sbuild (Debian sbuild) 0.91.5 (17 December 2025) on carme.larted.org.uk +==============================================================================+ | barrnap 1.0.0-1 (amd64) Sat, 21 Feb 2026 21:01:35 +0000 | +==============================================================================+ Package: barrnap Version: 1.0.0-1 Source Version: 1.0.0-1 Distribution: perl-5.42-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sat, 21 Feb 2026 21:01:36 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup barrnap_1.0.0-1 perl-5.42-throwaway amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup barrnap_1.0.0-1 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sat, 21 Feb 2026 21:01:36 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Get:2 http://deb.debian.org/debian unstable InRelease [187 kB] Get:3 http://deb.debian.org/debian sid InRelease [187 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-02-21-2015.26-F-2026-02-21-2015.26.pdiff [20.3 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-02-21-2015.26-F-2026-02-21-2015.26.pdiff [20.3 kB] Get:7 http://deb.debian.org/debian sid/main Sources T-2026-02-21-2015.26-F-2026-02-21-2015.26.pdiff [29.3 kB] Get:7 http://deb.debian.org/debian sid/main Sources T-2026-02-21-2015.26-F-2026-02-21-2015.26.pdiff [29.3 kB] Fetched 551 kB in 5s (101 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 liblastlog2-2 libmount1 libsmartcols1 libuuid1 util-linux 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1860 kB of archives. After this operation, 17.4 kB disk space will be freed. Get:1 http://deb.debian.org/debian unstable/main amd64 libsmartcols1 amd64 2.41.3-4 [145 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 libuuid1 amd64 2.41.3-4 [39.1 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libblkid1 amd64 2.41.3-4 [174 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 2.41.3-4 [212 kB] Ign:4 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 2.41.3-4 Get:5 http://deb.debian.org/debian unstable/main amd64 util-linux amd64 2.41.3-4 [1166 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 bsdutils amd64 1:2.41.3-4 [94.2 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 liblastlog2-2 amd64 2.41.3-4 [30.0 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 2.41.3-4 [212 kB] Fetched 1848 kB in 9s (203 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23422 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.3-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.3-4) over (2.41.3-3) ... Setting up libsmartcols1:amd64 (2.41.3-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23422 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.3-4_amd64.deb ... Unpacking libblkid1:amd64 (2.41.3-4) over (2.41.3-3) ... Setting up libblkid1:amd64 (2.41.3-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23422 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.3-4_amd64.deb ... Unpacking libmount1:amd64 (2.41.3-4) over (2.41.3-3) ... Setting up libmount1:amd64 (2.41.3-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23422 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.3-4_amd64.deb ... Unpacking util-linux (2.41.3-4) over (2.41.3-3) ... Setting up util-linux (2.41.3-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23422 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.3-4_amd64.deb ... Unpacking bsdutils (1:2.41.3-4) over (1:2.41.3-3) ... Preparing to unpack .../liblastlog2-2_2.41.3-4_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.3-4) over (2.41.3-3) ... Setting up bsdutils (1:2.41.3-4) ... Setting up liblastlog2-2:amd64 (2.41.3-4) ... Processing triggers for libc-bin (2.42-13) ... +------------------------------------------------------------------------------+ | Fetch source files Sat, 21 Feb 2026 21:01:55 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/barrnap_1.0.0-1.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 21 Feb 2026 21:01:55 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, hmmer, lua5.1, bedtools, build-essential Filtered Build-Depends: debhelper-compat (= 13), help2man, hmmer, lua5.1, bedtools, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/barrnap-ukJP0a/resolver-ToOrKs/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/barrnap-ukJP0a/resolver-ToOrKs/apt_archive ./ InRelease Get:2 copy:/build/barrnap-ukJP0a/resolver-ToOrKs/apt_archive ./ Release [609 B] Ign:3 copy:/build/barrnap-ukJP0a/resolver-ToOrKs/apt_archive ./ Release.gpg Get:4 copy:/build/barrnap-ukJP0a/resolver-ToOrKs/apt_archive ./ Sources [635 B] Get:5 copy:/build/barrnap-ukJP0a/resolver-ToOrKs/apt_archive ./ Packages [674 B] Fetched 1918 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bedtools bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man hmmer intltool-debian libarchive-zip-perl libdebhelper-perl libdivsufsort3 libelf1t64 libfile-stripnondeterminism-perl liblocale-gettext-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 lua5.1 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff hmmer-doc libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bedtools bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man hmmer intltool-debian libarchive-zip-perl libdebhelper-perl libdivsufsort3 libelf1t64 libfile-stripnondeterminism-perl liblocale-gettext-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 lua5.1 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 12.9 MB/12.9 MB of archives. After this operation, 50.5 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 liblocale-gettext-perl amd64 1.07-8+b1 [15.4 kB] Get:2 copy:/build/barrnap-ukJP0a/resolver-ToOrKs/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [876 B] Get:3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b1 [338 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b1 [110 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5+b1 [43.8 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b1 [68.8 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.3-4 [98.9 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 bedtools amd64 2.31.1+dfsg-3 [698 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.30 [92.7 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-9 [540 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21+nmu1 [11.7 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:25 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.30 [942 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libdivsufsort3 amd64 2.0.1-7 [45.8 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 hmmer amd64 3.4+dfsg-3 [1079 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 lua5.1 amd64 5.1.5-12 [104 kB] Preconfiguring packages ... Fetched 12.9 MB in 5s (2673 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 23422 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-8+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-8+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5+b1_amd64.deb ... Unpacking file (1:5.46-5+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.2-1_amd64.deb ... Unpacking gettext-base (0.23.2-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-2+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-10_amd64.deb ... Unpacking groff-base (1.23.0-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41.3-4_amd64.deb ... Unpacking bsdextrautils (2.41.3-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.18.1-3_all.deb ... Unpacking automake (1:1.18.1-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.2-1_all.deb ... Unpacking autopoint (0.23.2-1) ... Selecting previously unselected package bedtools. Preparing to unpack .../16-bedtools_2.31.1+dfsg-3_amd64.deb ... Unpacking bedtools (2.31.1+dfsg-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.30_all.deb ... Unpacking libdebhelper-perl (13.30) ... Selecting previously unselected package libtool. 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Setting up libdebhelper-perl (13.30) ... Setting up libmagic1t64:amd64 (1:5.46-5+b1) ... Setting up gettext-base (0.23.2-1) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.46-5+b1) ... Setting up lua5.1 (5.1.5-12) ... update-alternatives: using /usr/bin/lua5.1 to provide /usr/bin/lua (lua-interpreter) in auto mode update-alternatives: using /usr/bin/luac5.1 to provide /usr/bin/luac (lua-compiler) in auto mode Setting up libelf1t64:amd64 (0.194-1) ... Setting up autotools-dev (20240727.1) ... Setting up autopoint (0.23.2-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b1) ... Setting up libdivsufsort3:amd64 (2.0.1-7) ... Setting up bedtools (2.31.1+dfsg-3) ... Setting up liblocale-gettext-perl (1.07-8+b1) ... Setting up automake (1:1.18.1-3) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.2-1) ... Setting up libtool (2.5.4-9) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (21+nmu1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-10) ... Setting up hmmer (3.4+dfsg-3) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.30) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-13) ... +------------------------------------------------------------------------------+ | Check architectures Sat, 21 Feb 2026 21:02:04 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Sat, 21 Feb 2026 21:02:04 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.18.5+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.18.5-1 (2026-01-16) amd64 (x86_64) Toolchain package versions: binutils_2.46-2 dpkg-dev_1.23.5 g++-14_14.3.0-12 g++-15_15.2.0-13 gcc-14_14.3.0-12 gcc-15_15.2.0-13 libc6-dev_2.42-13 libstdc++-14-dev_14.3.0-12 libstdc++-15-dev_15.2.0-13 libstdc++6_15.2.0-13 linux-libc-dev_6.18.12-1 Package versions: adduser_3.154 apt_3.1.16 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 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patch_2.8-2 perl_5.42.0-3 perl-base_5.42.0-3 perl-modules-5.40_5.40.1-7 perl-modules-5.42_5.42.0-3 pinentry-curses_1.3.2-3 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-5 sysvinit-utils_3.15-6 tar_1.35+dfsg-4 util-linux_2.41.3-4 xz-utils_5.8.2-2 zlib1g_1:1.3.dfsg+really1.3.1-3 +------------------------------------------------------------------------------+ | Build Sat, 21 Feb 2026 21:02:04 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: barrnap Binary: barrnap Architecture: all Version: 1.0.0-1 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/barrnap Vcs-Git: https://salsa.debian.org/med-team/barrnap.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, hmmer, lua5.1, bedtools Package-List: barrnap deb science optional arch=all Checksums-Sha1: b669c8a1e92ff04eb32a14eb7c5af4bd0aedc87d 7436136 barrnap_1.0.0.orig.tar.xz 81755928b40f81815a3c1cfb5be09abb228603cb 4972 barrnap_1.0.0-1.debian.tar.xz Checksums-Sha256: dd6b343093f1d6b5cc2392edc2060eeb0d082a9c46f6e3443047066992edcb44 7436136 barrnap_1.0.0.orig.tar.xz 88b02b735527e977a08409d85e15699258aaf7f373f2efeff48debdbae461984 4972 barrnap_1.0.0-1.debian.tar.xz Files: d6f9c2bb75ffcbea2d21aa081386f381 7436136 barrnap_1.0.0.orig.tar.xz 9e66779e0126b1dafa7d3fc3c5b815b7 4972 barrnap_1.0.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAmmZxqEACgkQ6NN64vCf SHJXHQ/9ELA2If2JKgkSg/OoBjjHTC0bWzpXMZKL9WGGUnPDEMmXUSZyg9WEUUew oE8AwOzw54nyjofrPMkyhA764qsgSROKcKp4/9tXcGxFARSQlIQ6qoKbSwGzj8nC 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/usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting barrnap in /build/barrnap-ukJP0a/barrnap-1.0.0 dpkg-source: info: unpacking barrnap_1.0.0.orig.tar.xz dpkg-source: info: unpacking barrnap_1.0.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_dirs clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sat, 21 Feb 2026 21:02:05 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network barrnap_1.0.0-1 perl-5.42-throwaway amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network barrnap_1.0.0-1 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/barrnap-ukJP0a/barrnap-1.0.0 SCHROOT_ALIAS_NAME=perl-5.42-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-a5ed3ed7-07aa-4509-a5d2-e7bed1e7460f SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package barrnap dpkg-buildpackage: info: source version 1.0.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/barrnap-ukJP0a/barrnap-1.0.0' rm -rf debian/man make[1]: Leaving directory '/build/barrnap-ukJP0a/barrnap-1.0.0' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building barrnap using existing ./barrnap_1.0.0.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building barrnap in barrnap_1.0.0-1.debian.tar.xz dpkg-source: info: building barrnap in barrnap_1.0.0-1.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/barrnap-ukJP0a/barrnap-1.0.0' mkdir -p debian/man help2man --no-discard-stderr --no-info --name="Predict location of ribosomal RNA genes in genomes" bin/barrnap > debian/man/barrnap.1 make[1]: Leaving directory '/build/barrnap-ukJP0a/barrnap-1.0.0' dh_auto_test make -j2 test make[1]: Entering directory '/build/barrnap-ukJP0a/barrnap-1.0.0' ./bin/barrnap examples/small.fna [barrnap] This is barrnap 0.9 [barrnap] Written by Torsten Seemann [barrnap] Obtained from https://github.com/tseemann/barrnap [barrnap] Detected operating system: linux [barrnap] Adding /build/barrnap-ukJP0a/barrnap-1.0.0/bin/../binaries/linux to end of PATH [barrnap] Checking for dependencies: [barrnap] Found nhmmer - /usr/bin/nhmmer [barrnap] Found bedtools - /usr/bin/bedtools [barrnap] Will use 1 threads [barrnap] Setting evalue cutoff to 1e-06 [barrnap] Will tag genes < 0.8 of expected length. [barrnap] Will reject genes < 0.25 of expected length. [barrnap] Using database: /build/barrnap-ukJP0a/barrnap-1.0.0/bin/../db/bac.hmm [barrnap] Scanning examples/small.fna for bac rRNA genes... please wait [barrnap] Command: nhmmer --cpu 1 -E 1e-06 --w_length 3878 -o /dev/null --tblout /dev/stdout '/build/barrnap-ukJP0a/barrnap-1.0.0/bin/../db/bac.hmm' 'examples/small.fna' [barrnap] Found: 16S_rRNA P.marinus L=1480/1585 353314..354793 + 16S ribosomal RNA [barrnap] Found: 23S_rRNA P.marinus L=2871/3232 355464..358334 + 23S ribosomal RNA [barrnap] Found: 5S_rRNA P.marinus L=104/119 358433..358536 + 5S ribosomal RNA [barrnap] Found 3 ribosomal RNA features. [barrnap] Sorting features and outputting GFF3... [barrnap] Done. ##gff-version 3 P.marinus barrnap:0.9 rRNA 353314 354793 0 + . Name=16S_rRNA;product=16S ribosomal RNA P.marinus barrnap:0.9 rRNA 355464 358334 0 + . Name=23S_rRNA;product=23S ribosomal RNA P.marinus barrnap:0.9 rRNA 358433 358536 9.6e-07 + . Name=5S_rRNA;product=5S ribosomal RNA make[1]: Leaving directory '/build/barrnap-ukJP0a/barrnap-1.0.0' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/barrnap-ukJP0a/barrnap-1.0.0' # pass make[1]: Leaving directory '/build/barrnap-ukJP0a/barrnap-1.0.0' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package barrnap: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'barrnap' in '../barrnap_1.0.0-1_all.deb'. dpkg-genbuildinfo -O../barrnap_1.0.0-1_amd64.buildinfo dpkg-genchanges -O../barrnap_1.0.0-1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2026-02-21T21:02:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 21 Feb 2026 21:02:16 +0000 | +------------------------------------------------------------------------------+ barrnap_1.0.0-1_amd64.changes: ------------------------------ Format: 1.8 Date: Sat, 21 Feb 2026 15:02:38 +0100 Source: barrnap Binary: barrnap Architecture: source all Version: 1.0.0-1 Distribution: perl-5.42-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: barrnap - rapid ribosomal RNA prediction Changes: barrnap (1.0.0-1) unstable; urgency=medium . * New upstream release. * Drop patches replacing databases: we now have free ones. * Add manual page autogeneration. * Remove any Files-Excluded directives from d/copyright. * Bump Standards-Version. 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d6f9c2bb75ffcbea2d21aa081386f381 7436136 science optional barrnap_1.0.0.orig.tar.xz 9e66779e0126b1dafa7d3fc3c5b815b7 4972 science optional barrnap_1.0.0-1.debian.tar.xz 2680f258ac002b35b5265150eb779610 503956 science optional barrnap_1.0.0-1_all.deb c606c510f49727d9ed6edfc69d406629 5216 science optional barrnap_1.0.0-1_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Sat, 21 Feb 2026 21:02:16 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: barrnap Binary: barrnap Architecture: all source Version: 1.0.0-1 Checksums-Md5: e4f7a0277d2f336f438dbf24ff3609b3 1102 barrnap_1.0.0-1.dsc 2680f258ac002b35b5265150eb779610 503956 barrnap_1.0.0-1_all.deb Checksums-Sha1: 1b67daf2d20f0b91c03444fbd5a8f0e1bdcd0c38 1102 barrnap_1.0.0-1.dsc 8a8598738c25d198478463458790f87bb1a5917c 503956 barrnap_1.0.0-1_all.deb Checksums-Sha256: cdd784375da29478039c64229b6dd96b01e65d2fab978857f6c2b16dec1702b4 1102 barrnap_1.0.0-1.dsc 2028b04988481eb225604dac5b6b5943f5fed42018d04727e98b49bec9ee11d8 503956 barrnap_1.0.0-1_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 21 Feb 2026 21:02:15 +0000 Build-Path: /build/barrnap-ukJP0a/barrnap-1.0.0 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-2), bedtools (= 2.31.1+dfsg-3), binutils (= 2.46-2), binutils-common (= 2.46-2), binutils-x86-64-linux-gnu (= 2.46-2), bsdextrautils (= 2.41.3-4), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), coreutils (= 9.7-3), cpp (= 4:15.2.0-5), cpp-14 (= 14.3.0-12), cpp-14-x86-64-linux-gnu (= 14.3.0-12), cpp-15 (= 15.2.0-13), cpp-15-x86-64-linux-gnu (= 15.2.0-13), cpp-x86-64-linux-gnu (= 4:15.2.0-5), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 13.30), debianutils (= 5.23.2), dh-autoreconf (= 21+nmu1), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.5), dpkg-dev (= 1.23.5), dwz (= 0.16-2), file (= 1:5.46-5+b1), findutils (= 4.10.0-3), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-13), g++-15-x86-64-linux-gnu (= 15.2.0-13), g++-x86-64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-14 (= 14.3.0-12), gcc-14-base (= 14.3.0-12), gcc-14-x86-64-linux-gnu (= 14.3.0-12), gcc-15 (= 15.2.0-13), gcc-15-base (= 15.2.0-13), gcc-15-x86-64-linux-gnu (= 15.2.0-13), gcc-x86-64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), help2man (= 1.49.3), hmmer (= 3.4+dfsg-3), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-13), libatomic1 (= 15.2.0-13), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-2), libblkid1 (= 2.41.3-4), libbz2-1.0 (= 1.0.8-6+b1), libc-bin (= 2.42-13), libc-dev-bin (= 2.42-13), libc-gconv-modules-extra (= 2.42-13), libc6 (= 2.42-13), libc6-dev (= 2.42-13), libcap-ng0 (= 0.9.1-1), libcap2 (= 1:2.75-10+b5), libcc1-0 (= 15.2.0-13), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.46-2), libctf0 (= 2.46-2), libdb5.3t64 (= 5.3.28+dfsg2-11), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.30), libdivsufsort3 (= 2.0.1-7), libdpkg-perl (= 1.23.5), libelf1t64 (= 0.194-1), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-14-dev (= 14.3.0-12), libgcc-15-dev (= 15.2.0-13), libgcc-s1 (= 15.2.0-13), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgomp1 (= 15.2.0-13), libgprofng0 (= 2.46-2), libhwasan0 (= 15.2.0-13), libisl23 (= 0.27-1+b1), libitm1 (= 15.2.0-13), libjansson4 (= 2.14-2+b4), liblocale-gettext-perl (= 1.07-8+b1), liblsan0 (= 15.2.0-13), liblzma5 (= 5.8.2-2), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmount1 (= 2.41.3-4), libmpc3 (= 1.3.1-2+b1), libmpfr6 (= 4.2.2-2+b1), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpcre2-8-0 (= 10.46-1+b1), libperl5.42 (= 5.42.0-3), libpipeline1 (= 1.5.8-2), libquadmath0 (= 15.2.0-13), libreadline8t64 (= 8.3-4), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libsframe3 (= 2.46-2), libsmartcols1 (= 2.41.3-4), libssl3t64 (= 3.5.5-1), libstdc++-15-dev (= 15.2.0-13), libstdc++6 (= 15.2.0-13), libsystemd0 (= 259.1-1), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-9), libtsan2 (= 15.2.0-13), libubsan1 (= 15.2.0-13), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 259.1-1), libunistring5 (= 1.3-2+b1), libuuid1 (= 2.41.3-4), libxml2-16 (= 2.15.1+dfsg-2+b1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.18.12-1), lua5.1 (= 5.1.5-12), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260129-1), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), openssl-provider-legacy (= 3.5.5-1), patch (= 2.8-2), perl (= 5.42.0-3), perl-base (= 5.42.0-3), perl-modules-5.42 (= 5.42.0-3), po-debconf (= 1.0.22), readline-common (= 8.3-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-6), tar (= 1.35+dfsg-4), util-linux (= 2.41.3-4), xz-utils (= 5.8.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1771682558" +------------------------------------------------------------------------------+ | Package contents Sat, 21 Feb 2026 21:02:16 +0000 | +------------------------------------------------------------------------------+ barrnap_1.0.0-1_all.deb ----------------------- new Debian package, version 2.0. size 503956 bytes: control archive=1048 bytes. 810 bytes, 18 lines control 580 bytes, 9 lines md5sums Package: barrnap Version: 1.0.0-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 3101 Depends: perl:any, hmmer, bedtools Section: science Priority: optional Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml Description: rapid ribosomal RNA prediction Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). . It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs. drwxr-xr-x root/root 0 2026-02-21 14:02 ./ drwxr-xr-x root/root 0 2026-02-21 14:02 ./usr/ drwxr-xr-x root/root 0 2026-02-21 14:02 ./usr/bin/ -rwxr-xr-x root/root 9286 2026-02-21 14:02 ./usr/bin/barrnap drwxr-xr-x root/root 0 2026-02-21 14:02 ./usr/share/ drwxr-xr-x root/root 0 2026-02-21 14:02 ./usr/share/barrnap/ drwxr-xr-x root/root 0 2025-12-15 08:56 ./usr/share/barrnap/db/ -rw-r--r-- root/root 839378 2025-12-15 08:56 ./usr/share/barrnap/db/arc.hmm -rw-r--r-- root/root 808656 2025-12-15 08:56 ./usr/share/barrnap/db/bac.hmm -rw-r--r-- root/root 1038507 2025-12-15 08:56 ./usr/share/barrnap/db/euk.hmm -rw-r--r-- root/root 456264 2025-12-15 08:56 ./usr/share/barrnap/db/mito.hmm drwxr-xr-x root/root 0 2026-02-21 14:02 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-02-21 14:02 ./usr/share/doc/barrnap/ -rw-r--r-- root/root 2829 2025-12-15 08:56 ./usr/share/doc/barrnap/README.md.gz -rw-r--r-- root/root 1042 2026-02-21 14:02 ./usr/share/doc/barrnap/changelog.Debian.gz -rw-r--r-- root/root 2357 2026-02-21 14:02 ./usr/share/doc/barrnap/copyright drwxr-xr-x root/root 0 2026-02-21 14:02 ./usr/share/man/ drwxr-xr-x root/root 0 2026-02-21 14:02 ./usr/share/man/man1/ -rw-r--r-- root/root 613 2026-02-21 14:02 ./usr/share/man/man1/barrnap.1.gz +------------------------------------------------------------------------------+ | Post Build Sat, 21 Feb 2026 21:02:16 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 21 Feb 2026 21:02:16 +0000 | +------------------------------------------------------------------------------+ Purging /build/barrnap-ukJP0a Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 21 Feb 2026 21:02:17 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 54652 Build-Time: 11 Distribution: perl-5.42-throwaway Host Architecture: amd64 Install-Time: 9 Job: /srv/debomatic/incoming/barrnap_1.0.0-1.dsc Machine Architecture: amd64 Package: barrnap Package-Time: 41 Source-Version: 1.0.0-1 Space: 54652 Status: successful Version: 1.0.0-1 -------------------------------------------------------------------------------- Finished at 2026-02-21T21:02:16Z Build needed 00:00:41, 54652k disk space