrapi18n-perl (= 0.06-10), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-9), libtsan2 (= 15.2.0-13), libubsan1 (= 15.2.0-13), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 259.1-1), libunbound8 (= 1.24.2-1), libunistring5 (= 1.3-2+b1), libuuid1 (= 2.41.3-4), libuv1t64 (= 1.51.0-2+b1), libx11-6 (= 2:1.8.12-1+b1), libx11-data (= 2:1.8.12-1), libxau6 (= 1:1.0.11-1+b1), libxaw7 (= 2:1.0.16-1+b1), libxcb-render0 (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxdmcp6 (= 1:1.1.5-2), libxext6 (= 2:1.3.4-1+b4), libxi6 (= 2:1.8.2-2), libxml2-16 (= 2.15.1+dfsg-2+b1), libxml2-dev (= 2.15.1+dfsg-2+b1), libxmu6 (= 2:1.1.3-4), libxpm4 (= 1:3.5.17-1+b4), libxrender1 (= 1:0.9.12-1+b1), libxt6t64 (= 1:1.2.1-1.3+b1), libxxhash0 (= 0.8.3-2+b1), libznz-dev (= 3.0.1-9.1+b2), libznz3 (= 3.0.1-9.1+b2), libzstd-dev (= 1.5.7+dfsg-3+b1), libzstd1 (= 1.5.7+dfsg-3+b1), libzzip-0-13t64 (= 0.13.78+dfsg.1-0.2), linux-libc-dev (= 6.18.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260129-1), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), nettle-dev (= 3.10.2-1), openssl-provider-legacy (= 3.5.5-1), patch (= 2.8-2), perl (= 5.42.0-3), perl-base (= 5.42.0-3), perl-modules-5.42 (= 5.42.0-3), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), procps (= 2:4.0.4-9+b1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-6), t1utils (= 1.41-4), tar (= 1.35+dfsg-4), tex-common (= 6.20), texlive-base (= 2025.20260124-1), texlive-binaries (= 2025.20250727.75242+ds-5), texlive-latex-base (= 2025.20260124-1), ucf (= 3.0052), util-linux (= 2.41.3-4), x11-common (= 1:7.7+26), xdg-utils (= 1.2.1-2), xz-utils (= 5.8.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1771760690" +------------------------------------------------------------------------------+ | Package contents Sun, 22 Feb 2026 17:02:35 +0000 | +------------------------------------------------------------------------------+ minc-tools-dbgsym_2.3.00+dfsg-16_amd64.deb ------------------------------------------ new Debian package, version 2.0. size 713416 bytes: control archive=2272 bytes. 1873 bytes, 12 lines control 4009 bytes, 38 lines md5sums Package: minc-tools-dbgsym Source: minc-tools Version: 2.3.00+dfsg-16 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1293 Depends: minc-tools (= 2.3.00+dfsg-16) Section: debug Priority: optional Description: debug symbols for minc-tools Build-Ids: 00924aa32e45409ad39f7606c4bd5c57952e3d56 04c09283c609a6ad91b93c1cf1573010e5c83fc9 04da173185905d91afd070dde73a52f13276cef5 0591b7d059a336d0100422962e72b312ef764c46 066880199af3a0435611ad80ea9e45616103f1b6 1240af8f1471e4f10f64559aee383916cb70d900 14ed8a747bbfc9163f22186f7a2444758a7f4b29 1e43128c42710b29bb854d41f168e90c468a8ed5 1e99274eb57085ec3fbacea68fcb9eeac0a0d271 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Packaging Team Installed-Size: 1495 Depends: libc6 (>= 2.34), libminc2-5.3.0t64 (>= 2.4.07), libnetcdf22 (>= 3.6.1), libniftiio2t64 (>= 3.0.1), netcdf-bin, libgetopt-tabular-perl, libtext-format-perl, imagemagick, sensible-utils Section: science Priority: optional Homepage: https://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage Description: MNI medical image format tools This package contains tools to manipulate MINC files. . The Minc file format is a highly flexible medical image file format built on top of the NetCDF generalized data format. The format is simple, self-describing, extensible, portable and N-dimensional, with programming interfaces for both low-level data access and high-level volume manipulation. On top of the libraries is a suite of generic image-file manipulation tools. The format, libraries and tools are designed for use in a medical-imaging research environment: they are simple and powerful and make no attempt to provide a pretty interface to users. drwxr-xr-x root/root 0 2026-02-22 11:44 ./ drwxr-xr-x root/root 0 2026-02-22 11:44 ./usr/ drwxr-xr-x root/root 0 2026-02-22 11:44 ./usr/bin/ -rwxr-xr-x root/root 152296 2026-02-22 11:44 ./usr/bin/dcm2mnc -rwxr-xr-x root/root 48752 2026-02-22 11:44 ./usr/bin/ecattominc -rwxr-xr-x root/root 14632 2026-02-22 11:44 ./usr/bin/invert_raw_image -rwxr-xr-x root/root 14872 2026-02-22 11:44 ./usr/bin/minc_modify_header -rwxr-xr-x root/root 28544 2026-02-22 11:44 ./usr/bin/mincaverage -rwxr-xr-x root/root 23296 2026-02-22 11:44 ./usr/bin/mincblob -rwxr-xr-x root/root 66000 2026-02-22 11:44 ./usr/bin/minccalc -rwxr-xr-x root/root 23656 2026-02-22 11:44 ./usr/bin/minccmp -rwxr-xr-x root/root 36464 2026-02-22 11:44 ./usr/bin/mincconcat -rwxr-xr-x root/root 14832 2026-02-22 11:44 ./usr/bin/mincconvert -rwxr-xr-x 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Package-Time: 61 Source-Version: 2.3.00+dfsg-16 Space: 28204 Status: successful Version: 2.3.00+dfsg-16 -------------------------------------------------------------------------------- Finished at 2026-02-22T17:02:34Z Build needed 00:01:01, 28204k disk space