sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk

+==============================================================================+
| altree 1.3.2-2+b4 (amd64)                    Fri, 02 Aug 2024 11:44:34 +0000 |
+==============================================================================+

Package: altree
Version: 1.3.2-2+b4
Source Version: 1.3.2-2
Distribution: perl-5.40
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-905b0ad0-dbc7-4adf-ad7f-383dd2faaaaa' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup altree_1.3.2-2 perl-5.40 amd64
-----------------------------------------------------------------------------------------------------


I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup altree_1.3.2-2 perl-5.40 amd64'.

Finished processing commands.
--------------------------------------------------------------------------------
I: NOTICE: Log filtering will replace 'build/altree-6jnM0X/resolver-KDAVrU' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B]
Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B]
Get:2 file:/srv/reprepro perl-5.40/main amd64 Packages [390 kB]
Hit:3 http://deb.debian.org/debian unstable InRelease
Hit:4 http://localhost:3142/debian sid InRelease
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

/srv/debomatic/incoming/altree_1.3.2-2.dsc exists in /srv/debomatic/incoming; copying to chroot
I: NOTICE: Log filtering will replace 'build/altree-6jnM0X/altree-1.3.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/altree-6jnM0X' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev, build-essential, fakeroot
Filtered Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev, libtest-deep-perl, fig2dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [845 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [864 B]
Fetched 2318 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bash-completion bsdextrautils
  debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot fig2dev file
  fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base
  ghostscript groff-base intltool-debian latex-make libapache-pom-java
  libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3
  libblas-dev libblas3 libbrotli1 libcairo2 libcom-err2
  libcommons-logging-java libcommons-parent-java libcups2t64 libdbus-1-3
  libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfakeroot
  libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1
  libfreetype6 libglib2.0-0t64 libgraphite2-3 libgs-common libgs10
  libgs10-common libgsl-dev libgsl28 libgslcblas0 libgssapi-krb5-2
  libharfbuzz0b libice6 libicu72 libidn12 libijs-0.35 libjbig0 libjbig2dec0
  libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3
  libkrb5support0 liblcms2-2 liblerc4 libmagic-mgc libmagic1t64
  libmath-tamuanova-perl libmpfi0 libnetpbm11t64 libopenjp2-7 libpaper-utils
  libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16t64
  libpotrace0 libptexenc1 libpython3-stdlib libpython3.12-minimal
  libpython3.12-stdlib libsharpyuv0 libsigsegv2 libsm6 libsynctex2
  libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53-5 libtiff6 libtool
  libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4
  libxrender1 libxt6t64 libzzip-0-13t64 m4 man-db media-types netbase netpbm
  po-debconf poppler-data preview-latex-style python3 python3-minimal
  python3.12 python3.12-minimal sensible-utils t1utils tex-common texlive-base
  texlive-binaries texlive-fonts-recommended texlive-lang-french
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-pictures tzdata ucf x11-common xdg-utils xfonts-encodings
  xfonts-utils
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make xfig fonts-freefont-otf
  | fonts-freefont-ttf fonts-texgyre gawk-doc gettext-doc libasprintf-dev
  libgettextpo-dev groff liblapack-doc libavalon-framework-java
  libexcalibur-logkit-java liblog4j1.2-java cups-common low-memory-monitor
  gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user
  liblcms2-utils libmpfi-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
  m4-doc apparmor less www-browser libmail-box-perl poppler-utils
  fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic
  | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum
  python3-doc python3-tk python3-venv python3.12-venv python3.12-doc
  binfmt-support perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2
  hintview texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex
  python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc
  texlive-science texlive-latex-recommended-doc texlive-luatex
  texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex
Recommended packages:
  curl | wget | lynx inkscape dbus libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs fonts-droid-fallback krb5-locales libltdl-dev
  libmail-sendmail-perl ca-certificates lmodern dvisvgm tex-gyre tipa
  default-jre libspreadsheet-parseexcel-perl texlive-plain-generic ruby tk
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bash-completion bsdextrautils
  debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot fig2dev file
  fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base
  ghostscript groff-base intltool-debian latex-make libapache-pom-java
  libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3
  libblas-dev libblas3 libbrotli1 libcairo2 libcom-err2
  libcommons-logging-java libcommons-parent-java libcups2t64 libdbus-1-3
  libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfakeroot
  libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1
  libfreetype6 libglib2.0-0t64 libgraphite2-3 libgs-common libgs10
  libgs10-common libgsl-dev libgsl28 libgslcblas0 libgssapi-krb5-2
  libharfbuzz0b libice6 libicu72 libidn12 libijs-0.35 libjbig0 libjbig2dec0
  libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3
  libkrb5support0 liblcms2-2 liblerc4 libmagic-mgc libmagic1t64
  libmath-tamuanova-perl libmpfi0 libnetpbm11t64 libopenjp2-7 libpaper-utils
  libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16t64
  libpotrace0 libptexenc1 libpython3-stdlib libpython3.12-minimal
  libpython3.12-stdlib libsharpyuv0 libsigsegv2 libsm6 libsynctex2
  libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53-5 libtiff6 libtool
  libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4
  libxrender1 libxt6t64 libzzip-0-13t64 m4 man-db media-types netbase netpbm
  po-debconf poppler-data preview-latex-style python3 python3-minimal
  python3.12 python3.12-minimal sbuild-build-depends-main-dummy sensible-utils
  t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended
  texlive-lang-french texlive-latex-base texlive-latex-extra
  texlive-latex-recommended texlive-pictures tzdata ucf x11-common xdg-utils
  xfonts-encodings xfonts-utils
0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded.
Need to get 252 MB/252 MB of archives.
After this operation, 675 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [984 B]
Get:2 file:/srv/reprepro perl-5.40/main amd64 libmath-tamuanova-perl amd64 1.0.2-4+b2 [13.9 kB]
Get:3 http://deb.debian.org/debian unstable/main amd64 libsigsegv2 amd64 2.14-1+b1 [34.3 kB]
Get:4 http://deb.debian.org/debian unstable/main amd64 gawk amd64 1:5.2.1-2+b1 [674 kB]
Get:5 http://deb.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB]
Get:6 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.4-3 [812 kB]
Get:7 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB]
Get:8 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.4-3 [2137 kB]
Get:9 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.4-1 [26.5 kB]
Get:10 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB]
Get:11 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get:12 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB]
Get:13 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.4-3 [1950 kB]
Get:14 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.4-3 [664 kB]
Get:15 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.4-1 [9500 B]
Get:16 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.4-1 [27.6 kB]
Get:17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get:18 http://deb.debian.org/debian unstable/main amd64 bash-completion all 1:2.14.0-1 [305 kB]
Get:19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB]
Get:20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB]
Get:21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB]
Get:22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB]
Get:23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB]
Get:24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB]
Get:25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-1 [96.1 kB]
Get:26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB]
Get:27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB]
Get:28 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB]
Get:29 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB]
Get:30 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB]
Get:31 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:32 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:33 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB]
Get:34 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB]
Get:35 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB]
Get:36 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:37 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:38 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:39 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:40 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB]
Get:41 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:42 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB]
Get:43 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB]
Get:44 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB]
Get:45 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:46 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:47 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB]
Get:48 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB]
Get:49 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB]
Get:50 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB]
Get:51 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB]
Get:52 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB]
Get:53 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB]
Get:54 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB]
Get:55 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get:56 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB]
Get:57 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get:58 http://deb.debian.org/debian unstable/main amd64 libgs-common all 10.03.1~dfsg-2 [148 kB]
Get:59 http://deb.debian.org/debian unstable/main amd64 libgs10-common all 10.03.1~dfsg-2 [474 kB]
Get:60 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB]
Get:61 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB]
Get:62 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB]
Get:63 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB]
Get:64 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB]
Get:65 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB]
Get:66 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB]
Get:67 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B]
Get:68 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB]
Get:69 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB]
Get:70 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.10-1 [249 kB]
Get:71 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB]
Get:72 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB]
Get:73 http://deb.debian.org/debian unstable/main amd64 libidn12 amd64 1.42-2 [80.4 kB]
Get:74 http://deb.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-15.1+b1 [15.1 kB]
Get:75 http://deb.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b2 [64.3 kB]
Get:76 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB]
Get:77 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB]
Get:78 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB]
Get:79 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB]
Get:80 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB]
Get:81 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB]
Get:82 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB]
Get:83 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB]
Get:84 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB]
Get:85 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB]
Get:86 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB]
Get:87 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB]
Get:88 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB]
Get:89 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB]
Get:90 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB]
Get:91 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB]
Get:92 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB]
Get:93 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB]
Get:94 http://deb.debian.org/debian unstable/main amd64 libgs10 amd64 10.03.1~dfsg-2 [2543 kB]
Get:95 http://deb.debian.org/debian unstable/main amd64 ghostscript amd64 10.03.1~dfsg-2 [50.2 kB]
Get:96 http://deb.debian.org/debian unstable/main amd64 libnetpbm11t64 amd64 2:11.07.00-2 [182 kB]
Get:97 http://deb.debian.org/debian unstable/main amd64 netpbm amd64 2:11.07.00-2 [2061 kB]
Get:98 http://deb.debian.org/debian unstable/main amd64 fig2dev amd64 1:3.2.9-4 [444 kB]
Get:99 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB]
Get:100 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.18 [32.5 kB]
Get:101 http://deb.debian.org/debian unstable/main amd64 latex-make all 2.4.3-1 [1030 kB]
Get:102 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 29-2 [5276 B]
Get:103 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB]
Get:104 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-3 [159 kB]
Get:105 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB]
Get:106 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB]
Get:107 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB]
Get:108 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB]
Get:109 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB]
Get:110 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB]
Get:111 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB]
Get:112 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB]
Get:113 http://deb.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB]
Get:114 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.80.4-1 [1486 kB]
Get:115 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB]
Get:116 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-3 [116 kB]
Get:117 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-3 [994 kB]
Get:118 http://deb.debian.org/debian unstable/main amd64 libgsl-dev amd64 2.8+dfsg-3 [1223 kB]
Get:119 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB]
Get:120 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-4 [157 kB]
Get:121 http://deb.debian.org/debian unstable/main amd64 libtamuanova-0.2 amd64 0.2-5+b3 [9228 B]
Get:122 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-3 [35.1 kB]
Get:123 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b1 [9176 B]
Get:124 http://deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB]
Get:125 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b1 [25.2 kB]
Get:126 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-4 [49.1 kB]
Get:127 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-4 [62.5 kB]
Get:128 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1 [339 kB]
Get:129 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB]
Get:130 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-4 [114 kB]
Get:131 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB]
Get:132 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB]
Get:133 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB]
Get:134 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB]
Get:135 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.3 [56.2 kB]
Get:136 http://deb.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1 [350 kB]
Get:137 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:138 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2024.20240313.70630+ds-4 [8493 kB]
Get:139 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:140 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2024.20240706-1 [22.7 MB]
Get:141 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-recommended all 2024.20240706-1 [4992 kB]
Get:142 http://deb.debian.org/debian unstable/main amd64 texlive-lang-french all 2024.20240706-2 [95.8 MB]
Get:143 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2024.20240706-1 [1274 kB]
Get:144 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2024.20240706-1 [8847 kB]
Get:145 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2024.20240706-1 [17.0 MB]
Get:146 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2024.20240706-2 [20.0 MB]
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Setting up libmagic1t64:amd64 (1:5.45-3) ...
Setting up x11-common (1:7.7+23.1) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libdeflate0:amd64 (1.20-1) ...
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Setting up tzdata (2024a-4) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Fri Aug  2 11:45:01 UTC 2024.
Universal Time is now:  Fri Aug  2 11:45:01 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up fakeroot (1.35.1-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
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Setting up autotools-dev (20220109.1) ...
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No schema files found: doing nothing.
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update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
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Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ...
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Setting up netbase (6.4) ...

Configuration file '/etc/protocols'
 ==> File on system created by you or by a script.
 ==> File also in package provided by package maintainer.
 ==> Using current old file as you requested.

Configuration file '/etc/services'
 ==> File on system created by you or by a script.
 ==> File also in package provided by package maintainer.
 ==> Using current old file as you requested.
Setting up libkrb5-3:amd64 (1.21.3-3) ...
Setting up libgsl28:amd64 (2.8+dfsg-3) ...
Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libblas-dev:amd64 (3.12.0-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
Setting up libsynctex2:amd64 (2024.20240313.70630+ds-4) ...
Setting up libpotrace0:amd64 (1.16-2+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libice6:amd64 (2:1.0.10-1+b1) ...
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Setting up libpdfbox-java (1:1.8.16-5) ...
Setting up libpython3.12-stdlib:amd64 (3.12.4-3) ...
Setting up libxpm4:amd64 (1:3.5.17-1+b1) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ...
Setting up libtool (2.4.7-7) ...
Setting up python3.12 (3.12.4-3) ...
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Setting up libavahi-common3:amd64 (0.8-13+b2) ...
Setting up libcommons-logging-java (1.3.0-1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libptexenc1:amd64 (2024.20240313.70630+ds-4) ...
Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ...
Setting up ucf (3.0043+nmu1) ...
Setting up netpbm (2:11.07.00-2) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up libtamuanova-0.2 (0.2-5+b3) ...
Setting up groff-base (1.23.0-5) ...
Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ...
Setting up libsm6:amd64 (2:1.2.3-1+b1) ...
Setting up libavahi-client3:amd64 (0.8-13+b2) ...
Setting up libpython3-stdlib:amd64 (3.12.4-1) ...
Setting up libpaper1:amd64 (1.1.29+b1) ...

Creating config file /etc/papersize with new version
Setting up libxi6:amd64 (2:1.8.1-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3 (3.12.4-1) ...
Setting up libpaper-utils (1.1.29+b1) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.12.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up tex-common (6.18) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libmath-tamuanova-perl (1.0.2-4+b2) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2) ...
Setting up latex-make (2.4.3-1) ...
Setting up libcups2t64:amd64 (2.4.10-1) ...
Setting up libxmu6:amd64 (2:1.1.3-3+b2) ...
Setting up preview-latex-style (13.2-1) ...
Setting up debhelper (13.16) ...
Setting up libxaw7:amd64 (2:1.0.14-1+b2) ...
Setting up fonts-urw-base35 (20200910-8) ...
Setting up libgs10-common (10.03.1~dfsg-2) ...
Setting up fontconfig-config (2.15.0-1.1) ...
Setting up libfontconfig1:amd64 (2.15.0-1.1) ...
Setting up libgs10:amd64 (10.03.1~dfsg-2) ...
Setting up ghostscript (10.03.1~dfsg-2) ...
Setting up fig2dev (1:3.2.9-4) ...
Setting up libcairo2:amd64 (1.18.0-3+b1) ...
Setting up texlive-binaries (2024.20240313.70630+ds-4) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up texlive-base (2024.20240706-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up texlive-lang-french (2024.20240706-2) ...
Setting up texlive-latex-base (2024.20240706-1) ...
Setting up texlive-latex-recommended (2024.20240706-1) ...
Setting up texlive-pictures (2024.20240706-1) ...
Setting up texlive-fonts-recommended (2024.20240706-1) ...
Setting up texlive-latex-extra (2024.20240706-2) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.39-6) ...
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64)
Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1
Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.4 base-passwd_3.6.4 bash_5.2.21-2.1 bash-completion_1:2.14.0-1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-1 bsdutils_1:2.40.2-1 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 fig2dev_1:3.2.9-4 file_1:5.45-3 findutils_4.10.0-2 fontconfig-config_2.15.0-1.1 fonts-lmodern_2.005-1 fonts-urw-base35_20200910-8 g++_4:14.1.0-2 g++-13_13.3.0-4 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: altree
Binary: altree, altree-examples
Architecture: any all
Version: 1.3.2-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>, Vincent Danjean <vdanjean@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://gitlab.inria.fr/NGS/ALTree
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/altree
Vcs-Git: https://salsa.debian.org/med-team/altree.git
Testsuite: autopkgtest
Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev
Package-List:
 altree deb science optional arch=any
 altree-examples deb science optional arch=all
Checksums-Sha1:
 095d136e5ffbeeb2f0e0da550a8a06e8ff5ca7f0 610823 altree_1.3.2.orig.tar.gz
 7aa27b7775707a6660381ef03fb78757f33929b2 7196 altree_1.3.2-2.debian.tar.xz
Checksums-Sha256:
 f9d5beda91aaab219e1397b4c19e0649788a871c8c29fa1e8343a53c5f710b8e 610823 altree_1.3.2.orig.tar.gz
 1747f795ec12019cdb81c42b9205d0cbdedd8a735df8a653d52ebf0a1f1cec29 7196 altree_1.3.2-2.debian.tar.xz
Files:
 fd17066d7f6bc07baacf526ff3ee1c3b 610823 altree_1.3.2.orig.tar.gz
 9812f8181ed7dc8647d1ae8d78a7f09a 7196 altree_1.3.2-2.debian.tar.xz

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gpgv: Signature made Wed Nov 29 13:01:25 2023 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./altree_1.3.2-2.dsc: no acceptable signature found
dpkg-source: info: extracting altree in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking altree_1.3.2.orig.tar.gz
dpkg-source: info: unpacking altree_1.3.2-2.debian.tar.xz

Check disk space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 1.3.2-2+b4

+------------------------------------------------------------------------------+
| Starting Timed Build Commands                                                |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network altree_1.3.2-2 perl-5.40 amd64
-----------------------------------------------------------------------------------------------------


I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network altree_1.3.2-2 perl-5.40 amd64'.

Finished processing commands.
--------------------------------------------------------------------------------

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LANGUAGE=en_GB:en
LC_ALL=C.UTF-8
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
LOGNAME=debomatic
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SCHROOT_ALIAS_NAME=perl-5.40-amd64-debomatic
SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic
SCHROOT_COMMAND=env
SCHROOT_GID=110
SCHROOT_GROUP=sbuild
SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-905b0ad0-dbc7-4adf-ad7f-383dd2faaaaa
SCHROOT_UID=1002
SCHROOT_USER=debomatic
SHELL=/bin/sh
USER=debomatic

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -mDebian Perl autobuilder <perl@packages.debian.org> -B -rfakeroot -Zxz
dpkg-buildpackage: info: source package altree
dpkg-buildpackage: info: source version 1.3.2-2+b4
dpkg-buildpackage: info: source distribution perl-5.40
 dpkg-source -Zxz --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C Documentation distclean || true
make[2]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[2]: Nothing to be done for 'distclean'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro"
Checking if your kit is complete...
Warning: the following files are missing in your kit:
	CUtils/c_sources/MYMETA.json
	CUtils/MYMETA.json
	MYMETA.json
Please inform the author.
MakeMaker (v7.70)
Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib'
Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib'
Generating a Unix-style Makefile
Writing Makefile for ALTree::CUtils
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for ALTree::CUtils
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for altree
Writing MYMETA.yml and MYMETA.json
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C Documentation pdf
make[2]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE
make[3]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
         ======> building  manual.pdf <======
Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}'
Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36.
Package texdepends Warning: Diverting empty macro 'Ginclude@eps' 
(texdepends)                Probably a bug in texdepends.sty.
Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87.
Chapter 1.
LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121.
Package texdepends Warning: No 'fig/overview.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 124.
Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 124.
LaTeX Warning: Reference `fig:nesting_algo' on page 2 undefined on input line 143.
Package natbib Warning: Citation `Bardel05' on page 2 undefined on input line 143.
Package natbib Warning: Citation `Ge03' on page 2 undefined on input line 146.
Package natbib Warning: Citation `Becker04' on page 2 undefined on input line 146.
Package texdepends Warning: No 'fig/altree-q.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 150.
Package texdepends Warning: Figure 'fig/altree-q.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 150.
LaTeX Warning: `h' float specifier changed to `ht'.
Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180.
Package natbib Warning: Citation `Stephens01' on page 5 undefined on input line 197.
Package natbib Warning: Citation `Stephens03' on page 5 undefined on input line 197.
Package natbib Warning: Citation `Becker04' on page 5 undefined on input line 198.
Package natbib Warning: Citation `Swofford02' on page 5 undefined on input line 199.
Package natbib Warning: Citation `Felsenstein04' on page 5 undefined on input line 200.
Package natbib Warning: Citation `YangPAML' on page 5 undefined on input line 200.
Underfull \hbox (badness 1454) in paragraph at lines 196--201
[]\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10.
Chapter 2.
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Chapter 1.
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Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36.
Package texdepends Warning: Diverting empty macro 'Ginclude@eps' 
(texdepends)                Probably a bug in texdepends.sty.
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Chapter 1.
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[]\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10.
Chapter 2.
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Chapter 3.
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Chapter 4.
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\T1/ptm/m/n/10.95 Examples: $[]$ $[]$ 
Chapter 5.
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[]|\T1/pcr/m/n/10.95 --data-qual|-q
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[]|\T1/pcr/m/n/10.95 --tree-building-program|-p
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[]|\T1/pcr/m/n/10.95 --s-site-characters
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[][] 
Chapter 6.
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\T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti
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[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run 
Chapter 7.
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/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE
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*** Checking rebuild with rule 'latex'
*** Checking rebuild with rule 'texdepends'
/usr/bin/make LU_REC_LEVEL=5 manual.pdf
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dh_auto_build
	make -j2
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm
cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm
cp ALTree/Base.pm blib/lib/ALTree/Base.pm
cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm
cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm
cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm
cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm
cp ALTree/Input.pm blib/lib/ALTree/Input.pm
cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm
cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm
cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm
cp ALTree/Node.pm blib/lib/ALTree/Node.pm
cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm
cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm
cp ALTree/Import.pm blib/lib/ALTree/Import.pm
cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm
cp ALTree/Site.pm blib/lib/ALTree/Site.pm
cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm
make -C c_sources 
make[4]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
x86_64-linux-gnu-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE"   chisq.c
cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm
AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils)
Running Mkbootstrap for CUtils ()
chmod 644 "CUtils.bs"
"/usr/bin/perl" "/usr/share/perl/5.40.0/ExtUtils/xsubpp"  -typemap '/usr/share/perl/5.40/ExtUtils/typemap'  CUtils.xs > CUtils.xsc
x86_64-linux-gnu-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE"   double_permutation.c
Please specify prototyping behavior for CUtils.xs (see perlxs manual)
mv CUtils.xsc CUtils.c
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
x86_64-linux-gnu-gcc -c  -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE"   CUtils.c
In function ‘pval_min’,
    inlined from ‘double_permutation’ at double_permutation.c:182:19:
double_permutation.c:125:20: warning: ‘*(datatype_t *)local’ may be used uninitialized [-Wmaybe-uninitialized]
  125 |         datatype_t ret=rep[0];
      |                    ^~~
x86_64-linux-gnu-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE"   fisher.c
x86_64-linux-gnu-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE"   mt19937ar.c
x86_64-linux-gnu-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE"   myrand.c
x86_64-linux-gnu-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE"   resampling.c
x86_64-linux-gnu-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE"   rhyper.c
x86_64-linux-gnu-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE"   stats.c
x86_64-linux-gnu-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE"   z.c
z.c:12:13: warning: ‘sccsfid’ defined but not used [-Wunused-variable]
   12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85";
      |             ^~~~~~~
ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o
: libaltree-cutils.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
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rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so
x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro  -shared -L/usr/local/lib -fstack-protector-strong  CUtils.o  -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \
   -lm -lpthread -lgsl -lblas   \
  
chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so
Manifying 1 pod document
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cp progs/altree blib/script/altree
cp progs/altree-add-S blib/script/altree-add-S
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S
cp progs/altree-convert blib/script/altree-convert
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert
Manifying 3 pod documents
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   dh_auto_test -a
	make -j2 test TEST_VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
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Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
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make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
No tests defined for ALTree::CUtils extension.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t
t/ALTree-CUtils.t ....... 
1..1
ok 1 - use ALTree::CUtils;
ok
t/double_permutation.t .. 
1..3
ok 1 - use ALTree::CUtils;
ok 2 - undef when bad args
ok 3 - double_permutation
ok
All tests successful.
Files=2, Tests=4,  0 wallclock secs ( 0.02 usr  0.01 sys +  0.10 cusr  0.02 csys =  0.15 CPU)
Result: PASS
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/ALTree.t .. 
1..1
ok 1 - use ALTree::Import;
ok
All tests successful.
Files=1, Tests=1,  0 wallclock secs ( 0.02 usr  0.00 sys +  0.09 cusr  0.00 csys =  0.11 CPU)
Result: PASS
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
	make -j2 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
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Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
Manifying 3 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/CUtils.so
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Sens.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Input.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Foret.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Tree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/SiteSensPerForet.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Site.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Node.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/SitePerForet.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Import.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Base.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/SitePerTree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/SiteSens.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/CUtils.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/SiteCollection.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/to_rewrite.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Chi2.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/SiteSensPerTree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Utils.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Nanova.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/autosplit.ix
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree-add-S.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree-convert.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree-add-S
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree-convert
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib64/ld-linux-x86-64.so.2
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/CUtils.so was not linked against libblas.so.3 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.2-2+b4_amd64.deb'.
dpkg-deb: building package 'altree' in '../altree_1.3.2-2+b4_amd64.deb'.
 dpkg-genbuildinfo --build=any -O../altree_1.3.2-2+b4_amd64.buildinfo
 dpkg-genchanges --build=any -mDebian Perl autobuilder <perl@packages.debian.org> -O../altree_1.3.2-2+b4_amd64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source -Zxz --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-08-02T11:46:05Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


altree_1.3.2-2+b4_amd64.changes:
--------------------------------

Format: 1.8
Date: Fri, 02 Aug 2024 11:45:53 +0000
Source: altree (1.3.2-2)
Binary: altree altree-dbgsym
Binary-Only: yes
Architecture: amd64
Version: 1.3.2-2+b4
Distribution: perl-5.40
Urgency: low
Maintainer: Debian Perl autobuilder <perl@packages.debian.org>
Changed-By: Debian Perl autobuilder <perl@packages.debian.org>
Description:
 altree     - program to perform phylogeny-based association and localization a
Changes:
 altree (1.3.2-2+b4) perl-5.40; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for amd64; no source changes.
   * Rebuild for Perl 5.40
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Files:
 f8bf698a4ce23538a1678bd58bdd18cc 349484 debug optional altree-dbgsym_1.3.2-2+b4_amd64.deb
 960f1fe77f475457c16ec2e7ac092dba 9181 science optional altree_1.3.2-2+b4_amd64.buildinfo
 0e1260ecfd0f265a554d56e1ca4061e0 345344 science optional altree_1.3.2-2+b4_amd64.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: altree (1.3.2-2)
Binary: altree altree-dbgsym
Architecture: amd64
Version: 1.3.2-2+b4
Binary-Only-Changes:
 altree (1.3.2-2+b4) perl-5.40; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for amd64; no source changes.
   * Rebuild for Perl 5.40
 .
  -- Debian Perl autobuilder <perl@packages.debian.org>  Fri, 02 Aug 2024 11:45:53 +0000
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Fri, 02 Aug 2024 11:46:04 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
 usr-local-has-programs
Installed-Build-Depends:
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.22.5-2),
 autotools-dev (= 20220109.1),
 base-files (= 13.4),
 base-passwd (= 3.6.4),
 bash (= 5.2.21-2.1),
 bash-completion (= 1:2.14.0-1),
 binutils (= 2.42.90.20240720-2),
 binutils-common (= 2.42.90.20240720-2),
 binutils-x86-64-linux-gnu (= 2.42.90.20240720-2),
 bsdextrautils (= 2.40.2-1),
 bsdutils (= 1:2.40.2-1),
 build-essential (= 12.10),
 bzip2 (= 1.0.8-5.1),
 coreutils (= 9.4-3.1),
 cpp (= 4:14.1.0-2),
 cpp-13 (= 13.3.0-4),
 cpp-13-x86-64-linux-gnu (= 13.3.0-4),
 cpp-14 (= 14.2.0-1),
 cpp-14-x86-64-linux-gnu (= 14.2.0-1),
 cpp-x86-64-linux-gnu (= 4:14.1.0-2),
 dash (= 0.5.12-9),
 debconf (= 1.5.87),
 debhelper (= 13.16),
 debianutils (= 5.20),
 dh-autoreconf (= 20),
 dh-strip-nondeterminism (= 1.14.0-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.11),
 dpkg-dev (= 1.22.11),
 dwz (= 0.15-1+b1),
 fig2dev (= 1:3.2.9-4),
 file (= 1:5.45-3),
 findutils (= 4.10.0-2),
 fontconfig-config (= 2.15.0-1.1),
 fonts-lmodern (= 2.005-1),
 fonts-urw-base35 (= 20200910-8),
 g++ (= 4:14.1.0-2),
 g++-14 (= 14.2.0-1),
 g++-14-x86-64-linux-gnu (= 14.2.0-1),
 g++-x86-64-linux-gnu (= 4:14.1.0-2),
 gawk (= 1:5.2.1-2+b1),
 gcc (= 4:14.1.0-2),
 gcc-13 (= 13.3.0-4),
 gcc-13-base (= 13.3.0-4),
 gcc-13-x86-64-linux-gnu (= 13.3.0-4),
 gcc-14 (= 14.2.0-1),
 gcc-14-base (= 14.2.0-1),
 gcc-14-x86-64-linux-gnu (= 14.2.0-1),
 gcc-x86-64-linux-gnu (= 4:14.1.0-2),
 gettext (= 0.22.5-2),
 gettext-base (= 0.22.5-2),
 ghostscript (= 10.03.1~dfsg-2),
 grep (= 3.11-4),
 groff-base (= 1.23.0-5),
 gzip (= 1.12-1.1),
 hostname (= 3.23+nmu2),
 init-system-helpers (= 1.66),
 intltool-debian (= 0.35.0+20060710.6),
 latex-make (= 2.4.3-1),
 libacl1 (= 2.3.2-2),
 libapache-pom-java (= 29-2),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 14.2.0-1),
 libatomic1 (= 14.2.0-1),
 libattr1 (= 1:2.5.2-1),
 libaudit-common (= 1:3.1.2-4),
 libaudit1 (= 1:3.1.2-4+b1),
 libavahi-client3 (= 0.8-13+b2),
 libavahi-common-data (= 0.8-13+b2),
 libavahi-common3 (= 0.8-13+b2),
 libbinutils (= 2.42.90.20240720-2),
 libblas-dev (= 3.12.0-3),
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 libblkid1 (= 2.40.2-1),
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 libbsd0 (= 0.12.2-1),
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 libc-bin (= 2.39-6),
 libc-dev-bin (= 2.39-6),
 libc6 (= 2.39-6),
 libc6-dev (= 2.39-6),
 libcairo2 (= 1.18.0-3+b1),
 libcap-ng0 (= 0.8.5-1+b1),
 libcap2 (= 1:2.66-5),
 libcc1-0 (= 14.2.0-1),
 libcom-err2 (= 1.47.1-1),
 libcommons-logging-java (= 1.3.0-1),
 libcommons-parent-java (= 56-1),
 libcrypt-dev (= 1:4.4.36-4),
 libcrypt1 (= 1:4.4.36-4),
 libctf-nobfd0 (= 2.42.90.20240720-2),
 libctf0 (= 2.42.90.20240720-2),
 libcups2t64 (= 2.4.10-1),
 libdb5.3t64 (= 5.3.28+dfsg2-7),
 libdbus-1-3 (= 1.14.10-4+b1),
 libdebconfclient0 (= 0.272),
 libdebhelper-perl (= 13.16),
 libdeflate0 (= 1.20-1),
 libdpkg-perl (= 1.22.11),
 libelf1t64 (= 0.191-2),
 libexpat1 (= 2.6.2-1),
 libffi8 (= 3.4.6-1),
 libfile-stripnondeterminism-perl (= 1.14.0-1),
 libfontbox-java (= 1:1.8.16-5),
 libfontconfig1 (= 2.15.0-1.1),
 libfontenc1 (= 1:1.1.8-1),
 libfreetype6 (= 2.13.2+dfsg-1+b4),
 libgcc-13-dev (= 13.3.0-4),
 libgcc-14-dev (= 14.2.0-1),
 libgcc-s1 (= 14.2.0-1),
 libgdbm-compat4t64 (= 1.23-6),
 libgdbm6t64 (= 1.23-6),
 libglib2.0-0t64 (= 2.80.4-1),
 libgmp10 (= 2:6.3.0+dfsg-2+b1),
 libgnutls30t64 (= 3.8.6-2),
 libgomp1 (= 14.2.0-1),
 libgprofng0 (= 2.42.90.20240720-2),
 libgraphite2-3 (= 1.3.14-2),
 libgs-common (= 10.03.1~dfsg-2),
 libgs10 (= 10.03.1~dfsg-2),
 libgs10-common (= 10.03.1~dfsg-2),
 libgsl-dev (= 2.8+dfsg-3),
 libgsl28 (= 2.8+dfsg-3),
 libgslcblas0 (= 2.8+dfsg-3),
 libgssapi-krb5-2 (= 1.21.3-3),
 libharfbuzz0b (= 8.3.0-2+b1),
 libhogweed6t64 (= 3.10-1),
 libhwasan0 (= 14.2.0-1),
 libice6 (= 2:1.0.10-1+b1),
 libicu72 (= 72.1-5),
 libidn12 (= 1.42-2),
 libidn2-0 (= 2.3.7-2),
 libijs-0.35 (= 0.35-15.1+b1),
 libisl23 (= 0.26-3+b2),
 libitm1 (= 14.2.0-1),
 libjansson4 (= 2.14-2+b2),
 libjbig0 (= 2.1-6.1+b1),
 libjbig2dec0 (= 0.20-1+b2),
 libjpeg62-turbo (= 1:2.1.5-3),
 libk5crypto3 (= 1.21.3-3),
 libkeyutils1 (= 1.6.3-3),
 libkpathsea6 (= 2024.20240313.70630+ds-4),
 libkrb5-3 (= 1.21.3-3),
 libkrb5support0 (= 1.21.3-3),
 liblcms2-2 (= 2.14-2+b1),
 liblerc4 (= 4.0.0+ds-4+b1),
 liblsan0 (= 14.2.0-1),
 liblzma5 (= 5.6.2-2),
 libmagic-mgc (= 1:5.45-3),
 libmagic1t64 (= 1:5.45-3),
 libmath-tamuanova-perl (= 1.0.2-4+b2),
 libmd0 (= 1.1.0-2),
 libmount1 (= 2.40.2-1),
 libmpc3 (= 1.3.1-1+b2),
 libmpfi0 (= 1.5.4+ds-3),
 libmpfr6 (= 4.2.1-1+b1),
 libncursesw6 (= 6.5-2),
 libnetpbm11t64 (= 2:11.07.00-2),
 libnettle8t64 (= 3.10-1),
 libopenjp2-7 (= 2.5.0-2+b3),
 libp11-kit0 (= 0.25.5-2),
 libpam-modules (= 1.5.3-7),
 libpam-modules-bin (= 1.5.3-7),
 libpam-runtime (= 1.5.3-7),
 libpam0g (= 1.5.3-7),
 libpaper-utils (= 1.1.29+b1),
 libpaper1 (= 1.1.29+b1),
 libpcre2-8-0 (= 10.42-4+b1),
 libpdfbox-java (= 1:1.8.16-5),
 libperl5.40 (= 5.40.0-1),
 libpipeline1 (= 1.5.7-2),
 libpixman-1-0 (= 0.42.2-1+b1),
 libpng16-16t64 (= 1.6.43-5),
 libpotrace0 (= 1.16-2+b1),
 libptexenc1 (= 2024.20240313.70630+ds-4),
 libpython3-stdlib (= 3.12.4-1),
 libpython3.12-minimal (= 3.12.4-3),
 libpython3.12-stdlib (= 3.12.4-3),
 libquadmath0 (= 14.2.0-1),
 libreadline8t64 (= 8.2-4),
 libseccomp2 (= 2.5.5-1+b1),
 libselinux1 (= 3.5-2+b3),
 libsframe1 (= 2.42.90.20240720-2),
 libsharpyuv0 (= 1.4.0-0.1),
 libsigsegv2 (= 2.14-1+b1),
 libsm6 (= 2:1.2.3-1+b1),
 libsmartcols1 (= 2.40.2-1),
 libsqlite3-0 (= 3.46.0-1),
 libssl3t64 (= 3.2.2-1),
 libstdc++-14-dev (= 14.2.0-1),
 libstdc++6 (= 14.2.0-1),
 libsynctex2 (= 2024.20240313.70630+ds-4),
 libsystemd0 (= 256.4-2),
 libtamuanova-0.2 (= 0.2-5+b3),
 libtasn1-6 (= 4.19.0-3+b2),
 libteckit0 (= 2.5.12+ds1-1),
 libtest-deep-perl (= 1.204-1),
 libtexlua53-5 (= 2024.20240313.70630+ds-4),
 libtiff6 (= 4.5.1+git230720-4),
 libtinfo6 (= 6.5-2),
 libtool (= 2.4.7-7),
 libtsan2 (= 14.2.0-1),
 libubsan1 (= 14.2.0-1),
 libuchardet0 (= 0.0.8-1+b1),
 libudev1 (= 256.4-2),
 libunistring5 (= 1.2-1),
 libuuid1 (= 2.40.2-1),
 libwebp7 (= 1.4.0-0.1),
 libx11-6 (= 2:1.8.7-1+b1),
 libx11-data (= 2:1.8.7-1),
 libxau6 (= 1:1.0.9-1+b1),
 libxaw7 (= 2:1.0.14-1+b2),
 libxcb-render0 (= 1.17.0-2),
 libxcb-shm0 (= 1.17.0-2),
 libxcb1 (= 1.17.0-2),
 libxdmcp6 (= 1:1.1.2-3+b1),
 libxext6 (= 2:1.3.4-1+b1),
 libxi6 (= 2:1.8.1-1),
 libxml2 (= 2.12.7+dfsg-3+b1),
 libxmu6 (= 2:1.1.3-3+b2),
 libxpm4 (= 1:3.5.17-1+b1),
 libxrender1 (= 1:0.9.10-1.1+b1),
 libxt6t64 (= 1:1.2.1-1.2),
 libzstd1 (= 1.5.6+dfsg-1),
 libzzip-0-13t64 (= 0.13.72+dfsg.1-1.3),
 linux-libc-dev (= 6.9.12-1),
 m4 (= 1.4.19-4),
 make (= 4.3-4.1),
 man-db (= 2.12.1-2),
 mawk (= 1.3.4.20240622-2),
 media-types (= 10.1.0),
 ncurses-base (= 6.5-2),
 ncurses-bin (= 6.5-2),
 netbase (= 6.4),
 netpbm (= 2:11.07.00-2),
 patch (= 2.7.6-7),
 perl (= 5.40.0-1),
 perl-base (= 5.40.0-1),
 perl-modules-5.40 (= 5.40.0-1),
 po-debconf (= 1.0.21+nmu1),
 poppler-data (= 0.4.12-1),
 preview-latex-style (= 13.2-1),
 python3 (= 3.12.4-1),
 python3-minimal (= 3.12.4-1),
 python3.12 (= 3.12.4-3),
 python3.12-minimal (= 3.12.4-3),
 readline-common (= 8.2-4),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.24),
 sysvinit-utils (= 3.09-2),
 t1utils (= 1.41-4),
 tar (= 1.35+dfsg-3),
 tex-common (= 6.18),
 texlive-base (= 2024.20240706-1),
 texlive-binaries (= 2024.20240313.70630+ds-4),
 texlive-fonts-recommended (= 2024.20240706-1),
 texlive-lang-french (= 2024.20240706-2),
 texlive-latex-base (= 2024.20240706-1),
 texlive-latex-extra (= 2024.20240706-2),
 texlive-latex-recommended (= 2024.20240706-1),
 texlive-pictures (= 2024.20240706-1),
 tzdata (= 2024a-4),
 ucf (= 3.0043+nmu1),
 usr-is-merged (= 39),
 util-linux (= 2.40.2-1),
 x11-common (= 1:7.7+23.1),
 xdg-utils (= 1.1.3-4.1),
 xfonts-encodings (= 1:1.0.4-2.2),
 xfonts-utils (= 1:7.7+6),
 xz-utils (= 5.6.2-2),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1)
Environment:
 DEB_BUILD_OPTIONS="parallel=2"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 LD_LIBRARY_PATH="/usr/lib/libeatmydata"
 SOURCE_DATE_EPOCH="1722599153"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


altree-dbgsym_1.3.2-2+b4_amd64.deb
----------------------------------

 new Debian package, version 2.0.
 size 349484 bytes: control archive=540 bytes.
     382 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: altree-dbgsym
 Source: altree (1.3.2-2)
 Version: 1.3.2-2+b4
 Auto-Built-Package: debug-symbols
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 357
 Depends: altree (= 1.3.2-2+b4)
 Section: debug
 Priority: optional
 Description: debug symbols for altree
 Build-Ids: 3029bee5a44137516642e858141acd051715dcf9

drwxr-xr-x root/root         0 2024-08-02 11:45 ./
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/debug/.build-id/30/
-rw-r--r-- root/root    355184 2024-08-02 11:45 ./usr/lib/debug/.build-id/30/29bee5a44137516642e858141acd051715dcf9.debug
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/share/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-08-02 11:45 ./usr/share/doc/altree-dbgsym -> altree


altree_1.3.2-2+b4_amd64.deb
---------------------------

 new Debian package, version 2.0.
 size 345344 bytes: control archive=1776 bytes.
     872 bytes,    17 lines      control
    2882 bytes,    36 lines      md5sums
 Package: altree
 Source: altree (1.3.2-2)
 Version: 1.3.2-2+b4
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 562
 Depends: libblas3 | libblas.so.3, libc6 (>= 2.38), libgsl28 (>= 2.8+dfsg), perl (>= 5.40.0-1), perlapi-5.40.0, libmath-tamuanova-perl
 Recommends: libopenblas0 | libblis4 | libmkl-rt | libblas.so.3
 Suggests: altree-examples
 Section: science
 Priority: optional
 Homepage: https://gitlab.inria.fr/NGS/ALTree
 Description: program to perform phylogeny-based association and localization analysis
  ALTree was designed to perform association detection and localization of
  susceptibility sites using haplotype phylogenetic trees: first, it allows the
  detection of an association between a candidate gene and a disease, and second,
  it enables to make hypothesis about the susceptibility loci.

drwxr-xr-x root/root         0 2024-08-02 11:45 ./
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/bin/
-rwxr-xr-x root/root     55855 2024-08-02 11:45 ./usr/bin/altree
-rwxr-xr-x root/root     15365 2024-08-02 11:45 ./usr/bin/altree-add-S
-rwxr-xr-x root/root     22801 2024-08-02 11:45 ./usr/bin/altree-convert
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/x86_64-linux-gnu/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/x86_64-linux-gnu/perl5/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/x86_64-linux-gnu/perl5/5.40/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/
-rw-r--r-- root/root       342 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Base.pm
-rw-r--r-- root/root      3081 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/CUtils.pm
-rw-r--r-- root/root      2897 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Chi2.pm
-rw-r--r-- root/root      2817 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Foret.pm
-rw-r--r-- root/root      2026 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Import.pm
-rw-r--r-- root/root     24521 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Input.pm
-rw-r--r-- root/root      2371 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Nanova.pm
-rw-r--r-- root/root      5965 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ALTree/Node.pm
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drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/ALTree/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/
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drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/share/doc/altree/
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-rw-r--r-- root/root    281049 2024-08-02 11:45 ./usr/share/doc/altree/manual.pdf
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/share/man/
drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/share/man/man1/
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drwxr-xr-x root/root         0 2024-08-02 11:45 ./usr/share/man/man3/
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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: any
Build-Space: 17924
Build-Time: 12
Distribution: perl-5.40
Host Architecture: amd64
Install-Time: 72
Job: /srv/debomatic/incoming/altree_1.3.2-2.dsc
Machine Architecture: amd64
Package: altree
Package-Time: 91
Source-Version: 1.3.2-2
Space: 17924
Status: successful
Version: 1.3.2-2+b4
--------------------------------------------------------------------------------
Finished at 2024-08-02T11:46:05Z
Build needed 00:01:31, 17924k disk space