sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk +==============================================================================+ | libfreecontact-perl 0.08-9+b5 (amd64) Sat, 01 Jun 2024 19:34:13 +0000 | +==============================================================================+ Package: libfreecontact-perl Version: 0.08-9+b5 Source Version: 0.08-9 Distribution: perl-5.40 Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = "en_GB:en", LC_ALL = (unset), LC_CTYPE = (unset), LC_NUMERIC = (unset), LC_COLLATE = (unset), LC_TIME = (unset), LC_MESSAGES = (unset), LC_MONETARY = (unset), LC_ADDRESS = (unset), LC_IDENTIFICATION = (unset), LC_MEASUREMENT = (unset), LC_PAPER = (unset), LC_TELEPHONE = (unset), LC_NAME = (unset), LANG = "en_GB.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-b1272615-3b61-40c3-99b3-3236eca59fd5' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libfreecontact-perl_0.08-9 perl-5.40 amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libfreecontact-perl_0.08-9 perl-5.40 amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libfreecontact-perl-dETJM4/resolver-mecnTL' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3033 B] Get:1 file:/srv/reprepro perl-5.40 InRelease [3033 B] Get:2 file:/srv/reprepro perl-5.40/main amd64 Packages [50.2 kB] Hit:3 http://localhost:3142/debian unstable InRelease Hit:4 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libfreecontact-perl_0.08-9.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libfreecontact-perl-dETJM4/libfreecontact-perl-0.08' with '<>' I: NOTICE: Log filtering will replace 'build/libfreecontact-perl-dETJM4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [677 B] Get:5 copy:/<>/apt_archive ./ Packages [709 B] Fetched 1995 B in 0s (92.3 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libdebhelper-perl libelf1t64 libextutils-xspp-perl libfakeroot libfile-stripnondeterminism-perl libfreecontact-dev libfreecontact0t64 libgfortran5 libicu72 liblapack3 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libfreecontact-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libdebhelper-perl libelf1t64 libextutils-xspp-perl libfakeroot libfile-stripnondeterminism-perl libfreecontact-dev libfreecontact0t64 libgfortran5 libicu72 liblapack3 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 22.8 MB of archives. After this operation, 86.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.1-4 [95.7 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:24 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get:27 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:28 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://localhost:3142/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:32 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libextutils-xspp-perl all 0.1800-3 [146 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libgfortran5 amd64 14.1.0-1 [836 kB] Get:36 http://localhost:3142/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libfreecontact0t64 amd64 1.0.21-13.1+b1 [80.3 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libfreecontact-dev amd64 1.0.21-13.1+b1 [89.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.8 MB in 1s (35.4 MB/s) Selecting previously unselected package sensible-utils. 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Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up autopoint (0.21-14) ... Setting up libgfortran5:amd64 (14.1.0-1) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libfreecontact0t64:amd64 (1.0.21-13.1+b1) ... Setting up groff-base (1.23.0-4) ... Setting up libfreecontact-dev:amd64 (1.0.21-13.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-11) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-11 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.11-1 Package versions: adduser_3.137 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40.1-4 bsdutils_1:2.40.1-4 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-x86-64-linux-gnu_13.2.0-25 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-x86-64-linux-gnu_13.2.0-25 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.4 libarchive-zip-perl_1.68-1 libasan8_14.1.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.1.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblas3_3.12.0-3 libblkid1_2.40.1-4 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-11 libc-dev-bin_2.38-11 libc6_2.38-11 libc6-dev_2.38-11 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcc1-0_14.1.0-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.15.3 libdpkg-perl_1.22.6 libeatmydata1_131-2 libelf1t64_0.191-1+b1 libextutils-xspp-perl_0.1800-3 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libfreecontact-dev_1.0.21-13.1+b1 libfreecontact0t64_1.0.21-13.1+b1 libgcc-13-dev_13.2.0-25 libgcc-s1_14.1.0-1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgfortran5_14.1.0-1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-3 libgomp1_14.1.0-1 libgpg-error0_1.49-2 libgprofng0_2.42-4 libhogweed6t64_3.9.1-2.2 libhwasan0_14.1.0-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libisl23_0.26-3+b2 libitm1_14.1.0-1 libjansson4_2.14-2+b2 libksba8_1.6.6-1 liblapack3_3.12.0-3 libldap-2.5-0_2.5.17+dfsg-1 liblsan0_14.1.0-1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.1-4 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.9.1-2.2 libnpth0t64_1.6-3.1 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0~rc1-1 libpipeline1_1.5.7-2 libquadmath0_14.1.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.40.1-4 libsqlite3-0_3.46.0-1 libssl3t64_3.2.1-3 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 libsystemd0_256~rc3-7 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.1.0-1 libubsan1_14.1.0-1 libuchardet0_0.0.8-1+b1 libudev1_256~rc3-7 libunistring5_1.2-1 libuuid1_2.40.1-4 libxml2_2.12.7+dfsg-2 libxxhash0_0.8.2-2+b1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.11-1 login_1:4.13+dfsg1-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.40.0~rc1-1 perl-base_5.40.0~rc1-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0~rc1-1 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.1-4 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libfreecontact-perl Binary: libfreecontact-perl Architecture: any Version: 0.08-9 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libfreecontact-perl Vcs-Git: https://salsa.debian.org/med-team/libfreecontact-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl, debhelper Package-List: libfreecontact-perl deb perl optional arch=any Checksums-Sha1: dea098c8025b42e79227265dd74252ceedbfa007 58672 libfreecontact-perl_0.08.orig.tar.gz d2bdf94b23d0ca1fce6bb1df286ba03736b17947 4148 libfreecontact-perl_0.08-9.debian.tar.xz Checksums-Sha256: 7386762985b9e36ec13379948528f1f18e49cf799ba5436a46aa60e9cb041911 58672 libfreecontact-perl_0.08.orig.tar.gz 7264029a96308f34c90fc201b3b7ee6f75cd12f5412f34b57098cb32ab6fdea5 4148 libfreecontact-perl_0.08-9.debian.tar.xz Files: 798e25cfc3954e027d208f62dd3fe6ea 58672 libfreecontact-perl_0.08.orig.tar.gz 49edda281a739efab371adb449402c83 4148 libfreecontact-perl_0.08-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHodgoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE0jg/+NNIJ0xmtW0+M4m7Z/M7RJunfhXJEXyCJ 2uR3K+0jyER5JJ9UQw7TMR+M19NCliWpTWdXlNYC1+p9chj46IlW/pV1+lNAsOes jmWO/JJLVAn2hexfmzBQytW7UGG+EZyiSIJYo/Wxv6D+vQ413lAbCrO59fRVj2Pu c9WMMSHcGetF7E/CUQukaR5Uu76598/h85WKBbiFH5BW/jl0zGB7HsGq3dnc9ahT rIgFhhynzmnNuWKiC0S6RADvma1YLGBWyuixygruRhk2TxRtFXH1jT7pYyCFpC7v f958/c6mH+D3yzuXYRSjki3fdA5k9kcD++c3zzTt2VtOEFlp/eqoN2n0M17aOvNQ sEPqpXzWhDZ6K2/1ICWGKA5WvbjUA9xOcpe5uu8582OVmqVsnBxE5ED27HYngE4b 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space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 0.08-9+b5 +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libfreecontact-perl_0.08-9 perl-5.40 amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libfreecontact-perl_0.08-9 perl-5.40 amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-b1272615-3b61-40c3-99b3-3236eca59fd5 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mDebian Perl autobuilder -B -rfakeroot -Zxz dpkg-buildpackage: info: source package libfreecontact-perl dpkg-buildpackage: info: source version 0.08-9+b5 dpkg-buildpackage: info: source distribution perl-5.40 dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f Makefile.old dh_auto_clean make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LD="'x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" "LD='x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for FreeContact Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/<>' dh_auto_build -a make -j2 make[1]: Entering directory '/<>' Running Mkbootstrap for FreeContact () cp lib/FreeContact.pm blib/lib/FreeContact.pm AutoSplitting blib/lib/FreeContact.pm (blib/lib/auto/FreeContact) "/usr/bin/perl" "/usr/share/perl/5.40/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.40/ExtUtils/typemap' -typemap '/<>/perlobject.map' -typemap '/<>/typemap' -typemap '/<>/typemap' FreeContact.xs > FreeContact.xsc chmod 644 "FreeContact.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 mv FreeContact.xsc FreeContact.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DVERSION=\"0.08\" -DXS_VERSION=\"0.08\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE" FreeContact.c cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ rm -f blib/arch/auto/FreeContact/FreeContact.so 'x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong FreeContact.o -o blib/arch/auto/FreeContact/FreeContact.so \ -lfreecontact \ chmod 755 blib/arch/auto/FreeContact/FreeContact.so Manifying 1 pod document make[1]: Leaving directory '/<>' dh_auto_test -a make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01FreeContact.t .. 1..3 ok 1 - use FreeContact; ok 2 - FreeContact->can(...) ok 3 - FreeContact::Predictor->can(...) ok will use 1 OMP threads SSE2 veczweight, wchunk = 64 total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.002966 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.052142 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.13701 secs, inverted matrix (incl LUf) in 9.97324 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 all done in 10.1126 secs will use 1 OMP threads SSE2 veczweight, wchunk = 64 total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.002655 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.052837 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 5.25468 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5 iteration = 6 iteration = 7will use 1 OMP threads SSE2 veczweight, wchunk = 64 total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.045833 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.48162 secs, inverted matrix (incl LUf) in 10.9529 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 t/02test.t ......... 1..10 ok 1 - use FreeContact; ok 2 - An object of class 'FreeContact::Predictor' isa 'FreeContact::Predictor' ok 3 ok 4 ok 5 - precision test ok 6 - timing results test ok 7 ok 8 ok 9 - wtot test ok 10 - wtot precision test ok All tests successful. Files=2, Tests=13, 29 wallclock secs ( 0.03 usr 0.01 sys + 24.78 cusr 0.44 csys = 25.26 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/libfreecontact-perl/ -a make -j2 install DESTDIR=/<>/debian/libfreecontact-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/libfreecontact-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/FreeContact/FreeContact.so Installing /<>/debian/libfreecontact-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/FreeContact.pm Installing /<>/debian/libfreecontact-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/FreeContact/autosplit.ix Installing /<>/debian/libfreecontact-perl/usr/share/man/man3/FreeContact.3pm make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- '-VDescription=FreeContact is a protein residue contact predictor optimized for speed.${Newline}Its input is a multiple sequence alignment. FreeContact can function as an${Newline}accelerated drop-in for the published contact predictors${Newline}EVfold-mfDCA of DS. Marks (2011) and${Newline}PSICOV of D. Jones (2011).${Newline}${Newline}FreeContact is accelerated by a combination of vector instructions, multiple${Newline}threads, and faster implementation of key parts.${Newline}Depending on the alignment, 8-fold or higher speedups are possible.${Newline}${Newline}A sufficiently large alignment is required for meaningful results.${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count${Newline}bigger than the length of the query sequence should be used. Alignments with${Newline}tens of thousands of (effective) sequences are considered good input.${Newline}${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite${Newline}can be used to generate the alignments, for example.' make[1]: Leaving directory '/<>' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libfreecontact-perl' in '../libfreecontact-perl_0.08-9+b5_amd64.deb'. dpkg-deb: building package 'libfreecontact-perl-dbgsym' in '../libfreecontact-perl-dbgsym_0.08-9+b5_amd64.deb'. dpkg-genbuildinfo --build=any -O../libfreecontact-perl_0.08-9+b5_amd64.buildinfo dpkg-genchanges --build=any -mDebian Perl autobuilder -O../libfreecontact-perl_0.08-9+b5_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-06-01T19:34:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libfreecontact-perl_0.08-9+b5_amd64.changes: -------------------------------------------- Format: 1.8 Date: Sat, 01 Jun 2024 19:34:23 +0000 Source: libfreecontact-perl (0.08-9) Binary: libfreecontact-perl libfreecontact-perl-dbgsym Binary-Only: yes Architecture: amd64 Version: 0.08-9+b5 Distribution: perl-5.40 Urgency: low Maintainer: Debian Perl autobuilder Changed-By: Debian Perl autobuilder Description: libfreecontact-perl - fast protein contact predictor - binding for Perl Changes: libfreecontact-perl (0.08-9+b5) perl-5.40; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for Perl 5.40 Checksums-Sha1: e306c8e9009e97b146e9e87bb030f4e479dbaba4 164064 libfreecontact-perl-dbgsym_0.08-9+b5_amd64.deb 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+------------------------------------------------------------------------------+ Format: 1.0 Source: libfreecontact-perl (0.08-9) Binary: libfreecontact-perl libfreecontact-perl-dbgsym Architecture: amd64 Version: 0.08-9+b5 Binary-Only-Changes: libfreecontact-perl (0.08-9+b5) perl-5.40; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for Perl 5.40 . -- Debian Perl autobuilder Sat, 01 Jun 2024 19:34:23 +0000 Checksums-Md5: 7649cc8b50c871601f329bb34dce7822 164064 libfreecontact-perl-dbgsym_0.08-9+b5_amd64.deb 8312b512d0ef916e3808ec5b1bfc359e 63780 libfreecontact-perl_0.08-9+b5_amd64.deb Checksums-Sha1: e306c8e9009e97b146e9e87bb030f4e479dbaba4 164064 libfreecontact-perl-dbgsym_0.08-9+b5_amd64.deb 7185b5d45adce2ef794087baee1586fe293f91e6 63780 libfreecontact-perl_0.08-9+b5_amd64.deb Checksums-Sha256: 085951a93f4096f88686753a7b39085d0cf0ce2ce09ca82881255c9733a4ae23 164064 libfreecontact-perl-dbgsym_0.08-9+b5_amd64.deb 03f17eab3f52a28f408e4710f36263d4fcc84ebc5fd2d487e0ea682ced5e9791 63780 libfreecontact-perl_0.08-9+b5_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 01 Jun 2024 19:34:58 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.2), base-passwd (= 3.6.3), bash (= 5.2.21-2+b1), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40.1-4), bsdutils (= 1:2.40.1-4), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-25), cpp-13-x86-64-linux-gnu (= 13.2.0-25), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-8), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), 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1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.1-4), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1717270463" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libfreecontact-perl-dbgsym_0.08-9+b5_amd64.deb ---------------------------------------------- new Debian package, version 2.0. size 164064 bytes: control archive=552 bytes. 431 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libfreecontact-perl-dbgsym Source: libfreecontact-perl (0.08-9) Version: 0.08-9+b5 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 177 Depends: libfreecontact-perl (= 0.08-9+b5) Section: debug Priority: optional Description: debug symbols for libfreecontact-perl Build-Ids: fb110d28d4f65dd32485f953b7f57350d355df2d drwxr-xr-x root/root 0 2024-06-01 19:34 ./ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/lib/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/lib/debug/.build-id/fb/ -rw-r--r-- root/root 170752 2024-06-01 19:34 ./usr/lib/debug/.build-id/fb/110d28d4f65dd32485f953b7f57350d355df2d.debug drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/share/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-06-01 19:34 ./usr/share/doc/libfreecontact-perl-dbgsym -> libfreecontact-perl libfreecontact-perl_0.08-9+b5_amd64.deb --------------------------------------- new Debian package, version 2.0. size 63780 bytes: control archive=1388 bytes. 1419 bytes, 30 lines control 866 bytes, 10 lines md5sums Package: libfreecontact-perl Source: libfreecontact-perl (0.08-9) Version: 0.08-9+b5 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 213 Depends: libc6 (>= 2.34), libfreecontact0t64 (>= 1.0.21), libgcc-s1 (>= 3.0), perl (>= 5.40.0~rc1-1), perlapi-5.40.0 Section: perl Priority: optional Homepage: https://rostlab.org/owiki/index.php/FreeContact Description: fast protein contact predictor - binding for Perl FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). . FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. . A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. . jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. . This package contains the Perl binding. drwxr-xr-x root/root 0 2024-06-01 19:34 ./ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/lib/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/lib/x86_64-linux-gnu/perl5/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ -rw-r--r-- root/root 7635 2013-07-17 15:23 ./usr/lib/x86_64-linux-gnu/perl5/5.40/FreeContact.pm drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/FreeContact/ -rw-r--r-- root/root 55320 2024-06-01 19:34 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/FreeContact/FreeContact.so -rw-r--r-- root/root 90 2024-06-01 19:34 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/FreeContact/autosplit.ix drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/share/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/share/doc/libfreecontact-perl/ -rw-r--r-- root/root 686 2013-05-10 16:19 ./usr/share/doc/libfreecontact-perl/README -rw-r--r-- root/root 211 2024-06-01 19:34 ./usr/share/doc/libfreecontact-perl/changelog.Debian.amd64.gz -rw-r--r-- root/root 680 2024-06-01 19:34 ./usr/share/doc/libfreecontact-perl/changelog.Debian.gz -rw-r--r-- root/root 537 2013-09-19 10:10 ./usr/share/doc/libfreecontact-perl/changelog.gz -rw-r--r-- root/root 1124 2022-01-19 20:31 ./usr/share/doc/libfreecontact-perl/copyright drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/share/doc/libfreecontact-perl/examples/ -rw-r--r-- root/root 127000 2013-04-30 11:59 ./usr/share/doc/libfreecontact-perl/examples/demo_1000.aln drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/share/man/ drwxr-xr-x root/root 0 2024-06-01 19:34 ./usr/share/man/man3/ -rw-r--r-- root/root 2881 2024-06-01 19:34 ./usr/share/man/man3/FreeContact.3pm.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 2800 Build-Time: 36 Distribution: perl-5.40 Host Architecture: amd64 Install-Time: 6 Job: /srv/debomatic/incoming/libfreecontact-perl_0.08-9.dsc Machine Architecture: amd64 Package: libfreecontact-perl Package-Time: 46 Source-Version: 0.08-9 Space: 2800 Status: successful Version: 0.08-9+b5 -------------------------------------------------------------------------------- Finished at 2024-06-01T19:34:59Z Build needed 00:00:46, 2800k disk space