sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | librg-blast-parser-perl 0.03-9+b4 (amd64) Sat, 14 Sep 2024 12:36:45 +0000 | +==============================================================================+ Package: librg-blast-parser-perl Version: 0.03-9+b4 Source Version: 0.03-9 Distribution: perl-5.40 Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-eb96d6f1-aaa8-43a2-86e1-0da4f9e472c8' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup librg-blast-parser-perl_0.03-9 perl-5.40 amd64 --------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup librg-blast-parser-perl_0.03-9 perl-5.40 amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/librg-blast-parser-perl-bxVqdu/resolver-yrZtLW' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://localhost:3142/debian sid InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:3 http://deb.debian.org/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/librg-blast-parser-perl_0.03-9.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/librg-blast-parser-perl-bxVqdu/librg-blast-parser-perl-0.03' with '<>' I: NOTICE: Log filtering will replace 'build/librg-blast-parser-perl-bxVqdu' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.1-12), librostlab3-dev, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.1-12), librostlab3-dev, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [705 B] Get:5 copy:/<>/apt_archive ./ Packages [737 B] Fetched 2051 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libextutils-xspp-perl libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 librostlab-blast0-dev librostlab-blast0v5 librostlab3-dev librostlab3t64 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff librostlab-blast-doc librostlab-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libextutils-xspp-perl libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 librostlab-blast0-dev librostlab-blast0v5 librostlab3-dev librostlab3t64 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 20.2 MB of archives. After this operation, 79.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libextutils-xspp-perl all 0.1800-3 [146 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 librostlab-blast0v5 amd64 1.0.1-14 [76.8 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 librostlab3t64 amd64 1.0.20-13.1 [5036 B] Get:36 http://deb.debian.org/debian unstable/main amd64 librostlab3-dev amd64 1.0.20-13.1 [12.5 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 librostlab-blast0-dev amd64 1.0.1-14 [91.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.2 MB in 0s (121 MB/s) Selecting previously unselected package sensible-utils. 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Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-4 gcc-13_13.3.0-6 gcc-14_14.2.0-4 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-4 cpp-14-x86-64-linux-gnu_14.2.0-4 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-4 g++-14-x86-64-linux-gnu_14.2.0-4 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-4 gcc-14-base_14.2.0-4 gcc-14-x86-64-linux-gnu_14.2.0-4 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8+b1 gpg_2.2.43-8+b1 gpg-agent_2.2.43-8+b1 gpg-wks-client_2.2.43-8+b1 gpgconf_2.2.43-8+b1 gpgsm_2.2.43-8+b1 gpgv_2.2.43-8+b1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-4 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-4 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-4 libblkid1_2.40.2-8 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-6 libc-bin_2.40-2 libc-dev-bin_2.40-2 libc-l10n_2.40-2 libc6_2.40-2 libc6-dev_2.40-2 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-4 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-4 libctf0_2.43.1-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libextutils-xspp-perl_0.1800-3 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-6 libgcc-14-dev_14.2.0-4 libgcc-s1_14.2.0-4 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-4 libgpg-error0_1.50-3 libgprofng0_2.43.1-4 libhogweed6t64_3.10-1 libhwasan0_14.2.0-4 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-4 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-3+b1 liblsan0_14.2.0-4 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-5 libpipeline1_1.5.8-1 libquadmath0_14.2.0-4 libreadline8t64_8.2-5 librostlab-blast0-dev_1.0.1-14 librostlab-blast0v5_1.0.1-14 librostlab3-dev_1.0.20-13.1 librostlab3t64_1.0.20-13.1 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-4 libsmartcols1_2.40.2-8 libsqlite3-0_3.46.1-1 libssl3t64_3.3.2-1 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-4 libubsan1_14.2.0-4 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunistring5_1.2-1 libuuid1_2.40.2-8 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.9-1 locales-all_2.40-2 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 pinentry-curses_1.2.1-4+b1 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: librg-blast-parser-perl Binary: librg-blast-parser-perl Architecture: any Version: 0.03-9 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/librg-blast-parser-perl Vcs-Git: https://salsa.debian.org/med-team/librg-blast-parser-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.1-12), librostlab3-dev, debhelper Package-List: librg-blast-parser-perl deb perl optional arch=any Checksums-Sha1: 70dde0ef7c45b2e633b2c4c738d384be6b4a0483 11635 librg-blast-parser-perl_0.03.orig.tar.gz 01157df79a0f0d181ac833ac0560f44170b8d942 6132 librg-blast-parser-perl_0.03-9.debian.tar.xz Checksums-Sha256: 215ecf7417de5ceedafc6466bd77b54ede07aab514bf3e5a0ea7245d509746cb 11635 librg-blast-parser-perl_0.03.orig.tar.gz 53957dce204a85e9e7152be04d295b16e310a050babc45d0faec2fa8cb84c0a4 6132 librg-blast-parser-perl_0.03-9.debian.tar.xz Files: 8dc732930465144a0affcb9ba38a9df9 11635 librg-blast-parser-perl_0.03.orig.tar.gz dbc5a14b9df795756bb011c1c2fd1146 6132 librg-blast-parser-perl_0.03-9.debian.tar.xz Dgit: 8d27bfcbcd341745269db698c553371b66ba681c debian archive/debian/0.03-9 https://git.dgit.debian.org/librg-blast-parser-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmM2yHgUHGVtb2xsaWVy 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signature for ./librg-blast-parser-perl_0.03-9.dsc: no acceptable signature found dpkg-source: info: extracting librg-blast-parser-perl in /<> dpkg-source: info: unpacking librg-blast-parser-perl_0.03.orig.tar.gz dpkg-source: info: unpacking librg-blast-parser-perl_0.03-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_clash_YYEMPTY.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 0.03-9+b4 +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network librg-blast-parser-perl_0.03-9 perl-5.40 amd64 --------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network librg-blast-parser-perl_0.03-9 perl-5.40 amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-eb96d6f1-aaa8-43a2-86e1-0da4f9e472c8 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mDebian Perl autobuilder -B -rfakeroot -Zxz dpkg-buildpackage: info: source package librg-blast-parser-perl dpkg-buildpackage: info: source version 0.03-9+b4 dpkg-buildpackage: info: source distribution perl-5.40 dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- LD="'x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++03" /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" "LD='x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++03" Checking if your kit is complete... Warning: the following files are missing in your kit: Parser.bs Parser.c Parser.o t/RG-Blast-Parser.t Please inform the author. Generating a Unix-style Makefile Writing Makefile for RG::Blast::Parser Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/<>' dh_auto_build -a make -j2 make[1]: Entering directory '/<>' Running Mkbootstrap for Parser () chmod 644 "Parser.bs" "/usr/bin/perl" "/usr/share/perl/5.40/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.40/ExtUtils/typemap' -typemap '/<>/perlobject.map' -typemap '/<>/typemap' Parser.xs > Parser.xsc cp lib/RG/Blast/Parser.pm blib/lib/RG/Blast/Parser.pm AutoSplitting blib/lib/RG/Blast/Parser.pm (blib/lib/auto/RG/Blast/Parser) "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 mv Parser.xsc Parser.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++03 -DVERSION=\"0.03\" -DXS_VERSION=\"0.03\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE" Parser.c cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /usr/bin/perl -MExtUtils::XSpp::Cmd -e xspp -- --typemap=typemap.xsp Parser.xsp: In function ‘void XS_RG__Blast__Parser_parse(PerlInterpreter*, CV*)’: /usr/bin/perl -MExtUtils::XSpp::Cmd -e xspp -- --typemap=typemap.xsp Parser.xsp:51:57: warning: too many arguments for format [-Wformat-extra-args] rm -f blib/arch/auto/RG/Blast/Parser/Parser.so 'x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong Parser.o -o blib/arch/auto/RG/Blast/Parser/Parser.so \ -lrostlab-blast \ chmod 755 blib/arch/auto/RG/Blast/Parser/Parser.so Manifying 1 pod document make[1]: Leaving directory '/<>' dh_auto_test -a make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01RG-Blast-Parserload.t .. 1..1 ok 1 - use RG::Blast::Parser; ok examples/badformat.ali:46.1-7: invalid character 'Q' examples/badformat.ali:46.1-8: invalid character 'u' examples/badformat.ali:46.1-9: invalid character 'e' examples/badformat.ali:46.1-10: invalid character 'r' examples/badformat.ali:46.1-11: invalid character 'y' examples/badformat.ali:46.1-12: invalid character ':' examples/badformat.ali:46.14: syntax error, unexpected INT t/02test.t ................. 1..23 ok 1 - use RG::Blast::Parser; ok 2 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 3 - RG::Blast::Parser->can(...) ok 4 ok 5 ok 6 ok 7 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 8 - RG::Blast::Parser->can(...) ok 9 ok 10 ok 11 ok 12 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 13 - RG::Blast::Parser->can(...) ok 14 ok 15 ok 16 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 17 - RG::Blast::Parser->can(...) ok 18 ok 19 ok 20 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 21 - RG::Blast::Parser->can(...) ok 22 ok 23 ok All tests successful. Files=2, Tests=24, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.07 cusr 0.03 csys = 0.12 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/librg-blast-parser-perl/ -a make -j2 install DESTDIR=/<>/debian/librg-blast-parser-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/librg-blast-parser-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/Parser.so Installing /<>/debian/librg-blast-parser-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/autosplit.ix Installing /<>/debian/librg-blast-parser-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/RG/Blast/Parser.pm Installing /<>/debian/librg-blast-parser-perl/usr/share/man/man3/RG::Blast::Parser.3pm make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'librg-blast-parser-perl-dbgsym' in '../librg-blast-parser-perl-dbgsym_0.03-9+b4_amd64.deb'. dpkg-deb: building package 'librg-blast-parser-perl' in '../librg-blast-parser-perl_0.03-9+b4_amd64.deb'. dpkg-genbuildinfo --build=any -O../librg-blast-parser-perl_0.03-9+b4_amd64.buildinfo dpkg-genchanges --build=any -mDebian Perl autobuilder -O../librg-blast-parser-perl_0.03-9+b4_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-09-14T12:37:03Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ librg-blast-parser-perl_0.03-9+b4_amd64.changes: ------------------------------------------------ Format: 1.8 Date: Sat, 14 Sep 2024 12:36:57 +0000 Source: librg-blast-parser-perl (0.03-9) Binary: librg-blast-parser-perl librg-blast-parser-perl-dbgsym Binary-Only: yes Architecture: amd64 Version: 0.03-9+b4 Distribution: perl-5.40 Urgency: low Maintainer: Debian Perl autobuilder Changed-By: Debian Perl autobuilder Description: librg-blast-parser-perl - very fast NCBI BLAST parser - binding for Perl Changes: librg-blast-parser-perl (0.03-9+b4) perl-5.40; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for Perl 5.40 Checksums-Sha1: f6a846ab90cd3eabb07a5772743aca83e1583590 193856 librg-blast-parser-perl-dbgsym_0.03-9+b4_amd64.deb a1e19937d5033db37ed4d74816726f56dc2aaf17 5677 librg-blast-parser-perl_0.03-9+b4_amd64.buildinfo b3fe39a53fb91f03aedc7667e5a5e0145849f0f2 34856 librg-blast-parser-perl_0.03-9+b4_amd64.deb Checksums-Sha256: 18377c140153cc972f965ed0164825f887f061e0b5d7584eddf5e196dcbb304d 193856 librg-blast-parser-perl-dbgsym_0.03-9+b4_amd64.deb 0ab9535e7ee85238a1e77e354ca9e49c8ae53ea751d7f1b288c5c05f084bd719 5677 librg-blast-parser-perl_0.03-9+b4_amd64.buildinfo 8577efe67e11bae63bf2eabd80d11cbb94b31fdcf171822c5405e19ba7ae60f5 34856 librg-blast-parser-perl_0.03-9+b4_amd64.deb Files: 5c37999dbb7199d870a117c44d8ba1b6 193856 debug optional librg-blast-parser-perl-dbgsym_0.03-9+b4_amd64.deb 3772955977c1ed5402c6bd9bec204617 5677 perl optional librg-blast-parser-perl_0.03-9+b4_amd64.buildinfo 437658dc2947da7b1e9c13308c3e2dbf 34856 perl optional librg-blast-parser-perl_0.03-9+b4_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: librg-blast-parser-perl (0.03-9) Binary: librg-blast-parser-perl librg-blast-parser-perl-dbgsym Architecture: amd64 Version: 0.03-9+b4 Binary-Only-Changes: librg-blast-parser-perl (0.03-9+b4) perl-5.40; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for Perl 5.40 . -- Debian Perl autobuilder Sat, 14 Sep 2024 12:36:57 +0000 Checksums-Md5: 5c37999dbb7199d870a117c44d8ba1b6 193856 librg-blast-parser-perl-dbgsym_0.03-9+b4_amd64.deb 437658dc2947da7b1e9c13308c3e2dbf 34856 librg-blast-parser-perl_0.03-9+b4_amd64.deb Checksums-Sha1: f6a846ab90cd3eabb07a5772743aca83e1583590 193856 librg-blast-parser-perl-dbgsym_0.03-9+b4_amd64.deb b3fe39a53fb91f03aedc7667e5a5e0145849f0f2 34856 librg-blast-parser-perl_0.03-9+b4_amd64.deb Checksums-Sha256: 18377c140153cc972f965ed0164825f887f061e0b5d7584eddf5e196dcbb304d 193856 librg-blast-parser-perl-dbgsym_0.03-9+b4_amd64.deb 8577efe67e11bae63bf2eabd80d11cbb94b31fdcf171822c5405e19ba7ae60f5 34856 librg-blast-parser-perl_0.03-9+b4_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 14 Sep 2024 12:37:02 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-4), binutils-common (= 2.43.1-4), binutils-x86-64-linux-gnu (= 2.43.1-4), bsdextrautils (= 2.40.2-8), bsdutils (= 1:2.40.2-8), build-essential (= 12.10), bzip2 (= 1.0.8-6), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-6), cpp-13-x86-64-linux-gnu (= 13.3.0-6), cpp-14 (= 14.2.0-4), cpp-14-x86-64-linux-gnu (= 14.2.0-4), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-4), g++-14-x86-64-linux-gnu (= 14.2.0-4), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-6), gcc-13-base (= 13.3.0-6), gcc-13-x86-64-linux-gnu (= 13.3.0-6), gcc-14 (= 14.2.0-4), gcc-14-base (= 14.2.0-4), gcc-14-x86-64-linux-gnu (= 14.2.0-4), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-4), libatomic1 (= 14.2.0-4), libattr1 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1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-5), perl-base (= 5.40.0-5), perl-modules-5.40 (= 5.40.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-8), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1726317417" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ librg-blast-parser-perl-dbgsym_0.03-9+b4_amd64.deb -------------------------------------------------- new Debian package, version 2.0. size 193856 bytes: control archive=556 bytes. 447 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: librg-blast-parser-perl-dbgsym Source: librg-blast-parser-perl (0.03-9) Version: 0.03-9+b4 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 215 Depends: librg-blast-parser-perl (= 0.03-9+b4) Section: debug Priority: optional Description: debug symbols for librg-blast-parser-perl Build-Ids: 9ecd113f46aa77cdf30c81b0a09b3f2042108d9c drwxr-xr-x root/root 0 2024-09-14 12:36 ./ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/debug/.build-id/9e/ -rw-r--r-- root/root 209400 2024-09-14 12:36 ./usr/lib/debug/.build-id/9e/cd113f46aa77cdf30c81b0a09b3f2042108d9c.debug drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/share/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-09-14 12:36 ./usr/share/doc/librg-blast-parser-perl-dbgsym -> librg-blast-parser-perl librg-blast-parser-perl_0.03-9+b4_amd64.deb ------------------------------------------- new Debian package, version 2.0. size 34856 bytes: control archive=1220 bytes. 749 bytes, 17 lines control 1351 bytes, 15 lines md5sums Package: librg-blast-parser-perl Source: librg-blast-parser-perl (0.03-9) Version: 0.03-9+b4 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 131 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), librostlab-blast0v5 (>= 1.0.1), perl (>= 5.40.0-5), perlapi-5.40.0 Section: perl Priority: optional Homepage: https://rostlab.org/ Description: very fast NCBI BLAST parser - binding for Perl This package contains Perl binding for a very fast C++ library that parses the default output of NCBI BLAST programs. BLAST results are returned in a convenient hash structure. . Evaluated on a very small test set, this parser is considerably faster than Zerg::Report from libzerg-perl. drwxr-xr-x root/root 0 2024-09-14 12:36 ./ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/perl5/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/perl5/5.40/RG/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/perl5/5.40/RG/Blast/ -rw-r--r-- root/root 6068 2012-07-06 13:05 ./usr/lib/x86_64-linux-gnu/perl5/5.40/RG/Blast/Parser.pm drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/RG/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/RG/Blast/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/ -rw-r--r-- root/root 63512 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/Parser.so -rw-r--r-- root/root 94 2024-09-14 12:36 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/autosplit.ix drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/share/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/share/doc/librg-blast-parser-perl/ -rw-r--r-- root/root 482 2012-03-27 16:26 ./usr/share/doc/librg-blast-parser-perl/01RG-Blast-Parserload.t -rw-r--r-- root/root 2151 2012-03-28 14:54 ./usr/share/doc/librg-blast-parser-perl/02test.t -rw-r--r-- root/root 745 2012-03-29 10:58 ./usr/share/doc/librg-blast-parser-perl/README -rw-r--r-- root/root 648 2022-09-30 10:04 ./usr/share/doc/librg-blast-parser-perl/README.test -rw-r--r-- root/root 214 2024-09-14 12:36 ./usr/share/doc/librg-blast-parser-perl/changelog.Debian.amd64.gz -rw-r--r-- root/root 771 2024-09-14 12:36 ./usr/share/doc/librg-blast-parser-perl/changelog.Debian.gz -rw-r--r-- root/root 272 2012-07-06 13:06 ./usr/share/doc/librg-blast-parser-perl/changelog.gz -rw-r--r-- root/root 9640 2022-09-30 10:04 ./usr/share/doc/librg-blast-parser-perl/copyright drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/share/doc/librg-blast-parser-perl/examples/ -rw-r--r-- root/root 4462 2012-03-27 16:26 ./usr/share/doc/librg-blast-parser-perl/examples/badformat.ali -rw-r--r-- root/root 4462 2012-03-27 16:26 ./usr/share/doc/librg-blast-parser-perl/examples/converged.ali -rw-r--r-- root/root 10119 2012-03-27 16:26 ./usr/share/doc/librg-blast-parser-perl/examples/twores.ali drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/share/man/ drwxr-xr-x root/root 0 2024-09-14 12:36 ./usr/share/man/man3/ -rw-r--r-- root/root 2555 2024-09-14 12:36 ./usr/share/man/man3/RG::Blast::Parser.3pm.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 3124 Build-Time: 6 Distribution: perl-5.40 Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/librg-blast-parser-perl_0.03-9.dsc Machine Architecture: amd64 Package: librg-blast-parser-perl Package-Time: 18 Source-Version: 0.03-9 Space: 3124 Status: successful Version: 0.03-9+b4 -------------------------------------------------------------------------------- Finished at 2024-09-14T12:37:03Z Build needed 00:00:18, 3124k disk space