sbuild (Debian sbuild) 0.91.5 (17 December 2025) on carme.larted.org.uk +==============================================================================+ | any2fasta 0.8.1-1 (amd64) Sat, 11 Apr 2026 04:01:42 +0000 | +==============================================================================+ Package: any2fasta Version: 0.8.1-1 Source Version: 0.8.1-1 Distribution: perl-5.42-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sat, 11 Apr 2026 04:01:42 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup any2fasta_0.8.1-1 perl-5.42-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup any2fasta_0.8.1-1 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sat, 11 Apr 2026 04:01:42 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://deb.debian.org/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sat, 11 Apr 2026 04:01:44 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/any2fasta_0.8.1-1.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 11 Apr 2026 04:01:44 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential Filtered Build-Depends: debhelper-compat (= 13), build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/any2fasta-G6M14p/resolver-Im5JUS/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/any2fasta-G6M14p/resolver-Im5JUS/apt_archive ./ InRelease Get:2 copy:/build/any2fasta-G6M14p/resolver-Im5JUS/apt_archive ./ Release [609 B] Ign:3 copy:/build/any2fasta-G6M14p/resolver-Im5JUS/apt_archive ./ Release.gpg Get:4 copy:/build/any2fasta-G6M14p/resolver-Im5JUS/apt_archive ./ Sources [600 B] Get:5 copy:/build/any2fasta-G6M14p/resolver-Im5JUS/apt_archive ./ Packages [639 B] Fetched 1848 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 10.7 MB of archives. After this operation, 40.6 MB of additional disk space will be used. Get:1 copy:/build/any2fasta-G6M14p/resolver-Im5JUS/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [856 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b1 [338 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b1 [110 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5+b1 [43.8 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-2 [242 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42-2 [99.0 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2+b1 [49.5 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-6 [494 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-4 [877 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-2 [770 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.31 [75.7 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-10 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 22 [12.2 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-4 [183 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-4 [108 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.2+dfsg-0.1 [641 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-2 [1684 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.31 [932 kB] Preconfiguring packages ... Fetched 10.7 MB in 0s (126 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 23448 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5+b1_amd64.deb ... Unpacking file (1:5.46-5+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.2-2_amd64.deb ... Unpacking gettext-base (0.23.2-2) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up libxml2-16:amd64 (2.15.2+dfsg-0.1) ... Setting up libdebhelper-perl (13.31) ... Setting up libmagic1t64:amd64 (1:5.46-5+b1) ... Setting up gettext-base (0.23.2-2) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.46-5+b1) ... Setting up libelf1t64:amd64 (0.194-4) ... Setting up autotools-dev (20240727.1) ... Setting up autopoint (0.23.2-2) ... Setting up autoconf (2.72-6) ... Setting up dwz (0.16-4) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b1) ... Setting up automake (1:1.18.1-4) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.2-2) ... Setting up libtool (2.5.4-10) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (22) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-10) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.31) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-14) ... +------------------------------------------------------------------------------+ | Check architectures Sat, 11 Apr 2026 04:01:49 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Sat, 11 Apr 2026 04:01:49 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.18.5+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.18.5-1 (2026-01-16) amd64 (x86_64) Toolchain package versions: binutils_2.46-3 dpkg-dev_1.23.7 g++-14_14.3.0-14 g++-15_15.2.0-16 gcc-14_14.3.0-14 gcc-15_15.2.0-16 libc6-dev_2.42-14 libstdc++-14-dev_14.3.0-14 libstdc++-15-dev_15.2.0-16 libstdc++6_16-20260322-1 linux-libc-dev_6.19.11-1 Package versions: adduser_3.155 apt_3.2.0 autoconf_2.72-6 automake_1:1.18.1-4 autopoint_0.23.2-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-2 binutils_2.46-3 binutils-common_2.46-3 binutils-gold_2.44-3 binutils-gold-x86-64-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.46-3 bsdextrautils_2.42-2 bsdutils_1:2.42-2 build-essential_12.12 bzip2_1.0.8-6+b1 coreutils_9.10-1 cpp_4:15.2.0-5 cpp-14_14.3.0-14 cpp-14-x86-64-linux-gnu_14.3.0-14 cpp-15_15.2.0-16 cpp-15-x86-64-linux-gnu_15.2.0-16 cpp-x86-64-linux-gnu_4:15.2.0-5 dash_0.5.12-12 debconf_1.5.92 debhelper_13.31 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dirmngr_2.4.9-4 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 eatmydata_131-2 file_1:5.46-5+b1 findutils_4.10.0-3 g++_4:15.2.0-5 g++-14_14.3.0-14 g++-14-x86-64-linux-gnu_14.3.0-14 g++-15_15.2.0-16 g++-15-x86-64-linux-gnu_15.2.0-16 g++-x86-64-linux-gnu_4:15.2.0-5 gcc_4:15.2.0-5 gcc-14_14.3.0-14 gcc-14-base_14.3.0-14 gcc-14-x86-64-linux-gnu_14.3.0-14 gcc-15_15.2.0-16 gcc-15-base_15.2.0-16 gcc-15-x86-64-linux-gnu_15.2.0-16 gcc-16-base_16-20260322-1 gcc-x86-64-linux-gnu_4:15.2.0-5 gettext_0.23.2-2 gettext-base_0.23.2-2 gnupg_2.4.9-4 gnupg-l10n_2.4.9-4 gpg_2.4.9-4 gpg-agent_2.4.9-4 gpgconf_2.4.9-4 gpgsm_2.4.9-4 grep_3.12-1 groff-base_1.23.0-10 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libapt-pkg7.0_3.2.0 libarchive-zip-perl_1.68-1 libasan8_16-20260322-1 libassuan9_3.0.2-2+b1 libatomic1_16-20260322-1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-3 libblkid1_2.42-2 libbsd0_0.12.2-2+b1 libbz2-1.0_1.0.8-6+b1 libc-bin_2.42-14 libc-dev-bin_2.42-14 libc-gconv-modules-extra_2.42-14 libc-l10n_2.42-14 libc6_2.42-14 libc6-dev_2.42-14 libcap-ng0_0.9.2-1 libcap2_1:2.78-1 libcc1-0_16-20260322-1 libcrypt-dev_1:4.5.1-1+b1 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46-3 libctf0_2.46-3 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.282+b2 libdebhelper-perl_13.31 libdpkg-perl_1.23.7 libeatmydata1_131-2+b2 libelf1t64_0.194-4 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-14-dev_14.3.0-14 libgcc-15-dev_15.2.0-16 libgcc-s1_16-20260322-1 libgcrypt20_1.12.1-2 libgdbm-compat4t64_1.26-1+b1 libgdbm6t64_1.26-1+b1 libgmp10_2:6.3.0+dfsg-5+b1 libgnutls30t64_3.8.12-3 libgomp1_16-20260322-1 libgpg-error0_1.59-4 libgprofng0_2.46-3 libhogweed6t64_3.10.2-1+b1 libhwasan0_16-20260322-1 libidn2-0_2.3.8-4+b1 libisl23_0.27-2 libitm1_16-20260322-1 libjansson4_2.14-2+b4 libksba8_1.6.8-2 liblastlog2-2_2.42-2 libldap2_2.6.10+dfsg-1+b2 liblsan0_16-20260322-1 liblz4-1_1.10.0-9 liblzma5_5.8.3-1 libmagic-mgc_1:5.46-5+b1 libmagic1t64_1:5.46-5+b1 libmd0_1.1.0-2+b2 libmount1_2.42-2 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20251231-1 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b1 libp11-kit0_0.26.2-2 libpam-modules_1.7.0-5+b1 libpam-modules-bin_1.7.0-5+b1 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5+b1 libpcre2-8-0_10.46-1+b1 libperl5.40_5.40.1-7+b1 libperl5.42_5.42.0-3 libpipeline1_1.5.8-2+b1 libquadmath0_16-20260322-1 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.0-2+b1 libselinux1_3.10-1 libsemanage-common_3.10-1 libsemanage2_3.10-1 libsepol2_3.10-1 libsframe2_2.45.50.20251209-1+b1 libsframe3_2.46-3 libsmartcols1_2.42-2 libsqlite3-0_3.46.1-9+b1 libssl3t64_3.6.1-3 libstdc++-14-dev_14.3.0-14 libstdc++-15-dev_15.2.0-16 libstdc++6_16-20260322-1 libsystemd0_260.1-1 libtasn1-6_4.21.0-2 libtinfo6_6.6+20251231-1 libtool_2.5.4-10 libtsan2_16-20260322-1 libubsan1_16-20260322-1 libuchardet0_0.0.8-2+b1 libudev1_260.1-1 libunistring5_1.4.2-1 libuuid1_2.42-2 libxml2-16_2.15.2+dfsg-0.1 libxxhash0_0.8.3-2+b1 libzstd1_1.5.7+dfsg-3+b1 linux-libc-dev_6.19.11-1 locales-all_2.42-14 login.defs_1:4.19.3-2 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 openssl-provider-legacy_3.6.1-3 passwd_1:4.19.3-2 patch_2.8-2 perl_5.42.0-3 perl-base_5.42.0-3 perl-modules-5.40_5.40.1-7 perl-modules-5.42_5.42.0-3 pinentry-curses_1.3.2-4 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-5 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 util-linux_2.42-2 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sat, 11 Apr 2026 04:01:49 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: any2fasta Binary: any2fasta, any2fasta-examples Architecture: all Version: 0.8.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/tseemann/any2fasta Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/any2fasta Vcs-Git: https://salsa.debian.org/med-team/any2fasta.git Testsuite: autopkgtest Testsuite-Triggers: bats 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skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting any2fasta in /build/any2fasta-G6M14p/any2fasta-0.8.1 dpkg-source: info: unpacking any2fasta_0.8.1.orig.tar.gz dpkg-source: info: unpacking any2fasta_0.8.1-1.debian.tar.xz clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sat, 11 Apr 2026 04:01:50 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network any2fasta_0.8.1-1 perl-5.42-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network any2fasta_0.8.1-1 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/any2fasta-G6M14p/any2fasta-0.8.1 SCHROOT_ALIAS_NAME=perl-5.42-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-aa078488-a314-4d09-8ebd-0eaeb5e53a2d SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package any2fasta dpkg-buildpackage: info: source version 0.8.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building any2fasta using existing ../any2fasta_0.8.1.orig.tar.gz dpkg-source: info: building any2fasta in ../any2fasta_0.8.1-1.debian.tar.xz dpkg-source: info: building any2fasta in ../any2fasta_0.8.1-1.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/any2fasta-G6M14p/any2fasta-0.8.1' dh_installexamples sed -i 's:$dir/../$name:/usr/bin/any2fasta:' debian/any2fasta-examples/usr/share/doc/any2fasta/examples/test.sh make[1]: Leaving directory '/build/any2fasta-G6M14p/any2fasta-0.8.1' dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/any2fasta-G6M14p/any2fasta-0.8.1' dh_compress -Xtest.fna -Xtest.fna.zst make[1]: Leaving directory '/build/any2fasta-G6M14p/any2fasta-0.8.1' dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'any2fasta' in '../any2fasta_0.8.1-1_all.deb'. dpkg-deb: building package 'any2fasta-examples' in '../any2fasta-examples_0.8.1-1_all.deb'. dpkg-genbuildinfo -O../any2fasta_0.8.1-1_amd64.buildinfo dpkg-genchanges -O../any2fasta_0.8.1-1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2026-04-11T04:02:08Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 11 Apr 2026 04:02:08 +0000 | +------------------------------------------------------------------------------+ any2fasta_0.8.1-1_amd64.changes: -------------------------------- Format: 1.8 Date: Fri, 10 Apr 2026 22:20:17 +0200 Source: any2fasta Binary: any2fasta any2fasta-examples Architecture: source all Version: 0.8.1-1 Distribution: perl-5.42-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: any2fasta - convert various sequence formats to FASTA any2fasta-examples - convert various sequence formats to FASTA (example data) Changes: any2fasta (0.8.1-1) unstable; urgency=medium . * d/watch: version=5 * New upstream version * Standards-Version: 4.7.4 (routine-update) * debputy lint --auto-fix (routine-update) Checksums-Sha1: 89a4b351aadcc32eec54bdb2f882c7a1c318f3e0 1163 any2fasta_0.8.1-1.dsc 0d3bdd90b1f1d2570d44d5ba31fc4703b63d80fa 6842579 any2fasta_0.8.1.orig.tar.gz b5f644be214540a3c02cc9ae7534e3d38a23e8b3 2876 any2fasta_0.8.1-1.debian.tar.xz 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a04a8ceb3f85abe5122aaed0efcc116ec9c1b35f 6626512 any2fasta-examples_0.8.1-1_all.deb bada72bc415ed869e9efe9050362e30570b2ec50 8272 any2fasta_0.8.1-1_all.deb Checksums-Sha256: b65f2fbcc4d62c4748bb2974559acd4691d315e53f1749065adf1a7350e7f31a 1163 any2fasta_0.8.1-1.dsc d2ecd2e8251975c193c9261e252bf41cca006e6ee98a6ec76e7d50e74f624d0e 6626512 any2fasta-examples_0.8.1-1_all.deb 70048a77e3bf47af71f4e02f8bcdc2a92534a8eaf3a041e6759c93c1c71a4ec5 8272 any2fasta_0.8.1-1_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 11 Apr 2026 04:02:07 +0000 Build-Path: /build/any2fasta-G6M14p/any2fasta-0.8.1 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-6), automake (= 1:1.18.1-4), autopoint (= 0.23.2-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-2), binutils (= 2.46-3), binutils-common (= 2.46-3), binutils-x86-64-linux-gnu (= 2.46-3), bsdextrautils (= 2.42-2), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), coreutils (= 9.10-1), cpp (= 4:15.2.0-5), cpp-14 (= 14.3.0-14), cpp-14-x86-64-linux-gnu (= 14.3.0-14), cpp-15 (= 15.2.0-16), cpp-15-x86-64-linux-gnu (= 15.2.0-16), cpp-x86-64-linux-gnu (= 4:15.2.0-5), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 13.31), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.46-5+b1), findutils (= 4.10.0-3), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-16), g++-15-x86-64-linux-gnu (= 15.2.0-16), g++-x86-64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-14 (= 14.3.0-14), gcc-14-base (= 14.3.0-14), gcc-14-x86-64-linux-gnu (= 14.3.0-14), gcc-15 (= 15.2.0-16), gcc-15-base (= 15.2.0-16), gcc-15-x86-64-linux-gnu (= 15.2.0-16), gcc-16-base (= 16-20260322-1), gcc-x86-64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-2), gettext-base (= 0.23.2-2), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 16-20260322-1), libatomic1 (= 16-20260322-1), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-3), libblkid1 (= 2.42-2), libbz2-1.0 (= 1.0.8-6+b1), libc-bin (= 2.42-14), libc-dev-bin (= 2.42-14), libc-gconv-modules-extra (= 2.42-14), libc6 (= 2.42-14), libc6-dev (= 2.42-14), libcap-ng0 (= 0.9.2-1), libcc1-0 (= 16-20260322-1), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46-3), libctf0 (= 2.46-3), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.31), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.194-4), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-14-dev (= 14.3.0-14), libgcc-15-dev (= 15.2.0-16), libgcc-s1 (= 16-20260322-1), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgomp1 (= 16-20260322-1), libgprofng0 (= 2.46-3), libhwasan0 (= 16-20260322-1), libisl23 (= 0.27-2), libitm1 (= 16-20260322-1), libjansson4 (= 2.14-2+b4), liblsan0 (= 16-20260322-1), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmount1 (= 2.42-2), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpcre2-8-0 (= 10.46-1+b1), libperl5.42 (= 5.42.0-3), libpipeline1 (= 1.5.8-2+b1), libquadmath0 (= 16-20260322-1), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.10-1), libsframe3 (= 2.46-3), libsmartcols1 (= 2.42-2), libssl3t64 (= 3.6.1-3), libstdc++-15-dev (= 15.2.0-16), libstdc++6 (= 16-20260322-1), libsystemd0 (= 260.1-1), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-10), libtsan2 (= 16-20260322-1), libubsan1 (= 16-20260322-1), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 260.1-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42-2), libxml2-16 (= 2.15.2+dfsg-0.1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.19.11-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), openssl-provider-legacy (= 3.6.1-3), patch (= 2.8-2), perl (= 5.42.0-3), perl-base (= 5.42.0-3), perl-modules-5.42 (= 5.42.0-3), po-debconf (= 1.0.22), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), util-linux (= 2.42-2), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1775852417" +------------------------------------------------------------------------------+ | Package contents Sat, 11 Apr 2026 04:02:08 +0000 | +------------------------------------------------------------------------------+ any2fasta-examples_0.8.1-1_all.deb ---------------------------------- new Debian package, version 2.0. size 6626512 bytes: control archive=1572 bytes. 1464 bytes, 37 lines control 1578 bytes, 20 lines md5sums Package: any2fasta-examples Source: any2fasta Version: 0.8.1-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 6553 Section: science Priority: optional Multi-Arch: foreign Homepage: https://github.com/tseemann/any2fasta Description: convert various sequence formats to FASTA (example data) Established tools like readseq and seqret from EMBOSS, both create mangled IDs containing | or . characters, and there is no way to fix this behaviour. This resultes in inconsitences between .gbk and .fna versions of files in pipelines. . This script uses only core Perl modules, has no other dependencies like Bioperl or Biopython, and runs very quickly. . It supports the following input formats: . 1. Genbank flat file, typically .gb, .gbk, .gbff (starts with LOCUS) 2. EMBL flat file, typically .embl, (starts with ID) 3. GFF with sequence, typically .gff, .gff3 (starts with ##gff) 4. FASTA DNA, typically .fasta, .fa, .fna, .ffn (starts with >) 5. FASTQ DNA, typically .fastq, .fq (starts with @) 6. CLUSTAL alignments, typically .clw, .clu (starts with CLUSTAL or MUSCLE) 7. STOCKHOLM alignments, typically .sth (starts with # STOCKHOLM) 8. GFA assembly graph, typically .gfa (starts with ^[A-Z]\t) . Files may be compressed with: . 1. gzip, typically .gz 2. bzip2, typically .bz2 3. zip, typically .zip . This package contains some example data for testing. drwxr-xr-x root/root 0 2026-04-10 20:20 ./ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/any2fasta-examples/ -rw-r--r-- root/root 278 2026-04-10 20:20 ./usr/share/doc/any2fasta-examples/README.test -rw-r--r-- root/root 347 2026-04-10 20:20 ./usr/share/doc/any2fasta-examples/changelog.Debian.gz -rw-r--r-- root/root 871 2026-04-10 20:20 ./usr/share/doc/any2fasta-examples/copyright -rw-r--r-- root/root 382 2026-04-10 20:20 ./usr/share/doc/any2fasta-examples/run-unit-test drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/any2fasta/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/any2fasta/examples/ -rw-r--r-- root/root 619 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.clw -rw-r--r-- root/root 3610 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.embl -rw-r--r-- root/root 60003 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.fna -rw-r--r-- root/root 17006 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.fna.bz2 -rw-r--r-- root/root 18265 2026-04-10 20:20 ./usr/share/doc/any2fasta/examples/test.fna.gz -rw-r--r-- root/root 16404 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.fna.xz -rw-r--r-- root/root 18413 2026-04-10 20:20 ./usr/share/doc/any2fasta/examples/test.fna.zip -rw-r--r-- root/root 19103 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.fna.zst -rw-r--r-- root/root 176153 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.fq.gz -rw-r--r-- root/root 3071491 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.gbk.gz -rw-r--r-- root/root 1570339 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.gfa.gz -rw-r--r-- root/root 1665250 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.gff.gz -rw-r--r-- root/root 1960 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.noseq.gff -rw-r--r-- root/root 46495 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.pdb.gz -rwxr-xr-x root/root 3539 2026-04-10 20:20 ./usr/share/doc/any2fasta/examples/test.sh -rw-r--r-- root/root 1106 2025-12-30 01:06 ./usr/share/doc/any2fasta/examples/test.sth any2fasta_0.8.1-1_all.deb ------------------------- new Debian package, version 2.0. size 8272 bytes: control archive=1140 bytes. 1381 bytes, 35 lines control 269 bytes, 4 lines md5sums Package: any2fasta Version: 0.8.1-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 23 Depends: perl:any Section: science Priority: optional Multi-Arch: foreign Homepage: https://github.com/tseemann/any2fasta Description: convert various sequence formats to FASTA Established tools like readseq and seqret from EMBOSS, both create mangled IDs containing | or . characters, and there is no way to fix this behaviour. This resultes in inconsitences between .gbk and .fna versions of files in pipelines. . This script uses only core Perl modules, has no other dependencies like Bioperl or Biopython, and runs very quickly. . It supports the following input formats: . 1. Genbank flat file, typically .gb, .gbk, .gbff (starts with LOCUS) 2. EMBL flat file, typically .embl, (starts with ID) 3. GFF with sequence, typically .gff, .gff3 (starts with ##gff) 4. FASTA DNA, typically .fasta, .fa, .fna, .ffn (starts with >) 5. FASTQ DNA, typically .fastq, .fq (starts with @) 6. CLUSTAL alignments, typically .clw, .clu (starts with CLUSTAL or MUSCLE) 7. STOCKHOLM alignments, typically .sth (starts with # STOCKHOLM) 8. GFA assembly graph, typically .gfa (starts with ^[A-Z]\t) . Files may be compressed with: . 1. gzip, typically .gz 2. bzip2, typically .bz2 3. zip, typically .zip drwxr-xr-x root/root 0 2026-04-10 20:20 ./ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/bin/ -rwxr-xr-x root/root 10828 2026-04-10 20:20 ./usr/bin/any2fasta drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-04-10 20:20 ./usr/share/doc/any2fasta/ -rw-r--r-- root/root 2273 2025-12-30 01:06 ./usr/share/doc/any2fasta/README.md.gz -rw-r--r-- root/root 347 2026-04-10 20:20 ./usr/share/doc/any2fasta/changelog.Debian.gz -rw-r--r-- root/root 871 2026-04-10 20:20 ./usr/share/doc/any2fasta/copyright +------------------------------------------------------------------------------+ | Post Build Sat, 11 Apr 2026 04:02:08 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 11 Apr 2026 04:02:08 +0000 | +------------------------------------------------------------------------------+ Purging /build/any2fasta-G6M14p Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 11 Apr 2026 04:02:09 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 43356 Build-Time: 18 Distribution: perl-5.42-throwaway Host Architecture: amd64 Install-Time: 5 Job: /srv/debomatic/incoming/any2fasta_0.8.1-1.dsc Machine Architecture: amd64 Package: any2fasta Package-Time: 26 Source-Version: 0.8.1-1 Space: 43356 Status: successful Version: 0.8.1-1 -------------------------------------------------------------------------------- Finished at 2026-04-11T04:02:08Z Build needed 00:00:26, 43356k disk space