sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | votca 2024-2 (amd64) Mon, 05 Aug 2024 04:34:22 +0000 | +==============================================================================+ Package: votca Version: 2024-2 Source Version: 2024-2 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-08a0453a-696f-4d36-b351-682a8ab7c03a' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup votca_2024-2 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup votca_2024-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/votca-tgfXp3/resolver-3J7qpW' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/votca_2024-2.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/votca-tgfXp3/votca-2024' with '<>' I: NOTICE: Log filtering will replace 'build/votca-tgfXp3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: bash-completion, clang-format, cmake, debhelper-compat (= 13), dh-python, gromacs (>= 2024~), libboost-all-dev, libecpint-dev, libeigen3-dev, libexpat-dev, libfftw3-dev, libgromacs-dev (>= 2024~), libgsl-dev, libhdf5-dev, libint2-dev, librdkit-dev, libsqlite3-dev, libxc-dev, pkgconf, pybind11-dev, python3-h5py, python3-lxml, python3-numpy, python3-pytest, python3-rdkit, python3:any, sphinx-common, txt2tags, build-essential, fakeroot, doxygen, gnuplot-nox | gnuplot, graphviz, pandoc, python3-ipykernel, python3-nbsphinx, python3-recommonmark, python3-sphinx, python3-sphinx-rtd-theme Filtered Build-Depends: bash-completion, clang-format, cmake, debhelper-compat (= 13), dh-python, gromacs (>= 2024~), libboost-all-dev, libecpint-dev, libeigen3-dev, libexpat-dev, libfftw3-dev, libgromacs-dev (>= 2024~), libgsl-dev, libhdf5-dev, libint2-dev, librdkit-dev, libsqlite3-dev, libxc-dev, pkgconf, pybind11-dev, python3-h5py, python3-lxml, python3-numpy, python3-pytest, python3-rdkit, python3:any, sphinx-common, txt2tags, build-essential, fakeroot, doxygen, gnuplot-nox, graphviz, pandoc, python3-ipykernel, python3-nbsphinx, python3-recommonmark, python3-sphinx, python3-sphinx-rtd-theme dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1174 B] Get:5 copy:/<>/apt_archive ./ Packages [1177 B] Fetched 2966 B in 0s (175 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: aglfn autoconf automake autopoint autotools-dev bash-completion bsdextrautils ca-certificates clang-format clang-format-16 cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common doxygen dwz fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-freefont-ttf fonts-lato fonts-mathjax gdb gettext gettext-base gfortran-13 gfortran-13-x86-64-linux-gnu gnuplot-data gnuplot-nox graphviz groff-base gromacs gromacs-data hdf5-helpers ibverbs-providers icu-devtools intltool-debian isa-support libabsl20230802 libaec-dev libaec0 libamd-comgr2 libamdhip64-5 libann0 libaom3 libarchive-zip-perl libarchive13t64 libavif16 libbabeltrace1 libblas3 libboost-all-dev libboost-atomic-dev libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-container-dev libboost-container1.83-dev libboost-container1.83.0 libboost-context-dev libboost-context1.83-dev libboost-context1.83.0 libboost-coroutine-dev libboost-coroutine1.83-dev libboost-coroutine1.83.0 libboost-date-time-dev libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-exception-dev libboost-exception1.83-dev libboost-fiber-dev libboost-fiber1.83-dev libboost-fiber1.83.0 libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.83-dev libboost-graph-parallel1.83.0 libboost-graph1.83-dev libboost-graph1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-json-dev libboost-json1.83-dev libboost-json1.83.0 libboost-locale-dev libboost-locale1.83-dev libboost-locale1.83.0 libboost-log-dev libboost-log1.83-dev libboost-log1.83.0 libboost-math-dev libboost-math1.83-dev libboost-math1.83.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.83-dev libboost-mpi-python1.83.0 libboost-mpi1.83-dev libboost-mpi1.83.0 libboost-nowide-dev libboost-nowide1.83-dev libboost-nowide1.83.0 libboost-numpy-dev libboost-numpy1.83-dev libboost-numpy1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost-random-dev libboost-random1.83-dev libboost-random1.83.0 libboost-regex-dev libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization-dev libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-stacktrace-dev libboost-stacktrace1.83-dev libboost-stacktrace1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost-test-dev libboost-test1.83-dev libboost-test1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost-timer-dev libboost-timer1.83-dev libboost-timer1.83.0 libboost-tools-dev libboost-type-erasure-dev libboost-type-erasure1.83-dev libboost-type-erasure1.83.0 libboost-url-dev libboost-url1.83-dev libboost-url1.83.0 libboost-wave-dev libboost-wave1.83-dev libboost-wave1.83.0 libboost1.83-dev libboost1.83-tools-dev libbrotli-dev libbrotli1 libcairo2 libcbor0.10 libcdt5 libcgraph6 libclang-cpp16t64 libclang1-16t64 libcom-err2 libcoordgen3 libcurl3t64-gnutls libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdebhelper-perl libdebuginfod-common libdebuginfod1t64 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm2 libdw1t64 libecpint-dev libedit2 libeigen3-dev libelf1t64 libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libfakeroot libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfido2-1 libfile-stripnondeterminism-perl libfmt9 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgd3 libgfortran-13-dev libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgraphite2-3 libgromacs-dev libgromacs9 libgsl-dev libgsl28 libgslcblas0 libgssapi-krb5-2 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhsa-runtime64-1 libhsakmt1 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs-dev libibverbs1 libice6 libicu-dev libicu72 libidn2-dev libimagequant0 libint2-2t64 libint2-dev libipt2 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp25 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblerc4 libllvm16t64 libllvm17t64 libltdl-dev libltdl7 liblua5.4-0 liblzf1 libmaeparser1 libmagic-mgc libmagic1t64 libmunge2 libmuparser2v5 libnghttp2-14 libnghttp2-dev libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnorm1t64 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3t64 libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpciaccess0 libpgm-5.3-0t64 libpipeline1 libpixman-1-0 libpkgconf3 libpmix-dev libpmix2t64 libpng16-16t64 libproc2-0 libpsl-dev libpsl5t64 libpsm-infinipath1 libpsm2-2 libpugixml-dev libpugixml1v5 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libraqm0 librav1e0.7 librdkit-dev librdkit1t64 librdmacm1t64 librhash0 librtmp-dev librtmp1 libsharpyuv0 libsm6 libsodium23 libsource-highlight-common libsource-highlight4t64 libsqlite3-dev libssh2-1-dev libssh2-1t64 libssl-dev libsvtav1enc2 libsz2 libtasn1-6-dev libthai-data libthai0 libtiff6 libtool libuchardet0 libucx0 libunbound8 libuv1t64 libwebp7 libwebpmux3 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxc-dev libxc9 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxt6t64 libyaml-0-2 libyuv0 libz3-4 libzmq5 libzstd-dev m4 man-db media-types mpi-default-bin mpi-default-dev netbase nettle-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssl pandoc pandoc-data pkg-config pkgconf pkgconf-bin po-debconf procps pybind11-dev python-babel-localedata python-tinycss2-common python3 python3-alabaster python3-asttokens python3-attr python3-babel python3-bleach python3-bs4 python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-comm python3-commonmark python3-coverage python3-dateutil python3-debugpy python3-decorator python3-defusedxml python3-dev python3-docutils python3-executing python3-fastjsonschema python3-h5py python3-h5py-serial python3-hatch-vcs python3-hatchling python3-html5lib python3-idna python3-imagesize python3-iniconfig python3-ipykernel python3-ipython python3-jedi python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-client python3-jupyter-core python3-jupyterlab-pygments python3-lxml python3-markupsafe python3-matplotlib-inline python3-minimal python3-mistune python3-nbclient python3-nbconvert python3-nbformat python3-nbsphinx python3-nest-asyncio python3-numpy python3-packaging python3-pandocfilters python3-parso python3-pathspec python3-pexpect python3-pkg-resources python3-platformdirs python3-pluggy python3-prompt-toolkit python3-psutil python3-ptyprocess python3-pure-eval python3-py python3-pygments python3-pytest python3-rdkit python3-recommonmark python3-referencing python3-requests python3-roman python3-rpds-py python3-setuptools python3-setuptools-scm python3-six python3-snowballstemmer python3-soupsieve python3-sphinx python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-stack-data python3-tinycss2 python3-tornado python3-traitlets python3-trove-classifiers python3-typeshed python3-urllib3 python3-wcwidth python3-webencodings python3-zmq python3.12 python3.12-dev python3.12-minimal rdkit-data sensible-utils sgml-base sphinx-common sphinx-rtd-theme-common sse4.2-support txt2tags tzdata ucf x11-common xml-core zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make flit python3-build python3-installer python3-wheel doxygen-latex doxygen-doc doxygen-gui gdb-doc gdbserver gettext-doc libasprintf-dev libgettextpo-dev gfortran-13-multilib gfortran-13-doc libcoarrays-dev gnuplot-doc gsfonts graphviz-doc groff pymol lrzip libboost-doc libboost1.83-doc gccxml libboost-contract1.83-dev libmpfrc++-dev libntl-dev xsltproc docbook-xml docbook-xsl default-jdk fop libcurl4-doc libidn-dev libkrb5-dev libldap2-dev libeigen3-doc libfftw3-doc libgd-tools low-memory-monitor gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libhdf5-doc libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libhwloc-contrib-plugins icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc libtool-doc libnghttp2-doc openmpi-doc p11-kit-doc pciutils sqlite3-doc libssl-doc gcj-jdk xapian-tools m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc nodejs php python ruby r-base-core libjs-katex citation-style-language-styles libmail-box-perl pybind11-doc python3-doc python3-tk python3-venv python-attr-doc python-bleach-doc python-charset-normalizer-doc python-coverage-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base python-fastjsonschema-doc python-h5py-doc python3-genshi python-ipython-doc python-jinja2-doc python-jsonschema-doc python3-pip python-lxml-doc python-nbconvert-doc texlive-fonts-recommended texlive-plain-generic python-nbsphinx-doc gfortran python-numpy-doc python-pexpect-doc subversion python-pygments-doc ttf-bitstream-vera rdkit-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-setuptools-doc python3-stemmer dvipng dvisvgm fonts-freefont-otf imagemagick-6.q16 latexmk python3-lib2to3 sphinx-doc tex-gyre python-tinycss2-doc python3-pycurl python-tornado-doc python3-twisted python-traitlets-doc python3-brotli python3.12-venv python3.12-doc binfmt-support sgml-base-doc Recommended packages: libc-dbg curl | wget | lynx fonts-liberation groff libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin libheif-plugin-x265 libheif-plugin-aomenc javascript-common libjson-xs-perl krb5-locales libcoarrays-openmpi-dev publicsuffix libtasn1-doc xauth libmail-sendmail-perl psmisc linux-sysctl-defaults libpaper-utils python3-pil python3-json-pointer python3-rfc3987 python3-uritemplate python3-webcolors python3-cssselect python3-matplotlib python3-sphinxcontrib.bibtex python3-pandas The following NEW packages will be installed: aglfn autoconf automake autopoint autotools-dev bash-completion bsdextrautils ca-certificates clang-format clang-format-16 cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common doxygen dwz fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-freefont-ttf fonts-lato fonts-mathjax gdb gettext gettext-base gfortran-13 gfortran-13-x86-64-linux-gnu gnuplot-data gnuplot-nox graphviz groff-base gromacs gromacs-data hdf5-helpers ibverbs-providers icu-devtools intltool-debian isa-support libabsl20230802 libaec-dev libaec0 libamd-comgr2 libamdhip64-5 libann0 libaom3 libarchive-zip-perl libarchive13t64 libavif16 libbabeltrace1 libblas3 libboost-all-dev libboost-atomic-dev libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-container-dev libboost-container1.83-dev libboost-container1.83.0 libboost-context-dev libboost-context1.83-dev libboost-context1.83.0 libboost-coroutine-dev libboost-coroutine1.83-dev libboost-coroutine1.83.0 libboost-date-time-dev libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-exception-dev libboost-exception1.83-dev libboost-fiber-dev libboost-fiber1.83-dev libboost-fiber1.83.0 libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.83-dev libboost-graph-parallel1.83.0 libboost-graph1.83-dev libboost-graph1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-json-dev libboost-json1.83-dev libboost-json1.83.0 libboost-locale-dev libboost-locale1.83-dev libboost-locale1.83.0 libboost-log-dev libboost-log1.83-dev libboost-log1.83.0 libboost-math-dev libboost-math1.83-dev libboost-math1.83.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.83-dev libboost-mpi-python1.83.0 libboost-mpi1.83-dev libboost-mpi1.83.0 libboost-nowide-dev libboost-nowide1.83-dev libboost-nowide1.83.0 libboost-numpy-dev libboost-numpy1.83-dev libboost-numpy1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost-random-dev libboost-random1.83-dev libboost-random1.83.0 libboost-regex-dev libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization-dev libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-stacktrace-dev libboost-stacktrace1.83-dev libboost-stacktrace1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost-test-dev libboost-test1.83-dev libboost-test1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost-timer-dev libboost-timer1.83-dev libboost-timer1.83.0 libboost-tools-dev libboost-type-erasure-dev libboost-type-erasure1.83-dev libboost-type-erasure1.83.0 libboost-url-dev libboost-url1.83-dev libboost-url1.83.0 libboost-wave-dev libboost-wave1.83-dev libboost-wave1.83.0 libboost1.83-dev libboost1.83-tools-dev libbrotli-dev libbrotli1 libcairo2 libcbor0.10 libcdt5 libcgraph6 libclang-cpp16t64 libclang1-16t64 libcom-err2 libcoordgen3 libcurl3t64-gnutls libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdebhelper-perl libdebuginfod-common libdebuginfod1t64 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm2 libdw1t64 libecpint-dev libedit2 libeigen3-dev libelf1t64 libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libfakeroot libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfido2-1 libfile-stripnondeterminism-perl libfmt9 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgd3 libgfortran-13-dev libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgraphite2-3 libgromacs-dev libgromacs9 libgsl-dev libgsl28 libgslcblas0 libgssapi-krb5-2 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhsa-runtime64-1 libhsakmt1 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs-dev libibverbs1 libice6 libicu-dev libicu72 libidn2-dev libimagequant0 libint2-2t64 libint2-dev libipt2 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp25 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblerc4 libllvm16t64 libllvm17t64 libltdl-dev libltdl7 liblua5.4-0 liblzf1 libmaeparser1 libmagic-mgc libmagic1t64 libmunge2 libmuparser2v5 libnghttp2-14 libnghttp2-dev libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnorm1t64 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3t64 libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpciaccess0 libpgm-5.3-0t64 libpipeline1 libpixman-1-0 libpkgconf3 libpmix-dev libpmix2t64 libpng16-16t64 libproc2-0 libpsl-dev libpsl5t64 libpsm-infinipath1 libpsm2-2 libpugixml-dev libpugixml1v5 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libraqm0 librav1e0.7 librdkit-dev librdkit1t64 librdmacm1t64 librhash0 librtmp-dev librtmp1 libsharpyuv0 libsm6 libsodium23 libsource-highlight-common libsource-highlight4t64 libsqlite3-dev libssh2-1-dev libssh2-1t64 libssl-dev libsvtav1enc2 libsz2 libtasn1-6-dev libthai-data libthai0 libtiff6 libtool libuchardet0 libucx0 libunbound8 libuv1t64 libwebp7 libwebpmux3 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxc-dev libxc9 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxt6t64 libyaml-0-2 libyuv0 libz3-4 libzmq5 libzstd-dev m4 man-db media-types mpi-default-bin mpi-default-dev netbase nettle-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssl pandoc pandoc-data pkg-config pkgconf pkgconf-bin po-debconf procps pybind11-dev python-babel-localedata python-tinycss2-common python3 python3-alabaster python3-asttokens python3-attr python3-babel python3-bleach python3-bs4 python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-comm python3-commonmark python3-coverage python3-dateutil python3-debugpy python3-decorator python3-defusedxml python3-dev python3-docutils python3-executing python3-fastjsonschema python3-h5py python3-h5py-serial python3-hatch-vcs python3-hatchling python3-html5lib python3-idna python3-imagesize python3-iniconfig python3-ipykernel python3-ipython python3-jedi python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-client python3-jupyter-core python3-jupyterlab-pygments python3-lxml python3-markupsafe python3-matplotlib-inline python3-minimal python3-mistune python3-nbclient python3-nbconvert python3-nbformat python3-nbsphinx python3-nest-asyncio python3-numpy python3-packaging python3-pandocfilters python3-parso python3-pathspec python3-pexpect python3-pkg-resources python3-platformdirs python3-pluggy python3-prompt-toolkit python3-psutil python3-ptyprocess python3-pure-eval python3-py python3-pygments python3-pytest python3-rdkit python3-recommonmark python3-referencing python3-requests python3-roman python3-rpds-py python3-setuptools python3-setuptools-scm python3-six python3-snowballstemmer python3-soupsieve python3-sphinx python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-stack-data python3-tinycss2 python3-tornado python3-traitlets python3-trove-classifiers python3-typeshed python3-urllib3 python3-wcwidth python3-webencodings python3-zmq python3.12 python3.12-dev python3.12-minimal rdkit-data sbuild-build-depends-main-dummy sensible-utils sgml-base sphinx-common sphinx-rtd-theme-common sse4.2-support txt2tags tzdata ucf x11-common xml-core zlib1g-dev 0 upgraded, 508 newly installed, 0 to remove and 0 not upgraded. Need to get 485 MB of archives. After this operation, 2513 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1120 B] Get:2 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libdebuginfod-common all 0.191-2 [22.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.4-3 [812 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.4-3 [2137 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.4-1 [26.5 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.4-3 [1950 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.4-3 [664 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.4-1 [9500 B] Get:16 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.4-1 [27.6 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 isa-support amd64 24 [14.4 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 sse4.2-support amd64 24 [3496 B] Get:20 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-5 [64.7 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-5 [878 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 bash-completion all 1:2.14.0-1 [305 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.1-2 [1380 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-2 [96.4 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240517-1 [93.3 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-1.2 [28.2 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.15.0-1 [78.5 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:41 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:9.8p1-2 [964 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libllvm16t64 amd64 1:16.0.6-27+b1 [23.1 MB] Get:54 http://deb.debian.org/debian unstable/main amd64 libclang-cpp16t64 amd64 1:16.0.6-27+b1 [11.5 MB] Get:55 http://deb.debian.org/debian unstable/main amd64 clang-format-16 amd64 1:16.0.6-27+b1 [83.0 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 clang-format amd64 1:16.0-58.1 [5552 B] Get:57 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.2-2.1 [346 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.62.1-2 [74.9 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-7 [216 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.9.1-1 [463 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-5 [148 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.30.2-1 [2268 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.30.2-1 [11.4 MB] Get:69 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:75 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 70.3.0-2 [264 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 70.3.0-2 [504 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240603 [109 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libclang1-16t64 amd64 1:16.0.6-27+b1 [6586 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libxapian30 amd64 1.4.25-1 [1139 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 fonts-freefont-ttf all 20211204+svn4273-2 [5318 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:101 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:102 http://deb.debian.org/debian unstable/main amd64 libdw1t64 amd64 0.191-2 [247 kB] Get:103 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.81.1-3 [1496 kB] Get:104 http://deb.debian.org/debian unstable/main amd64 libbabeltrace1 amd64 1.5.11-3+b7 [176 kB] Get:105 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.4.0-1 [63.1 kB] Get:106 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get:107 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get:108 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.9.1-1 [470 kB] Get:109 http://deb.debian.org/debian unstable/main amd64 libdebuginfod1t64 amd64 0.191-2 [28.2 kB] Get:110 http://deb.debian.org/debian unstable/main amd64 libipt2 amd64 2.0.6-1 [43.2 kB] Get:111 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.4-3 [2114 kB] Get:112 http://deb.debian.org/debian unstable/main amd64 libsource-highlight-common all 3.1.9-4.3 [77.5 kB] Get:113 http://deb.debian.org/debian unstable/main amd64 libsource-highlight4t64 amd64 3.1.9-4.3 [324 kB] Get:114 http://deb.debian.org/debian unstable/main amd64 gdb amd64 15.1-1 [4382 kB] Get:115 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-1 [837 kB] Get:116 http://deb.debian.org/debian unstable/main amd64 libgfortran-13-dev amd64 13.3.0-4 [847 kB] Get:117 http://deb.debian.org/debian unstable/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.3.0-4 [10.6 MB] Get:118 http://deb.debian.org/debian unstable/main amd64 gfortran-13 amd64 13.3.0-4 [14.1 kB] Get:119 http://deb.debian.org/debian unstable/main amd64 gnuplot-data all 6.0.0+dfsg1-3 [72.3 kB] Get:120 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:121 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get:122 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get:123 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get:124 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:125 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get:126 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get:127 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get:128 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:129 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get:130 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get:131 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.9.1-1 [1864 kB] Get:132 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.4.3-1 [551 kB] Get:133 http://deb.debian.org/debian unstable/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get:134 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-2+b1 [351 kB] Get:135 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-4 [935 kB] Get:136 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.1.0+dfsg-2 [2152 kB] Get:137 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get:138 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1888.20240710-3 [170 kB] Get:139 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.1.0-3 [115 kB] Get:140 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get:141 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.18.1-1 [10.6 kB] Get:142 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b2 [189 kB] Get:143 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.18.1-1 [13.9 kB] Get:144 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.18.1-1 [342 kB] Get:145 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get:146 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get:147 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:148 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:149 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get:150 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get:151 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:152 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:153 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get:154 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:155 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get:156 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-12 [125 kB] Get:157 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.6-3+b1 [147 kB] Get:158 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:159 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:160 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get:161 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.54.0+ds-1 [219 kB] Get:162 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-1 [48.0 kB] Get:163 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-1 [35.0 kB] Get:164 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get:165 http://deb.debian.org/debian unstable/main amd64 gnuplot-nox amd64 6.0.0+dfsg1-3 [916 kB] Get:166 http://deb.debian.org/debian unstable/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get:167 http://deb.debian.org/debian unstable/main amd64 libcdt5 amd64 2.42.4-1 [39.8 kB] Get:168 http://deb.debian.org/debian unstable/main amd64 libcgraph6 amd64 2.42.4-1 [63.7 kB] Get:169 http://deb.debian.org/debian unstable/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2 [157 kB] Get:170 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get:171 http://deb.debian.org/debian unstable/main amd64 libpathplan4 amd64 2.42.4-1 [42.3 kB] Get:172 http://deb.debian.org/debian unstable/main amd64 libgvc6 amd64 2.42.4-1 [682 kB] Get:173 http://deb.debian.org/debian unstable/main amd64 libgvpr2 amd64 2.42.4-1 [189 kB] Get:174 http://deb.debian.org/debian unstable/main amd64 liblab-gamut1 amd64 2.42.4-1 [198 kB] Get:175 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get:176 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get:177 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get:178 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get:179 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get:180 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get:181 http://deb.debian.org/debian unstable/main amd64 graphviz amd64 2.42.4-1 [616 kB] Get:182 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:183 http://deb.debian.org/debian unstable/main amd64 gromacs-data all 2024.2-1 [43.4 MB] Get:184 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:185 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-1+b3 [780 kB] Get:186 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-1+b3 [806 kB] Get:187 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.11.0-2 [162 kB] Get:188 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:189 http://deb.debian.org/debian unstable/main amd64 libmuparser2v5 amd64 2.3.4-1 [146 kB] Get:190 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10 [131 kB] Get:191 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [53.9 kB] Get:192 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get:193 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get:194 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 52.0-2 [61.6 kB] Get:195 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 52.0-2 [343 kB] Get:196 http://deb.debian.org/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get:197 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Get:198 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:199 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 52.0-2 [70.2 kB] Get:200 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 1.17.0-3+b1 [628 kB] Get:201 http://deb.debian.org/debian unstable/main amd64 libmunge2 amd64 0.5.15-4 [19.8 kB] Get:202 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get:203 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1 [13.8 kB] Get:204 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get:205 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.11.0-2 [17.9 kB] Get:206 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 5.0.3-2 [658 kB] Get:207 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-15 [23.6 MB] Get:208 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b1 [13.0 MB] Get:209 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.122-1 [7992 B] Get:210 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.122-1 [38.7 kB] Get:211 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.122-1 [22.2 kB] Get:212 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get:213 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 5.7.1-2 [504 kB] Get:214 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-4 [8770 kB] Get:215 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 52.0-2 [27.7 kB] Get:216 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 52.0-2 [43.3 kB] Get:217 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get:218 http://deb.debian.org/debian unstable/main amd64 libopenmpi3t64 amd64 4.1.6-13.3 [2426 kB] Get:219 http://deb.debian.org/debian unstable/main amd64 libgromacs9 amd64 2024.2-1 [30.8 MB] Get:220 http://deb.debian.org/debian unstable/main amd64 gromacs amd64 2024.2-1 [60.4 kB] Get:221 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.10.10+repack-4 [23.5 kB] Get:222 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5 [207 kB] Get:223 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get:224 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get:225 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get:226 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-3.1 [10.6 MB] Get:227 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-3.1 [234 kB] Get:228 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-3.1 [235 kB] Get:229 http://deb.debian.org/debian unstable/main amd64 libboost-atomic-dev amd64 1.83.0.2+b2 [3904 B] Get:230 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-3.1 [240 kB] Get:231 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-3.1 [245 kB] Get:232 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get:233 http://deb.debian.org/debian unstable/main amd64 libboost-container1.83.0 amd64 1.83.0-3.1 [259 kB] Get:234 http://deb.debian.org/debian unstable/main amd64 libboost-container1.83-dev amd64 1.83.0-3.1 [264 kB] Get:235 http://deb.debian.org/debian unstable/main amd64 libboost-container-dev amd64 1.83.0.2+b2 [4072 B] Get:236 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-3.1 [230 kB] Get:237 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-3.1 [333 kB] Get:238 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-3.1 [372 kB] Get:239 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-3.1 [239 kB] Get:240 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-3.1 [230 kB] Get:241 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-3.1 [231 kB] Get:242 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.1 [269 kB] Get:243 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-3.1 [276 kB] Get:244 http://deb.debian.org/debian unstable/main amd64 libboost-context1.83.0 amd64 1.83.0-3.1 [231 kB] Get:245 http://deb.debian.org/debian unstable/main amd64 libboost-context1.83-dev amd64 1.83.0-3.1 [232 kB] Get:246 http://deb.debian.org/debian unstable/main amd64 libboost-context-dev amd64 1.83.0.2+b2 [3804 B] Get:247 http://deb.debian.org/debian unstable/main amd64 libboost-coroutine1.83.0 amd64 1.83.0-3.1 [234 kB] Get:248 http://deb.debian.org/debian unstable/main amd64 libboost-coroutine1.83-dev amd64 1.83.0-3.1 [236 kB] Get:249 http://deb.debian.org/debian unstable/main amd64 libboost-coroutine-dev amd64 1.83.0.2+b2 [3868 B] Get:250 http://deb.debian.org/debian unstable/main amd64 libboost-date-time-dev amd64 1.83.0.2+b2 [3596 B] Get:251 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:252 http://deb.debian.org/debian unstable/main amd64 libboost-exception1.83-dev amd64 1.83.0-3.1 [230 kB] Get:253 http://deb.debian.org/debian unstable/main amd64 libboost-exception-dev amd64 1.83.0.2+b2 [3584 B] Get:254 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-3.1 [281 kB] Get:255 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-3.1 [297 kB] Get:256 http://deb.debian.org/debian unstable/main amd64 libboost-fiber1.83.0 amd64 1.83.0-3.1 [254 kB] Get:257 http://deb.debian.org/debian unstable/main amd64 libboost-fiber1.83-dev amd64 1.83.0-3.1 [265 kB] Get:258 http://deb.debian.org/debian unstable/main amd64 libboost-fiber-dev amd64 1.83.0.2+b2 [4028 B] Get:259 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get:260 http://deb.debian.org/debian unstable/main amd64 libboost-graph1.83.0 amd64 1.83.0-3.1 [359 kB] Get:261 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-3.1 [328 kB] Get:262 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5 [10.4 MB] Get:263 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-3.1 [346 kB] Get:264 http://deb.debian.org/debian unstable/main amd64 libboost-test1.83.0 amd64 1.83.0-3.1 [471 kB] Get:265 http://deb.debian.org/debian unstable/main amd64 libboost-test1.83-dev amd64 1.83.0-3.1 [541 kB] Get:266 http://deb.debian.org/debian unstable/main amd64 libboost-graph1.83-dev amd64 1.83.0-3.1 [382 kB] Get:267 http://deb.debian.org/debian unstable/main amd64 libboost-graph-dev amd64 1.83.0.2+b2 [3700 B] Get:268 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83.0 amd64 1.83.0-3.1 [271 kB] Get:269 http://deb.debian.org/debian unstable/main amd64 libboost-graph-parallel1.83.0 amd64 1.83.0-3.1 [280 kB] Get:270 http://deb.debian.org/debian unstable/main amd64 libboost-graph-parallel1.83-dev amd64 1.83.0-3.1 [284 kB] Get:271 http://deb.debian.org/debian unstable/main amd64 libboost-graph-parallel-dev amd64 1.83.0.2+b2 [3728 B] Get:272 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-3.1 [253 kB] Get:273 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-3.1 [261 kB] Get:274 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get:275 http://deb.debian.org/debian unstable/main amd64 libboost-json1.83.0 amd64 1.83.0-3.1 [356 kB] Get:276 http://deb.debian.org/debian unstable/main amd64 libboost-json1.83-dev amd64 1.83.0-3.1 [373 kB] Get:277 http://deb.debian.org/debian unstable/main amd64 libboost-json-dev amd64 1.83.0.2+b2 [3704 B] Get:278 http://deb.debian.org/debian unstable/main amd64 libboost-locale1.83.0 amd64 1.83.0-3.1 [472 kB] Get:279 http://deb.debian.org/debian unstable/main amd64 libboost-locale1.83-dev amd64 1.83.0-3.1 [554 kB] Get:280 http://deb.debian.org/debian unstable/main amd64 libboost-locale-dev amd64 1.83.0.2+b2 [3924 B] Get:281 http://deb.debian.org/debian unstable/main amd64 libboost-log1.83.0 amd64 1.83.0-3.1 [708 kB] Get:282 http://deb.debian.org/debian unstable/main amd64 libboost-log1.83-dev amd64 1.83.0-3.1 [879 kB] Get:283 http://deb.debian.org/debian unstable/main amd64 libboost-log-dev amd64 1.83.0.2+b2 [3796 B] Get:284 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83.0 amd64 1.83.0-3.1 [523 kB] Get:285 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83-dev amd64 1.83.0-3.1 [569 kB] Get:286 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get:287 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 4.1.6-13.3 [169 kB] Get:288 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.7.0-0.3 [99.4 kB] Get:289 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.7.0-0.3 [199 kB] Get:290 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 52.0-2 [647 kB] Get:291 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.18-1 [36.2 kB] Get:292 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.4.7-7+b1 [164 kB] Get:293 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.11.0-2 [251 kB] Get:294 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [181 kB] Get:295 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10 [107 kB] Get:296 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10 [60.8 kB] Get:297 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-10 [305 kB] Get:298 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get:299 http://deb.debian.org/debian unstable/main amd64 libpmix-dev amd64 5.0.3-2 [3954 kB] Get:300 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:301 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:302 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 4.1.6-13.3 [226 kB] Get:303 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 4.1.6-13.3 [972 kB] Get:304 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.17 [3148 B] Get:305 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83-dev amd64 1.83.0-3.1 [290 kB] Get:306 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get:307 http://deb.debian.org/debian unstable/main amd64 libboost-python1.83.0 amd64 1.83.0-3.1 [306 kB] Get:308 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.17 [2372 B] Get:309 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-python1.83.0 amd64 1.83.0-3.1 [357 kB] Get:310 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-python1.83-dev amd64 1.83.0-3.1 [237 kB] Get:311 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-python-dev amd64 1.83.0.2+b2 [3712 B] Get:312 http://deb.debian.org/debian unstable/main amd64 libboost-nowide1.83.0 amd64 1.83.0-3.1 [234 kB] Get:313 http://deb.debian.org/debian unstable/main amd64 libboost-nowide1.83-dev amd64 1.83.0-3.1 [235 kB] Get:314 http://deb.debian.org/debian unstable/main amd64 libboost-nowide-dev amd64 1.83.0.2+b2 [3668 B] Get:315 http://deb.debian.org/debian unstable/main amd64 libboost-numpy1.83.0 amd64 1.83.0-3.1 [241 kB] Get:316 http://deb.debian.org/debian unstable/main amd64 libboost-numpy1.83-dev amd64 1.83.0-3.1 [245 kB] Get:317 http://deb.debian.org/debian unstable/main amd64 libboost-numpy-dev amd64 1.83.0.2+b2 [3644 B] Get:318 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3.1 [347 kB] Get:319 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-3.1 [375 kB] Get:320 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get:321 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get:322 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.4-3 [5077 kB] Get:323 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.4-1 [9736 B] Get:324 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.4-3 [499 kB] Get:325 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:326 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.3.7-4 [154 kB] Get:327 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.4-1 [26.2 kB] Get:328 http://deb.debian.org/debian unstable/main amd64 libboost-python1.83-dev amd64 1.83.0-3.1 [327 kB] Get:329 http://deb.debian.org/debian unstable/main amd64 libboost-python-dev amd64 1.83.0.2+b2 [3892 B] Get:330 http://deb.debian.org/debian unstable/main amd64 libboost-random1.83.0 amd64 1.83.0-3.1 [238 kB] Get:331 http://deb.debian.org/debian unstable/main amd64 libboost-random1.83-dev amd64 1.83.0-3.1 [240 kB] Get:332 http://deb.debian.org/debian unstable/main amd64 libboost-random-dev amd64 1.83.0.2+b2 [3592 B] Get:333 http://deb.debian.org/debian unstable/main amd64 libboost-regex-dev amd64 1.83.0.2+b2 [3864 B] Get:334 http://deb.debian.org/debian unstable/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get:335 http://deb.debian.org/debian unstable/main amd64 libboost-stacktrace1.83.0 amd64 1.83.0-3.1 [283 kB] Get:336 http://deb.debian.org/debian unstable/main amd64 libboost-stacktrace1.83-dev amd64 1.83.0-3.1 [245 kB] Get:337 http://deb.debian.org/debian unstable/main amd64 libboost-stacktrace-dev amd64 1.83.0.2+b2 [3592 B] Get:338 http://deb.debian.org/debian unstable/main amd64 libboost-system-dev amd64 1.83.0.2+b2 [3736 B] Get:339 http://deb.debian.org/debian unstable/main amd64 libboost-test-dev amd64 1.83.0.2+b2 [3628 B] Get:340 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get:341 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83.0 amd64 1.83.0-3.1 [234 kB] Get:342 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83-dev amd64 1.83.0-3.1 [236 kB] Get:343 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get:344 http://deb.debian.org/debian unstable/main amd64 libboost1.83-tools-dev amd64 1.83.0-3.1 [1529 kB] Get:345 http://deb.debian.org/debian unstable/main amd64 libboost-tools-dev amd64 1.83.0.2+b2 [3768 B] Get:346 http://deb.debian.org/debian unstable/main amd64 libboost-type-erasure1.83.0 amd64 1.83.0-3.1 [245 kB] Get:347 http://deb.debian.org/debian unstable/main amd64 libboost-type-erasure1.83-dev amd64 1.83.0-3.1 [248 kB] Get:348 http://deb.debian.org/debian unstable/main amd64 libboost-type-erasure-dev amd64 1.83.0.2+b2 [3688 B] Get:349 http://deb.debian.org/debian unstable/main amd64 libboost-url1.83.0 amd64 1.83.0-3.1 [336 kB] Get:350 http://deb.debian.org/debian unstable/main amd64 libboost-url1.83-dev amd64 1.83.0-3.1 [422 kB] Get:351 http://deb.debian.org/debian unstable/main amd64 libboost-url-dev amd64 1.83.0.2+b2 [3732 B] Get:352 http://deb.debian.org/debian unstable/main amd64 libboost-wave1.83.0 amd64 1.83.0-3.1 [437 kB] Get:353 http://deb.debian.org/debian unstable/main amd64 libboost-wave1.83-dev amd64 1.83.0-3.1 [486 kB] Get:354 http://deb.debian.org/debian unstable/main amd64 libboost-wave-dev amd64 1.83.0.2+b2 [3624 B] Get:355 http://deb.debian.org/debian unstable/main amd64 libboost-all-dev amd64 1.83.0.2+b2 [3936 B] Get:356 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b4 [313 kB] Get:357 http://deb.debian.org/debian unstable/main amd64 libcoordgen3 amd64 3.0.2-1+b1 [218 kB] Get:358 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2 [123 kB] Get:359 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-3 [36.2 kB] Get:360 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-3 [29.9 kB] Get:361 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-3 [26.1 kB] Get:362 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.62.1-2 [115 kB] Get:363 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1 [77.4 kB] Get:364 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b1 [329 kB] Get:365 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b1 [640 kB] Get:366 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.20.0-1+b1 [583 kB] Get:367 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.6-2 [439 kB] Get:368 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.6-2 [439 kB] Get:369 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2 [208 kB] Get:370 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b2 [98.0 kB] Get:371 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1 [1316 kB] Get:372 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.6-2 [1381 kB] Get:373 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b4 [67.7 kB] Get:374 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.1-2 [2739 kB] Get:375 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.0-7 [357 kB] Get:376 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [368 kB] Get:377 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.9.1-1 [572 kB] Get:378 http://deb.debian.org/debian unstable/main amd64 libpugixml1v5 amd64 1.14-0.1+b1 [86.6 kB] Get:379 http://deb.debian.org/debian unstable/main amd64 libpugixml-dev amd64 1.14-0.1+b1 [107 kB] Get:380 http://deb.debian.org/debian unstable/main amd64 libecpint-dev amd64 1.0.7-4+b1 [260 kB] Get:381 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-3 [13.9 kB] Get:382 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get:383 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-1+b3 [344 kB] Get:384 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-1+b3 [607 kB] Get:385 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-1+b3 [52.4 kB] Get:386 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-1+b3 [2124 kB] Get:387 http://deb.debian.org/debian unstable/main amd64 libgromacs-dev amd64 2024.2-1 [172 kB] Get:388 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-3 [116 kB] Get:389 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-3 [994 kB] Get:390 http://deb.debian.org/debian unstable/main amd64 libgsl-dev amd64 2.8+dfsg-3 [1223 kB] Get:391 http://deb.debian.org/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get:392 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-4 [130 kB] Get:393 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-4 [89.5 kB] Get:394 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get:395 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-4 [40.5 kB] Get:396 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-4 [21.4 kB] Get:397 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get:398 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get:399 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.10.10+repack-4 [2652 kB] Get:400 http://deb.debian.org/debian unstable/main amd64 libint2-2t64 amd64 2.7.2-1.1 [4074 kB] Get:401 http://deb.debian.org/debian unstable/main amd64 libint2-dev amd64 2.7.2-1.1 [20.9 MB] Get:402 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:403 http://deb.debian.org/debian unstable/main amd64 liblzf1 amd64 3.6-4+b1 [10.4 kB] Get:404 http://deb.debian.org/debian unstable/main amd64 libmaeparser1 amd64 1.3.1-1+b1 [93.6 kB] Get:405 http://deb.debian.org/debian unstable/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1 [221 kB] Get:406 http://deb.debian.org/debian unstable/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1 [161 kB] Get:407 http://deb.debian.org/debian unstable/main amd64 librdkit1t64 amd64 202309.3-4+b1 [4912 kB] Get:408 http://deb.debian.org/debian unstable/main amd64 librdkit-dev amd64 202309.3-4+b1 [415 kB] Get:409 http://deb.debian.org/debian unstable/main amd64 libsodium23 amd64 1.0.18-1+b1 [163 kB] Get:410 http://deb.debian.org/debian unstable/main amd64 libsqlite3-dev amd64 3.46.0-1 [1096 kB] Get:411 http://deb.debian.org/debian unstable/main amd64 libxc9 amd64 5.2.3-1+b1 [3815 kB] Get:412 http://deb.debian.org/debian unstable/main amd64 libxc-dev amd64 5.2.3-1+b1 [8165 kB] Get:413 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1 [232 kB] Get:414 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get:415 http://deb.debian.org/debian unstable/main amd64 libzmq5 amd64 4.3.5-1+b2 [281 kB] Get:416 http://deb.debian.org/debian unstable/main amd64 pandoc-data all 3.1.3-2 [445 kB] Get:417 http://deb.debian.org/debian unstable/main amd64 pandoc amd64 3.1.3+ds-3 [24.3 MB] Get:418 http://deb.debian.org/debian unstable/main amd64 pybind11-dev all 2.12.0-1 [198 kB] Get:419 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get:420 http://deb.debian.org/debian unstable/main amd64 python-tinycss2-common all 1.3.0-1 [31.9 kB] Get:421 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get:422 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get:423 http://deb.debian.org/debian unstable/main amd64 python3-asttokens all 2.4.1-1 [20.6 kB] Get:424 http://deb.debian.org/debian unstable/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get:425 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.14.0-1 [111 kB] Get:426 http://deb.debian.org/debian unstable/main amd64 python3-webencodings all 0.5.1-5 [11.1 kB] Get:427 http://deb.debian.org/debian unstable/main amd64 python3-html5lib all 1.1-6 [90.5 kB] Get:428 http://deb.debian.org/debian unstable/main amd64 python3-bleach all 6.1.0-2 [50.7 kB] Get:429 http://deb.debian.org/debian unstable/main amd64 python3-soupsieve all 2.5-1 [38.1 kB] Get:430 http://deb.debian.org/debian unstable/main amd64 python3-bs4 all 4.12.3-1 [133 kB] Get:431 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.6.2-1 [157 kB] Get:432 http://deb.debian.org/debian unstable/main amd64 python3-cffi-backend amd64 1.16.0-2+b3 [86.4 kB] Get:433 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:434 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.3.2-2 [116 kB] Get:435 http://deb.debian.org/debian unstable/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get:436 http://deb.debian.org/debian unstable/main amd64 python3-comm all 0.2.1-1 [8104 B] Get:437 http://deb.debian.org/debian unstable/main amd64 python3-commonmark all 0.9.1-6 [45.3 kB] Get:438 http://deb.debian.org/debian unstable/main amd64 python3-coverage amd64 7.6.0+dfsg1-1 [175 kB] Get:439 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:440 http://deb.debian.org/debian unstable/main amd64 python3-debugpy amd64 1.8.2+ds-5 [576 kB] Get:441 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:442 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get:443 http://deb.debian.org/debian unstable/main amd64 python3-roman all 3.3-3 [9880 B] Get:444 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get:445 http://deb.debian.org/debian unstable/main amd64 python3-executing all 2.0.1-0.1 [22.7 kB] Get:446 http://deb.debian.org/debian unstable/main amd64 python3-fastjsonschema all 2.20.0-1 [21.8 kB] Get:447 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get:448 http://deb.debian.org/debian unstable/main amd64 python3-h5py-serial amd64 3.11.0-5 [975 kB] Get:449 http://deb.debian.org/debian unstable/main amd64 python3-h5py all 3.11.0-5 [14.7 kB] Get:450 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get:451 http://deb.debian.org/debian unstable/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get:452 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get:453 http://deb.debian.org/debian unstable/main amd64 python3-trove-classifiers all 2024.4.10-1 [10.1 kB] Get:454 http://deb.debian.org/debian unstable/main amd64 python3-hatchling all 1.25.0-1 [53.8 kB] Get:455 http://deb.debian.org/debian unstable/main amd64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get:456 http://deb.debian.org/debian unstable/main amd64 python3-hatch-vcs all 0.4.0-1 [8336 B] Get:457 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.6-2.1 [38.6 kB] Get:458 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get:459 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get:460 http://deb.debian.org/debian unstable/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get:461 http://deb.debian.org/debian unstable/main amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get:462 http://deb.debian.org/debian unstable/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get:463 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get:464 http://deb.debian.org/debian unstable/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get:465 http://deb.debian.org/debian unstable/main amd64 python3-pexpect all 4.9-2 [55.5 kB] Get:466 http://deb.debian.org/debian unstable/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get:467 http://deb.debian.org/debian unstable/main amd64 python3-prompt-toolkit all 3.0.47-1 [277 kB] Get:468 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get:469 http://deb.debian.org/debian unstable/main amd64 python3-pure-eval all 0.2.2-2 [11.0 kB] Get:470 http://deb.debian.org/debian unstable/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get:471 http://deb.debian.org/debian unstable/main amd64 python3-ipython all 8.20.0-1 [556 kB] Get:472 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.2.1-1 [16.0 kB] Get:473 http://deb.debian.org/debian unstable/main amd64 python3-jupyter-core all 5.7.2-4 [35.1 kB] Get:474 http://deb.debian.org/debian unstable/main amd64 python3-tornado amd64 6.4.1-1 [348 kB] Get:475 http://deb.debian.org/debian unstable/main amd64 python3-py all 1.11.0-2 [88.7 kB] Get:476 http://deb.debian.org/debian unstable/main amd64 python3-zmq amd64 24.0.1-5+b2 [269 kB] Get:477 http://deb.debian.org/debian unstable/main amd64 python3-jupyter-client all 8.6.2-2 [91.2 kB] Get:478 http://deb.debian.org/debian unstable/main amd64 python3-nest-asyncio all 1.5.4-1 [6248 B] Get:479 http://deb.debian.org/debian unstable/main amd64 python3-psutil amd64 5.9.8-2 [225 kB] Get:480 http://deb.debian.org/debian unstable/main amd64 python3-ipykernel all 6.29.5-1 [102 kB] Get:481 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b1 [13.6 kB] Get:482 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get:483 http://deb.debian.org/debian unstable/main amd64 python3-rpds-py amd64 0.12.0-3+b1 [225 kB] Get:484 http://deb.debian.org/debian unstable/main amd64 python3-referencing all 0.31.0-1 [22.2 kB] Get:485 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema-specifications all 2023.12.1-1 [8976 B] Get:486 http://deb.debian.org/debian unstable/main amd64 python3-jsonschema all 4.19.2-3 [71.3 kB] Get:487 http://deb.debian.org/debian unstable/main amd64 python3-jupyterlab-pygments all 0.2.2-3 [6096 B] Get:488 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.2.2-1 [1208 kB] Get:489 http://deb.debian.org/debian unstable/main amd64 python3-mistune all 3.0.2-1 [33.1 kB] Get:490 http://deb.debian.org/debian unstable/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get:491 http://deb.debian.org/debian unstable/main amd64 python3-nbclient all 0.8.0-1 [64.0 kB] Get:492 http://deb.debian.org/debian unstable/main amd64 python3-pandocfilters all 1.5.1-1 [23.7 kB] Get:493 http://deb.debian.org/debian unstable/main amd64 python3-tinycss2 all 1.3.0-1 [22.1 kB] Get:494 http://deb.debian.org/debian unstable/main amd64 python3-nbconvert all 7.16.4-1 [175 kB] Get:495 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 7.3.7-4 [731 kB] Get:496 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get:497 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get:498 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get:499 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 7.3.7-4 [569 kB] Get:500 http://deb.debian.org/debian unstable/main amd64 python3-nbsphinx all 0.9.4+ds-1 [39.5 kB] Get:501 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.2-1 [249 kB] Get:502 http://deb.debian.org/debian unstable/main amd64 rdkit-data all 202309.3-4 [13.1 MB] Get:503 http://deb.debian.org/debian unstable/main amd64 python3-rdkit amd64 202309.3-4+b1 [4561 kB] Get:504 http://deb.debian.org/debian unstable/main amd64 python3-recommonmark all 0.7.1+ds-5 [17.3 kB] Get:505 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 2.0.0+dfsg-2 [1021 kB] Get:506 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get:507 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 2.0.0+dfsg-2 [28.5 kB] Get:508 http://deb.debian.org/debian unstable/main amd64 txt2tags all 3.4-4 [112 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 485 MB in 7s (67.9 MB/s) Selecting previously unselected package fonts-lato. 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Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libdw1t64:amd64 (0.191-2) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Aug 5 04:36:51 UTC 2024. Universal Time is now: Mon Aug 5 04:36:51 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-3.1) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libboost-serialization1.83.0:amd64 (1.83.0-3.1) ... Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1) ... Setting up libboost-numpy1.83.0 (1.83.0-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:amd64 (2.81.1-3) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.20.0-1+b1) ... Setting up libpkgconf3:amd64 (1.8.1-3) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2+b1) ... Setting up libmunge2:amd64 (0.5.15-4) ... Setting up libexpat1-dev:amd64 (2.6.2-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libgnutls-dane0t64:amd64 (3.8.6-2) ... Setting up libsqlite3-dev:amd64 (3.46.0-1) ... Setting up libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libsvtav1enc2:amd64 (2.1.0+dfsg-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3) ... Setting up libboost-chrono1.83.0t64:amd64 (1.83.0-3.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libboost-iostreams1.83.0:amd64 (1.83.0-3.1) ... Setting up bash-completion (1:2.14.0-1) ... Setting up libpathplan4:amd64 (2.42.4-1) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up liblzf1:amd64 (3.6-4+b1) ... Setting up libfftw3-quad3:amd64 (3.3.10-1+b3) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b1) ... Setting up libproc2-0:amd64 (2:4.0.4-5) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:amd64 (3.3.1-2) ... Setting up libboost-nowide1.83-dev (1.83.0-3.1) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libhwloc15:amd64 (2.11.0-2) ... Setting up libboost-stacktrace1.83-dev:amd64 (1.83.0-3.1) ... Setting up autopoint (0.22.5-2) ... Setting up libboost-numpy1.83-dev (1.83.0-3.1) ... Setting up libjsoncpp25:amd64 (1.9.5-6+b2) ... Setting up icu-devtools (72.1-5) ... Setting up libipt2 (2.0.6-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libltdl7:amd64 (2.4.7-7+b1) ... Setting up libidn2-dev:amd64 (2.3.7-2) ... Setting up libfftw3-double3:amd64 (3.3.10-1+b3) ... Setting up libbabeltrace1:amd64 (1.5.11-3+b7) ... Setting up libboost-test1.83.0:amd64 (1.83.0-3.1) ... Setting up libgfortran5:amd64 (14.2.0-1) ... Setting up libboost-fiber1.83.0:amd64 (1.83.0-3.1) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-3.1) ... Setting up autoconf (2.71-3) ... Setting up libnghttp3-9:amd64 (1.4.0-1) ... Setting up libwebp7:amd64 (1.4.0-0.1) ... Setting up libfmt9:amd64 (9.1.0+ds1-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libboost-atomic-dev:amd64 (1.83.0.2+b2) ... Setting up libnuma1:amd64 (2.0.18-1) ... Setting up dwz (0.15-1+b1) ... Setting up libdav1d7:amd64 (1.4.3-1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Setting up libboost-exception1.83-dev:amd64 (1.83.0-3.1) ... Setting up librhash0:amd64 (1.4.3-3+b1) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libboost-stacktrace-dev:amd64 (1.83.0.2+b2) ... Setting up librav1e0.7:amd64 (0.7.1-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-5) ... Setting up python-tinycss2-common (1.3.0-1) ... Setting up libjson-perl (4.10000-1) ... Setting up sse4.2-support (24) ... Setting up libnl-3-200:amd64 (3.7.0-0.3) ... Setting up libboost-graph1.83.0:amd64 (1.83.0-3.1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (4.1.6-13.3) ... Setting up libboost-container1.83.0:amd64 (1.83.0-3.1) ... Setting up liblua5.4-0:amd64 (5.4.6-3+b1) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libabsl20230802:amd64 (20230802.1-4) ... Setting up libngtcp2-16:amd64 (1.6.0-1) ... Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2) ... Setting up sgml-base (1.31) ... Setting up libboost-type-erasure1.83.0:amd64 (1.83.0-3.1) ... Setting up cmake-data (3.30.2-1) ... Setting up libcdt5:amd64 (2.42.4-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libcgraph6:amd64 (2.42.4-1) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-3.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:amd64 (1.11.0-7) ... Setting up libint2-2t64 (2.7.2-1.1) ... Setting up pandoc-data (3.1.3-2) ... Setting up libmuparser2v5:amd64 (2.3.4-1) ... Setting up libboost-math1.83.0:amd64 (1.83.0-3.1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libcoordgen3:amd64 (3.0.2-1+b1) ... Setting up libfido2-1:amd64 (1.15.0-1) ... Setting up libgsl28:amd64 (2.8+dfsg-3) ... Setting up libde265-0:amd64 (1.0.15-1+b2) ... Setting up libgfortran-13-dev:amd64 (13.3.0-4) ... Setting up libtasn1-6-dev:amd64 (4.19.0-3+b2) ... Setting up openssl (3.3.1-2) ... Setting up libwebpmux3:amd64 (1.4.0-0.1) ... Setting up libdrm-common (2.4.122-1) ... Setting up libyuv0:amd64 (0.0.1888.20240710-3) ... Setting up libicu-dev:amd64 (72.1-5) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (2.0.0+dfsg-2) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b4) ... Setting up libboost1.83-tools-dev (1.83.0-3.1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up libp11-kit-dev:amd64 (0.25.5-2) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libxc9:amd64 (5.2.3-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gnuplot-data (6.0.0+dfsg1-3) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up gromacs-data (2024.2-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libboost-wave1.83.0:amd64 (1.83.0-3.1) ... Setting up gettext (0.22.5-2) ... Setting up libgsl-dev (2.8+dfsg-3) ... Setting up libboost-coroutine1.83.0:amd64 (1.83.0-3.1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2+b1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-3.1) ... Setting up libpython3.12-stdlib:amd64 (3.12.4-3) ... Setting up libxpm4:amd64 (1:3.5.17-1+b1) ... Setting up nettle-dev:amd64 (3.10-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-3.1) ... Setting up libtool (2.4.7-7) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-1+b3) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libboost-log1.83.0 (1.83.0-3.1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up python3.12 (3.12.4-3) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libboost-system-dev:amd64 (1.83.0.2+b2) ... Setting up libpugixml-dev:amd64 (1.14-0.1+b1) ... Setting up libaec-dev:amd64 (1.1.3-1) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-3.1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3) ... Setting up libboost-locale1.83.0:amd64 (1.83.0-3.1) ... Setting up libxc-dev (5.2.3-1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libboost-test1.83-dev:amd64 (1.83.0-3.1) ... Setting up libboost-url1.83-dev:amd64 (1.83.0-3.1) ... Setting up libboost-tools-dev (1.83.0.2+b2) ... Setting up libsource-highlight4t64:amd64 (3.1.9-4.3) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-3.1) ... Setting up libboost-exception-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-nowide-dev (1.83.0.2+b2) ... Setting up gfortran-13-x86-64-linux-gnu (13.3.0-4) ... Setting up pkgconf:amd64 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.18-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3) ... Setting up libmaeparser1:amd64 (1.3.1-1+b1) ... Setting up libllvm16t64:amd64 (1:16.0.6-27+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1) ... Setting up libboost-test-dev:amd64 (1.83.0.2+b2) ... Setting up libpython3.12t64:amd64 (3.12.4-3) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.4.7-7+b1) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-3.1) ... Setting up libllvm17t64:amd64 (1:17.0.6-15) ... Setting up pandoc (3.1.3+ds-3) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libboost-container1.83-dev:amd64 (1.83.0-3.1) ... Setting up gfortran-13 (13.3.0-4) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-3.1) ... Setting up libboost-numpy-dev (1.83.0.2+b2) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-3.1) ... Setting up pkg-config:amd64 (1.8.1-3) ... Setting up libgav1-1:amd64 (0.19.0-2+b1) ... Setting up libboost-random1.83-dev:amd64 (1.83.0-3.1) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up libboost-date-time-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:amd64 (1.11.0-7) ... Setting up libjs-sphinxdoc (7.3.7-4) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libgvpr2:amd64 (2.42.4-1) ... Setting up libdrm2:amd64 (2.4.122-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libboost-url-dev:amd64 (1.83.0.2+b2) ... Setting up libhwloc-dev:amd64 (2.11.0-2) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libboost-regex-dev:amd64 (1.83.0.2+b2) ... Setting up libsm6:amd64 (2:1.2.3-1+b1) ... Setting up libarchive13t64:amd64 (3.7.2-2.1) ... Setting up libfftw3-dev:amd64 (3.3.10-1+b3) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libpython3-stdlib:amd64 (3.12.4-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.122-1) ... Setting up libecpint-dev:amd64 (1.0.7-4+b1) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-3.1) ... Setting up libgnutls28-dev:amd64 (3.8.6-2) ... Setting up libnghttp2-dev:amd64 (1.62.1-2) ... Setting up libibverbs1:amd64 (52.0-2) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libavif16:amd64 (1.1.0-3) ... Setting up libboost-json1.83-dev:amd64 (1.83.0-3.1) ... Setting up libboost-wave1.83-dev:amd64 (1.83.0-3.1) ... Setting up libzmq5:amd64 (4.3.5-1+b2) ... Setting up libboost-locale1.83-dev:amd64 (1.83.0-3.1) ... Setting up libdebuginfod-common (0.191-2) ... Setting up libcurl4t64:amd64 (8.9.1-1) ... Setting up ibverbs-providers:amd64 (52.0-2) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3.1) ... Setting up openssh-client (1:9.8p1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:amd64 (1.54.0+ds-1) ... Setting up libboost-type-erasure1.83-dev:amd64 (1.83.0-3.1) ... Setting up libcurl3t64-gnutls:amd64 (8.9.1-1) ... Setting up libboost-random-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-locale-dev:amd64 (1.83.0.2+b2) ... Setting up python3 (3.12.4-1) ... Setting up libpython3.12-dev:amd64 (3.12.4-3) ... Setting up libboost-wave-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up python3-pandocfilters (1.5.1-1) ... Setting up libclang1-16t64 (1:16.0.6-27+b1) ... Setting up libhwloc-plugins:amd64 (2.11.0-2) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b1) ... Setting up libclang-cpp16t64 (1:16.0.6-27+b1) ... Setting up libboost-graph1.83-dev:amd64 (1.83.0-3.1) ... Setting up python3-webencodings (0.5.1-5) ... Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libint2-dev (2.7.2-1.1) ... Setting up python3-platformdirs (4.2.1-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up libboost-container-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-type-erasure-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-context1.83-dev:amd64 (1.83.0-3.1) ... Setting up python3-six (1.16.0-7) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.3) ... Setting up libboost-coroutine1.83-dev:amd64 (1.83.0-3.1) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up doxygen (1.9.8+ds-2+b1) ... Setting up python3-packaging (24.1-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-certifi (2024.6.2-1) ... Setting up libboost-fiber1.83-dev:amd64 (1.83.0-3.1) ... Setting up python3-typeshed (0.0~git20231111.6764465-3) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-nest-asyncio (1.5.4-1) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up sphinx-common (7.3.7-4) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libevent-dev (2.1.12-stable-10) ... Setting up python3-idna (3.6-2.1) ... Setting up python3.12-dev (3.12.4-3) ... Setting up libpmix2t64:amd64 (5.0.3-2) ... Setting up python3-html5lib (1.1-6) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-rpds-py (0.12.0-3+b1) ... Setting up python3-fastjsonschema (2.20.0-1) ... Setting up python3-trove-classifiers (2024.4.10-1) ... Setting up python3-lxml:amd64 (5.2.2-1) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up cmake (3.30.2-1) ... Setting up librdmacm1t64:amd64 (52.0-2) ... Setting up python3-dateutil (2.9.0-2) ... Setting up libboost-coroutine-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-log1.83-dev (1.83.0-3.1) ... Setting up libboost-json-dev:amd64 (1.83.0.2+b2) ... Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-mistune (3.0.2-1) ... Setting up libboost-log-dev (1.83.0.2+b2) ... Setting up python3-soupsieve (2.5-1) ... Setting up python3-jupyter-core (5.7.2-4) ... Setting up libpmix-dev:amd64 (5.0.3-2) ... Setting up libhsakmt1:amd64 (5.7.0-1) ... Setting up python3-cffi-backend:amd64 (1.16.0-2+b3) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ... Setting up libboost-fiber-dev:amd64 (1.83.0.2+b2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-commonmark (0.9.1-6) ... Setting up python3-pkg-resources (70.3.0-2) ... Setting up python3-prompt-toolkit (3.0.47-1) ... Setting up libfabric1:amd64 (1.17.0-3+b1) ... Setting up clang-format-16 (1:16.0.6-27+b1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-tornado (6.4.1-1) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Setting up libboost-graph-dev:amd64 (1.83.0.2+b2) ... Setting up libdebuginfod1t64:amd64 (0.191-2) ... Setting up clang-format:amd64 (1:16.0-58.1) ... Setting up python3-pure-eval (0.2.2-2) ... Setting up libxmu6:amd64 (2:1.1.3-3+b2) ... Setting up python3-tinycss2 (1.3.0-1) ... Setting up libpython3-dev:amd64 (3.12.4-1) ... Setting up python3-setuptools (70.3.0-2) ... Setting up python3-py (1.11.0-2) ... Setting up librdkit1t64 (202309.3-4+b1) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-asttokens (2.4.1-1) ... Setting up python3-charset-normalizer (3.3.2-2) ... Setting up python3-pytest (8.3.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libhdf5-fortran-102t64:amd64 (1.10.10+repack-4) ... Setting up python3-coverage (7.6.0+dfsg1-1) ... Setting up debhelper (13.16) ... Setting up libxaw7:amd64 (2:1.0.14-1+b2) ... Setting up libboost-context-dev:amd64 (1.83.0.2+b2) ... Setting up libibverbs-dev:amd64 (52.0-2) ... Setting up pybind11-dev (2.12.0-1) ... Setting up python3-setuptools-scm (8.1.0-1) ... Setting up python3-bs4 (4.12.3-1) ... Setting up python3-bleach (6.1.0-2) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-comm (0.2.1-1) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up gdb (15.1-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libcurl4-openssl-dev:amd64 (8.9.1-1) ... Setting up python3-executing (2.0.1-0.1) ... Setting up python3-pexpect (4.9-2) ... Setting up python3-zmq (24.0.1-5+b2) ... Setting up python3-dev (3.12.4-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up libboost-python1.83-dev (1.83.0-3.1) ... Setting up librdkit-dev (202309.3-4+b1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up libhsa-runtime64-1 (5.7.1-2) ... Setting up python3-jupyter-client (8.6.2-2) ... Setting up python3-hatchling (1.25.0-1) ... Setting up libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-4) ... Setting up python3-stack-data (0.6.3-1) ... Setting up txt2tags (3.4-4) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up python3-referencing (0.31.0-1) ... Setting up dh-python (6.20240603) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up python3-h5py-serial (3.11.0-5) ... Setting up libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-4) ... Setting up python3-debugpy (1.8.2+ds-5) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up python3-jupyterlab-pygments (0.2.2-3) ... Setting up libamdhip64-5 (5.7.1-4) ... Setting up python3-ipython (8.20.0-1) ... Setting up python3-rdkit (202309.3-4+b1) ... Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-ipykernel (6.29.5-1) ... Setting up python3-h5py (3.11.0-5) ... Setting up python3-jsonschema-specifications (2023.12.1-1) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up python3-jsonschema (4.19.2-3) ... Setting up libopenmpi3t64:amd64 (4.1.6-13.3) ... Setting up libboost-mpi1.83.0 (1.83.0-3.1) ... Setting up openmpi-bin (4.1.6-13.3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libboost-graph-parallel1.83.0 (1.83.0-3.1) ... Setting up libgromacs9:amd64 (2024.2-1) ... Setting up mpi-default-bin (1.17) ... Setting up python3-nbformat (5.9.1-1) ... Setting up gromacs (2024.2-1) ... Setting up python3-nbclient (0.8.0-1) ... Setting up python3-nbconvert (7.16.4-1) ... Setting up libgromacs-dev (2024.2-1) ... Setting up libopenmpi-dev:amd64 (4.1.6-13.3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libboost-graph-parallel1.83-dev (1.83.0-3.1) ... Setting up libboost-mpi-python1.83.0 (1.83.0-3.1) ... Setting up libboost-graph-parallel-dev (1.83.0.2+b2) ... Setting up mpi-default-dev (1.17) ... Setting up libboost-mpi1.83-dev (1.83.0-3.1) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libboost-mpi-python1.83-dev (1.83.0-3.1) ... Setting up libboost-mpi-python-dev (1.83.0.2+b2) ... Setting up libboost-all-dev (1.83.0.2+b2) ... Setting up libheif-plugin-dav1d:amd64 (1.18.1-1) ... Setting up libheif-plugin-libde265:amd64 (1.18.1-1) ... Setting up libheif1:amd64 (1.18.1-1) ... Setting up libgd3:amd64 (2.3.3-12) ... Setting up libgvc6 (2.42.4-1) ... Setting up gnuplot-nox (6.0.0+dfsg1-3) ... update-alternatives: using /usr/bin/gnuplot-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up graphviz (2.42.4-1) ... Processing triggers for libc-bin (2.39-6) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.3.7-4) ... Setting up python3-nbsphinx (0.9.4+ds-1) ... Setting up python3-recommonmark (0.7.1+ds-5) ... /usr/lib/python3/dist-packages/recommonmark/transform.py:254: SyntaxWarning: invalid escape sequence '\w' match = re.search('[ ]?[\w_-]+::.*', language) Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up python3-sphinx-rtd-theme (2.0.0+dfsg-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 aglfn_1.7+git20191031.4036a9c-2 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.21-2.1 bash-completion_1:2.14.0-1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-2 bsdutils_1:2.40.2-2 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 clang-format_1:16.0-58.1 clang-format-16_1:16.0.6-27+b1 cmake_3.30.2-1 cmake-data_3.30.2-1 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240603 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 docutils-common_0.21.2+dfsg-2 doxygen_1.9.8+ds-2+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 fontconfig_2.15.0-1.1 fontconfig-config_2.15.0-1.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-freefont-ttf_20211204+svn4273-2 fonts-lato_2.015-1 fonts-mathjax_2.7.9+dfsg-1 g++_4:14.1.0-2 g++-13_13.3.0-4 g++-13-x86-64-linux-gnu_13.3.0-4 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-4 gcc-13-base_13.3.0-4 gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gdb_15.1-1 gettext_0.22.5-2 gettext-base_0.22.5-2 gfortran-13_13.3.0-4 gfortran-13-x86-64-linux-gnu_13.3.0-4 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gnuplot-data_6.0.0+dfsg1-3 gnuplot-nox_6.0.0+dfsg1-3 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 graphviz_2.42.4-1 grep_3.11-4 groff-base_1.23.0-5 gromacs_2024.2-1 gromacs-data_2024.2-1 gzip_1.12-1.1 hdf5-helpers_1.10.10+repack-4 hostname_3.23+nmu2 ibverbs-providers_52.0-2 icu-devtools_72.1-5 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 isa-support_24 libabsl20230802_20230802.1-4 libacl1_2.3.2-2 libaec-dev_1.1.3-1 libaec0_1.1.3-1 libamd-comgr2_6.0+git20231212.4510c28+dfsg-3+b1 libamdhip64-5_5.7.1-4 libann0_1.1.2+doc-9+b1 libaom3_3.9.1-1 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.2-2.1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libavif16_1.1.0-3 libbabeltrace1_1.5.11-3+b7 libbinutils_2.42.90.20240720-2 libblas3_3.12.0-3 libblkid1_2.40.2-2 libboost-all-dev_1.83.0.2+b2 libboost-atomic-dev_1.83.0.2+b2 libboost-atomic1.83-dev_1.83.0-3.1 libboost-atomic1.83.0_1.83.0-3.1 libboost-chrono-dev_1.83.0.2+b2 libboost-chrono1.83-dev_1.83.0-3.1 libboost-chrono1.83.0t64_1.83.0-3.1 libboost-container-dev_1.83.0.2+b2 libboost-container1.83-dev_1.83.0-3.1 libboost-container1.83.0_1.83.0-3.1 libboost-context-dev_1.83.0.2+b2 libboost-context1.83-dev_1.83.0-3.1 libboost-context1.83.0_1.83.0-3.1 libboost-coroutine-dev_1.83.0.2+b2 libboost-coroutine1.83-dev_1.83.0-3.1 libboost-coroutine1.83.0_1.83.0-3.1 libboost-date-time-dev_1.83.0.2+b2 libboost-date-time1.83-dev_1.83.0-3.1 libboost-date-time1.83.0_1.83.0-3.1 libboost-dev_1.83.0.2+b2 libboost-exception-dev_1.83.0.2+b2 libboost-exception1.83-dev_1.83.0-3.1 libboost-fiber-dev_1.83.0.2+b2 libboost-fiber1.83-dev_1.83.0-3.1 libboost-fiber1.83.0_1.83.0-3.1 libboost-filesystem-dev_1.83.0.2+b2 libboost-filesystem1.83-dev_1.83.0-3.1 libboost-filesystem1.83.0_1.83.0-3.1 libboost-graph-dev_1.83.0.2+b2 libboost-graph-parallel-dev_1.83.0.2+b2 libboost-graph-parallel1.83-dev_1.83.0-3.1 libboost-graph-parallel1.83.0_1.83.0-3.1 libboost-graph1.83-dev_1.83.0-3.1 libboost-graph1.83.0_1.83.0-3.1 libboost-iostreams-dev_1.83.0.2+b2 libboost-iostreams1.83-dev_1.83.0-3.1 libboost-iostreams1.83.0_1.83.0-3.1 libboost-json-dev_1.83.0.2+b2 libboost-json1.83-dev_1.83.0-3.1 libboost-json1.83.0_1.83.0-3.1 libboost-locale-dev_1.83.0.2+b2 libboost-locale1.83-dev_1.83.0-3.1 libboost-locale1.83.0_1.83.0-3.1 libboost-log-dev_1.83.0.2+b2 libboost-log1.83-dev_1.83.0-3.1 libboost-log1.83.0_1.83.0-3.1 libboost-math-dev_1.83.0.2+b2 libboost-math1.83-dev_1.83.0-3.1 libboost-math1.83.0_1.83.0-3.1 libboost-mpi-dev_1.83.0.2+b2 libboost-mpi-python-dev_1.83.0.2+b2 libboost-mpi-python1.83-dev_1.83.0-3.1 libboost-mpi-python1.83.0_1.83.0-3.1 libboost-mpi1.83-dev_1.83.0-3.1 libboost-mpi1.83.0_1.83.0-3.1 libboost-nowide-dev_1.83.0.2+b2 libboost-nowide1.83-dev_1.83.0-3.1 libboost-nowide1.83.0_1.83.0-3.1 libboost-numpy-dev_1.83.0.2+b2 libboost-numpy1.83-dev_1.83.0-3.1 libboost-numpy1.83.0_1.83.0-3.1 libboost-program-options-dev_1.83.0.2+b2 libboost-program-options1.83-dev_1.83.0-3.1 libboost-program-options1.83.0_1.83.0-3.1 libboost-python-dev_1.83.0.2+b2 libboost-python1.83-dev_1.83.0-3.1 libboost-python1.83.0_1.83.0-3.1 libboost-random-dev_1.83.0.2+b2 libboost-random1.83-dev_1.83.0-3.1 libboost-random1.83.0_1.83.0-3.1 libboost-regex-dev_1.83.0.2+b2 libboost-regex1.83-dev_1.83.0-3.1 libboost-regex1.83.0_1.83.0-3.1 libboost-serialization-dev_1.83.0.2+b2 libboost-serialization1.83-dev_1.83.0-3.1 libboost-serialization1.83.0_1.83.0-3.1 libboost-stacktrace-dev_1.83.0.2+b2 libboost-stacktrace1.83-dev_1.83.0-3.1 libboost-stacktrace1.83.0_1.83.0-3.1 libboost-system-dev_1.83.0.2+b2 libboost-system1.83-dev_1.83.0-3.1 libboost-system1.83.0_1.83.0-3.1 libboost-test-dev_1.83.0.2+b2 libboost-test1.83-dev_1.83.0-3.1 libboost-test1.83.0_1.83.0-3.1 libboost-thread-dev_1.83.0.2+b2 libboost-thread1.83-dev_1.83.0-3.1 libboost-thread1.83.0_1.83.0-3.1 libboost-timer-dev_1.83.0.2+b2 libboost-timer1.83-dev_1.83.0-3.1 libboost-timer1.83.0_1.83.0-3.1 libboost-tools-dev_1.83.0.2+b2 libboost-type-erasure-dev_1.83.0.2+b2 libboost-type-erasure1.83-dev_1.83.0-3.1 libboost-type-erasure1.83.0_1.83.0-3.1 libboost-url-dev_1.83.0.2+b2 libboost-url1.83-dev_1.83.0-3.1 libboost-url1.83.0_1.83.0-3.1 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libboost-all-dev, libecpint-dev, libeigen3-dev, libexpat-dev, libfftw3-dev, libgromacs-dev (>= 2024~), libgsl-dev, libhdf5-dev, libint2-dev, librdkit-dev, libsqlite3-dev, libxc-dev, pkgconf, pybind11-dev, python3-h5py, python3-lxml, python3-numpy, python3-pytest, python3-rdkit, python3:any, sphinx-common, txt2tags Build-Depends-Indep: doxygen, gnuplot-nox | gnuplot, graphviz, pandoc, python3-ipykernel, python3-nbsphinx, python3-recommonmark, python3-sphinx, python3-sphinx-rtd-theme Package-List: libvotca-2024 deb libs optional arch=any libvotca-dev deb libdevel optional arch=any votca deb science optional arch=any votca-data deb science optional arch=all votca-tutorials deb science optional arch=all Checksums-Sha1: 50eaa7c493321e490a56523516c85071c33c6bad 38972469 votca_2024.orig.tar.gz 4545ae8493602594d1c8a2a56aea5132483a76c4 205776 votca_2024-2.debian.tar.xz Checksums-Sha256: 7f342e857f4a6ba6d25937f63830afa3c32cbd906255c8d78aa6c500cfd418c8 38972469 votca_2024.orig.tar.gz 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/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network votca_2024-2 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network votca_2024-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-08a0453a-696f-4d36-b351-682a8ab7c03a SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package votca dpkg-buildpackage: info: source version 2024-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nicholas Breen dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with bash-completion,python3,sphinxdoc debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean py3clean /<> rm -rf /<>/.pytest_cache make[1]: Leaving directory '/<>' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building votca using existing ./votca_2024.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building votca in votca_2024-2.debian.tar.xz dpkg-source: info: building votca in votca_2024-2.dsc debian/rules binary dh binary --with bash-completion,python3,sphinxdoc dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ -DBUILD_XTP=TRUE \ -DINSTALL_CSGAPPS=TRUE \ -DINJECT_MARCH_NATIVE=FALSE \ -DBUILD_TESTING=TRUE -DENABLE_REGRESSION_TESTING=TRUE cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_XTP=TRUE -DINSTALL_CSGAPPS=TRUE -DINJECT_MARCH_NATIVE=FALSE -DBUILD_TESTING=TRUE -DENABLE_REGRESSION_TESTING=TRUE .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at CMakeLists.txt:45 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.71.0") found components: unit_test_framework -- Performing Test COMPILER_SUPPORTS-Wall -- Performing Test COMPILER_SUPPORTS-Wall - Success -- Performing Test COMPILER_SUPPORTS-Wextra -- Performing Test COMPILER_SUPPORTS-Wextra - Success -- Performing Test COMPILER_SUPPORTS-Wpedantic -- Performing Test COMPILER_SUPPORTS-Wpedantic - Success -- Performing Test COMPILER_SUPPORTS-Wshadow -- Performing Test COMPILER_SUPPORTS-Wshadow - Success -- Performing Test COMPILER_SUPPORTS-Wconversion -- Performing Test COMPILER_SUPPORTS-Wconversion - Success CMake Warning (dev) at CMakeLists.txt:103 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.71.0") found components: program_options filesystem system regex timer -- Found Eigen3: /usr/share/eigen3/cmake -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found GROMACS: 2024.2 CMake Warning at CMakeLists.txt:122 (message): Gromacs-2020 and above have no support for tabulated interactions, that are needed for coarse-graining (see and comment on https://gitlab.com/gromacs/gromacs/-/issues/1347) -- Found Python: /usr/bin/python3 (found suitable version "3.12.4", minimum required is "3.5") found components: Interpreter -- Found SPHINX: /usr/bin/sphinx-build (found version "7.3.7") -- Could NOT find MKL (missing: MKL_DIR) -- Found OpenMP_CXX: -fopenmp (found suitable version "4.5", minimum required is "4.5") -- Found OpenMP: TRUE (found suitable version "4.5", minimum required is "4.5") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Found FFTW3: /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for C++ include cassert -- Looking for C++ include cassert - found -- Looking for C++ include cmath -- Looking for C++ include cmath - found -- Looking for C++ include fstream -- Looking for C++ include fstream - found -- Looking for C++ include functional -- Looking for C++ include functional - found -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Looking for C++ include limits -- Looking for C++ include limits - found -- Looking for C++ include list -- Looking for C++ include list - found -- Looking for C++ include map -- Looking for C++ include map - found -- Looking for C++ include ostream -- Looking for C++ include ostream - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for C++ include stack -- Looking for C++ include stack - found -- Looking for C++ include stdexcept -- Looking for C++ include stdexcept - found -- Looking for C++ include string -- Looking for C++ include string - found -- Looking for C++ include vector -- Looking for C++ include vector - found -- Found EXPAT: /usr/lib/x86_64-linux-gnu/libexpat.so (found version "2.6.2") -- Found GMX: /usr/bin/gmx_d -- Found UnixCommands: /usr/bin/bash -- Looking for C++ include algorithm -- Looking for C++ include algorithm - found -- Looking for C++ include iomanip -- Looking for C++ include iomanip - found -- Looking for C++ include numeric -- Looking for C++ include numeric - found -- Looking for C++ include cstdlib -- Looking for C++ include cstdlib - found -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: CXX -- Could NOT find LMP (missing: LMP_EXECUTABLE) -- Found python module pytest -- Could NOT find LMP (missing: LMP_EXECUTABLE) -- Could NOT find MDRUN_MPI (missing: MDRUN_MPI_EXECUTABLE) -- Found Python: /usr/bin/python3 (found version "3.12.4") found components: Interpreter Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'espressomd' -- Could NOT find ESPRESSO (missing: IMPORT_ESPRESSO_SUCCESS ESPRESSO_HAS_H5MD_SUCCESS) -- Found Python: /usr/bin/python3 (found suitable version "3.12.4", minimum required is "3") found components: Interpreter Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'espressopp' -- Could NOT find ESPRESSOPP (missing: IMPORT_ESPRESSOPP_SUCCESS) Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'cma' -- Could NOT find CMA (missing: IMPORT_CMA_SUCCESS) -- Found Gnuplot: /usr/bin/gnuplot (found version "6.0.0") -- Use VOTCASHARE=/<>/csg/share PATH=/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:$PATH VOTCA_CSG_DEFAULTS=/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml for out-of-cmake testing -- Found libecpint: /usr/lib/x86_64-linux-gnu/cmake/ecpint -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found suitable version "1.10.10", minimum required is "1.8") found components: CXX CMake Warning at xtp/CMakeLists.txt:24 (message): HDF5 will be used such that it is compatible with version 1.8. -- Found python module lxml -- Found python module h5py -- Found python module rdkit -- Found Python: /usr/include/python3.12 (found suitable version "3.12.4", minimum required is "3.5") found components: Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.12.0") Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'ase' Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'xmltodict' -- Found python module pytest -- Skipping xtp python bindings -- Could NOT find JUPYTER_NBCONVERT (missing: JUPYTER_EXECUTABLE) (Required is at least version "5.4.1") -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Found CLANG_FORMAT: /usr/bin/clang-format (found suitable version "16.0.6", minimum required is "11") -- The following features have been enabled: * BUILD_XTP, Build xtp module * BUILD_TESTING, Enable unit tests * INSTALL_RC_FILES, Install votca rc files (VOTCARC.bash etc.) * BUILD_MANPAGES, Build manpages (disable for cross-compile) * INSTALL_CSGAPPS, Install extra app using csg * ENABLE_REGRESSION_TESTING, Enable regression tests -- The following OPTIONAL packages have been found: * SPHINX * Gnuplot gnuplot needed to run CMA/simplex regression tests * Doxygen Needed to build API documentation * CLANG_FORMAT (required version >= 11) -- The following RECOMMENDED packages have been found: * GROMACS (required version >= 2019.6) Used to read/write gromacs data files * FFTW3 Enables FFT functionality * PkgConfig Used to detect fftw package * pybind11 Used to build xtp python bindings -- The following REQUIRED packages have been found: * boost_unit_test_framework (required version == 1.83.0) * boost_program_options (required version == 1.83.0) * boost_atomic (required version == 1.83.0) * boost_filesystem (required version == 1.83.0) * boost_system (required version == 1.83.0) * boost_regex (required version == 1.83.0) * boost_headers (required version == 1.83.0) * boost_timer (required version == 1.83.0) * Boost (required version >= 1.71.0) Extended C++ libraries * Eigen3 (required version >= 3.3.0) C++ vector data structures * Threads Used for thread parallelization * OpenMP (required version >= 4.5) Used for thread parallelization in tools * EXPAT Used for XML parsing * UnixCommands Used in testing * Libxc Provides exchange-correclation functionals * libint2 Calculates Gaussian integrals * ecpint Calculates Gaussian integrals over pseudo potentials * HDF5 (required version >= 1.8) Used to read h5md data files Used to read/write HDF5 data files * Python (required version >= 3.5) Used in csg scripts and docu Used to build xtp python bindings -- The following features have been disabled: * ENABLE_RPATH_INJECT, Inject rpath into executables * INJECT_MARCH_NATIVE, Add -march=native to CXX flags * BUILD_OWN_GROMACS, Build an internal version of gromacs * BUILD_OWN_LIBINT, Build an internal version of libint * ENABLE_VALGRIND_TESTING, Run unit tests through valgrind, too * ENABLE_EXPERIMENTAL_TESTS, Enable experimental regression tests * USE_CUDA, Use CUDA for GPU acceleration -- The following OPTIONAL packages have not been found: * MKL Enables accelerated performance with MKL * LMP Lammps binary needed to run lammps regression tests * MDRUN_MPI gromacs mpi binary needed to run parallel gromacs regression tests * ESPRESSO ESPResSo MD python module needed to run ESPResSo MD regression tests * ESPRESSOPP ESPResSo++ MD python module needed to run ESPResSo++ MD regression tests * CMA CMA python module needed to run CMA regression tests * JUPYTER_NBCONVERT (required version >= 5.4.1) -- Configuring done (32.1s) -- Generating done (3.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-x86_64-linux-gnu # Override various blhc false positives. blhc: ignore-line-regexp: .*C\+\+ vector data structures.* make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/<>' dh_auto_build cd obj-x86_64-linux-gnu && make -j2 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/libtools/CMakeFiles/gitversion.dir/build.make tools/src/libtools/CMakeFiles/gitversion.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f tools/share/man/CMakeFiles/votca_tools_manpages.dir/build.make tools/share/man/CMakeFiles/votca_tools_manpages.dir/depend cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/libtools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/libtools /<>/obj-x86_64-linux-gnu/tools/src/libtools/CMakeFiles/gitversion.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/share/man /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/share/man /<>/obj-x86_64-linux-gnu/tools/share/man/CMakeFiles/votca_tools_manpages.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/libtools/CMakeFiles/gitversion.dir/build.make tools/src/libtools/CMakeFiles/gitversion.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/cmake -DTOP_SOURCE_DIR="/<>" -DGIT_EXECUTABLE="" -P /<>/CMakeModules/gitversion.cmake make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/share/man/CMakeFiles/votca_tools_manpages.dir/build.make tools/share/man/CMakeFiles/votca_tools_manpages.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/share/man/CMakeFiles/votca_tools_manpages.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target votca_tools_manpages make -f csg/scripts/CMakeFiles/csg_call_manpage.dir/build.make csg/scripts/CMakeFiles/csg_call_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/scripts /<>/obj-x86_64-linux-gnu/csg/scripts/CMakeFiles/csg_call_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/scripts/CMakeFiles/csg_call_manpage.dir/build.make csg/scripts/CMakeFiles/csg_call_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Building csg_call manpage cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call --format groff --out csg_call.man [ 0%] Built target gitversion make -f csg/scripts/CMakeFiles/csg_inverse_manpage.dir/build.make csg/scripts/CMakeFiles/csg_inverse_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/scripts /<>/obj-x86_64-linux-gnu/csg/scripts/CMakeFiles/csg_inverse_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/scripts/CMakeFiles/csg_inverse_manpage.dir/build.make csg/scripts/CMakeFiles/csg_inverse_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 0%] Building csg_inverse manpage cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_inverse --format groff --out csg_inverse.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target csg_call_manpage make -f csg/share/man/CMakeFiles/votca_csg_manpages.dir/build.make csg/share/man/CMakeFiles/votca_csg_manpages.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/share/man /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/share/man /<>/obj-x86_64-linux-gnu/csg/share/man/CMakeFiles/votca_csg_manpages.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/share/man/CMakeFiles/votca_csg_manpages.dir/build.make csg/share/man/CMakeFiles/votca_csg_manpages.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'csg/share/man/CMakeFiles/votca_csg_manpages.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target votca_csg_manpages make -f xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/DependInfo.cmake "--color=" [ 0%] Built target csg_inverse_manpage make -f xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 0%] Building xtp_basisset manpage cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /<>/tools/scripts/votca_help2doc --name /<>/xtp/scripts/xtp_basisset --format groff --out xtp_basisset.man [ 1%] Building xtp_update_mapfile manpage cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /<>/tools/scripts/votca_help2doc --name /<>/xtp/scripts/xtp_update_mapfile --format groff --out xtp_update_mapfile.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_basisset_manpage [ 1%] Built target xtp_update_mapfile_manpage make -f xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/depend make -f xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building xtp_modify_jobfile manpage cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /<>/tools/scripts/votca_help2doc --name /<>/xtp/scripts/xtp_modify_jobfile --format groff --out xtp_modify_jobfile.man [ 1%] Building xtp_autogen_mapping manpage cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /<>/tools/scripts/votca_help2doc --name /<>/xtp/scripts/xtp_autogen_mapping --format groff --out xtp_autogen_mapping.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_modify_jobfile_manpage make -f xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building xtp_qmmm2qm manpage cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /<>/tools/scripts/votca_help2doc --name /<>/xtp/scripts/xtp_qmmm2qm --format groff --out xtp_qmmm2qm.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_autogen_mapping_manpage make -f csg/scripts/CMakeFiles/csg_call_build.dir/build.make csg/scripts/CMakeFiles/csg_call_build.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/scripts /<>/obj-x86_64-linux-gnu/csg/scripts/CMakeFiles/csg_call_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/scripts/CMakeFiles/csg_call_build.dir/build.make csg/scripts/CMakeFiles/csg_call_build.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Generating csg_call cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -DINPUT="csg_call.in2" -DOUTPUT="csg_call.install" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target csg_call_build make -f csg/scripts/CMakeFiles/csg_inverse_build.dir/build.make csg/scripts/CMakeFiles/csg_inverse_build.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/scripts /<>/obj-x86_64-linux-gnu/csg/scripts/CMakeFiles/csg_inverse_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/scripts/CMakeFiles/csg_inverse_build.dir/build.make csg/scripts/CMakeFiles/csg_inverse_build.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_qmmm2qm_manpage make -f xtp/scripts/CMakeFiles/xtp_basisset_build.dir/build.make xtp/scripts/CMakeFiles/xtp_basisset_build.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_basisset_build.dir/DependInfo.cmake "--color=" [ 1%] Generating csg_inverse cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -DINPUT="csg_inverse.in2" -DOUTPUT="csg_inverse.install" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_basisset_build.dir/build.make xtp/scripts/CMakeFiles/xtp_basisset_build.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Generating xtp_basisset cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /usr/bin/cmake -DINPUT="xtp_basisset.in2" -DOUTPUT="xtp_basisset.install" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake [ 1%] Built target csg_inverse_build make -f xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/build.make xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/build.make xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Generating xtp_update_mapfile cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /usr/bin/cmake -DINPUT="xtp_update_mapfile.in2" -DOUTPUT="xtp_update_mapfile.install" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake [ 1%] Built target xtp_basisset_build make -f xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/build.make xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/build.make xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Generating xtp_modify_jobfile cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /usr/bin/cmake -DINPUT="xtp_modify_jobfile.in2" -DOUTPUT="xtp_modify_jobfile.install" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_update_mapfile_build make -f xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/build.make xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/build.make xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_modify_jobfile_build make -f xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/build.make xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/DependInfo.cmake "--color=" [ 1%] Generating xtp_autogen_mapping cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /usr/bin/cmake -DINPUT="xtp_autogen_mapping.in2" -DOUTPUT="xtp_autogen_mapping.install" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/build.make xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Generating xtp_qmmm2qm cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /usr/bin/cmake -DINPUT="xtp_qmmm2qm.in2" -DOUTPUT="xtp_qmmm2qm.install" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_autogen_mapping_build make -f xtp/share/benchmark/CMakeFiles/xtp_benchmark_build.dir/build.make xtp/share/benchmark/CMakeFiles/xtp_benchmark_build.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/share/benchmark /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/share/benchmark /<>/obj-x86_64-linux-gnu/xtp/share/benchmark/CMakeFiles/xtp_benchmark_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/share/benchmark/CMakeFiles/xtp_benchmark_build.dir/build.make xtp/share/benchmark/CMakeFiles/xtp_benchmark_build.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_qmmm2qm_build make -f tools/src/libtools/CMakeFiles/votca_tools.dir/build.make tools/src/libtools/CMakeFiles/votca_tools.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/libtools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/libtools /<>/obj-x86_64-linux-gnu/tools/src/libtools/CMakeFiles/votca_tools.dir/DependInfo.cmake "--color=" [ 1%] Generating xtp_benchmark.install cd /<>/obj-x86_64-linux-gnu/xtp/share/benchmark && /usr/bin/cmake -DINPUT="xtp_benchmark.in2" -DOUTPUT="xtp_benchmark" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/libtools/CMakeFiles/votca_tools.dir/build.make tools/src/libtools/CMakeFiles/votca_tools.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o -MF CMakeFiles/votca_tools.dir/akimaspline.cc.o.d -o CMakeFiles/votca_tools.dir/akimaspline.cc.o -c /<>/tools/src/libtools/akimaspline.cc make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_benchmark_build [ 2%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o -MF CMakeFiles/votca_tools.dir/application.cc.o.d -o CMakeFiles/votca_tools.dir/application.cc.o -c /<>/tools/src/libtools/application.cc [ 2%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o -MF CMakeFiles/votca_tools.dir/calculator.cc.o.d -o CMakeFiles/votca_tools.dir/calculator.cc.o -c /<>/tools/src/libtools/calculator.cc [ 2%] Building CXX object 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/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o -MF CMakeFiles/votca_tools.dir/correlate.cc.o.d -o CMakeFiles/votca_tools.dir/correlate.cc.o -c /<>/tools/src/libtools/correlate.cc [ 2%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o -MF CMakeFiles/votca_tools.dir/crosscorrelate.cc.o.d -o CMakeFiles/votca_tools.dir/crosscorrelate.cc.o -c /<>/tools/src/libtools/crosscorrelate.cc [ 2%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o -MF CMakeFiles/votca_tools.dir/cubicspline.cc.o.d -o CMakeFiles/votca_tools.dir/cubicspline.cc.o -c /<>/tools/src/libtools/cubicspline.cc [ 2%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o -MF CMakeFiles/votca_tools.dir/datacollection.cc.o.d -o CMakeFiles/votca_tools.dir/datacollection.cc.o -c /<>/tools/src/libtools/datacollection.cc [ 2%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o -MF CMakeFiles/votca_tools.dir/edge.cc.o.d -o CMakeFiles/votca_tools.dir/edge.cc.o -c /<>/tools/src/libtools/edge.cc [ 3%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o -MF CMakeFiles/votca_tools.dir/edgecontainer.cc.o.d -o CMakeFiles/votca_tools.dir/edgecontainer.cc.o -c /<>/tools/src/libtools/edgecontainer.cc [ 3%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/eigenio_matrixmarket.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/eigenio_matrixmarket.cc.o -MF CMakeFiles/votca_tools.dir/eigenio_matrixmarket.cc.o.d -o CMakeFiles/votca_tools.dir/eigenio_matrixmarket.cc.o -c /<>/tools/src/libtools/eigenio_matrixmarket.cc [ 3%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/elements.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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tools/src/libtools/CMakeFiles/votca_tools.dir/filesystem.cc.o -MF CMakeFiles/votca_tools.dir/filesystem.cc.o.d -o CMakeFiles/votca_tools.dir/filesystem.cc.o -c /<>/tools/src/libtools/filesystem.cc [ 3%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o -MF 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/<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/graphalgorithm.cc.o -MF CMakeFiles/votca_tools.dir/graphalgorithm.cc.o.d -o CMakeFiles/votca_tools.dir/graphalgorithm.cc.o -c /<>/tools/src/libtools/graphalgorithm.cc [ 5%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/graphdistvisitor.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ 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-DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/graphnode.cc.o -MF CMakeFiles/votca_tools.dir/graphnode.cc.o.d -o CMakeFiles/votca_tools.dir/graphnode.cc.o -c /<>/tools/src/libtools/graphnode.cc [ 5%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/graphvisitor.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS 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-I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o -MF CMakeFiles/votca_tools.dir/histogram.cc.o.d -o CMakeFiles/votca_tools.dir/histogram.cc.o -c /<>/tools/src/libtools/histogram.cc [ 5%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o -MF CMakeFiles/votca_tools.dir/histogramnew.cc.o.d -o CMakeFiles/votca_tools.dir/histogramnew.cc.o -c /<>/tools/src/libtools/histogramnew.cc [ 5%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o -MF CMakeFiles/votca_tools.dir/linalg.cc.o.d -o CMakeFiles/votca_tools.dir/linalg.cc.o -c /<>/tools/src/libtools/linalg.cc [ 5%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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tools/src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o -MF CMakeFiles/votca_tools.dir/mutex.cc.o.d -o CMakeFiles/votca_tools.dir/mutex.cc.o -c /<>/tools/src/libtools/mutex.cc [ 6%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/optionshandler.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/optionshandler.cc.o -MF CMakeFiles/votca_tools.dir/optionshandler.cc.o.d -o CMakeFiles/votca_tools.dir/optionshandler.cc.o -c /<>/tools/src/libtools/optionshandler.cc [ 6%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/property.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/property.cc.o -MF CMakeFiles/votca_tools.dir/property.cc.o.d -o CMakeFiles/votca_tools.dir/property.cc.o -c 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/<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/reducededge.cc.o -MF CMakeFiles/votca_tools.dir/reducededge.cc.o.d -o CMakeFiles/votca_tools.dir/reducededge.cc.o -c /<>/tools/src/libtools/reducededge.cc [ 6%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK 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-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o -MF CMakeFiles/votca_tools.dir/thread.cc.o.d -o CMakeFiles/votca_tools.dir/thread.cc.o -c /<>/tools/src/libtools/thread.cc [ 7%] Building CXX object tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/<>/obj-x86_64-linux-gnu/tools/src/libtools -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/votca_tools.dir/histogram.cc.o CMakeFiles/votca_tools.dir/histogramnew.cc.o CMakeFiles/votca_tools.dir/linalg.cc.o CMakeFiles/votca_tools.dir/linspline.cc.o CMakeFiles/votca_tools.dir/mutex.cc.o CMakeFiles/votca_tools.dir/optionshandler.cc.o CMakeFiles/votca_tools.dir/property.cc.o CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o CMakeFiles/votca_tools.dir/rangeparser.cc.o CMakeFiles/votca_tools.dir/reducededge.cc.o CMakeFiles/votca_tools.dir/reducedgraph.cc.o CMakeFiles/votca_tools.dir/spline.cc.o CMakeFiles/votca_tools.dir/table.cc.o CMakeFiles/votca_tools.dir/thread.cc.o CMakeFiles/votca_tools.dir/tokenizer.cc.o CMakeFiles/votca_tools.dir/version.cc.o /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libexpat.so -lm /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/cmake -E cmake_symlink_library libvotca_tools.so.2024 libvotca_tools.so.2024 libvotca_tools.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target votca_tools make -f csg/src/libcsg/CMakeFiles/votca_csg.dir/build.make csg/src/libcsg/CMakeFiles/votca_csg.dir/depend make -f tools/src/tools/CMakeFiles/votca_property.dir/build.make tools/src/tools/CMakeFiles/votca_property.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tools /<>/obj-x86_64-linux-gnu/tools/src/tools/CMakeFiles/votca_property.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/libcsg /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/libcsg /<>/obj-x86_64-linux-gnu/csg/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tools/CMakeFiles/votca_property.dir/build.make tools/src/tools/CMakeFiles/votca_property.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/libcsg/CMakeFiles/votca_csg.dir/build.make csg/src/libcsg/CMakeFiles/votca_csg.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 7%] Building CXX object tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o -MF CMakeFiles/votca_property.dir/votca_property.cc.o.d -o CMakeFiles/votca_property.dir/votca_property.cc.o -c /<>/tools/src/tools/votca_property.cc [ 7%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o -MF CMakeFiles/votca_csg.dir/beadlist.cc.o.d -o CMakeFiles/votca_csg.dir/beadlist.cc.o -c /<>/csg/src/libcsg/beadlist.cc [ 7%] Linking CXX executable votca_property cd /<>/obj-x86_64-linux-gnu/tools/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/votca_property.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/votca_property.dir/votca_property.cc.o -o votca_property -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target votca_property make -f tools/src/tests/CMakeFiles/unit_test_calculator.dir/build.make tools/src/tests/CMakeFiles/unit_test_calculator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_calculator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_calculator.dir/build.make tools/src/tests/CMakeFiles/unit_test_calculator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 7%] Building CXX object tools/src/tests/CMakeFiles/unit_test_calculator.dir/test_calculator.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_calculator.dir/test_calculator.cc.o -MF CMakeFiles/unit_test_calculator.dir/test_calculator.cc.o.d -o CMakeFiles/unit_test_calculator.dir/test_calculator.cc.o -c /<>/tools/src/tests/test_calculator.cc [ 7%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o -MF CMakeFiles/votca_csg.dir/beadmotif.cc.o.d -o CMakeFiles/votca_csg.dir/beadmotif.cc.o -c /<>/csg/src/libcsg/beadmotif.cc [ 7%] Linking CXX executable unit_test_calculator cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_calculator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_calculator.dir/test_calculator.cc.o -o unit_test_calculator -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target unit_test_calculator make -f tools/src/tests/CMakeFiles/unit_test_constants.dir/build.make tools/src/tests/CMakeFiles/unit_test_constants.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_constants.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_constants.dir/build.make tools/src/tests/CMakeFiles/unit_test_constants.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 7%] Building CXX object tools/src/tests/CMakeFiles/unit_test_constants.dir/test_constants.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_constants.dir/test_constants.cc.o -MF CMakeFiles/unit_test_constants.dir/test_constants.cc.o.d -o CMakeFiles/unit_test_constants.dir/test_constants.cc.o -c /<>/tools/src/tests/test_constants.cc [ 9%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o -MF CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o.d -o CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o -c /<>/csg/src/libcsg/beadmotifalgorithms.cc [ 9%] Linking CXX executable unit_test_constants cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_constants.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_constants.dir/test_constants.cc.o -o unit_test_constants -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 9%] Built target unit_test_constants make -f tools/src/tests/CMakeFiles/unit_test_correlate.dir/build.make tools/src/tests/CMakeFiles/unit_test_correlate.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_correlate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_correlate.dir/build.make tools/src/tests/CMakeFiles/unit_test_correlate.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 9%] Building CXX object tools/src/tests/CMakeFiles/unit_test_correlate.dir/test_correlate.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_correlate.dir/test_correlate.cc.o -MF CMakeFiles/unit_test_correlate.dir/test_correlate.cc.o.d -o CMakeFiles/unit_test_correlate.dir/test_correlate.cc.o -c /<>/tools/src/tests/test_correlate.cc [ 9%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o -MF CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o.d -o CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o -c /<>/csg/src/libcsg/beadmotifconnector.cc [ 10%] Linking CXX executable unit_test_correlate cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_correlate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_correlate.dir/test_correlate.cc.o -o unit_test_correlate -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target unit_test_correlate make -f tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/build.make tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/build.make tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/test_crosscorrelate.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/test_crosscorrelate.cc.o -MF CMakeFiles/unit_test_crosscorrelate.dir/test_crosscorrelate.cc.o.d -o CMakeFiles/unit_test_crosscorrelate.dir/test_crosscorrelate.cc.o -c /<>/tools/src/tests/test_crosscorrelate.cc [ 10%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructure.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructure.cc.o -MF CMakeFiles/votca_csg.dir/beadstructure.cc.o.d -o CMakeFiles/votca_csg.dir/beadstructure.cc.o -c /<>/csg/src/libcsg/beadstructure.cc [ 10%] Linking CXX executable unit_test_crosscorrelate cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_crosscorrelate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_crosscorrelate.dir/test_crosscorrelate.cc.o -o unit_test_crosscorrelate -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target unit_test_crosscorrelate make -f tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/test_cubicspline.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/test_cubicspline.cc.o -MF CMakeFiles/unit_test_cubicspline.dir/test_cubicspline.cc.o.d -o CMakeFiles/unit_test_cubicspline.dir/test_cubicspline.cc.o -c /<>/tools/src/tests/test_cubicspline.cc [ 10%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o -MF CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o.d -o CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o -c /<>/csg/src/libcsg/beadstructurealgorithms.cc [ 11%] Linking CXX executable unit_test_cubicspline cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_cubicspline.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_cubicspline.dir/test_cubicspline.cc.o -o unit_test_cubicspline -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 11%] Built target unit_test_cubicspline make -f tools/src/tests/CMakeFiles/unit_test_datacollection.dir/build.make tools/src/tests/CMakeFiles/unit_test_datacollection.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_datacollection.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_datacollection.dir/build.make tools/src/tests/CMakeFiles/unit_test_datacollection.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 11%] Building CXX object tools/src/tests/CMakeFiles/unit_test_datacollection.dir/test_datacollection.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_datacollection.dir/test_datacollection.cc.o -MF CMakeFiles/unit_test_datacollection.dir/test_datacollection.cc.o.d -o CMakeFiles/unit_test_datacollection.dir/test_datacollection.cc.o -c /<>/tools/src/tests/test_datacollection.cc [ 11%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o -MF CMakeFiles/votca_csg.dir/boundarycondition.cc.o.d -o CMakeFiles/votca_csg.dir/boundarycondition.cc.o -c /<>/csg/src/libcsg/boundarycondition.cc [ 11%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o -MF CMakeFiles/votca_csg.dir/cgengine.cc.o.d -o CMakeFiles/votca_csg.dir/cgengine.cc.o -c /<>/csg/src/libcsg/cgengine.cc [ 11%] Linking CXX executable unit_test_datacollection cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_datacollection.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_datacollection.dir/test_datacollection.cc.o -o unit_test_datacollection -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 11%] Built target unit_test_datacollection make -f tools/src/tests/CMakeFiles/unit_test_edge_base.dir/build.make tools/src/tests/CMakeFiles/unit_test_edge_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_edge_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_edge_base.dir/build.make tools/src/tests/CMakeFiles/unit_test_edge_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 11%] Building CXX object tools/src/tests/CMakeFiles/unit_test_edge_base.dir/test_edge_base.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_edge_base.dir/test_edge_base.cc.o -MF CMakeFiles/unit_test_edge_base.dir/test_edge_base.cc.o.d -o CMakeFiles/unit_test_edge_base.dir/test_edge_base.cc.o -c /<>/tools/src/tests/test_edge_base.cc [ 11%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -MF CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o.d -o CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -c /<>/csg/src/libcsg/cgmoleculedef.cc [ 11%] Linking CXX executable unit_test_edge_base cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_edge_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_edge_base.dir/test_edge_base.cc.o -o unit_test_edge_base -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 11%] Built target unit_test_edge_base make -f tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/build.make tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/build.make tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 11%] Building CXX object tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/test_edgecontainer.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/test_edgecontainer.cc.o -MF CMakeFiles/unit_test_edgecontainer.dir/test_edgecontainer.cc.o.d -o CMakeFiles/unit_test_edgecontainer.dir/test_edgecontainer.cc.o -c /<>/tools/src/tests/test_edgecontainer.cc [ 12%] Linking CXX executable unit_test_edgecontainer cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_edgecontainer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_edgecontainer.dir/test_edgecontainer.cc.o -o unit_test_edgecontainer -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target unit_test_edgecontainer make -f tools/src/tests/CMakeFiles/unit_test_elements.dir/build.make tools/src/tests/CMakeFiles/unit_test_elements.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_elements.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_elements.dir/build.make tools/src/tests/CMakeFiles/unit_test_elements.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tools/src/tests/CMakeFiles/unit_test_elements.dir/test_elements.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_elements.dir/test_elements.cc.o -MF CMakeFiles/unit_test_elements.dir/test_elements.cc.o.d -o CMakeFiles/unit_test_elements.dir/test_elements.cc.o -c /<>/tools/src/tests/test_elements.cc [ 14%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o -MF CMakeFiles/votca_csg.dir/csgapplication.cc.o.d -o CMakeFiles/votca_csg.dir/csgapplication.cc.o -c /<>/csg/src/libcsg/csgapplication.cc [ 14%] Linking CXX executable unit_test_elements cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E 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'/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_filesystem.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_filesystem.dir/build.make tools/src/tests/CMakeFiles/unit_test_filesystem.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tools/src/tests/CMakeFiles/unit_test_filesystem.dir/test_filesystem.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_filesystem.dir/test_filesystem.cc.o -MF CMakeFiles/unit_test_filesystem.dir/test_filesystem.cc.o.d -o CMakeFiles/unit_test_filesystem.dir/test_filesystem.cc.o -c /<>/tools/src/tests/test_filesystem.cc [ 14%] Linking CXX executable unit_test_filesystem cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_filesystem.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now 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"--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/build.make tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 15%] Building CXX object tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/test_floatingpointcomparison.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/test_floatingpointcomparison.cc.o -MF CMakeFiles/unit_test_floatingpointcomparison.dir/test_floatingpointcomparison.cc.o.d -o CMakeFiles/unit_test_floatingpointcomparison.dir/test_floatingpointcomparison.cc.o -c /<>/tools/src/tests/test_floatingpointcomparison.cc [ 15%] Linking CXX executable unit_test_floatingpointcomparison cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_floatingpointcomparison.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_floatingpointcomparison.dir/test_floatingpointcomparison.cc.o -o unit_test_floatingpointcomparison -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target unit_test_floatingpointcomparison make -f tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 16%] Building CXX object tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/test_graphalgorithm.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/test_graphalgorithm.cc.o -MF CMakeFiles/unit_test_graphalgorithm.dir/test_graphalgorithm.cc.o.d -o CMakeFiles/unit_test_graphalgorithm.dir/test_graphalgorithm.cc.o -c /<>/tools/src/tests/test_graphalgorithm.cc [ 18%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o -MF CMakeFiles/votca_csg.dir/exclusionlist.cc.o.d -o CMakeFiles/votca_csg.dir/exclusionlist.cc.o -c /<>/csg/src/libcsg/exclusionlist.cc [ 18%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o -MF CMakeFiles/votca_csg.dir/imcio.cc.o.d -o CMakeFiles/votca_csg.dir/imcio.cc.o -c /<>/csg/src/libcsg/imcio.cc [ 18%] Linking CXX executable unit_test_graphalgorithm cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_graphalgorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_graphalgorithm.dir/test_graphalgorithm.cc.o -o unit_test_graphalgorithm -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target unit_test_graphalgorithm [ 18%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -MF CMakeFiles/votca_csg.dir/map.cc.o.d -o CMakeFiles/votca_csg.dir/map.cc.o -c /<>/csg/src/libcsg/map.cc [ 18%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o -MF CMakeFiles/votca_csg.dir/molecule.cc.o.d -o CMakeFiles/votca_csg.dir/molecule.cc.o -c /<>/csg/src/libcsg/molecule.cc [ 18%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o -MF CMakeFiles/votca_csg.dir/nblist.cc.o.d -o CMakeFiles/votca_csg.dir/nblist.cc.o -c /<>/csg/src/libcsg/nblist.cc [ 18%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o -MF CMakeFiles/votca_csg.dir/nblist_3body.cc.o.d -o CMakeFiles/votca_csg.dir/nblist_3body.cc.o -c /<>/csg/src/libcsg/nblist_3body.cc [ 18%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o -MF CMakeFiles/votca_csg.dir/nblistgrid.cc.o.d -o CMakeFiles/votca_csg.dir/nblistgrid.cc.o -c /<>/csg/src/libcsg/nblistgrid.cc [ 18%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -MF CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o.d -o CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -c /<>/csg/src/libcsg/nblistgrid_3body.cc [ 19%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o -MF CMakeFiles/votca_csg.dir/nematicorder.cc.o.d -o CMakeFiles/votca_csg.dir/nematicorder.cc.o -c /<>/csg/src/libcsg/nematicorder.cc [ 19%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o -MF CMakeFiles/votca_csg.dir/openbox.cc.o.d -o CMakeFiles/votca_csg.dir/openbox.cc.o -c /<>/csg/src/libcsg/openbox.cc [ 19%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -MF CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o.d -o CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -c /<>/csg/src/libcsg/orthorhombicbox.cc make -f tools/src/tests/CMakeFiles/unit_test_graph_base.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graph_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graph_base.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object tools/src/tests/CMakeFiles/unit_test_graph_base.dir/test_graph_base.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graph_base.dir/test_graph_base.cc.o -MF CMakeFiles/unit_test_graph_base.dir/test_graph_base.cc.o.d -o CMakeFiles/unit_test_graph_base.dir/test_graph_base.cc.o -c /<>/tools/src/tests/test_graph_base.cc [ 19%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o -MF CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o.d -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o -c /<>/csg/src/libcsg/potentialfunctions/potentialfunction.cc [ 19%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o -MF CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o.d -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o -c /<>/csg/src/libcsg/potentialfunctions/potentialfunctioncbspl.cc [ 19%] Linking CXX executable unit_test_graph_base cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_graph_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_graph_base.dir/test_graph_base.cc.o -o unit_test_graph_base -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target unit_test_graph_base make -f tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/test_graph_bf_visitor.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/test_graph_bf_visitor.cc.o -MF CMakeFiles/unit_test_graph_bf_visitor.dir/test_graph_bf_visitor.cc.o.d -o CMakeFiles/unit_test_graph_bf_visitor.dir/test_graph_bf_visitor.cc.o -c /<>/tools/src/tests/test_graph_bf_visitor.cc [ 19%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o -MF CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o.d -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o -c /<>/csg/src/libcsg/potentialfunctions/potentialfunctionlj126.cc [ 19%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o -MF CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o.d -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o -c /<>/csg/src/libcsg/potentialfunctions/potentialfunctionljg.cc [ 19%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/topology.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/topology.cc.o -MF CMakeFiles/votca_csg.dir/topology.cc.o.d -o CMakeFiles/votca_csg.dir/topology.cc.o -c /<>/csg/src/libcsg/topology.cc [ 19%] Linking CXX executable unit_test_graph_bf_visitor cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_graph_bf_visitor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_graph_bf_visitor.dir/test_graph_bf_visitor.cc.o -o unit_test_graph_bf_visitor -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target unit_test_graph_bf_visitor [ 20%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o -MF CMakeFiles/votca_csg.dir/topologymap.cc.o.d -o CMakeFiles/votca_csg.dir/topologymap.cc.o -c /<>/csg/src/libcsg/topologymap.cc [ 20%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o -MF CMakeFiles/votca_csg.dir/topologyreader.cc.o.d -o CMakeFiles/votca_csg.dir/topologyreader.cc.o -c /<>/csg/src/libcsg/topologyreader.cc [ 20%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o -MF CMakeFiles/votca_csg.dir/trajectoryreader.cc.o.d -o CMakeFiles/votca_csg.dir/trajectoryreader.cc.o -c /<>/csg/src/libcsg/trajectoryreader.cc make -f tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 20%] Building CXX object tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/test_graph_df_visitor.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/test_graph_df_visitor.cc.o -MF CMakeFiles/unit_test_graph_df_visitor.dir/test_graph_df_visitor.cc.o.d -o CMakeFiles/unit_test_graph_df_visitor.dir/test_graph_df_visitor.cc.o -c /<>/tools/src/tests/test_graph_df_visitor.cc [ 20%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectorywriter.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectorywriter.cc.o -MF CMakeFiles/votca_csg.dir/trajectorywriter.cc.o.d -o CMakeFiles/votca_csg.dir/trajectorywriter.cc.o -c /<>/csg/src/libcsg/trajectorywriter.cc [ 20%] Linking CXX executable unit_test_graph_df_visitor cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_graph_df_visitor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_graph_df_visitor.dir/test_graph_df_visitor.cc.o -o unit_test_graph_df_visitor -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target unit_test_graph_df_visitor make -f tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 20%] Building CXX object tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/test_graphdistvisitor.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/test_graphdistvisitor.cc.o -MF CMakeFiles/unit_test_graphdistvisitor.dir/test_graphdistvisitor.cc.o.d -o CMakeFiles/unit_test_graphdistvisitor.dir/test_graphdistvisitor.cc.o -c /<>/tools/src/tests/test_graphdistvisitor.cc [ 20%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o -MF CMakeFiles/votca_csg.dir/triclinicbox.cc.o.d -o CMakeFiles/votca_csg.dir/triclinicbox.cc.o -c /<>/csg/src/libcsg/triclinicbox.cc [ 20%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o -MF CMakeFiles/votca_csg.dir/version.cc.o.d -o CMakeFiles/votca_csg.dir/version.cc.o -c /<>/csg/src/libcsg/version.cc [ 20%] Linking CXX executable unit_test_graphdistvisitor cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_graphdistvisitor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_graphdistvisitor.dir/test_graphdistvisitor.cc.o -o unit_test_graphdistvisitor -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target unit_test_graphdistvisitor make -f tools/src/tests/CMakeFiles/unit_test_graphnode.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphnode.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphnode.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graphnode.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphnode.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 20%] Building CXX object tools/src/tests/CMakeFiles/unit_test_graphnode.dir/test_graphnode.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graphnode.dir/test_graphnode.cc.o -MF CMakeFiles/unit_test_graphnode.dir/test_graphnode.cc.o.d -o CMakeFiles/unit_test_graphnode.dir/test_graphnode.cc.o -c /<>/tools/src/tests/test_graphnode.cc [ 20%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -c /<>/csg/src/libcsg/modules/io/dlpolytopologyreader.cc [ 20%] Linking CXX executable unit_test_graphnode cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_graphnode.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_graphnode.dir/test_graphnode.cc.o -o unit_test_graphnode -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target unit_test_graphnode make -f tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 20%] Building CXX object tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/test_graphvisitor.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/test_graphvisitor.cc.o -MF CMakeFiles/unit_test_graphvisitor.dir/test_graphvisitor.cc.o.d -o CMakeFiles/unit_test_graphvisitor.dir/test_graphvisitor.cc.o -c /<>/tools/src/tests/test_graphvisitor.cc [ 20%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o.d -o 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/usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_histogramnew.dir/test_histogramnew.cc.o -o unit_test_histogramnew -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target unit_test_histogramnew make -f tools/src/tests/CMakeFiles/unit_test_identity.dir/build.make tools/src/tests/CMakeFiles/unit_test_identity.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_identity.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_identity.dir/build.make tools/src/tests/CMakeFiles/unit_test_identity.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tools/src/tests/CMakeFiles/unit_test_identity.dir/test_identity.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_identity.dir/test_identity.cc.o -MF CMakeFiles/unit_test_identity.dir/test_identity.cc.o.d -o CMakeFiles/unit_test_identity.dir/test_identity.cc.o -c /<>/tools/src/tests/test_identity.cc [ 23%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -c /<>/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc [ 23%] Linking CXX executable unit_test_identity cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_identity.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_identity.dir/test_identity.cc.o -o unit_test_identity -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target unit_test_identity make -f tools/src/tests/CMakeFiles/unit_test_linalg.dir/build.make tools/src/tests/CMakeFiles/unit_test_linalg.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_linalg.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_linalg.dir/build.make tools/src/tests/CMakeFiles/unit_test_linalg.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object tools/src/tests/CMakeFiles/unit_test_linalg.dir/test_linalg.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_linalg.dir/test_linalg.cc.o -MF CMakeFiles/unit_test_linalg.dir/test_linalg.cc.o.d -o CMakeFiles/unit_test_linalg.dir/test_linalg.cc.o -c /<>/tools/src/tests/test_linalg.cc [ 24%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -c /<>/csg/src/libcsg/modules/io/groreader.cc [ 24%] Linking CXX executable unit_test_linalg cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_linalg.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_linalg.dir/test_linalg.cc.o -o unit_test_linalg -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target unit_test_linalg [ 24%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o -c /<>/csg/src/libcsg/modules/io/growriter.cc [ 24%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o -c /<>/csg/src/libcsg/modules/io/lammpsdatareader.cc make -f tools/src/tests/CMakeFiles/unit_test_name.dir/build.make tools/src/tests/CMakeFiles/unit_test_name.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_name.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_name.dir/build.make tools/src/tests/CMakeFiles/unit_test_name.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object tools/src/tests/CMakeFiles/unit_test_name.dir/test_name.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_name.dir/test_name.cc.o -MF CMakeFiles/unit_test_name.dir/test_name.cc.o.d -o CMakeFiles/unit_test_name.dir/test_name.cc.o -c /<>/tools/src/tests/test_name.cc [ 25%] Linking CXX executable unit_test_name cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_name.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_name.dir/test_name.cc.o -o unit_test_name -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target unit_test_name make -f tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/build.make tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/build.make tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building CXX object tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/test_objectfactory.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/test_objectfactory.cc.o -MF CMakeFiles/unit_test_objectfactory.dir/test_objectfactory.cc.o.d -o CMakeFiles/unit_test_objectfactory.dir/test_objectfactory.cc.o -c /<>/tools/src/tests/test_objectfactory.cc [ 27%] Linking CXX executable unit_test_objectfactory cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_objectfactory.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_objectfactory.dir/test_objectfactory.cc.o -o unit_test_objectfactory -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target unit_test_objectfactory make -f tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/build.make tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/build.make tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building CXX object tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/test_optionshandler.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/test_optionshandler.cc.o -MF CMakeFiles/unit_test_optionshandler.dir/test_optionshandler.cc.o.d -o CMakeFiles/unit_test_optionshandler.dir/test_optionshandler.cc.o -c /<>/tools/src/tests/test_optionshandler.cc [ 27%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o -c /<>/csg/src/libcsg/modules/io/lammpsdumpreader.cc [ 27%] Linking CXX executable unit_test_optionshandler cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_optionshandler.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_optionshandler.dir/test_optionshandler.cc.o -o unit_test_optionshandler -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target unit_test_optionshandler make -f tools/src/tests/CMakeFiles/unit_test_property.dir/build.make tools/src/tests/CMakeFiles/unit_test_property.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_property.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_property.dir/build.make tools/src/tests/CMakeFiles/unit_test_property.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building CXX object tools/src/tests/CMakeFiles/unit_test_property.dir/test_property.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_property.dir/test_property.cc.o -MF CMakeFiles/unit_test_property.dir/test_property.cc.o.d -o CMakeFiles/unit_test_property.dir/test_property.cc.o -c /<>/tools/src/tests/test_property.cc [ 27%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o -c /<>/csg/src/libcsg/modules/io/lammpsdumpwriter.cc [ 27%] Linking CXX executable unit_test_property cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_property.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_property.dir/test_property.cc.o -o unit_test_property -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target unit_test_property make -f tools/src/tests/CMakeFiles/unit_test_reducededge.dir/build.make tools/src/tests/CMakeFiles/unit_test_reducededge.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_reducededge.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_reducededge.dir/build.make tools/src/tests/CMakeFiles/unit_test_reducededge.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building CXX object tools/src/tests/CMakeFiles/unit_test_reducededge.dir/test_reducededge.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_reducededge.dir/test_reducededge.cc.o -MF CMakeFiles/unit_test_reducededge.dir/test_reducededge.cc.o.d -o CMakeFiles/unit_test_reducededge.dir/test_reducededge.cc.o -c /<>/tools/src/tests/test_reducededge.cc [ 27%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -c /<>/csg/src/libcsg/modules/io/pdbreader.cc [ 27%] Linking CXX executable unit_test_reducededge cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_reducededge.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_reducededge.dir/test_reducededge.cc.o -o unit_test_reducededge -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target unit_test_reducededge make -f tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/build.make tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/build.make tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building CXX object tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/test_reducedgraph.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/test_reducedgraph.cc.o -MF CMakeFiles/unit_test_reducedgraph.dir/test_reducedgraph.cc.o.d -o CMakeFiles/unit_test_reducedgraph.dir/test_reducedgraph.cc.o -c /<>/tools/src/tests/test_reducedgraph.cc [ 27%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o -c /<>/csg/src/libcsg/modules/io/pdbwriter.cc [ 27%] Linking CXX executable unit_test_reducedgraph cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_reducedgraph.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_reducedgraph.dir/test_reducedgraph.cc.o -o unit_test_reducedgraph -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target unit_test_reducedgraph make -f tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/build.make tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/build.make tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building CXX object tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/test_structureparameters.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/test_structureparameters.cc.o -MF CMakeFiles/unit_test_structureparameters.dir/test_structureparameters.cc.o.d -o CMakeFiles/unit_test_structureparameters.dir/test_structureparameters.cc.o -c /<>/tools/src/tests/test_structureparameters.cc [ 27%] Linking CXX executable unit_test_structureparameters cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_structureparameters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_structureparameters.dir/test_structureparameters.cc.o -o unit_test_structureparameters -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target unit_test_structureparameters make -f tools/src/tests/CMakeFiles/unit_test_table.dir/build.make tools/src/tests/CMakeFiles/unit_test_table.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_table.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_table.dir/build.make tools/src/tests/CMakeFiles/unit_test_table.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building CXX object tools/src/tests/CMakeFiles/unit_test_table.dir/test_table.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_table.dir/test_table.cc.o -MF CMakeFiles/unit_test_table.dir/test_table.cc.o.d -o CMakeFiles/unit_test_table.dir/test_table.cc.o -c /<>/tools/src/tests/test_table.cc [ 28%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o -c /<>/csg/src/libcsg/modules/io/xmltopologyreader.cc [ 29%] Linking CXX executable unit_test_table cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_table.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_table.dir/test_table.cc.o -o unit_test_table -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_table make -f tools/src/tests/CMakeFiles/unit_test_thread.dir/build.make tools/src/tests/CMakeFiles/unit_test_thread.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_thread.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_thread.dir/build.make tools/src/tests/CMakeFiles/unit_test_thread.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tools/src/tests/CMakeFiles/unit_test_thread.dir/test_thread.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_thread.dir/test_thread.cc.o -MF CMakeFiles/unit_test_thread.dir/test_thread.cc.o.d -o CMakeFiles/unit_test_thread.dir/test_thread.cc.o -c /<>/tools/src/tests/test_thread.cc [ 29%] Linking CXX executable unit_test_thread cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script 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/<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/build.make tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/test_tokenizer.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/test_tokenizer.cc.o -MF CMakeFiles/unit_test_tokenizer.dir/test_tokenizer.cc.o.d -o CMakeFiles/unit_test_tokenizer.dir/test_tokenizer.cc.o -c /<>/tools/src/tests/test_tokenizer.cc [ 29%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o -c /<>/csg/src/libcsg/modules/io/xyzreader.cc [ 29%] Linking CXX executable unit_test_tokenizer cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_tokenizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_tokenizer.dir/test_tokenizer.cc.o -o unit_test_tokenizer -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_tokenizer make -f tools/src/tests/CMakeFiles/unit_test_random.dir/build.make tools/src/tests/CMakeFiles/unit_test_random.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_random.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_random.dir/build.make tools/src/tests/CMakeFiles/unit_test_random.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tools/src/tests/CMakeFiles/unit_test_random.dir/test_random.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_random.dir/test_random.cc.o -MF CMakeFiles/unit_test_random.dir/test_random.cc.o.d -o CMakeFiles/unit_test_random.dir/test_random.cc.o -c /<>/tools/src/tests/test_random.cc [ 29%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o -c /<>/csg/src/libcsg/modules/io/xyzwriter.cc [ 29%] Linking CXX executable unit_test_random cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_random.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_random.dir/test_random.cc.o -o unit_test_random -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_random make -f tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/test_akimaspline.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/test_akimaspline.cc.o -MF CMakeFiles/unit_test_akimaspline.dir/test_akimaspline.cc.o.d -o CMakeFiles/unit_test_akimaspline.dir/test_akimaspline.cc.o -c /<>/tools/src/tests/test_akimaspline.cc [ 29%] Linking CXX executable unit_test_akimaspline cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_akimaspline.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_akimaspline.dir/test_akimaspline.cc.o -o unit_test_akimaspline -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_akimaspline make -f tools/src/tests/CMakeFiles/unit_test_linspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_linspline.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_linspline.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_linspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_linspline.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tools/src/tests/CMakeFiles/unit_test_linspline.dir/test_linspline.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_linspline.dir/test_linspline.cc.o -MF CMakeFiles/unit_test_linspline.dir/test_linspline.cc.o.d -o CMakeFiles/unit_test_linspline.dir/test_linspline.cc.o -c /<>/tools/src/tests/test_linspline.cc [ 29%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o -c /<>/csg/src/libcsg/modules/io/gmxtopologyreader.cc [ 29%] Linking CXX executable unit_test_linspline cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_linspline.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_linspline.dir/test_linspline.cc.o -o unit_test_linspline -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_linspline make -f tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/build.make tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/build.make tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/test_unitconverter.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/test_unitconverter.cc.o -MF CMakeFiles/unit_test_unitconverter.dir/test_unitconverter.cc.o.d -o CMakeFiles/unit_test_unitconverter.dir/test_unitconverter.cc.o -c /<>/tools/src/tests/test_unitconverter.cc [ 29%] Linking CXX executable unit_test_unitconverter cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_unitconverter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_unitconverter.dir/test_unitconverter.cc.o -o unit_test_unitconverter -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_unitconverter make -f tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/build.make tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/build.make tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/test_NDimVector.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/test_NDimVector.cc.o -MF CMakeFiles/unit_test_NDimVector.dir/test_NDimVector.cc.o.d -o CMakeFiles/unit_test_NDimVector.dir/test_NDimVector.cc.o -c /<>/tools/src/tests/test_NDimVector.cc [ 29%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o -c /<>/csg/src/libcsg/modules/io/gmxtrajectoryreader.cc [ 29%] Linking CXX executable unit_test_NDimVector cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_NDimVector.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_NDimVector.dir/test_NDimVector.cc.o -o unit_test_NDimVector -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_NDimVector [ 29%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o -c /<>/csg/src/libcsg/modules/io/gmxtrajectorywriter.cc make -f tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/build.make tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/build.make tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/test_eigenio_matrixmarket.cc.o cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/<>/tools/src/tests/DataFiles\" -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/test_eigenio_matrixmarket.cc.o -MF CMakeFiles/unit_test_eigenio_matrixmarket.dir/test_eigenio_matrixmarket.cc.o.d -o CMakeFiles/unit_test_eigenio_matrixmarket.dir/test_eigenio_matrixmarket.cc.o -c /<>/tools/src/tests/test_eigenio_matrixmarket.cc [ 29%] Building CXX object csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/csg/src/libcsg -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o -c /<>/csg/src/libcsg/modules/io/h5mdtrajectoryreader.cc [ 29%] Linking CXX executable unit_test_eigenio_matrixmarket cd /<>/obj-x86_64-linux-gnu/tools/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_eigenio_matrixmarket.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_eigenio_matrixmarket.dir/test_eigenio_matrixmarket.cc.o -o unit_test_eigenio_matrixmarket -Wl,-rpath,/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_eigenio_matrixmarket make -f tools/src/tools/CMakeFiles/votca_property_manpage.dir/build.make tools/src/tools/CMakeFiles/votca_property_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tools /<>/obj-x86_64-linux-gnu/tools/src/tools/CMakeFiles/votca_property_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tools/CMakeFiles/votca_property_manpage.dir/build.make tools/src/tools/CMakeFiles/votca_property_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building votca_property manpage cd /<>/obj-x86_64-linux-gnu/tools/src/tools && /<>/tools/scripts/votca_help2doc --name votca_property --format groff --out votca_property.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target votca_property_manpage [ 29%] Linking CXX shared library libvotca_csg.so cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/cmake -E cmake_link_script CMakeFiles/votca_csg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libvotca_csg.so.2024 -o libvotca_csg.so.2024 CMakeFiles/votca_csg.dir/beadlist.cc.o CMakeFiles/votca_csg.dir/beadmotif.cc.o CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o CMakeFiles/votca_csg.dir/beadstructure.cc.o CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o CMakeFiles/votca_csg.dir/boundarycondition.cc.o CMakeFiles/votca_csg.dir/cgengine.cc.o CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o CMakeFiles/votca_csg.dir/csgapplication.cc.o CMakeFiles/votca_csg.dir/exclusionlist.cc.o CMakeFiles/votca_csg.dir/imcio.cc.o CMakeFiles/votca_csg.dir/map.cc.o CMakeFiles/votca_csg.dir/molecule.cc.o CMakeFiles/votca_csg.dir/nblist.cc.o CMakeFiles/votca_csg.dir/nblist_3body.cc.o CMakeFiles/votca_csg.dir/nblistgrid.cc.o CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o CMakeFiles/votca_csg.dir/nematicorder.cc.o CMakeFiles/votca_csg.dir/openbox.cc.o CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o CMakeFiles/votca_csg.dir/topology.cc.o CMakeFiles/votca_csg.dir/topologymap.cc.o CMakeFiles/votca_csg.dir/topologyreader.cc.o CMakeFiles/votca_csg.dir/trajectoryreader.cc.o CMakeFiles/votca_csg.dir/trajectorywriter.cc.o CMakeFiles/votca_csg.dir/triclinicbox.cc.o CMakeFiles/votca_csg.dir/version.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial:/<>/obj-x86_64-linux-gnu/tools/src/libtools: /usr/lib/x86_64-linux-gnu/libgromacs.so.9.0.0 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libfftw3.so cd /<>/obj-x86_64-linux-gnu/csg/src/libcsg && /usr/bin/cmake -E cmake_symlink_library libvotca_csg.so.2024 libvotca_csg.so.2024 libvotca_csg.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target votca_csg make -f xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build.make xtp/src/libxtp/CMakeFiles/votca_xtp.dir/depend make -f csg/src/tools/CMakeFiles/csg_reupdate.dir/build.make csg/src/tools/CMakeFiles/csg_reupdate.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_reupdate.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/libxtp /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/libxtp /<>/obj-x86_64-linux-gnu/xtp/src/libxtp/CMakeFiles/votca_xtp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_reupdate.dir/build.make csg/src/tools/CMakeFiles/csg_reupdate.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build.make xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object csg/src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -MF CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o.d -o CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -c /<>/csg/src/tools/csg_reupdate.cc [ 29%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/GaussianQuadratureBase.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/GaussianQuadratureBase.cc.o -MF CMakeFiles/votca_xtp.dir/GaussianQuadratureBase.cc.o.d -o CMakeFiles/votca_xtp.dir/GaussianQuadratureBase.cc.o -c /<>/xtp/src/libxtp/GaussianQuadratureBase.cc [ 29%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/ImaginaryAxisIntegration.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/ImaginaryAxisIntegration.cc.o -MF CMakeFiles/votca_xtp.dir/ImaginaryAxisIntegration.cc.o.d -o CMakeFiles/votca_xtp.dir/ImaginaryAxisIntegration.cc.o -c /<>/xtp/src/libxtp/ImaginaryAxisIntegration.cc [ 29%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/IndexParser.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/IndexParser.cc.o -MF CMakeFiles/votca_xtp.dir/IndexParser.cc.o.d -o CMakeFiles/votca_xtp.dir/IndexParser.cc.o -c /<>/xtp/src/libxtp/IndexParser.cc [ 29%] Linking CXX executable csg_reupdate cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_reupdate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -o csg_reupdate -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target csg_reupdate make -f csg/src/tools/CMakeFiles/csg_map.dir/build.make csg/src/tools/CMakeFiles/csg_map.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_map.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_map.dir/build.make csg/src/tools/CMakeFiles/csg_map.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object csg/src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o -MF CMakeFiles/csg_map.dir/csg_map.cc.o.d -o CMakeFiles/csg_map.dir/csg_map.cc.o -c /<>/csg/src/tools/csg_map.cc [ 32%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/activedensitymatrix.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/activedensitymatrix.cc.o -MF CMakeFiles/votca_xtp.dir/activedensitymatrix.cc.o.d -o CMakeFiles/votca_xtp.dir/activedensitymatrix.cc.o -c /<>/xtp/src/libxtp/activedensitymatrix.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/activedensitymatrix.h:24, from /<>/xtp/src/libxtp/activedensitymatrix.cc:34: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 32%] Linking CXX executable csg_map cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_map.dir/csg_map.cc.o -o csg_map -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target csg_map make -f csg/src/tools/CMakeFiles/csg_dump.dir/build.make csg/src/tools/CMakeFiles/csg_dump.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_dump.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dump.dir/build.make csg/src/tools/CMakeFiles/csg_dump.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object csg/src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o -MF CMakeFiles/csg_dump.dir/csg_dump.cc.o.d -o CMakeFiles/csg_dump.dir/csg_dump.cc.o -c /<>/csg/src/tools/csg_dump.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 32%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/anderson_mixing.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/anderson_mixing.cc.o -MF CMakeFiles/votca_xtp.dir/anderson_mixing.cc.o.d -o CMakeFiles/votca_xtp.dir/anderson_mixing.cc.o -c /<>/xtp/src/libxtp/anderson_mixing.cc [ 32%] Linking CXX executable csg_dump cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dump.dir/csg_dump.cc.o -o csg_dump -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target csg_dump make -f csg/src/tools/CMakeFiles/csg_property.dir/build.make csg/src/tools/CMakeFiles/csg_property.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_property.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_property.dir/build.make csg/src/tools/CMakeFiles/csg_property.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object csg/src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o -MF CMakeFiles/csg_property.dir/csg_property.cc.o.d -o CMakeFiles/csg_property.dir/csg_property.cc.o -c /<>/csg/src/tools/csg_property.cc [ 32%] Linking CXX executable csg_property cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_property.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_property.dir/csg_property.cc.o -o csg_property -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target csg_property make -f csg/src/tools/CMakeFiles/csg_resample.dir/build.make csg/src/tools/CMakeFiles/csg_resample.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_resample.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_resample.dir/build.make csg/src/tools/CMakeFiles/csg_resample.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object csg/src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o -MF CMakeFiles/csg_resample.dir/csg_resample.cc.o.d -o CMakeFiles/csg_resample.dir/csg_resample.cc.o -c /<>/csg/src/tools/csg_resample.cc [ 32%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aobasis.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aobasis.cc.o -MF CMakeFiles/votca_xtp.dir/aobasis.cc.o.d -o CMakeFiles/votca_xtp.dir/aobasis.cc.o -c /<>/xtp/src/libxtp/aobasis.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/src/libxtp/aobasis.cc:23: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::AOGaussianPrimitive; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/src/libxtp/aobasis.cc:150:39: required from here 150 | w.openTable("Contractions", numofprimitives); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 33%] Linking CXX executable csg_resample cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_resample.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_resample.dir/csg_resample.cc.o -o csg_resample -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target csg_resample make -f csg/src/tools/CMakeFiles/csg_stat.dir/build.make csg/src/tools/CMakeFiles/csg_stat.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_stat.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_stat.dir/build.make csg/src/tools/CMakeFiles/csg_stat.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Building CXX object csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat.cc.o -MF CMakeFiles/csg_stat.dir/csg_stat.cc.o.d -o CMakeFiles/csg_stat.dir/csg_stat.cc.o -c /<>/csg/src/tools/csg_stat.cc [ 33%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aoecp.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aoecp.cc.o -MF CMakeFiles/votca_xtp.dir/aomatrices/aoecp.cc.o.d -o CMakeFiles/votca_xtp.dir/aomatrices/aoecp.cc.o -c /<>/xtp/src/libxtp/aomatrices/aoecp.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/aopotential.h:26, from /<>/xtp/src/libxtp/aomatrices/aoecp.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 33%] Building CXX object csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -MF CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o.d -o CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -c /<>/csg/src/tools/csg_stat_imc.cc [ 33%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aomatrix.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aomatrix.cc.o -MF CMakeFiles/votca_xtp.dir/aomatrices/aomatrix.cc.o.d -o CMakeFiles/votca_xtp.dir/aomatrices/aomatrix.cc.o -c /<>/xtp/src/libxtp/aomatrices/aomatrix.cc [ 33%] Linking CXX executable csg_stat cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_stat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_stat.dir/csg_stat.cc.o CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -o csg_stat -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target csg_stat make -f csg/src/tools/CMakeFiles/csg_fmatch.dir/build.make csg/src/tools/CMakeFiles/csg_fmatch.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_fmatch.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_fmatch.dir/build.make csg/src/tools/CMakeFiles/csg_fmatch.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Building CXX object csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -MF CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o.d -o CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -c /<>/csg/src/tools/csg_fmatch.cc [ 33%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aomultipole.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aomultipole.cc.o -MF CMakeFiles/votca_xtp.dir/aomatrices/aomultipole.cc.o.d -o CMakeFiles/votca_xtp.dir/aomatrices/aomultipole.cc.o -c /<>/xtp/src/libxtp/aomatrices/aomultipole.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/aopotential.h:26, from /<>/xtp/src/libxtp/aomatrices/aomultipole.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 33%] Linking CXX executable csg_fmatch cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_fmatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -o csg_fmatch -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target csg_fmatch make -f csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build.make csg/src/tools/CMakeFiles/csg_gmxtopol.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_gmxtopol.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build.make csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object csg/src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -MF CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o.d -o CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -c /<>/csg/src/tools/csg_gmxtopol.cc [ 35%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aoplanewave.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aoplanewave.cc.o -MF CMakeFiles/votca_xtp.dir/aomatrices/aoplanewave.cc.o.d -o CMakeFiles/votca_xtp.dir/aomatrices/aoplanewave.cc.o -c /<>/xtp/src/libxtp/aomatrices/aoplanewave.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/aopotential.h:26, from /<>/xtp/src/libxtp/aomatrices/aoplanewave.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 35%] Linking CXX executable csg_gmxtopol cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_gmxtopol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -o csg_gmxtopol -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target csg_gmxtopol make -f csg/src/tools/CMakeFiles/csg_dlptopol.dir/build.make csg/src/tools/CMakeFiles/csg_dlptopol.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_dlptopol.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dlptopol.dir/build.make csg/src/tools/CMakeFiles/csg_dlptopol.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -MF CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o.d -o CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -c /<>/csg/src/tools/csg_dlptopol.cc [ 35%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aopotential.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aopotential.cc.o -MF CMakeFiles/votca_xtp.dir/aomatrices/aopotential.cc.o.d -o CMakeFiles/votca_xtp.dir/aomatrices/aopotential.cc.o -c /<>/xtp/src/libxtp/aomatrices/aopotential.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/aopotential.h:26, from /<>/xtp/src/libxtp/aomatrices/aopotential.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 36%] Linking CXX executable csg_dlptopol cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dlptopol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -o csg_dlptopol -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target csg_dlptopol make -f csg/src/tools/CMakeFiles/csg_density.dir/build.make csg/src/tools/CMakeFiles/csg_density.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_density.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_density.dir/build.make csg/src/tools/CMakeFiles/csg_density.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Building CXX object csg/src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o -MF CMakeFiles/csg_density.dir/csg_density.cc.o.d -o CMakeFiles/csg_density.dir/csg_density.cc.o -c /<>/csg/src/tools/csg_density.cc [ 37%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aotransform.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aotransform.cc.o -MF CMakeFiles/votca_xtp.dir/aomatrices/aotransform.cc.o.d -o CMakeFiles/votca_xtp.dir/aomatrices/aotransform.cc.o -c /<>/xtp/src/libxtp/aomatrices/aotransform.cc [ 37%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aoshell.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aoshell.cc.o -MF CMakeFiles/votca_xtp.dir/aoshell.cc.o.d -o CMakeFiles/votca_xtp.dir/aoshell.cc.o -c /<>/xtp/src/libxtp/aoshell.cc [ 37%] Linking CXX executable csg_density cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_density.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_density.dir/csg_density.cc.o -o csg_density -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a In file included from /<>/xtp/src/libxtp/aoshell.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpointtable.h:30: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target csg_density make -f csg/src/tools/CMakeFiles/csg_imc_solve.dir/build.make csg/src/tools/CMakeFiles/csg_imc_solve.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_imc_solve.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_imc_solve.dir/build.make csg/src/tools/CMakeFiles/csg_imc_solve.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -MF CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o.d -o CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -c /<>/csg/src/tools/csg_imc_solve.cc [ 37%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/atom.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/atom.cc.o -MF CMakeFiles/votca_xtp.dir/atom.cc.o.d -o CMakeFiles/votca_xtp.dir/atom.cc.o -c /<>/xtp/src/libxtp/atom.cc In file included from /<>/xtp/src/libxtp/atom.cc:25: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpointtable.h:30: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 37%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/basisset.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/basisset.cc.o -MF CMakeFiles/votca_xtp.dir/basisset.cc.o.d -o CMakeFiles/votca_xtp.dir/basisset.cc.o -c /<>/xtp/src/libxtp/basisset.cc [ 37%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/bfgs_trm.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/bfgs_trm.cc.o -MF CMakeFiles/votca_xtp.dir/bfgs_trm.cc.o.d -o CMakeFiles/votca_xtp.dir/bfgs_trm.cc.o -c /<>/xtp/src/libxtp/bfgs_trm.cc [ 37%] Linking CXX executable csg_imc_solve cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_imc_solve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -o csg_imc_solve -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target csg_imc_solve make -f csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 38%] Building CXX object csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o -MF CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o.d -o CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o -c /<>/csg/src/csg_boltzmann/bondedstatistics.cc [ 38%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/bsecoupling.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/bsecoupling.cc.o -MF CMakeFiles/votca_xtp.dir/bsecoupling.cc.o.d -o CMakeFiles/votca_xtp.dir/bsecoupling.cc.o -c /<>/xtp/src/libxtp/bsecoupling.cc [ 38%] Building CXX object csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o -MF CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o.d -o CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o -c /<>/csg/src/csg_boltzmann/stdanalysis.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/bse.h:26, from /<>/xtp/src/libxtp/bsecoupling.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 38%] Building CXX object csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -MF CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o.d -o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -c /<>/csg/src/csg_boltzmann/tabulatedpotential.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target votca_csg_boltzmann make -f csg/src/csgapps/CMakeFiles/fluctuations.dir/build.make csg/src/csgapps/CMakeFiles/fluctuations.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/fluctuations.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/fluctuations.dir/build.make csg/src/csgapps/CMakeFiles/fluctuations.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 38%] Building CXX object csg/src/csgapps/CMakeFiles/fluctuations.dir/fluctuations/fluctuations.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/fluctuations.dir/fluctuations/fluctuations.cc.o -MF CMakeFiles/fluctuations.dir/fluctuations/fluctuations.cc.o.d -o CMakeFiles/fluctuations.dir/fluctuations/fluctuations.cc.o -c /<>/csg/src/csgapps/fluctuations/fluctuations.cc [ 38%] Linking CXX executable fluctuations/csg_fluctuations cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fluctuations.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/fluctuations.dir/fluctuations/fluctuations.cc.o -o fluctuations/csg_fluctuations -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target fluctuations make -f csg/src/csgapps/CMakeFiles/orientcorr.dir/build.make csg/src/csgapps/CMakeFiles/orientcorr.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/orientcorr.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/orientcorr.dir/build.make csg/src/csgapps/CMakeFiles/orientcorr.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 38%] Building CXX object csg/src/csgapps/CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o -MF CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o.d -o CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o -c /<>/csg/src/csgapps/orientcorr/orientcorr.cc [ 38%] Linking CXX executable orientcorr/csg_orientcorr cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/orientcorr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o -o orientcorr/csg_orientcorr -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target orientcorr [ 38%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/eanalyze.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/eanalyze.cc.o -MF CMakeFiles/votca_xtp.dir/calculators/eanalyze.cc.o.d -o CMakeFiles/votca_xtp.dir/calculators/eanalyze.cc.o -c /<>/xtp/src/libxtp/calculators/eanalyze.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/src/libxtp/calculators/eanalyze.h:36, from /<>/xtp/src/libxtp/calculators/eanalyze.cc:19: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 38%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/einternal.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/einternal.cc.o -MF CMakeFiles/votca_xtp.dir/calculators/einternal.cc.o.d -o CMakeFiles/votca_xtp.dir/calculators/einternal.cc.o -c /<>/xtp/src/libxtp/calculators/einternal.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/src/libxtp/calculators/einternal.cc:19: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 40%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/ianalyze.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/ianalyze.cc.o -MF CMakeFiles/votca_xtp.dir/calculators/ianalyze.cc.o.d -o CMakeFiles/votca_xtp.dir/calculators/ianalyze.cc.o -c /<>/xtp/src/libxtp/calculators/ianalyze.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 40%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o -MF CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o.d -o CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o -c /<>/xtp/src/libxtp/calculators/kmclifetime.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/src/libxtp/calculators/ianalyze.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/gnode.h:25, from /<>/xtp/src/libxtp/calculators/kmclifetime.cc:32: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make -f csg/src/csgapps/CMakeFiles/part_dist.dir/build.make csg/src/csgapps/CMakeFiles/part_dist.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/part_dist.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/part_dist.dir/build.make csg/src/csgapps/CMakeFiles/part_dist.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object csg/src/csgapps/CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -MF CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o.d -o CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -c /<>/csg/src/csgapps/part_dist/part_dist.cc [ 40%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmcmultiple.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmcmultiple.cc.o -MF CMakeFiles/votca_xtp.dir/calculators/kmcmultiple.cc.o.d -o CMakeFiles/votca_xtp.dir/calculators/kmcmultiple.cc.o -c /<>/xtp/src/libxtp/calculators/kmcmultiple.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/gnode.h:25, from /<>/xtp/src/libxtp/calculators/kmcmultiple.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 41%] Linking CXX executable part_dist/csg_part_dist cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/part_dist.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -o part_dist/csg_part_dist -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 41%] Built target part_dist make -f csg/src/csgapps/CMakeFiles/partial_rdf.dir/build.make csg/src/csgapps/CMakeFiles/partial_rdf.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/partial_rdf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/partial_rdf.dir/build.make csg/src/csgapps/CMakeFiles/partial_rdf.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 41%] Building CXX object csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o -MF CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o.d -o CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o -c /<>/csg/src/csgapps/partial_rdf/partial_rdf.cc [ 41%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/neighborlist.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/neighborlist.cc.o -MF CMakeFiles/votca_xtp.dir/calculators/neighborlist.cc.o.d -o CMakeFiles/votca_xtp.dir/calculators/neighborlist.cc.o -c /<>/xtp/src/libxtp/calculators/neighborlist.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/src/libxtp/calculators/neighborlist.h:30, from /<>/xtp/src/libxtp/calculators/neighborlist.cc:23: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 41%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/vaverage.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/vaverage.cc.o -MF CMakeFiles/votca_xtp.dir/calculators/vaverage.cc.o.d -o CMakeFiles/votca_xtp.dir/calculators/vaverage.cc.o -c /<>/xtp/src/libxtp/calculators/vaverage.cc [ 41%] Building CXX object csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -MF CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o.d -o CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -c /<>/csg/src/csgapps/partial_rdf/rdf_calculator.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/src/libxtp/calculators/vaverage.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 41%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/checkpoint.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/checkpoint.cc.o -MF CMakeFiles/votca_xtp.dir/checkpoint.cc.o.d -o CMakeFiles/votca_xtp.dir/checkpoint.cc.o -c /<>/xtp/src/libxtp/checkpoint.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/src/libxtp/checkpoint.cc:32: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/src/libxtp/checkpoint.cc: In constructor ‘votca::xtp::CheckpointFile::CheckpointFile(std::string, votca::xtp::CheckpointAccessLevel)’: /<>/xtp/src/libxtp/checkpoint.cc:74:59: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 74 | fileHandle_ = H5::H5File(fileName_, H5F_ACC_RDONLY); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:47: /usr/include/hdf5/serial/H5File.h:104:5: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 104 | H5File(const H5File &original); | ^~~~~~ /usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’: /usr/include/hdf5/serial/H5File.h:24:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 24 | class H5_DLLCPP H5File : public Group { | ^~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/src/libxtp/checkpoint.cc: In constructor ‘votca::xtp::CheckpointFile::CheckpointFile(std::string, votca::xtp::CheckpointAccessLevel)’: /<>/xtp/src/libxtp/checkpoint.cc:74:59: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here 74 | fileHandle_ = H5::H5File(fileName_, H5F_ACC_RDONLY); | ^ /<>/xtp/src/libxtp/checkpoint.cc:77:67: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 77 | fileHandle_ = H5::H5File(fileName_, H5F_ACC_TRUNC, fcpList); | ^ /usr/include/hdf5/serial/H5File.h:104:5: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 104 | H5File(const H5File &original); | ^~~~~~ /<>/xtp/src/libxtp/checkpoint.cc:81:69: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 81 | fileHandle_ = H5::H5File(fileName_, H5F_ACC_TRUNC, fcpList); | ^ /usr/include/hdf5/serial/H5File.h:104:5: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 104 | H5File(const H5File &original); | ^~~~~~ /<>/xtp/src/libxtp/checkpoint.cc:83:68: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 83 | fileHandle_ = H5::H5File(fileName_, H5F_ACC_RDWR, fcpList); | ^ /usr/include/hdf5/serial/H5File.h:104:5: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 104 | H5File(const H5File &original); | ^~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 41%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/classicalsegment.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/classicalsegment.cc.o -MF CMakeFiles/votca_xtp.dir/classicalsegment.cc.o.d -o CMakeFiles/votca_xtp.dir/classicalsegment.cc.o -c /<>/xtp/src/libxtp/classicalsegment.cc [ 41%] Linking CXX executable partial_rdf/csg_partial_rdf cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/partial_rdf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -o partial_rdf/csg_partial_rdf -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 41%] Built target partial_rdf make -f csg/src/csgapps/CMakeFiles/radii.dir/build.make csg/src/csgapps/CMakeFiles/radii.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/radii.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/radii.dir/build.make csg/src/csgapps/CMakeFiles/radii.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 41%] Building CXX object csg/src/csgapps/CMakeFiles/radii.dir/radii/radii.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/radii.dir/radii/radii.cc.o -MF CMakeFiles/radii.dir/radii/radii.cc.o.d -o CMakeFiles/radii.dir/radii/radii.cc.o -c /<>/csg/src/csgapps/radii/radii.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/src/libxtp/classicalsegment.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 41%] Linking CXX executable radii/csg_radii cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/radii.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/radii.dir/radii/radii.cc.o -o radii/csg_radii -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 41%] Built target radii make -f csg/src/csgapps/CMakeFiles/sphericalorder.dir/build.make csg/src/csgapps/CMakeFiles/sphericalorder.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/sphericalorder.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/sphericalorder.dir/build.make csg/src/csgapps/CMakeFiles/sphericalorder.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 41%] Building CXX object csg/src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -MF CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o.d -o CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -c /<>/csg/src/csgapps/sphericalorder/sphericalorder.cc [ 41%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/couplingbase.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/couplingbase.cc.o -MF CMakeFiles/votca_xtp.dir/couplingbase.cc.o.d -o CMakeFiles/votca_xtp.dir/couplingbase.cc.o -c /<>/xtp/src/libxtp/couplingbase.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/couplingbase.h:29, from /<>/xtp/src/libxtp/couplingbase.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 41%] Linking CXX executable sphericalorder/csg_sphericalorder cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphericalorder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -o sphericalorder/csg_sphericalorder -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 41%] Built target sphericalorder [ 42%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/cubefile_writer.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/cubefile_writer.cc.o -MF CMakeFiles/votca_xtp.dir/cubefile_writer.cc.o.d -o CMakeFiles/votca_xtp.dir/cubefile_writer.cc.o -c /<>/xtp/src/libxtp/cubefile_writer.cc make -f csg/src/csgapps/CMakeFiles/traj_force.dir/build.make csg/src/csgapps/CMakeFiles/traj_force.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/traj_force.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/traj_force.dir/build.make csg/src/csgapps/CMakeFiles/traj_force.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object csg/src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -MF CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o.d -o CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -c /<>/csg/src/csgapps/traj_force/traj_force.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/cubefile_writer.h:26, from /<>/xtp/src/libxtp/cubefile_writer.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 42%] Linking CXX executable traj_force/csg_traj_force cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/traj_force.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -o traj_force/csg_traj_force -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target traj_force make -f csg/src/tests/CMakeFiles/unit_test_bead.dir/build.make csg/src/tests/CMakeFiles/unit_test_bead.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_bead.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_bead.dir/build.make csg/src/tests/CMakeFiles/unit_test_bead.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object csg/src/tests/CMakeFiles/unit_test_bead.dir/test_bead.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_bead.dir/test_bead.cc.o -MF CMakeFiles/unit_test_bead.dir/test_bead.cc.o.d -o CMakeFiles/unit_test_bead.dir/test_bead.cc.o -c /<>/csg/src/tests/test_bead.cc [ 42%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/davidsonsolver.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/davidsonsolver.cc.o -MF CMakeFiles/votca_xtp.dir/davidsonsolver.cc.o.d -o CMakeFiles/votca_xtp.dir/davidsonsolver.cc.o -c /<>/xtp/src/libxtp/davidsonsolver.cc [ 42%] Linking CXX executable unit_test_bead cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_bead.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_bead.dir/test_bead.cc.o -o unit_test_bead -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target unit_test_bead make -f csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/test_beadtriple.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/test_beadtriple.cc.o -MF CMakeFiles/unit_test_beadtriple.dir/test_beadtriple.cc.o.d -o CMakeFiles/unit_test_beadtriple.dir/test_beadtriple.cc.o -c /<>/csg/src/tests/test_beadtriple.cc [ 42%] Linking CXX executable unit_test_beadtriple cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_beadtriple.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_beadtriple.dir/test_beadtriple.cc.o -o unit_test_beadtriple -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target unit_test_beadtriple make -f csg/src/tests/CMakeFiles/unit_test_basebead.dir/build.make csg/src/tests/CMakeFiles/unit_test_basebead.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_basebead.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_basebead.dir/build.make csg/src/tests/CMakeFiles/unit_test_basebead.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object csg/src/tests/CMakeFiles/unit_test_basebead.dir/test_basebead.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_basebead.dir/test_basebead.cc.o -MF CMakeFiles/unit_test_basebead.dir/test_basebead.cc.o.d -o CMakeFiles/unit_test_basebead.dir/test_basebead.cc.o -c /<>/csg/src/tests/test_basebead.cc [ 42%] Linking CXX executable unit_test_basebead cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_basebead.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_basebead.dir/test_basebead.cc.o -o unit_test_basebead -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target unit_test_basebead make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o -MF CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o.d -o CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o -c /<>/csg/src/tests/test_beadmotif_algorithms.cc [ 44%] Linking CXX executable unit_test_beadmotif_algorithms cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_beadmotif_algorithms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o -o unit_test_beadmotif_algorithms -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target unit_test_beadmotif_algorithms make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Building CXX object csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/test_beadmotif_base.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/test_beadmotif_base.cc.o -MF CMakeFiles/unit_test_beadmotif_base.dir/test_beadmotif_base.cc.o.d -o CMakeFiles/unit_test_beadmotif_base.dir/test_beadmotif_base.cc.o -c /<>/csg/src/tests/test_beadmotif_base.cc [ 44%] Linking CXX executable unit_test_beadmotif_base cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_beadmotif_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_beadmotif_base.dir/test_beadmotif_base.cc.o -o unit_test_beadmotif_base -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target unit_test_beadmotif_base make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Building CXX object csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/test_beadmotif_connector.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/test_beadmotif_connector.cc.o -MF CMakeFiles/unit_test_beadmotif_connector.dir/test_beadmotif_connector.cc.o.d -o CMakeFiles/unit_test_beadmotif_connector.dir/test_beadmotif_connector.cc.o -c /<>/csg/src/tests/test_beadmotif_connector.cc [ 44%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftcoupling.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftcoupling.cc.o -MF CMakeFiles/votca_xtp.dir/dftcoupling.cc.o.d -o CMakeFiles/votca_xtp.dir/dftcoupling.cc.o -c /<>/xtp/src/libxtp/dftcoupling.cc [ 44%] Linking CXX executable unit_test_beadmotif_connector cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_beadmotif_connector.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_beadmotif_connector.dir/test_beadmotif_connector.cc.o -o unit_test_beadmotif_connector -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target unit_test_beadmotif_connector [ 44%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/ERIs.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/ERIs.cc.o -MF CMakeFiles/votca_xtp.dir/dftengine/ERIs.cc.o.d -o CMakeFiles/votca_xtp.dir/dftengine/ERIs.cc.o -c /<>/xtp/src/libxtp/dftengine/ERIs.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/couplingbase.h:29, from /<>/xtp/include/votca/xtp/dftcoupling.h:25, from /<>/xtp/src/libxtp/dftcoupling.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 44%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/adiis.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/adiis.cc.o -MF CMakeFiles/votca_xtp.dir/dftengine/adiis.cc.o.d -o CMakeFiles/votca_xtp.dir/dftengine/adiis.cc.o -c /<>/xtp/src/libxtp/dftengine/adiis.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make -f csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Building CXX object csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/test_beadstructure_base.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/test_beadstructure_base.cc.o -MF CMakeFiles/unit_test_beadstructure_base.dir/test_beadstructure_base.cc.o.d -o CMakeFiles/unit_test_beadstructure_base.dir/test_beadstructure_base.cc.o -c /<>/csg/src/tests/test_beadstructure_base.cc [ 45%] Linking CXX executable unit_test_beadstructure_base cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_beadstructure_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_beadstructure_base.dir/test_beadstructure_base.cc.o -o unit_test_beadstructure_base -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target unit_test_beadstructure_base make -f csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building CXX object csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/test_beadstructure_algorithms.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/test_beadstructure_algorithms.cc.o -MF CMakeFiles/unit_test_beadstructure_algorithms.dir/test_beadstructure_algorithms.cc.o.d -o CMakeFiles/unit_test_beadstructure_algorithms.dir/test_beadstructure_algorithms.cc.o -c /<>/csg/src/tests/test_beadstructure_algorithms.cc [ 45%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/convergenceacc.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/convergenceacc.cc.o -MF CMakeFiles/votca_xtp.dir/dftengine/convergenceacc.cc.o.d -o CMakeFiles/votca_xtp.dir/dftengine/convergenceacc.cc.o -c /<>/xtp/src/libxtp/dftengine/convergenceacc.cc [ 45%] Linking CXX executable unit_test_beadstructure_algorithms cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_beadstructure_algorithms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_beadstructure_algorithms.dir/test_beadstructure_algorithms.cc.o -o unit_test_beadstructure_algorithms -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target unit_test_beadstructure_algorithms make -f csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/build.make csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/build.make csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building CXX object csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/test_bondedstatistics.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/test_bondedstatistics.cc.o -MF CMakeFiles/unit_test_bondedstatistics.dir/test_bondedstatistics.cc.o.d -o CMakeFiles/unit_test_bondedstatistics.dir/test_bondedstatistics.cc.o -c /<>/csg/src/tests/test_bondedstatistics.cc [ 45%] Linking CXX executable unit_test_bondedstatistics cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_bondedstatistics.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_bondedstatistics.dir/test_bondedstatistics.cc.o ../csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o ../csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o ../csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -o unit_test_bondedstatistics -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target unit_test_bondedstatistics make -f csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/build.make csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/build.make csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building CXX object csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/test_csg_topology.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/test_csg_topology.cc.o -MF CMakeFiles/unit_test_csg_topology.dir/test_csg_topology.cc.o.d -o CMakeFiles/unit_test_csg_topology.dir/test_csg_topology.cc.o -c /<>/csg/src/tests/test_csg_topology.cc [ 45%] Linking CXX executable unit_test_csg_topology cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_csg_topology.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_csg_topology.dir/test_csg_topology.cc.o -o unit_test_csg_topology -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target unit_test_csg_topology make -f csg/src/tests/CMakeFiles/unit_test_interaction.dir/build.make csg/src/tests/CMakeFiles/unit_test_interaction.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_interaction.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_interaction.dir/build.make csg/src/tests/CMakeFiles/unit_test_interaction.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object csg/src/tests/CMakeFiles/unit_test_interaction.dir/test_interaction.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_interaction.dir/test_interaction.cc.o -MF CMakeFiles/unit_test_interaction.dir/test_interaction.cc.o.d -o CMakeFiles/unit_test_interaction.dir/test_interaction.cc.o -c /<>/csg/src/tests/test_interaction.cc [ 46%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/dftengine.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/dftengine.cc.o -MF CMakeFiles/votca_xtp.dir/dftengine/dftengine.cc.o.d -o CMakeFiles/votca_xtp.dir/dftengine/dftengine.cc.o -c /<>/xtp/src/libxtp/dftengine/dftengine.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/activedensitymatrix.h:24, from /<>/xtp/src/libxtp/dftengine/dftengine.cc:32: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 46%] Linking CXX executable unit_test_interaction cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_interaction.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_interaction.dir/test_interaction.cc.o -o unit_test_interaction -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target unit_test_interaction make -f csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/build.make csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/build.make csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/test_lammpsdatareader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/test_lammpsdatareader.cc.o -MF CMakeFiles/unit_test_lammpsdatareader.dir/test_lammpsdatareader.cc.o.d -o CMakeFiles/unit_test_lammpsdatareader.dir/test_lammpsdatareader.cc.o -c /<>/csg/src/tests/test_lammpsdatareader.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 46%] Linking CXX executable unit_test_lammpsdatareader cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_lammpsdatareader.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_lammpsdatareader.dir/test_lammpsdatareader.cc.o -o unit_test_lammpsdatareader -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target unit_test_lammpsdatareader [ 46%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/diis.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/diis.cc.o -MF CMakeFiles/votca_xtp.dir/dftengine/diis.cc.o.d -o CMakeFiles/votca_xtp.dir/dftengine/diis.cc.o -c /<>/xtp/src/libxtp/dftengine/diis.cc make -f csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/build.make csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/build.make csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o -MF CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o.d -o CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o -c /<>/csg/src/tests/test_lammpsdumpreaderwriter.cc [ 48%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/embeddingengine.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/dftengine/embeddingengine.cc.o -MF CMakeFiles/votca_xtp.dir/dftengine/embeddingengine.cc.o.d -o CMakeFiles/votca_xtp.dir/dftengine/embeddingengine.cc.o -c /<>/xtp/src/libxtp/dftengine/embeddingengine.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/activedensitymatrix.h:24, from /<>/xtp/src/libxtp/dftengine/embeddingengine.cc:49: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 48%] Linking CXX executable unit_test_lammpsdumpreaderwriter cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o -o unit_test_lammpsdumpreaderwriter -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 48%] Built target unit_test_lammpsdumpreaderwriter make -f csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/build.make csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/build.make csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 48%] Building CXX object csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/test_nblist_3body.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/test_nblist_3body.cc.o -MF CMakeFiles/unit_test_nblist_3body.dir/test_nblist_3body.cc.o.d -o CMakeFiles/unit_test_nblist_3body.dir/test_nblist_3body.cc.o -c /<>/csg/src/tests/test_nblist_3body.cc /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 48%] Linking CXX executable unit_test_nblist_3body cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_nblist_3body.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_nblist_3body.dir/test_nblist_3body.cc.o -o unit_test_nblist_3body -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 48%] Built target unit_test_nblist_3body make -f csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/build.make csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/build.make csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 48%] Building CXX object csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/test_nblistgrid_3body.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/test_nblistgrid_3body.cc.o -MF CMakeFiles/unit_test_nblistgrid_3body.dir/test_nblistgrid_3body.cc.o.d -o CMakeFiles/unit_test_nblistgrid_3body.dir/test_nblistgrid_3body.cc.o -c /<>/csg/src/tests/test_nblistgrid_3body.cc [ 48%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/ecpaobasis.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/ecpaobasis.cc.o -MF CMakeFiles/votca_xtp.dir/ecpaobasis.cc.o.d -o CMakeFiles/votca_xtp.dir/ecpaobasis.cc.o -c /<>/xtp/src/libxtp/ecpaobasis.cc [ 48%] Linking CXX executable unit_test_nblistgrid_3body cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_nblistgrid_3body.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_nblistgrid_3body.dir/test_nblistgrid_3body.cc.o -o unit_test_nblistgrid_3body -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 48%] Built target unit_test_nblistgrid_3body [ 48%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/ecpbasisset.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/ecpbasisset.cc.o -MF CMakeFiles/votca_xtp.dir/ecpbasisset.cc.o.d -o CMakeFiles/votca_xtp.dir/ecpbasisset.cc.o -c /<>/xtp/src/libxtp/ecpbasisset.cc In file included from /<>/xtp/src/libxtp/ecpaobasis.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpointtable.h:30: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/src/libxtp/ecpaobasis.cc:25: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::PotentialIO; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/src/libxtp/ecpaobasis.cc:152:44: required from here 152 | CptTable table = w.openTable("Potentials", numofprimitives); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 48%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/eeinteractor.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/eeinteractor.cc.o -MF CMakeFiles/votca_xtp.dir/eeinteractor.cc.o.d -o CMakeFiles/votca_xtp.dir/eeinteractor.cc.o -c /<>/xtp/src/libxtp/eeinteractor.cc make -f csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/build.make csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/build.make csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 48%] Building CXX object csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/test_boundarycondition.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/test_boundarycondition.cc.o -MF CMakeFiles/unit_test_boundarycondition.dir/test_boundarycondition.cc.o.d -o CMakeFiles/unit_test_boundarycondition.dir/test_boundarycondition.cc.o -c /<>/csg/src/tests/test_boundarycondition.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/eeinteractor.h:25, from /<>/xtp/src/libxtp/eeinteractor.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 49%] Linking CXX executable unit_test_boundarycondition cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_boundarycondition.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_boundarycondition.dir/test_boundarycondition.cc.o -o unit_test_boundarycondition -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 49%] Built target unit_test_boundarycondition make -f csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/build.make csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/build.make csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 49%] Building CXX object csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/test_pdbreader.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/test_pdbreader.cc.o -MF CMakeFiles/unit_test_pdbreader.dir/test_pdbreader.cc.o.d -o CMakeFiles/unit_test_pdbreader.dir/test_pdbreader.cc.o -c /<>/csg/src/tests/test_pdbreader.cc [ 49%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/erdiabatization.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/erdiabatization.cc.o -MF CMakeFiles/votca_xtp.dir/erdiabatization.cc.o.d -o CMakeFiles/votca_xtp.dir/erdiabatization.cc.o -c /<>/xtp/src/libxtp/erdiabatization.cc [ 49%] Linking CXX executable unit_test_pdbreader cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_pdbreader.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_pdbreader.dir/test_pdbreader.cc.o -o unit_test_pdbreader -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 49%] Built target unit_test_pdbreader make -f csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/build.make csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/build.make csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 49%] Building CXX object csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/test_tabulatedpotential.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/test_tabulatedpotential.cc.o -MF CMakeFiles/unit_test_tabulatedpotential.dir/test_tabulatedpotential.cc.o.d -o CMakeFiles/unit_test_tabulatedpotential.dir/test_tabulatedpotential.cc.o -c /<>/csg/src/tests/test_tabulatedpotential.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/erdiabatization.h:26, from /<>/xtp/src/libxtp/erdiabatization.cc:19: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 49%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/esp2multipole.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/esp2multipole.cc.o -MF CMakeFiles/votca_xtp.dir/esp2multipole.cc.o.d -o CMakeFiles/votca_xtp.dir/esp2multipole.cc.o -c /<>/xtp/src/libxtp/esp2multipole.cc [ 49%] Linking CXX executable unit_test_tabulatedpotential cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_tabulatedpotential.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_tabulatedpotential.dir/test_tabulatedpotential.cc.o ../csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o ../csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o ../csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -o unit_test_tabulatedpotential -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 49%] Built target unit_test_tabulatedpotential [ 49%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/espfit.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/espfit.cc.o -MF CMakeFiles/votca_xtp.dir/espfit.cc.o.d -o CMakeFiles/votca_xtp.dir/espfit.cc.o -c /<>/xtp/src/libxtp/espfit.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/esp2multipole.h:34, from /<>/xtp/src/libxtp/esp2multipole.cc:25: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/espfit.h:25, from /<>/xtp/src/libxtp/espfit.cc:26: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 50%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/calculatorfactory.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/calculatorfactory.cc.o -MF CMakeFiles/votca_xtp.dir/factories/calculatorfactory.cc.o.d -o CMakeFiles/votca_xtp.dir/factories/calculatorfactory.cc.o -c /<>/xtp/src/libxtp/factories/calculatorfactory.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/src/libxtp/calculators/eanalyze.h:36, from /<>/xtp/src/libxtp/factories/calculatorfactory.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::PolarSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make -f csg/src/tests/CMakeFiles/unit_test_triplelist.dir/build.make csg/src/tests/CMakeFiles/unit_test_triplelist.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_triplelist.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_triplelist.dir/build.make csg/src/tests/CMakeFiles/unit_test_triplelist.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/filterfactory.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/filterfactory.cc.o -MF CMakeFiles/votca_xtp.dir/factories/filterfactory.cc.o.d -o CMakeFiles/votca_xtp.dir/factories/filterfactory.cc.o -c /<>/xtp/src/libxtp/factories/filterfactory.cc [ 51%] Building CXX object csg/src/tests/CMakeFiles/unit_test_triplelist.dir/test_triplelist.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/<>/csg/src/tests/DataFiles\" -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_triplelist.dir/test_triplelist.cc.o -MF CMakeFiles/unit_test_triplelist.dir/test_triplelist.cc.o.d -o CMakeFiles/unit_test_triplelist.dir/test_triplelist.cc.o -c /<>/csg/src/tests/test_triplelist.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statefilter_base.h:33, from /<>/xtp/include/votca/xtp/filterfactory.h:28, from /<>/xtp/src/libxtp/factories/filterfactory.cc:22: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 51%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/jobcalculatorfactory.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/jobcalculatorfactory.cc.o -MF CMakeFiles/votca_xtp.dir/factories/jobcalculatorfactory.cc.o.d -o CMakeFiles/votca_xtp.dir/factories/jobcalculatorfactory.cc.o -c /<>/xtp/src/libxtp/factories/jobcalculatorfactory.cc [ 51%] Linking CXX executable unit_test_triplelist cd /<>/obj-x86_64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_triplelist.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_triplelist.dir/test_triplelist.cc.o -o unit_test_triplelist -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target unit_test_triplelist make -f csg/share/template/CMakeFiles/template_serial.dir/build.make csg/share/template/CMakeFiles/template_serial.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/share/template /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/share/template /<>/obj-x86_64-linux-gnu/csg/share/template/CMakeFiles/template_serial.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/share/template/CMakeFiles/template_serial.dir/build.make csg/share/template/CMakeFiles/template_serial.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o cd /<>/obj-x86_64-linux-gnu/csg/share/template && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o -MF CMakeFiles/template_serial.dir/template_serial.cc.o.d -o CMakeFiles/template_serial.dir/template_serial.cc.o -c /<>/csg/share/template/template_serial.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/include/votca/xtp/jobcalculator.h:32, from /<>/xtp/include/votca/xtp/jobcalculatorfactory.h:31, from /<>/xtp/src/libxtp/factories/jobcalculatorfactory.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 51%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/qmpackagefactory.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/qmpackagefactory.cc.o -MF CMakeFiles/votca_xtp.dir/factories/qmpackagefactory.cc.o.d -o CMakeFiles/votca_xtp.dir/factories/qmpackagefactory.cc.o -c /<>/xtp/src/libxtp/factories/qmpackagefactory.cc [ 51%] Linking CXX executable template_serial cd /<>/obj-x86_64-linux-gnu/csg/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_serial.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/template_serial.dir/template_serial.cc.o -o template_serial -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../../src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target template_serial make -f csg/share/template/CMakeFiles/template_threaded.dir/build.make csg/share/template/CMakeFiles/template_threaded.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/share/template /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/share/template /<>/obj-x86_64-linux-gnu/csg/share/template/CMakeFiles/template_threaded.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/share/template/CMakeFiles/template_threaded.dir/build.make csg/share/template/CMakeFiles/template_threaded.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object csg/share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o cd /<>/obj-x86_64-linux-gnu/csg/share/template && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o -MF CMakeFiles/template_threaded.dir/template_threaded.cc.o.d -o CMakeFiles/template_threaded.dir/template_threaded.cc.o -c /<>/csg/share/template/template_threaded.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/qmpackage.h:31, from /<>/xtp/include/votca/xtp/qmpackagefactory.h:28, from /<>/xtp/src/libxtp/factories/qmpackagefactory.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 51%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/quadrature_factory.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/quadrature_factory.cc.o -MF CMakeFiles/votca_xtp.dir/factories/quadrature_factory.cc.o.d -o CMakeFiles/votca_xtp.dir/factories/quadrature_factory.cc.o -c /<>/xtp/src/libxtp/factories/quadrature_factory.cc [ 51%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/sigmafactory.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/sigmafactory.cc.o -MF CMakeFiles/votca_xtp.dir/factories/sigmafactory.cc.o.d -o CMakeFiles/votca_xtp.dir/factories/sigmafactory.cc.o -c /<>/xtp/src/libxtp/factories/sigmafactory.cc [ 51%] Linking CXX executable template_threaded cd /<>/obj-x86_64-linux-gnu/csg/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_threaded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/template_threaded.dir/template_threaded.cc.o -o template_threaded -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools ../../src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target template_threaded make -f csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building csg_reupdate manpage cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_reupdate --format groff --out csg_reupdate.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory 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'\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target csg_map_manpage make -f csg/src/tools/CMakeFiles/csg_dump_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_dump_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_dump_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dump_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_dump_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building csg_dump manpage cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dump --format groff --out csg_dump.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target csg_dump_manpage make -f csg/src/tools/CMakeFiles/csg_property_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_property_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_property_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_property_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_property_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building csg_property manpage cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_property --format groff --out csg_property.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target csg_property_manpage [ 51%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/toolfactory.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/factories/toolfactory.cc.o -MF CMakeFiles/votca_xtp.dir/factories/toolfactory.cc.o.d -o CMakeFiles/votca_xtp.dir/factories/toolfactory.cc.o -c /<>/xtp/src/libxtp/factories/toolfactory.cc make -f csg/src/tools/CMakeFiles/csg_resample_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_resample_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_resample_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_resample_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_resample_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building csg_resample manpage cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_resample --format groff --out csg_resample.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target csg_resample_manpage [ 51%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/fcddiabatization.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/fcddiabatization.cc.o -MF CMakeFiles/votca_xtp.dir/fcddiabatization.cc.o.d -o CMakeFiles/votca_xtp.dir/fcddiabatization.cc.o -c /<>/xtp/src/libxtp/fcddiabatization.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/couplingbase.h:29, from /<>/xtp/include/votca/xtp/dftcoupling.h:25, from /<>/xtp/src/libxtp/tools/coupling.h:25, from /<>/xtp/src/libxtp/factories/toolfactory.cc:25: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/fcddiabatization.h:25, from /<>/xtp/src/libxtp/fcddiabatization.cc:19: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 53%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_hermite_quadrature.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_hermite_quadrature.cc.o -MF CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_hermite_quadrature.cc.o.d -o CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_hermite_quadrature.cc.o -c /<>/xtp/src/libxtp/gaussian_quadrature/gauss_hermite_quadrature.cc [ 53%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_laguerre_quadrature.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_laguerre_quadrature.cc.o -MF CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_laguerre_quadrature.cc.o.d -o CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_laguerre_quadrature.cc.o -c /<>/xtp/src/libxtp/gaussian_quadrature/gauss_laguerre_quadrature.cc make -f csg/src/tools/CMakeFiles/csg_stat_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_stat_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_stat_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_stat_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_stat_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Building csg_stat manpage cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_stat --format groff --out csg_stat.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 54%] Built target csg_stat_manpage make -f csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Building csg_fmatch manpage cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_fmatch --format groff --out csg_fmatch.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 54%] Built target csg_fmatch_manpage [ 54%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_legendre_quadrature.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_legendre_quadrature.cc.o -MF CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_legendre_quadrature.cc.o.d -o CMakeFiles/votca_xtp.dir/gaussian_quadrature/gauss_legendre_quadrature.cc.o -c /<>/xtp/src/libxtp/gaussian_quadrature/gauss_legendre_quadrature.cc [ 54%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gaussianwriter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gaussianwriter.cc.o -MF CMakeFiles/votca_xtp.dir/gaussianwriter.cc.o.d -o CMakeFiles/votca_xtp.dir/gaussianwriter.cc.o -c /<>/xtp/src/libxtp/gaussianwriter.cc make -f csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Building csg_gmxtopol manpage cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_gmxtopol --format groff --out csg_gmxtopol.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 54%] Built target csg_gmxtopol_manpage [ 54%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gmhdiabatization.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gmhdiabatization.cc.o -MF CMakeFiles/votca_xtp.dir/gmhdiabatization.cc.o.d -o CMakeFiles/votca_xtp.dir/gmhdiabatization.cc.o -c /<>/xtp/src/libxtp/gmhdiabatization.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/gaussianwriter.h:26, from /<>/xtp/src/libxtp/gaussianwriter.cc:20: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/gmhdiabatization.h:25, from /<>/xtp/src/libxtp/gmhdiabatization.cc:19: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 54%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gnode.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gnode.cc.o -MF CMakeFiles/votca_xtp.dir/gnode.cc.o.d -o CMakeFiles/votca_xtp.dir/gnode.cc.o -c /<>/xtp/src/libxtp/gnode.cc [ 54%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/grid.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/grid.cc.o -MF CMakeFiles/votca_xtp.dir/grids/grid.cc.o.d -o CMakeFiles/votca_xtp.dir/grids/grid.cc.o -c /<>/xtp/src/libxtp/grids/grid.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/gnode.h:25, from /<>/xtp/src/libxtp/gnode.cc:22: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 54%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/gridbox.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/gridbox.cc.o -MF CMakeFiles/votca_xtp.dir/grids/gridbox.cc.o.d -o CMakeFiles/votca_xtp.dir/grids/gridbox.cc.o -c /<>/xtp/src/libxtp/grids/gridbox.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/qmmolecule.h:25, from /<>/xtp/include/votca/xtp/grid.h:31, from /<>/xtp/src/libxtp/grids/grid.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 55%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/radial_euler_maclaurin_rule.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/radial_euler_maclaurin_rule.cc.o -MF CMakeFiles/votca_xtp.dir/grids/radial_euler_maclaurin_rule.cc.o.d -o CMakeFiles/votca_xtp.dir/grids/radial_euler_maclaurin_rule.cc.o -c /<>/xtp/src/libxtp/grids/radial_euler_maclaurin_rule.cc make -f csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Building csg_dlptopol manpage cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dlptopol --format groff --out csg_dlptopol.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 55%] Built target csg_dlptopol_manpage make -f csg/src/tools/CMakeFiles/csg_density_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_density_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_density_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_density_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_density_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Building csg_density manpage cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_density --format groff --out csg_density.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 55%] Built target csg_density_manpage [ 55%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/regular_grid.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/regular_grid.cc.o -MF CMakeFiles/votca_xtp.dir/grids/regular_grid.cc.o.d -o CMakeFiles/votca_xtp.dir/grids/regular_grid.cc.o -c /<>/xtp/src/libxtp/grids/regular_grid.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/qmmolecule.h:25, from /<>/xtp/src/libxtp/grids/radial_euler_maclaurin_rule.cc:26: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 55%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/sphere_lebedev_rule.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/sphere_lebedev_rule.cc.o -MF CMakeFiles/votca_xtp.dir/grids/sphere_lebedev_rule.cc.o.d -o CMakeFiles/votca_xtp.dir/grids/sphere_lebedev_rule.cc.o -c /<>/xtp/src/libxtp/grids/sphere_lebedev_rule.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/qmmolecule.h:25, from /<>/xtp/src/libxtp/grids/regular_grid.cc:22: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/qmmolecule.h:25, from /<>/xtp/include/votca/xtp/sphere_lebedev_rule.h:32, from /<>/xtp/src/libxtp/grids/sphere_lebedev_rule.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ make -f csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Building csg_imc_solve manpage cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_imc_solve --format groff --out csg_imc_solve.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 55%] Built target csg_imc_solve_manpage [ 55%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/vxc_grid.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/grids/vxc_grid.cc.o -MF CMakeFiles/votca_xtp.dir/grids/vxc_grid.cc.o.d -o CMakeFiles/votca_xtp.dir/grids/vxc_grid.cc.o -c /<>/xtp/src/libxtp/grids/vxc_grid.cc /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/qmmolecule.h:25, from /<>/xtp/src/libxtp/grids/vxc_grid.cc:23: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 55%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/bse.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/bse.cc.o -MF CMakeFiles/votca_xtp.dir/gwbse/bse.cc.o.d -o CMakeFiles/votca_xtp.dir/gwbse/bse.cc.o -c /<>/xtp/src/libxtp/gwbse/bse.cc make -f csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Building CXX object csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o cd /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o -MF CMakeFiles/csg_boltzmann.dir/main.cc.o.d -o CMakeFiles/csg_boltzmann.dir/main.cc.o -c /<>/csg/src/csg_boltzmann/main.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/bse.h:26, from /<>/xtp/src/libxtp/gwbse/bse.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 57%] Linking CXX executable csg_boltzmann cd /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_boltzmann.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_boltzmann.dir/main.cc.o CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -o csg_boltzmann -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target csg_boltzmann [ 57%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/bse_operator.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/bse_operator.cc.o -MF CMakeFiles/votca_xtp.dir/gwbse/bse_operator.cc.o.d -o CMakeFiles/votca_xtp.dir/gwbse/bse_operator.cc.o -c /<>/xtp/src/libxtp/gwbse/bse_operator.cc make -f csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/build.make csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/build.make csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Building csg_fluctuations manpage cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name fluctuations/csg_fluctuations --format groff --out fluctuations.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target fluctuations_manpage make -f csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/build.make csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/build.make csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Building csg_orientcorr manpage cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name orientcorr/csg_orientcorr --format groff --out orientcorr.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target orientcorr_manpage [ 57%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/gw.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/gw.cc.o -MF CMakeFiles/votca_xtp.dir/gwbse/gw.cc.o.d -o CMakeFiles/votca_xtp.dir/gwbse/gw.cc.o -c /<>/xtp/src/libxtp/gwbse/gw.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/gw.h:26, from /<>/xtp/src/libxtp/gwbse/gw.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make -f csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/build.make csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/build.make csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Building csg_part_dist manpage cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name part_dist/csg_part_dist --format groff --out part_dist.man /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target part_dist_manpage [ 57%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/gwbse.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/gwbse.cc.o -MF CMakeFiles/votca_xtp.dir/gwbse/gwbse.cc.o.d -o CMakeFiles/votca_xtp.dir/gwbse/gwbse.cc.o -c /<>/xtp/src/libxtp/gwbse/gwbse.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/bse.h:26, from /<>/xtp/src/libxtp/gwbse/gwbse.cc:32: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 58%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/gwbseengine.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/gwbseengine.cc.o -MF CMakeFiles/votca_xtp.dir/gwbse/gwbseengine.cc.o.d -o CMakeFiles/votca_xtp.dir/gwbse/gwbseengine.cc.o -c /<>/xtp/src/libxtp/gwbse/gwbseengine.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/bse.h:26, from /<>/xtp/include/votca/xtp/gwbse.h:31, from /<>/xtp/src/libxtp/gwbse/gwbseengine.cc:25: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make -f csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/build.make csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/build.make csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 58%] Building csg_partial_rdf manpage cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name partial_rdf/csg_partial_rdf --format groff --out partial_rdf.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 58%] Built target partial_rdf_manpage make -f csg/src/csgapps/CMakeFiles/radii_manpage.dir/build.make csg/src/csgapps/CMakeFiles/radii_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/radii_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/radii_manpage.dir/build.make csg/src/csgapps/CMakeFiles/radii_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 59%] Building csg_radii manpage cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name radii/csg_radii --format groff --out radii.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 59%] Built target radii_manpage make -f csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/build.make csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/build.make csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 59%] Building csg_sphericalorder manpage cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name sphericalorder/csg_sphericalorder --format groff --out sphericalorder.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 59%] Built target sphericalorder_manpage [ 59%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/ppm.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/ppm.cc.o -MF CMakeFiles/votca_xtp.dir/gwbse/ppm.cc.o.d -o CMakeFiles/votca_xtp.dir/gwbse/ppm.cc.o -c /<>/xtp/src/libxtp/gwbse/ppm.cc [ 59%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/rpa.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/rpa.cc.o -MF CMakeFiles/votca_xtp.dir/gwbse/rpa.cc.o.d -o CMakeFiles/votca_xtp.dir/gwbse/rpa.cc.o -c /<>/xtp/src/libxtp/gwbse/rpa.cc [ 59%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/sigma_base.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gwbse/sigma_base.cc.o -MF CMakeFiles/votca_xtp.dir/gwbse/sigma_base.cc.o.d -o CMakeFiles/votca_xtp.dir/gwbse/sigma_base.cc.o -c /<>/xtp/src/libxtp/gwbse/sigma_base.cc [ 59%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gyration.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/gyration.cc.o -MF CMakeFiles/votca_xtp.dir/gyration.cc.o.d -o CMakeFiles/votca_xtp.dir/gyration.cc.o -c /<>/xtp/src/libxtp/gyration.cc make -f csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/build.make csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/build.make csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 59%] Building csg_traj_force manpage cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name traj_force/csg_traj_force --format groff --out traj_force.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 59%] Built target traj_force_manpage make -f csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 59%] Building csg_boltzmann manpage cd /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/csg_boltzmann --format groff --out csg_boltzmann.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 59%] Built target csg_boltzmann_manpage [ 59%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/job.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/job.cc.o -MF CMakeFiles/votca_xtp.dir/job.cc.o.d -o CMakeFiles/votca_xtp.dir/job.cc.o -c /<>/xtp/src/libxtp/job.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/gyration.h:30, from /<>/xtp/src/libxtp/gyration.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 59%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/jobcalculators/eqm.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/jobcalculators/eqm.cc.o -MF CMakeFiles/votca_xtp.dir/jobcalculators/eqm.cc.o.d -o CMakeFiles/votca_xtp.dir/jobcalculators/eqm.cc.o -c /<>/xtp/src/libxtp/jobcalculators/eqm.cc [ 59%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/jobcalculators/iexcitoncl.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/jobcalculators/iexcitoncl.cc.o -MF CMakeFiles/votca_xtp.dir/jobcalculators/iexcitoncl.cc.o.d -o CMakeFiles/votca_xtp.dir/jobcalculators/iexcitoncl.cc.o -c /<>/xtp/src/libxtp/jobcalculators/iexcitoncl.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/esp2multipole.h:34, from /<>/xtp/src/libxtp/jobcalculators/eqm.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/eeinteractor.h:25, from /<>/xtp/src/libxtp/jobcalculators/iexcitoncl.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 61%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/jobcalculators/iqm.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/jobcalculators/iqm.cc.o -MF CMakeFiles/votca_xtp.dir/jobcalculators/iqm.cc.o.d -o CMakeFiles/votca_xtp.dir/jobcalculators/iqm.cc.o -c /<>/xtp/src/libxtp/jobcalculators/iqm.cc [ 61%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/jobcalculators/qmmm.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/jobcalculators/qmmm.cc.o -MF CMakeFiles/votca_xtp.dir/jobcalculators/qmmm.cc.o.d -o CMakeFiles/votca_xtp.dir/jobcalculators/qmmm.cc.o -c /<>/xtp/src/libxtp/jobcalculators/qmmm.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/region.h:30, from /<>/xtp/include/votca/xtp/jobtopology.h:27, from /<>/xtp/src/libxtp/jobcalculators/qmmm.cc:34: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/qmpackage.h:31, from /<>/xtp/include/votca/xtp/qmpackagefactory.h:28, from /<>/xtp/src/libxtp/jobcalculators/iqm.cc:33: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 61%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/jobtopology.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/jobtopology.cc.o -MF CMakeFiles/votca_xtp.dir/jobtopology.cc.o.d -o CMakeFiles/votca_xtp.dir/jobtopology.cc.o -c /<>/xtp/src/libxtp/jobtopology.cc [ 61%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/kmccalculator.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/kmccalculator.cc.o -MF CMakeFiles/votca_xtp.dir/kmccalculator.cc.o.d -o CMakeFiles/votca_xtp.dir/kmccalculator.cc.o -c /<>/xtp/src/libxtp/kmccalculator.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/src/libxtp/jobtopology.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/jobtopology.cc:351:4: required from here 351 | a(jobtopology_version(), "version"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/gnode.h:25, from /<>/xtp/src/libxtp/kmccalculator.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ [ 61%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/libint2_calls.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/libint2_calls.cc.o -MF CMakeFiles/votca_xtp.dir/libint2_calls.cc.o.d -o CMakeFiles/votca_xtp.dir/libint2_calls.cc.o -c /<>/xtp/src/libxtp/libint2_calls.cc [ 61%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/matrixfreeoperator.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/matrixfreeoperator.cc.o -MF CMakeFiles/votca_xtp.dir/matrixfreeoperator.cc.o.d -o CMakeFiles/votca_xtp.dir/matrixfreeoperator.cc.o -c /<>/xtp/src/libxtp/matrixfreeoperator.cc [ 61%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/md2qmengine.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/md2qmengine.cc.o -MF CMakeFiles/votca_xtp.dir/md2qmengine.cc.o.d -o CMakeFiles/votca_xtp.dir/md2qmengine.cc.o -c /<>/xtp/src/libxtp/md2qmengine.cc In file included from /usr/include/libint2/engine.impl.h:34, from /usr/include/libint2/engine.h:1020, from /usr/include/libint2/cxxapi.h:45, from /usr/include/libint2.hpp:24, from /<>/xtp/src/libxtp/libint2_calls.cc:30: /usr/include/libint2/boys.h: In constructor ‘libint2::TennoGmEval::TennoGmEval(unsigned int, Real)’: /usr/include/libint2/boys.h:875: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers 875 | if (mmax > cheb_table_mmax) /usr/include/libint2/boys.h:875: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/include/votca/xtp/md2qmengine.h:27, from /<>/xtp/src/libxtp/md2qmengine.cc:19: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 61%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/mmregion.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/mmregion.cc.o -MF CMakeFiles/votca_xtp.dir/mmregion.cc.o.d -o CMakeFiles/votca_xtp.dir/mmregion.cc.o -c /<>/xtp/src/libxtp/mmregion.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/mmregion.h:25, from /<>/xtp/src/libxtp/mmregion.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::PolarSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/mmregion.cc:54:19: required from ‘void votca::xtp::MMRegion::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::ClassicalSegment]’ 54 | seg.WriteToCpt(www); | ~~~~~~~~~~~~~~^~~~~ /<>/xtp/src/libxtp/mmregion.cc:78:16: required from here 78 | template class MMRegion; | ^~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/mmregion.cc:54:19: required from ‘void votca::xtp::MMRegion::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::ClassicalSegment]’ 54 | seg.WriteToCpt(www); | ~~~~~~~~~~~~~~^~~~~ /<>/xtp/src/libxtp/mmregion.cc:78:16: required from here 78 | template class MMRegion; | ^~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 62%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/molden.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/molden.cc.o -MF CMakeFiles/votca_xtp.dir/molden.cc.o.d -o CMakeFiles/votca_xtp.dir/molden.cc.o -c /<>/xtp/src/libxtp/molden.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/molden.h:26, from /<>/xtp/src/libxtp/molden.cc:4: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 62%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/nbo.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/nbo.cc.o -MF CMakeFiles/votca_xtp.dir/nbo.cc.o.d -o CMakeFiles/votca_xtp.dir/nbo.cc.o -c /<>/xtp/src/libxtp/nbo.cc [ 62%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/numerical_integration/amplitude_integration.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/numerical_integration/amplitude_integration.cc.o -MF CMakeFiles/votca_xtp.dir/numerical_integration/amplitude_integration.cc.o.d -o CMakeFiles/votca_xtp.dir/numerical_integration/amplitude_integration.cc.o -c /<>/xtp/src/libxtp/numerical_integration/amplitude_integration.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/aopotential.h:26, from /<>/xtp/src/libxtp/numerical_integration/amplitude_integration.cc:22: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 62%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/numerical_integration/density_integration.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/numerical_integration/density_integration.cc.o -MF CMakeFiles/votca_xtp.dir/numerical_integration/density_integration.cc.o.d -o CMakeFiles/votca_xtp.dir/numerical_integration/density_integration.cc.o -c /<>/xtp/src/libxtp/numerical_integration/density_integration.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/aopotential.h:26, from /<>/xtp/src/libxtp/numerical_integration/density_integration.cc:22: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 62%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/numerical_integration/vxc_potential.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/numerical_integration/vxc_potential.cc.o -MF CMakeFiles/votca_xtp.dir/numerical_integration/vxc_potential.cc.o.d -o CMakeFiles/votca_xtp.dir/numerical_integration/vxc_potential.cc.o -c /<>/xtp/src/libxtp/numerical_integration/vxc_potential.cc [ 62%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/openmp_cuda.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/openmp_cuda.cc.o -MF CMakeFiles/votca_xtp.dir/openmp_cuda.cc.o.d -o CMakeFiles/votca_xtp.dir/openmp_cuda.cc.o -c /<>/xtp/src/libxtp/openmp_cuda.cc [ 62%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/orbitals.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/orbitals.cc.o -MF CMakeFiles/votca_xtp.dir/orbitals.cc.o.d -o CMakeFiles/votca_xtp.dir/orbitals.cc.o -c /<>/xtp/src/libxtp/orbitals.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/libxtp/orbitals.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/orbitals.cc:635:4: required from here 635 | w(orbitals_version(), "version"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/orbitals.cc:654:20: required from here 654 | atoms_.WriteToCpt(molgroup); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/orbitals.cc:656:4: required from here 656 | w(qm_energy_, "qm_energy"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 62%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/orbreorder.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/orbreorder.cc.o -MF CMakeFiles/votca_xtp.dir/orbreorder.cc.o.d -o CMakeFiles/votca_xtp.dir/orbreorder.cc.o -c /<>/xtp/src/libxtp/orbreorder.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/orbreorder.h:28, from /<>/xtp/src/libxtp/orbreorder.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 63%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/parallelxjobcalc.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/parallelxjobcalc.cc.o -MF CMakeFiles/votca_xtp.dir/parallelxjobcalc.cc.o.d -o CMakeFiles/votca_xtp.dir/parallelxjobcalc.cc.o -c /<>/xtp/src/libxtp/parallelxjobcalc.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/include/votca/xtp/jobcalculator.h:32, from /<>/xtp/include/votca/xtp/parallelxjobcalc.h:31, from /<>/xtp/src/libxtp/parallelxjobcalc.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 63%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/pmlocalization.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/pmlocalization.cc.o -MF CMakeFiles/votca_xtp.dir/pmlocalization.cc.o.d -o CMakeFiles/votca_xtp.dir/pmlocalization.cc.o -c /<>/xtp/src/libxtp/pmlocalization.cc [ 63%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/polarregion.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/polarregion.cc.o -MF CMakeFiles/votca_xtp.dir/polarregion.cc.o.d -o CMakeFiles/votca_xtp.dir/polarregion.cc.o -c /<>/xtp/src/libxtp/polarregion.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/eeinteractor.h:25, from /<>/xtp/include/votca/xtp/dipoledipoleinteraction.h:23, from /<>/xtp/src/libxtp/polarregion.cc:25: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/pmlocalization.h:25, from /<>/xtp/src/libxtp/pmlocalization.cc:23: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 63%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/polarsite.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/polarsite.cc.o -MF CMakeFiles/votca_xtp.dir/polarsite.cc.o.d -o CMakeFiles/votca_xtp.dir/polarsite.cc.o -c /<>/xtp/src/libxtp/polarsite.cc In file included from /<>/xtp/src/libxtp/polarsite.cc:31: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpointtable.h:30: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 63%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/populationanalysis.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/populationanalysis.cc.o -MF CMakeFiles/votca_xtp.dir/populationanalysis.cc.o.d -o CMakeFiles/votca_xtp.dir/populationanalysis.cc.o -c /<>/xtp/src/libxtp/populationanalysis.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/populationanalysis.h:26, from /<>/xtp/src/libxtp/populationanalysis.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 63%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/progressobserver.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/progressobserver.cc.o -MF CMakeFiles/votca_xtp.dir/progressobserver.cc.o.d -o CMakeFiles/votca_xtp.dir/progressobserver.cc.o -c /<>/xtp/src/libxtp/progressobserver.cc [ 63%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmatom.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmatom.cc.o -MF CMakeFiles/votca_xtp.dir/qmatom.cc.o.d -o CMakeFiles/votca_xtp.dir/qmatom.cc.o -c /<>/xtp/src/libxtp/qmatom.cc In file included from /<>/xtp/src/libxtp/qmatom.cc:22: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpointtable.h:30: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 63%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmcalculator.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmcalculator.cc.o -MF CMakeFiles/votca_xtp.dir/qmcalculator.cc.o.d -o CMakeFiles/votca_xtp.dir/qmcalculator.cc.o -c /<>/xtp/src/libxtp/qmcalculator.cc [ 64%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmmolecule.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmmolecule.cc.o -MF CMakeFiles/votca_xtp.dir/qmmolecule.cc.o.d -o CMakeFiles/votca_xtp.dir/qmmolecule.cc.o -c /<>/xtp/src/libxtp/qmmolecule.cc [ 64%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmnblist.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmnblist.cc.o -MF CMakeFiles/votca_xtp.dir/qmnblist.cc.o.d -o CMakeFiles/votca_xtp.dir/qmnblist.cc.o -c /<>/xtp/src/libxtp/qmnblist.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/src/libxtp/qmmolecule.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpointreader.h:27: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/src/libxtp/qmmolecule.cc:28: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/src/libxtp/qmnblist.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMPair; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/src/libxtp/qmnblist.cc:45:39: required from here 45 | CptTable table = w.openTable("pairs", size); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 64%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmpackage.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmpackage.cc.o -MF CMakeFiles/votca_xtp.dir/qmpackage.cc.o.d -o CMakeFiles/votca_xtp.dir/qmpackage.cc.o -c /<>/xtp/src/libxtp/qmpackage.cc [ 64%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmpackages/orca.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmpackages/orca.cc.o -MF CMakeFiles/votca_xtp.dir/qmpackages/orca.cc.o.d -o CMakeFiles/votca_xtp.dir/qmpackages/orca.cc.o -c /<>/xtp/src/libxtp/qmpackages/orca.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/src/libxtp/qmpackage.cc:26: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/src/libxtp/qmpackages/orca.cc:40: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 64%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmpackages/xtpdft.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmpackages/xtpdft.cc.o -MF CMakeFiles/votca_xtp.dir/qmpackages/xtpdft.cc.o.d -o CMakeFiles/votca_xtp.dir/qmpackages/xtpdft.cc.o -c /<>/xtp/src/libxtp/qmpackages/xtpdft.cc [ 64%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmpair.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmpair.cc.o -MF CMakeFiles/votca_xtp.dir/qmpair.cc.o.d -o CMakeFiles/votca_xtp.dir/qmpair.cc.o -c /<>/xtp/src/libxtp/qmpair.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/dftengine.h:30, from /<>/xtp/src/libxtp/qmpackages/xtpdft.h:28, from /<>/xtp/src/libxtp/qmpackages/xtpdft.cc:33: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/src/libxtp/qmpair.cc:23: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 64%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmregion.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmregion.cc.o -MF CMakeFiles/votca_xtp.dir/qmregion.cc.o.d -o CMakeFiles/votca_xtp.dir/qmregion.cc.o -c /<>/xtp/src/libxtp/qmregion.cc [ 64%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmstate.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmstate.cc.o -MF CMakeFiles/votca_xtp.dir/qmstate.cc.o.d -o CMakeFiles/votca_xtp.dir/qmstate.cc.o -c /<>/xtp/src/libxtp/qmstate.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/hist.h:25, from /<>/xtp/include/votca/xtp/qmregion.h:25, from /<>/xtp/src/libxtp/qmregion.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 66%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmtool.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/qmtool.cc.o -MF CMakeFiles/votca_xtp.dir/qmtool.cc.o.d -o CMakeFiles/votca_xtp.dir/qmtool.cc.o -c /<>/xtp/src/libxtp/qmtool.cc [ 66%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/rate_engine.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/rate_engine.cc.o -MF CMakeFiles/votca_xtp.dir/rate_engine.cc.o.d -o CMakeFiles/votca_xtp.dir/rate_engine.cc.o -c /<>/xtp/src/libxtp/rate_engine.cc [ 66%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/region.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/region.cc.o -MF CMakeFiles/votca_xtp.dir/region.cc.o.d -o CMakeFiles/votca_xtp.dir/region.cc.o -c /<>/xtp/src/libxtp/region.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/rate_engine.h:26, from /<>/xtp/src/libxtp/rate_engine.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 66%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/segment.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/segment.cc.o -MF CMakeFiles/votca_xtp.dir/segment.cc.o.d -o CMakeFiles/votca_xtp.dir/segment.cc.o -c /<>/xtp/src/libxtp/segment.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/eeinteractor.h:25, from /<>/xtp/include/votca/xtp/polarregion.h:25, from /<>/xtp/src/libxtp/region.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/src/libxtp/segment.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/segment.cc:43:34: required from here 43 | AtomContainer::WriteToCpt(w); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/segment.cc:46:4: required from here 46 | w(U_xX_nN_.getValue(QMStateType::Electron), "U_xX_nN_e"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/segment.cc:43:34: required from here 43 | AtomContainer::WriteToCpt(w); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 66%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/segmentmapper.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/segmentmapper.cc.o -MF CMakeFiles/votca_xtp.dir/segmentmapper.cc.o.d -o CMakeFiles/votca_xtp.dir/segmentmapper.cc.o -c /<>/xtp/src/libxtp/segmentmapper.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/segmentmapper.h:30, from /<>/xtp/src/libxtp/segmentmapper.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 66%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_cda.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_cda.cc.o -MF CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_cda.cc.o.d -o CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_cda.cc.o -c /<>/xtp/src/libxtp/self_energy_evaluators/sigma_cda.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::PolarSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/gw.h:26, from /<>/xtp/src/libxtp/self_energy_evaluators/sigma_cda.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 66%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_exact.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_exact.cc.o -MF CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_exact.cc.o.d -o CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_exact.cc.o -c /<>/xtp/src/libxtp/self_energy_evaluators/sigma_exact.cc [ 66%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_ppm.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_ppm.cc.o -MF CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_ppm.cc.o.d -o CMakeFiles/votca_xtp.dir/self_energy_evaluators/sigma_ppm.cc.o -c /<>/xtp/src/libxtp/self_energy_evaluators/sigma_ppm.cc [ 67%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/stateapplication.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/stateapplication.cc.o -MF CMakeFiles/votca_xtp.dir/stateapplication.cc.o.d -o CMakeFiles/votca_xtp.dir/stateapplication.cc.o -c /<>/xtp/src/libxtp/stateapplication.cc [ 67%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilter_base.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilter_base.cc.o -MF CMakeFiles/votca_xtp.dir/statefilter_base.cc.o.d -o CMakeFiles/votca_xtp.dir/statefilter_base.cc.o -c /<>/xtp/src/libxtp/statefilter_base.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/include/votca/xtp/stateapplication.h:26, from /<>/xtp/src/libxtp/stateapplication.cc:25: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statefilter_base.h:33, from /<>/xtp/src/libxtp/statefilter_base.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 67%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilters/DeltaQ_filter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilters/DeltaQ_filter.cc.o -MF CMakeFiles/votca_xtp.dir/statefilters/DeltaQ_filter.cc.o.d -o CMakeFiles/votca_xtp.dir/statefilters/DeltaQ_filter.cc.o -c /<>/xtp/src/libxtp/statefilters/DeltaQ_filter.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 67%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilters/Density_filter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilters/Density_filter.cc.o -MF CMakeFiles/votca_xtp.dir/statefilters/Density_filter.cc.o.d -o CMakeFiles/votca_xtp.dir/statefilters/Density_filter.cc.o -c /<>/xtp/src/libxtp/statefilters/Density_filter.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/populationanalysis.h:26, from /<>/xtp/src/libxtp/statefilters/DeltaQ_filter.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statefilter_base.h:33, from /<>/xtp/src/libxtp/statefilters/Density_filter.h:25, from /<>/xtp/src/libxtp/statefilters/Density_filter.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/statefilters/Density_filter.cc:68:4: required from here 68 | w(threshold_, "threshold"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 67%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilters/Localisation_filter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilters/Localisation_filter.cc.o -MF CMakeFiles/votca_xtp.dir/statefilters/Localisation_filter.cc.o.d -o CMakeFiles/votca_xtp.dir/statefilters/Localisation_filter.cc.o -c /<>/xtp/src/libxtp/statefilters/Localisation_filter.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 67%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilters/OscillatorStrength_filter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilters/OscillatorStrength_filter.cc.o -MF CMakeFiles/votca_xtp.dir/statefilters/OscillatorStrength_filter.cc.o.d -o CMakeFiles/votca_xtp.dir/statefilters/OscillatorStrength_filter.cc.o -c /<>/xtp/src/libxtp/statefilters/OscillatorStrength_filter.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/populationanalysis.h:26, from /<>/xtp/src/libxtp/statefilters/Localisation_filter.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statefilter_base.h:33, from /<>/xtp/src/libxtp/statefilters/OscillatorStrength_filter.h:25, from /<>/xtp/src/libxtp/statefilters/OscillatorStrength_filter.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/statefilters/OscillatorStrength_filter.cc:56:4: required from here 56 | w(threshold_, "threshold"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 67%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilters/Overlap_filter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statefilters/Overlap_filter.cc.o -MF CMakeFiles/votca_xtp.dir/statefilters/Overlap_filter.cc.o.d -o CMakeFiles/votca_xtp.dir/statefilters/Overlap_filter.cc.o -c /<>/xtp/src/libxtp/statefilters/Overlap_filter.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 68%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statesaver.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statesaver.cc.o -MF CMakeFiles/votca_xtp.dir/statesaver.cc.o.d -o CMakeFiles/votca_xtp.dir/statesaver.cc.o -c /<>/xtp/src/libxtp/statesaver.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statefilter_base.h:33, from /<>/xtp/src/libxtp/statefilters/Overlap_filter.h:25, from /<>/xtp/src/libxtp/statefilters/Overlap_filter.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/include/votca/xtp/statesaver.h:29, from /<>/xtp/src/libxtp/statesaver.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/statefilters/Overlap_filter.cc:174:4: required from here 174 | w(threshold_, "threshold"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 68%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statetracker.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/statetracker.cc.o -MF CMakeFiles/votca_xtp.dir/statetracker.cc.o.d -o CMakeFiles/votca_xtp.dir/statetracker.cc.o -c /<>/xtp/src/libxtp/statetracker.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statetracker.h:29, from /<>/xtp/src/libxtp/statetracker.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 68%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/staticsite.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/staticsite.cc.o -MF CMakeFiles/votca_xtp.dir/staticsite.cc.o.d -o CMakeFiles/votca_xtp.dir/staticsite.cc.o -c /<>/xtp/src/libxtp/staticsite.cc [ 68%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/symmetric_matrix.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/symmetric_matrix.cc.o -MF CMakeFiles/votca_xtp.dir/symmetric_matrix.cc.o.d -o CMakeFiles/votca_xtp.dir/symmetric_matrix.cc.o -c /<>/xtp/src/libxtp/symmetric_matrix.cc In file included from /<>/xtp/src/libxtp/staticsite.cc:31: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpointtable.h:30: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 68%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/threecenter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/threecenter.cc.o -MF CMakeFiles/votca_xtp.dir/threecenter.cc.o.d -o CMakeFiles/votca_xtp.dir/threecenter.cc.o -c /<>/xtp/src/libxtp/threecenter.cc [ 68%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/apdft.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/apdft.cc.o -MF CMakeFiles/votca_xtp.dir/tools/apdft.cc.o.d -o CMakeFiles/votca_xtp.dir/tools/apdft.cc.o -c /<>/xtp/src/libxtp/tools/apdft.cc [ 68%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/dftgwbse.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/dftgwbse.cc.o -MF CMakeFiles/votca_xtp.dir/tools/dftgwbse.cc.o.d -o CMakeFiles/votca_xtp.dir/tools/dftgwbse.cc.o -c /<>/xtp/src/libxtp/tools/dftgwbse.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/libxtp/tools/apdft.cc:23: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/qmpackage.h:31, from /<>/xtp/include/votca/xtp/qmpackagefactory.h:28, from /<>/xtp/src/libxtp/tools/dftgwbse.cc:23: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 68%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/diabatization.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/diabatization.cc.o -MF CMakeFiles/votca_xtp.dir/tools/diabatization.cc.o.d -o CMakeFiles/votca_xtp.dir/tools/diabatization.cc.o -c /<>/xtp/src/libxtp/tools/diabatization.cc [ 70%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/gencube.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/gencube.cc.o -MF CMakeFiles/votca_xtp.dir/tools/gencube.cc.o.d -o CMakeFiles/votca_xtp.dir/tools/gencube.cc.o -c /<>/xtp/src/libxtp/tools/gencube.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/libxtp/tools/diabatization.h:29, from /<>/xtp/src/libxtp/tools/diabatization.cc:18: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/cubefile_writer.h:26, from /<>/xtp/src/libxtp/tools/gencube.cc:33: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 70%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/gpu_benchmark.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/gpu_benchmark.cc.o -MF CMakeFiles/votca_xtp.dir/tools/gpu_benchmark.cc.o.d -o CMakeFiles/votca_xtp.dir/tools/gpu_benchmark.cc.o -c /<>/xtp/src/libxtp/tools/gpu_benchmark.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/libxtp/tools/gpu_benchmark.cc:30: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 70%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/mol2orb.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/mol2orb.cc.o -MF CMakeFiles/votca_xtp.dir/tools/mol2orb.cc.o.d -o CMakeFiles/votca_xtp.dir/tools/mol2orb.cc.o -c /<>/xtp/src/libxtp/tools/mol2orb.cc /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/molden.h:26, from /<>/xtp/src/libxtp/tools/mol2orb.cc:7: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 70%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/molpol.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/molpol.cc.o -MF CMakeFiles/votca_xtp.dir/tools/molpol.cc.o.d -o CMakeFiles/votca_xtp.dir/tools/molpol.cc.o -c /<>/xtp/src/libxtp/tools/molpol.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 70%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/orb2fchk.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/orb2fchk.cc.o -MF CMakeFiles/votca_xtp.dir/tools/orb2fchk.cc.o.d -o CMakeFiles/votca_xtp.dir/tools/orb2fchk.cc.o -c /<>/xtp/src/libxtp/tools/orb2fchk.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/eeinteractor.h:25, from /<>/xtp/include/votca/xtp/polarregion.h:25, from /<>/xtp/src/libxtp/tools/molpol.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/gaussianwriter.h:26, from /<>/xtp/src/libxtp/tools/orb2fchk.cc:26: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::PolarSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 70%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/orb2mol.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/orb2mol.cc.o -MF CMakeFiles/votca_xtp.dir/tools/orb2mol.cc.o.d -o CMakeFiles/votca_xtp.dir/tools/orb2mol.cc.o -c /<>/xtp/src/libxtp/tools/orb2mol.cc [ 70%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/spectrum.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/spectrum.cc.o -MF CMakeFiles/votca_xtp.dir/tools/spectrum.cc.o.d -o CMakeFiles/votca_xtp.dir/tools/spectrum.cc.o -c /<>/xtp/src/libxtp/tools/spectrum.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/orbreorder.h:28, from /<>/xtp/src/libxtp/tools/orb2mol.h:28, from /<>/xtp/src/libxtp/tools/orb2mol.cc:1: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 70%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/topology.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/topology.cc.o -MF CMakeFiles/votca_xtp.dir/topology.cc.o.d -o CMakeFiles/votca_xtp.dir/topology.cc.o -c /<>/xtp/src/libxtp/topology.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/libxtp/tools/spectrum.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointwriter.h:36, from /<>/xtp/src/libxtp/topology.cc:30: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpointwriter.h:29: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/topology.cc:185:4: required from here 185 | w(topology_version(), "version"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/src/libxtp/topology.cc:186:4: required from here 186 | w(time_, "time"); | ~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ [ 71%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/transition_densities.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/transition_densities.cc.o -MF CMakeFiles/votca_xtp.dir/transition_densities.cc.o.d -o CMakeFiles/votca_xtp.dir/transition_densities.cc.o -c /<>/xtp/src/libxtp/transition_densities.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/transition_densities.h:29, from /<>/xtp/src/libxtp/transition_densities.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 71%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/trustregion.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/trustregion.cc.o -MF CMakeFiles/votca_xtp.dir/trustregion.cc.o.d -o CMakeFiles/votca_xtp.dir/trustregion.cc.o -c /<>/xtp/src/libxtp/trustregion.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 71%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/version.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/version.cc.o -MF CMakeFiles/votca_xtp.dir/version.cc.o.d -o CMakeFiles/votca_xtp.dir/version.cc.o -c /<>/xtp/src/libxtp/version.cc [ 71%] Building CXX object xtp/src/libxtp/CMakeFiles/votca_xtp.dir/xtpapplication.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DUSING_Libxc -Dvotca_xtp_EXPORTS -I/<>/xtp/src/libxtp -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fPIC -fopenmp -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/xtpapplication.cc.o -MF CMakeFiles/votca_xtp.dir/xtpapplication.cc.o.d -o CMakeFiles/votca_xtp.dir/xtpapplication.cc.o -c /<>/xtp/src/libxtp/xtpapplication.cc [ 71%] Linking CXX shared library libvotca_xtp.so cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/cmake -E cmake_link_script CMakeFiles/votca_xtp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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CMakeFiles/votca_xtp.dir/xtpapplication.cc.o -Wl,-rpath,/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial: ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libxc.a /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a -lm /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so cd /<>/obj-x86_64-linux-gnu/xtp/src/libxtp && /usr/bin/cmake -E cmake_symlink_library libvotca_xtp.so.2024 libvotca_xtp.so.2024 libvotca_xtp.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 71%] Built target votca_xtp make -f xtp/src/tools/CMakeFiles/xtp_parallel.dir/build.make xtp/src/tools/CMakeFiles/xtp_parallel.dir/depend make -f xtp/src/tools/CMakeFiles/xtp_map.dir/build.make xtp/src/tools/CMakeFiles/xtp_map.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_map.dir/DependInfo.cmake "--color=" cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_parallel.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_parallel.dir/build.make xtp/src/tools/CMakeFiles/xtp_parallel.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_map.dir/build.make xtp/src/tools/CMakeFiles/xtp_map.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 71%] Building CXX object xtp/src/tools/CMakeFiles/xtp_map.dir/xtp_map.cc.o [ 71%] Building CXX object xtp/src/tools/CMakeFiles/xtp_parallel.dir/xtp_parallel.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tools/CMakeFiles/xtp_map.dir/xtp_map.cc.o -MF CMakeFiles/xtp_map.dir/xtp_map.cc.o.d -o CMakeFiles/xtp_map.dir/xtp_map.cc.o -c /<>/xtp/src/tools/xtp_map.cc cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tools/CMakeFiles/xtp_parallel.dir/xtp_parallel.cc.o -MF CMakeFiles/xtp_parallel.dir/xtp_parallel.cc.o.d -o CMakeFiles/xtp_parallel.dir/xtp_parallel.cc.o -c /<>/xtp/src/tools/xtp_parallel.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/include/votca/xtp/jobcalculator.h:32, from /<>/xtp/src/tools/xtp_parallel.cc:21: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/include/votca/xtp/md2qmengine.h:27, from /<>/xtp/src/tools/xtp_map.cc:34: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 71%] Linking CXX executable xtp_parallel cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/xtp_parallel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/xtp_parallel.dir/xtp_parallel.cc.o -o xtp_parallel -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial: ../libxtp/libvotca_xtp.so.2024 ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 71%] Built target xtp_parallel make -f xtp/src/tools/CMakeFiles/xtp_run.dir/build.make xtp/src/tools/CMakeFiles/xtp_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_run.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_run.dir/build.make xtp/src/tools/CMakeFiles/xtp_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object xtp/src/tools/CMakeFiles/xtp_run.dir/xtp_run.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tools/CMakeFiles/xtp_run.dir/xtp_run.cc.o -MF CMakeFiles/xtp_run.dir/xtp_run.cc.o.d -o CMakeFiles/xtp_run.dir/xtp_run.cc.o -c /<>/xtp/src/tools/xtp_run.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/include/votca/xtp/topology.h:31, from /<>/xtp/include/votca/xtp/stateapplication.h:26, from /<>/xtp/src/tools/xtp_run.cc:23: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 72%] Linking CXX executable xtp_map cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/xtp_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/xtp_map.dir/xtp_map.cc.o -o xtp_map -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial: ../libxtp/libvotca_xtp.so.2024 ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 [ 72%] Linking CXX executable xtp_run cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/xtp_run.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/xtp_run.dir/xtp_run.cc.o -o xtp_run -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial: ../libxtp/libvotca_xtp.so.2024 ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target xtp_map make -f xtp/src/tools/CMakeFiles/xtp_tools.dir/build.make xtp/src/tools/CMakeFiles/xtp_tools.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_tools.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_tools.dir/build.make xtp/src/tools/CMakeFiles/xtp_tools.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target xtp_run [ 72%] Building CXX object xtp/src/tools/CMakeFiles/xtp_tools.dir/xtp_tools.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tools/CMakeFiles/xtp_tools.dir/xtp_tools.cc.o -MF CMakeFiles/xtp_tools.dir/xtp_tools.cc.o.d -o CMakeFiles/xtp_tools.dir/xtp_tools.cc.o -c /<>/xtp/src/tools/xtp_tools.cc make -f xtp/src/tests/CMakeFiles/unit_test_adiis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_adiis.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_adiis.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_adiis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_adiis.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object 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/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target xtp_tools make -f xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/build.make 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-Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/test_aobasis.cc.o -MF CMakeFiles/unit_test_aobasis.dir/test_aobasis.cc.o.d -o CMakeFiles/unit_test_aobasis.dir/test_aobasis.cc.o -c /<>/xtp/src/tests/test_aobasis.cc [ 72%] Linking CXX executable unit_test_adiis cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_adiis.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_adiis.dir/test_adiis.cc.o -o unit_test_adiis -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target unit_test_adiis make -f xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/test_aomatrix.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/test_aomatrix.cc.o -MF CMakeFiles/unit_test_aomatrix.dir/test_aomatrix.cc.o.d -o CMakeFiles/unit_test_aomatrix.dir/test_aomatrix.cc.o -c /<>/xtp/src/tests/test_aomatrix.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_aobasis.cc:32: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_aomatrix.cc:26: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 72%] Linking CXX executable unit_test_aobasis cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_aobasis.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_aobasis.dir/test_aobasis.cc.o -o unit_test_aobasis -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target unit_test_aobasis make -f xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/test_aomatrix3d.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/test_aomatrix3d.cc.o -MF CMakeFiles/unit_test_aomatrix3d.dir/test_aomatrix3d.cc.o.d -o CMakeFiles/unit_test_aomatrix3d.dir/test_aomatrix3d.cc.o -c /<>/xtp/src/tests/test_aomatrix3d.cc [ 72%] Linking CXX executable unit_test_aomatrix cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_aomatrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_aomatrix.dir/test_aomatrix.cc.o -o unit_test_aomatrix -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target unit_test_aomatrix make -f xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/test_aotransform.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/test_aotransform.cc.o -MF CMakeFiles/unit_test_aotransform.dir/test_aotransform.cc.o.d -o CMakeFiles/unit_test_aotransform.dir/test_aotransform.cc.o -c /<>/xtp/src/tests/test_aotransform.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_aomatrix3d.cc:26: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_aotransform.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 72%] Linking CXX executable unit_test_aomatrix3d cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_aomatrix3d.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_aomatrix3d.dir/test_aomatrix3d.cc.o -o unit_test_aomatrix3d -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target unit_test_aomatrix3d make -f xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/test_aopotential.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/test_aopotential.cc.o -MF CMakeFiles/unit_test_aopotential.dir/test_aopotential.cc.o.d -o CMakeFiles/unit_test_aopotential.dir/test_aopotential.cc.o -c /<>/xtp/src/tests/test_aopotential.cc [ 74%] Linking CXX executable unit_test_aotransform cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_aotransform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_aotransform.dir/test_aotransform.cc.o -o unit_test_aotransform -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target unit_test_aotransform make -f xtp/src/tests/CMakeFiles/unit_test_atom.dir/build.make xtp/src/tests/CMakeFiles/unit_test_atom.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_atom.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_atom.dir/build.make xtp/src/tests/CMakeFiles/unit_test_atom.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_atom.dir/test_atom.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_atom.dir/test_atom.cc.o -MF CMakeFiles/unit_test_atom.dir/test_atom.cc.o.d -o CMakeFiles/unit_test_atom.dir/test_atom.cc.o -c /<>/xtp/src/tests/test_atom.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/aopotential.h:26, from /<>/xtp/src/tests/test_aopotential.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 75%] Linking CXX executable unit_test_atom cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_atom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_atom.dir/test_atom.cc.o -o unit_test_atom -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target unit_test_atom make -f xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 75%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/test_qmatom.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/test_qmatom.cc.o -MF CMakeFiles/unit_test_qmatom.dir/test_qmatom.cc.o.d -o CMakeFiles/unit_test_qmatom.dir/test_qmatom.cc.o -c /<>/xtp/src/tests/test_qmatom.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 76%] Linking CXX executable unit_test_qmatom cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_qmatom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_qmatom.dir/test_qmatom.cc.o -o unit_test_qmatom -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target unit_test_qmatom make -f xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 76%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/test_polarsegment.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/test_polarsegment.cc.o -MF CMakeFiles/unit_test_polarsegment.dir/test_polarsegment.cc.o.d -o CMakeFiles/unit_test_polarsegment.dir/test_polarsegment.cc.o -c /<>/xtp/src/tests/test_polarsegment.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/src/tests/test_polarsegment.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 76%] Linking CXX executable unit_test_aopotential cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_aopotential.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_aopotential.dir/test_aopotential.cc.o -o unit_test_aopotential -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::PolarSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/tests/test_polarsegment.cc:161:17: required from here 161 | seg.WriteToCpt(ww); | ~~~~~~~~~~~~~~^~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target unit_test_aopotential make -f xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/DependInfo.cmake "--color=" /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/tests/test_polarsegment.cc:161:17: required from here 161 | seg.WriteToCpt(ww); | ~~~~~~~~~~~~~~^~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 76%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/test_qmmolecule.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/test_qmmolecule.cc.o -MF CMakeFiles/unit_test_qmmolecule.dir/test_qmmolecule.cc.o.d -o CMakeFiles/unit_test_qmmolecule.dir/test_qmmolecule.cc.o -c /<>/xtp/src/tests/test_qmmolecule.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/qmmolecule.h:25, from /<>/xtp/src/tests/test_qmmolecule.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/tests/test_qmmolecule.cc:90:17: required from here 90 | seg.WriteToCpt(ww); | ~~~~~~~~~~~~~~^~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/tests/test_qmmolecule.cc:90:17: required from here 90 | seg.WriteToCpt(ww); | ~~~~~~~~~~~~~~^~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 76%] Linking CXX executable unit_test_polarsegment cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_polarsegment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_polarsegment.dir/test_polarsegment.cc.o -o unit_test_polarsegment -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target unit_test_polarsegment make -f xtp/src/tests/CMakeFiles/unit_test_basisset.dir/build.make xtp/src/tests/CMakeFiles/unit_test_basisset.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_basisset.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_basisset.dir/build.make xtp/src/tests/CMakeFiles/unit_test_basisset.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 76%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_basisset.dir/test_basisset.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_basisset.dir/test_basisset.cc.o -MF CMakeFiles/unit_test_basisset.dir/test_basisset.cc.o.d -o CMakeFiles/unit_test_basisset.dir/test_basisset.cc.o -c /<>/xtp/src/tests/test_basisset.cc [ 76%] Linking CXX executable unit_test_qmmolecule cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_qmmolecule.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_qmmolecule.dir/test_qmmolecule.cc.o -o unit_test_qmmolecule -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target unit_test_qmmolecule make -f xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 76%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/test_bseoperator_btda.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/test_bseoperator_btda.cc.o -MF CMakeFiles/unit_test_bseoperator_btda.dir/test_bseoperator_btda.cc.o.d -o CMakeFiles/unit_test_bseoperator_btda.dir/test_bseoperator_btda.cc.o -c /<>/xtp/src/tests/test_bseoperator_btda.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_basisset.cc:31: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 76%] Linking CXX executable unit_test_basisset cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_basisset.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_basisset.dir/test_basisset.cc.o -o unit_test_basisset -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target unit_test_basisset make -f xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 76%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/test_bfgs_trm.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/test_bfgs_trm.cc.o -MF CMakeFiles/unit_test_bfgs_trm.dir/test_bfgs_trm.cc.o.d -o CMakeFiles/unit_test_bfgs_trm.dir/test_bfgs_trm.cc.o -c /<>/xtp/src/tests/test_bfgs_trm.cc [ 77%] Linking CXX executable unit_test_bseoperator_btda cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_bseoperator_btda.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_bseoperator_btda.dir/test_bseoperator_btda.cc.o -o unit_test_bseoperator_btda -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target unit_test_bseoperator_btda make -f xtp/src/tests/CMakeFiles/unit_test_bse.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bse.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bse.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bse.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 77%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_bse.dir/test_bse.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_bse.dir/test_bse.cc.o -MF CMakeFiles/unit_test_bse.dir/test_bse.cc.o.d -o CMakeFiles/unit_test_bse.dir/test_bse.cc.o -c /<>/xtp/src/tests/test_bse.cc [ 77%] Linking CXX executable unit_test_bfgs_trm cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_bfgs_trm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_bfgs_trm.dir/test_bfgs_trm.cc.o -o unit_test_bfgs_trm -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/bse.h:26, from /<>/xtp/src/tests/test_bse.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target unit_test_bfgs_trm make -f xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/build.make xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/DependInfo.cmake "--color=" In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/build.make xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/build /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 77%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/test_convergenceacc.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/test_convergenceacc.cc.o -MF CMakeFiles/unit_test_convergenceacc.dir/test_convergenceacc.cc.o.d -o CMakeFiles/unit_test_convergenceacc.dir/test_convergenceacc.cc.o -c /<>/xtp/src/tests/test_convergenceacc.cc /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/aopotential.h:26, from /<>/xtp/src/tests/test_convergenceacc.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 77%] Linking CXX executable unit_test_bse cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_bse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_bse.dir/test_bse.cc.o -o unit_test_bse -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target unit_test_bse make -f xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 77%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/test_dftcoupling.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/test_dftcoupling.cc.o -MF CMakeFiles/unit_test_dftcoupling.dir/test_dftcoupling.cc.o.d -o CMakeFiles/unit_test_dftcoupling.dir/test_dftcoupling.cc.o -c /<>/xtp/src/tests/test_dftcoupling.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/couplingbase.h:29, from /<>/xtp/include/votca/xtp/dftcoupling.h:25, from /<>/xtp/src/tests/test_dftcoupling.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 77%] Linking CXX executable unit_test_convergenceacc cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_convergenceacc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_convergenceacc.dir/test_convergenceacc.cc.o -o unit_test_convergenceacc -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target unit_test_convergenceacc make -f xtp/src/tests/CMakeFiles/unit_test_diis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_diis.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_diis.dir/DependInfo.cmake "--color=" /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_diis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_diis.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 77%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_diis.dir/test_diis.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_diis.dir/test_diis.cc.o -MF CMakeFiles/unit_test_diis.dir/test_diis.cc.o.d -o CMakeFiles/unit_test_diis.dir/test_diis.cc.o -c /<>/xtp/src/tests/test_diis.cc [ 79%] Linking CXX executable unit_test_diis cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_diis.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_diis.dir/test_diis.cc.o -o unit_test_diis -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so [ 79%] Linking CXX executable unit_test_dftcoupling cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_dftcoupling.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_dftcoupling.dir/test_dftcoupling.cc.o -o unit_test_dftcoupling -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target unit_test_diis make -f xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/test_ecpaobasis.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/test_ecpaobasis.cc.o -MF CMakeFiles/unit_test_ecpaobasis.dir/test_ecpaobasis.cc.o.d -o CMakeFiles/unit_test_ecpaobasis.dir/test_ecpaobasis.cc.o -c /<>/xtp/src/tests/test_ecpaobasis.cc make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target unit_test_dftcoupling make -f xtp/src/tests/CMakeFiles/unit_test_eigen.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eigen.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_eigen.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_eigen.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eigen.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_eigen.dir/test_eigen.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_eigen.dir/test_eigen.cc.o -MF CMakeFiles/unit_test_eigen.dir/test_eigen.cc.o.d -o CMakeFiles/unit_test_eigen.dir/test_eigen.cc.o -c /<>/xtp/src/tests/test_eigen.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/qmmolecule.h:25, from /<>/xtp/src/tests/test_ecpaobasis.cc:17: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 79%] Linking CXX executable unit_test_ecpaobasis cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_ecpaobasis.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_ecpaobasis.dir/test_ecpaobasis.cc.o -o unit_test_ecpaobasis -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target unit_test_ecpaobasis make -f xtp/src/tests/CMakeFiles/unit_test_eris.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eris.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_eris.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_eris.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eris.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_eris.dir/test_eris.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_eris.dir/test_eris.cc.o -MF CMakeFiles/unit_test_eris.dir/test_eris.cc.o.d -o CMakeFiles/unit_test_eris.dir/test_eris.cc.o -c /<>/xtp/src/tests/test_eris.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_eris.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 79%] Linking CXX executable unit_test_eigen cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_eigen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_eigen.dir/test_eigen.cc.o -o unit_test_eigen -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target unit_test_eigen make -f xtp/src/tests/CMakeFiles/unit_test_espfit.dir/build.make xtp/src/tests/CMakeFiles/unit_test_espfit.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_espfit.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_espfit.dir/build.make xtp/src/tests/CMakeFiles/unit_test_espfit.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_espfit.dir/test_espfit.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_espfit.dir/test_espfit.cc.o -MF CMakeFiles/unit_test_espfit.dir/test_espfit.cc.o.d -o CMakeFiles/unit_test_espfit.dir/test_espfit.cc.o -c /<>/xtp/src/tests/test_espfit.cc [ 79%] Linking CXX executable unit_test_eris cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_eris.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_eris.dir/test_eris.cc.o -o unit_test_eris -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target unit_test_eris make -f xtp/src/tests/CMakeFiles/unit_test_glink.dir/build.make xtp/src/tests/CMakeFiles/unit_test_glink.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_glink.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_glink.dir/build.make xtp/src/tests/CMakeFiles/unit_test_glink.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_glink.dir/test_glink.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_glink.dir/test_glink.cc.o -MF CMakeFiles/unit_test_glink.dir/test_glink.cc.o.d -o CMakeFiles/unit_test_glink.dir/test_glink.cc.o -c /<>/xtp/src/tests/test_glink.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/espfit.h:25, from /<>/xtp/src/tests/test_espfit.cc:25: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 79%] Linking CXX executable unit_test_glink cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_glink.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_glink.dir/test_glink.cc.o -o unit_test_glink -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 79%] Built target unit_test_glink make -f xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/build.make xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/build.make xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/test_hdf5.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/test_hdf5.cc.o -MF CMakeFiles/unit_test_hdf5.dir/test_hdf5.cc.o.d -o CMakeFiles/unit_test_hdf5.dir/test_hdf5.cc.o -c /<>/xtp/src/tests/test_hdf5.cc /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/src/tests/test_hdf5.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/tests/test_hdf5.cc:246:17: required from here 246 | seg.WriteToCpt(w); | ~~~~~~~~~~~~~~^~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/src/tests/test_hdf5.cc:246:17: required from here 246 | seg.WriteToCpt(w); | ~~~~~~~~~~~~~~^~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 79%] Linking CXX executable unit_test_espfit cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_espfit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_espfit.dir/test_espfit.cc.o -o unit_test_espfit -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target unit_test_espfit make -f xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/build.make xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/build.make xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/test_cubefile_writer.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/test_cubefile_writer.cc.o -MF CMakeFiles/unit_test_cubefile_writer.dir/test_cubefile_writer.cc.o.d -o CMakeFiles/unit_test_cubefile_writer.dir/test_cubefile_writer.cc.o -c /<>/xtp/src/tests/test_cubefile_writer.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/cubefile_writer.h:26, from /<>/xtp/src/tests/test_cubefile_writer.cc:30: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 79%] Linking CXX executable unit_test_hdf5 cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_hdf5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_hdf5.dir/test_hdf5.cc.o -o unit_test_hdf5 -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target unit_test_hdf5 make -f xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/build.make xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/build.make xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/test_densityintegration.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/test_densityintegration.cc.o -MF CMakeFiles/unit_test_densityintegration.dir/test_densityintegration.cc.o.d -o CMakeFiles/unit_test_densityintegration.dir/test_densityintegration.cc.o -c /<>/xtp/src/tests/test_densityintegration.cc [ 79%] Linking CXX executable unit_test_cubefile_writer cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_cubefile_writer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_cubefile_writer.dir/test_cubefile_writer.cc.o -o unit_test_cubefile_writer -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target unit_test_cubefile_writer make -f xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/test_vxc_potential.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/test_vxc_potential.cc.o -MF CMakeFiles/unit_test_vxc_potential.dir/test_vxc_potential.cc.o.d -o CMakeFiles/unit_test_vxc_potential.dir/test_vxc_potential.cc.o -c /<>/xtp/src/tests/test_vxc_potential.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_densityintegration.cc:30: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_vxc_potential.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 80%] Linking CXX executable unit_test_densityintegration cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_densityintegration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_densityintegration.dir/test_densityintegration.cc.o -o unit_test_densityintegration -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target unit_test_densityintegration make -f xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/test_vxc_grid.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/test_vxc_grid.cc.o -MF CMakeFiles/unit_test_vxc_grid.dir/test_vxc_grid.cc.o.d -o CMakeFiles/unit_test_vxc_grid.dir/test_vxc_grid.cc.o -c /<>/xtp/src/tests/test_vxc_grid.cc [ 80%] Linking CXX executable unit_test_vxc_potential cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_vxc_potential.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_vxc_potential.dir/test_vxc_potential.cc.o -o unit_test_vxc_potential -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target unit_test_vxc_potential make -f xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/test_regular_grid.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/test_regular_grid.cc.o -MF CMakeFiles/unit_test_regular_grid.dir/test_regular_grid.cc.o.d -o CMakeFiles/unit_test_regular_grid.dir/test_regular_grid.cc.o -c /<>/xtp/src/tests/test_regular_grid.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_vxc_grid.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_regular_grid.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 80%] Linking CXX executable unit_test_vxc_grid cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_vxc_grid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_vxc_grid.dir/test_vxc_grid.cc.o -o unit_test_vxc_grid -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target unit_test_vxc_grid make -f xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/test_orbitals.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/test_orbitals.cc.o -MF CMakeFiles/unit_test_orbitals.dir/test_orbitals.cc.o.d -o CMakeFiles/unit_test_orbitals.dir/test_orbitals.cc.o -c /<>/xtp/src/tests/test_orbitals.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_orbitals.cc:30: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 80%] Linking CXX executable unit_test_regular_grid cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_regular_grid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_regular_grid.dir/test_regular_grid.cc.o -o unit_test_regular_grid -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target unit_test_regular_grid make -f xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/build.make xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/build.make xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/test_polarsite.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/test_polarsite.cc.o -MF CMakeFiles/unit_test_polarsite.dir/test_polarsite.cc.o.d -o CMakeFiles/unit_test_polarsite.dir/test_polarsite.cc.o -c /<>/xtp/src/tests/test_polarsite.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 80%] Linking CXX executable unit_test_orbitals cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_orbitals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_orbitals.dir/test_orbitals.cc.o -o unit_test_orbitals -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target unit_test_orbitals make -f xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/build.make xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/build.make xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/test_staticsite.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/test_staticsite.cc.o -MF CMakeFiles/unit_test_staticsite.dir/test_staticsite.cc.o.d -o CMakeFiles/unit_test_staticsite.dir/test_staticsite.cc.o -c /<>/xtp/src/tests/test_staticsite.cc [ 81%] Linking CXX executable unit_test_polarsite cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_polarsite.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_polarsite.dir/test_polarsite.cc.o -o unit_test_polarsite -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target unit_test_polarsite make -f xtp/src/tests/CMakeFiles/unit_test_ppm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_ppm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_ppm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_ppm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_ppm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_ppm.dir/test_ppm.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_ppm.dir/test_ppm.cc.o -MF CMakeFiles/unit_test_ppm.dir/test_ppm.cc.o.d -o CMakeFiles/unit_test_ppm.dir/test_ppm.cc.o -c /<>/xtp/src/tests/test_ppm.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/aopotential.h:26, from /<>/xtp/src/tests/test_ppm.cc:25: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 81%] Linking CXX executable unit_test_staticsite cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_staticsite.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_staticsite.dir/test_staticsite.cc.o -o unit_test_staticsite -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target unit_test_staticsite make -f xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/test_qmnblist.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/test_qmnblist.cc.o -MF CMakeFiles/unit_test_qmnblist.dir/test_qmnblist.cc.o.d -o CMakeFiles/unit_test_qmnblist.dir/test_qmnblist.cc.o -c /<>/xtp/src/tests/test_qmnblist.cc /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/qmnblist.h:30, from /<>/xtp/src/tests/test_qmnblist.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 81%] Linking CXX executable unit_test_qmnblist cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_qmnblist.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_qmnblist.dir/test_qmnblist.cc.o -o unit_test_qmnblist -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target unit_test_qmnblist make -f xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/test_qmpair.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/test_qmpair.cc.o -MF CMakeFiles/unit_test_qmpair.dir/test_qmpair.cc.o.d -o CMakeFiles/unit_test_qmpair.dir/test_qmpair.cc.o -c /<>/xtp/src/tests/test_qmpair.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/src/tests/test_qmpair.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 83%] Linking CXX executable unit_test_qmpair cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_qmpair.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_qmpair.dir/test_qmpair.cc.o -o unit_test_qmpair -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 83%] Built target unit_test_qmpair make -f xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 83%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/test_qmstate.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/test_qmstate.cc.o -MF CMakeFiles/unit_test_qmstate.dir/test_qmstate.cc.o.d -o CMakeFiles/unit_test_qmstate.dir/test_qmstate.cc.o -c /<>/xtp/src/tests/test_qmstate.cc [ 83%] Linking CXX executable unit_test_ppm cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_ppm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_ppm.dir/test_ppm.cc.o -o unit_test_ppm -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 83%] Built target unit_test_ppm make -f xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 83%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/test_radial_euler_maclaurin_rule.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/test_radial_euler_maclaurin_rule.cc.o -MF CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/test_radial_euler_maclaurin_rule.cc.o.d -o CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/test_radial_euler_maclaurin_rule.cc.o -c /<>/xtp/src/tests/test_radial_euler_maclaurin_rule.cc [ 83%] Linking CXX executable unit_test_qmstate cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_qmstate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_qmstate.dir/test_qmstate.cc.o -o unit_test_qmstate -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 83%] Built target unit_test_qmstate make -f xtp/src/tests/CMakeFiles/unit_test_rpa.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rpa.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_rpa.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_rpa.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rpa.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 83%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_rpa.dir/test_rpa.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_rpa.dir/test_rpa.cc.o -MF CMakeFiles/unit_test_rpa.dir/test_rpa.cc.o.d -o CMakeFiles/unit_test_rpa.dir/test_rpa.cc.o -c /<>/xtp/src/tests/test_rpa.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_radial_euler_maclaurin_rule.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_rpa.cc:31: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 83%] Linking CXX executable unit_test_radial_euler_maclaurin_rule cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/test_radial_euler_maclaurin_rule.cc.o -o unit_test_radial_euler_maclaurin_rule -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 83%] Built target unit_test_radial_euler_maclaurin_rule make -f xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 83%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/test_rpa_h2p.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/test_rpa_h2p.cc.o -MF CMakeFiles/unit_test_rpa_h2p.dir/test_rpa_h2p.cc.o.d -o CMakeFiles/unit_test_rpa_h2p.dir/test_rpa_h2p.cc.o -c /<>/xtp/src/tests/test_rpa_h2p.cc [ 84%] Linking CXX executable unit_test_rpa cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_rpa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_rpa.dir/test_rpa.cc.o -o unit_test_rpa -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target unit_test_rpa make -f xtp/src/tests/CMakeFiles/unit_test_segment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_segment.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_segment.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_segment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_segment.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_segment.dir/test_segment.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_segment.dir/test_segment.cc.o -MF CMakeFiles/unit_test_segment.dir/test_segment.cc.o.d -o CMakeFiles/unit_test_segment.dir/test_segment.cc.o -c /<>/xtp/src/tests/test_segment.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_rpa_h2p.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/src/tests/test_segment.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 84%] Linking CXX executable unit_test_segment cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_segment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_segment.dir/test_segment.cc.o -o unit_test_segment -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target unit_test_segment make -f xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/test_aoshell.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/test_aoshell.cc.o -MF CMakeFiles/unit_test_aoshell.dir/test_aoshell.cc.o.d -o CMakeFiles/unit_test_aoshell.dir/test_aoshell.cc.o -c /<>/xtp/src/tests/test_aoshell.cc [ 84%] Linking CXX executable unit_test_rpa_h2p cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_rpa_h2p.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_rpa_h2p.dir/test_rpa_h2p.cc.o -o unit_test_rpa_h2p -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target unit_test_rpa_h2p make -f xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/test_sphere_lebedev_rule.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/test_sphere_lebedev_rule.cc.o -MF CMakeFiles/unit_test_sphere_lebedev_rule.dir/test_sphere_lebedev_rule.cc.o.d -o CMakeFiles/unit_test_sphere_lebedev_rule.dir/test_sphere_lebedev_rule.cc.o -c /<>/xtp/src/tests/test_sphere_lebedev_rule.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_aoshell.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_sphere_lebedev_rule.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 84%] Linking CXX executable unit_test_aoshell cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_aoshell.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_aoshell.dir/test_aoshell.cc.o -o unit_test_aoshell -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target unit_test_aoshell make -f xtp/src/tests/CMakeFiles/unit_test_statetracker.dir/build.make 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-I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_statetracker.dir/test_statetracker.cc.o -MF CMakeFiles/unit_test_statetracker.dir/test_statetracker.cc.o.d -o CMakeFiles/unit_test_statetracker.dir/test_statetracker.cc.o -c /<>/xtp/src/tests/test_statetracker.cc [ 84%] Linking CXX executable unit_test_sphere_lebedev_rule cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_sphere_lebedev_rule.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_sphere_lebedev_rule.dir/test_sphere_lebedev_rule.cc.o -o unit_test_sphere_lebedev_rule -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target unit_test_sphere_lebedev_rule make -f xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/test_symmetric_matrix.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/test_symmetric_matrix.cc.o -MF CMakeFiles/unit_test_symmetric_matrix.dir/test_symmetric_matrix.cc.o.d -o CMakeFiles/unit_test_symmetric_matrix.dir/test_symmetric_matrix.cc.o -c /<>/xtp/src/tests/test_symmetric_matrix.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statetracker.h:29, from /<>/xtp/src/tests/test_statetracker.cc:33: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 84%] Linking CXX executable unit_test_symmetric_matrix cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_symmetric_matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_symmetric_matrix.dir/test_symmetric_matrix.cc.o -o unit_test_symmetric_matrix -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target unit_test_symmetric_matrix make -f xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/build.make xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/build.make xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/test_threecenter_dft.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/test_threecenter_dft.cc.o -MF CMakeFiles/unit_test_threecenter_dft.dir/test_threecenter_dft.cc.o.d -o CMakeFiles/unit_test_threecenter_dft.dir/test_threecenter_dft.cc.o -c /<>/xtp/src/tests/test_threecenter_dft.cc [ 85%] Linking CXX executable unit_test_statetracker cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_statetracker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_statetracker.dir/test_statetracker.cc.o -o unit_test_statetracker -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target unit_test_statetracker make -f xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/build.make xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/build.make xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/test_threecenter_gwbse.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/test_threecenter_gwbse.cc.o -MF CMakeFiles/unit_test_threecenter_gwbse.dir/test_threecenter_gwbse.cc.o.d -o CMakeFiles/unit_test_threecenter_gwbse.dir/test_threecenter_gwbse.cc.o -c /<>/xtp/src/tests/test_threecenter_gwbse.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/qmmolecule.h:25, from /<>/xtp/src/tests/test_threecenter_dft.cc:30: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/qmmolecule.h:25, from /<>/xtp/src/tests/test_threecenter_gwbse.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 87%] Linking CXX executable unit_test_threecenter_dft cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_threecenter_dft.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_threecenter_dft.dir/test_threecenter_dft.cc.o -o unit_test_threecenter_dft -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target unit_test_threecenter_dft make -f xtp/src/tests/CMakeFiles/unit_test_topology.dir/build.make xtp/src/tests/CMakeFiles/unit_test_topology.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_topology.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_topology.dir/build.make xtp/src/tests/CMakeFiles/unit_test_topology.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_topology.dir/test_topology.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_topology.dir/test_topology.cc.o -MF CMakeFiles/unit_test_topology.dir/test_topology.cc.o.d -o CMakeFiles/unit_test_topology.dir/test_topology.cc.o -c /<>/xtp/src/tests/test_topology.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/src/tests/test_topology.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 87%] Linking CXX executable unit_test_threecenter_gwbse cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_threecenter_gwbse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_threecenter_gwbse.dir/test_threecenter_gwbse.cc.o -o unit_test_threecenter_gwbse -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target unit_test_threecenter_gwbse make -f xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/test_sigma_exact.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/test_sigma_exact.cc.o -MF CMakeFiles/unit_test_sigma_exact.dir/test_sigma_exact.cc.o.d -o CMakeFiles/unit_test_sigma_exact.dir/test_sigma_exact.cc.o -c /<>/xtp/src/tests/test_sigma_exact.cc [ 87%] Linking CXX executable unit_test_topology cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_topology.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_topology.dir/test_topology.cc.o -o unit_test_topology -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target unit_test_topology make -f xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/test_sigma_ppm.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/test_sigma_ppm.cc.o -MF CMakeFiles/unit_test_sigma_ppm.dir/test_sigma_ppm.cc.o.d -o CMakeFiles/unit_test_sigma_ppm.dir/test_sigma_ppm.cc.o -c /<>/xtp/src/tests/test_sigma_ppm.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_sigma_exact.cc:33: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_sigma_ppm.cc:33: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 87%] Linking CXX executable unit_test_sigma_exact cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_sigma_exact.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_sigma_exact.dir/test_sigma_exact.cc.o -o unit_test_sigma_exact -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target unit_test_sigma_exact make -f xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/test_sigma_cda.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/test_sigma_cda.cc.o -MF CMakeFiles/unit_test_sigma_cda.dir/test_sigma_cda.cc.o.d -o CMakeFiles/unit_test_sigma_cda.dir/test_sigma_cda.cc.o -c /<>/xtp/src/tests/test_sigma_cda.cc [ 87%] Linking CXX executable unit_test_sigma_ppm cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_sigma_ppm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_sigma_ppm.dir/test_sigma_ppm.cc.o -o unit_test_sigma_ppm -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target unit_test_sigma_ppm make -f xtp/src/tests/CMakeFiles/unit_test_gw.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gw.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gw.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_gw.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gw.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_gw.dir/test_gw.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_gw.dir/test_gw.cc.o -MF CMakeFiles/unit_test_gw.dir/test_gw.cc.o.d -o CMakeFiles/unit_test_gw.dir/test_gw.cc.o -c /<>/xtp/src/tests/test_gw.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_sigma_cda.cc:33: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/gw.h:26, from /<>/xtp/src/tests/test_gw.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 88%] Linking CXX executable unit_test_sigma_cda cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_sigma_cda.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_sigma_cda.dir/test_sigma_cda.cc.o -o unit_test_sigma_cda -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target unit_test_sigma_cda make -f xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/test_bse_operator.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/test_bse_operator.cc.o -MF CMakeFiles/unit_test_bse_operator.dir/test_bse_operator.cc.o.d -o CMakeFiles/unit_test_bse_operator.dir/test_bse_operator.cc.o -c /<>/xtp/src/tests/test_bse_operator.cc [ 88%] Linking CXX executable unit_test_gw cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_gw.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_gw.dir/test_gw.cc.o -o unit_test_gw -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target unit_test_gw make -f xtp/src/tests/CMakeFiles/unit_test_davidson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_davidson.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_davidson.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_davidson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_davidson.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_davidson.dir/test_davidson.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_davidson.dir/test_davidson.cc.o -MF CMakeFiles/unit_test_davidson.dir/test_davidson.cc.o.d -o CMakeFiles/unit_test_davidson.dir/test_davidson.cc.o -c /<>/xtp/src/tests/test_davidson.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_bse_operator.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 88%] Linking CXX executable unit_test_bse_operator cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_bse_operator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_bse_operator.dir/test_bse_operator.cc.o -o unit_test_bse_operator -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target unit_test_bse_operator make -f xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/build.make xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/build.make xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/test_trustregion.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/test_trustregion.cc.o -MF CMakeFiles/unit_test_trustregion.dir/test_trustregion.cc.o.d -o CMakeFiles/unit_test_trustregion.dir/test_trustregion.cc.o -c /<>/xtp/src/tests/test_trustregion.cc [ 88%] Linking CXX executable unit_test_trustregion cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_trustregion.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_trustregion.dir/test_trustregion.cc.o -o unit_test_trustregion -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target unit_test_trustregion make -f xtp/src/tests/CMakeFiles/unit_test_gnode.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gnode.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gnode.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_gnode.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gnode.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_gnode.dir/test_gnode.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_gnode.dir/test_gnode.cc.o -MF CMakeFiles/unit_test_gnode.dir/test_gnode.cc.o.d -o CMakeFiles/unit_test_gnode.dir/test_gnode.cc.o -c /<>/xtp/src/tests/test_gnode.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/gnode.h:25, from /<>/xtp/src/tests/test_gnode.cc:32: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 89%] Linking CXX executable unit_test_gnode cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_gnode.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_gnode.dir/test_gnode.cc.o -o unit_test_gnode 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make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target unit_test_gnode make -f xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 90%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/test_vc2index.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/test_vc2index.cc.o -MF CMakeFiles/unit_test_vc2index.dir/test_vc2index.cc.o.d -o CMakeFiles/unit_test_vc2index.dir/test_vc2index.cc.o -c /<>/xtp/src/tests/test_vc2index.cc [ 90%] Linking CXX executable unit_test_vc2index cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_vc2index.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_vc2index.dir/test_vc2index.cc.o -o unit_test_vc2index -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 90%] Built target unit_test_vc2index make -f xtp/src/tests/CMakeFiles/unit_test_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_grid.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_grid.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_grid.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_grid.dir/test_grid.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_grid.dir/test_grid.cc.o -MF CMakeFiles/unit_test_grid.dir/test_grid.cc.o.d -o CMakeFiles/unit_test_grid.dir/test_grid.cc.o -c /<>/xtp/src/tests/test_grid.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/qmmolecule.h:25, from /<>/xtp/include/votca/xtp/grid.h:31, from /<>/xtp/src/tests/test_grid.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 92%] Linking CXX executable unit_test_grid cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_grid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_grid.dir/test_grid.cc.o -o unit_test_grid -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_grid make -f xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/build.make xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/build.make xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/test_segmentmapper.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/test_segmentmapper.cc.o -MF CMakeFiles/unit_test_segmentmapper.dir/test_segmentmapper.cc.o.d -o CMakeFiles/unit_test_segmentmapper.dir/test_segmentmapper.cc.o -c /<>/xtp/src/tests/test_segmentmapper.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/segmentmapper.h:30, from /<>/xtp/src/tests/test_segmentmapper.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 92%] Linking CXX executable unit_test_davidson cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_davidson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_davidson.dir/test_davidson.cc.o -o unit_test_davidson -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_davidson make -f xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/test_eeinteractor.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/test_eeinteractor.cc.o -MF CMakeFiles/unit_test_eeinteractor.dir/test_eeinteractor.cc.o.d -o CMakeFiles/unit_test_eeinteractor.dir/test_eeinteractor.cc.o -c /<>/xtp/src/tests/test_eeinteractor.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/eeinteractor.h:25, from /<>/xtp/include/votca/xtp/dipoledipoleinteraction.h:23, from /<>/xtp/src/tests/test_eeinteractor.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 92%] Linking CXX executable unit_test_segmentmapper cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_segmentmapper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_segmentmapper.dir/test_segmentmapper.cc.o -o unit_test_segmentmapper -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_segmentmapper make -f xtp/src/tests/CMakeFiles/unit_test_hist.dir/build.make xtp/src/tests/CMakeFiles/unit_test_hist.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_hist.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_hist.dir/build.make xtp/src/tests/CMakeFiles/unit_test_hist.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_hist.dir/test_hist.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_hist.dir/test_hist.cc.o -MF CMakeFiles/unit_test_hist.dir/test_hist.cc.o.d -o CMakeFiles/unit_test_hist.dir/test_hist.cc.o -c /<>/xtp/src/tests/test_hist.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/hist.h:25, from /<>/xtp/src/tests/test_hist.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/hist.h:101:4: required from ‘void votca::xtp::hist::WriteMetric(const T&, std::string, votca::xtp::CheckpointWriter&) const [with T = double; std::string = std::__cxx11::basic_string]’ 101 | w(metric, tag); | ~^~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/hist.h:68:7: required from ‘void votca::xtp::hist::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = double]’ 68 | WriteMetric(metric_, "metric", w); | ^~~~~~~~~~~ /<>/xtp/src/tests/test_hist.cc:50:17: required from here 50 | h.WriteToCpt(w); | ~~~~~~~~~~~~^~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 92%] Linking CXX executable unit_test_hist cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_hist.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_hist.dir/test_hist.cc.o -o unit_test_hist -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_hist make -f xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/test_qmfragment.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/test_qmfragment.cc.o -MF CMakeFiles/unit_test_qmfragment.dir/test_qmfragment.cc.o.d -o CMakeFiles/unit_test_qmfragment.dir/test_qmfragment.cc.o -c /<>/xtp/src/tests/test_qmfragment.cc [ 92%] Linking CXX executable unit_test_eeinteractor cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_eeinteractor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_eeinteractor.dir/test_eeinteractor.cc.o -o unit_test_eeinteractor -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_eeinteractor make -f xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/build.make xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/build.make xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/test_jobtopology.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/test_jobtopology.cc.o -MF CMakeFiles/unit_test_jobtopology.dir/test_jobtopology.cc.o.d -o CMakeFiles/unit_test_jobtopology.dir/test_jobtopology.cc.o -c /<>/xtp/src/tests/test_jobtopology.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/bse_population.h:25, from /<>/xtp/include/votca/xtp/qmfragment.h:26, from /<>/xtp/src/tests/test_qmfragment.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 92%] Linking CXX executable unit_test_qmfragment cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_qmfragment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_qmfragment.dir/test_qmfragment.cc.o -o unit_test_qmfragment -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/region.h:30, from /<>/xtp/include/votca/xtp/jobtopology.h:27, from /<>/xtp/src/tests/test_jobtopology.cc:24: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_qmfragment make -f xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/test_dipoledipoleinteraction.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/test_dipoledipoleinteraction.cc.o -MF CMakeFiles/unit_test_dipoledipoleinteraction.dir/test_dipoledipoleinteraction.cc.o.d -o CMakeFiles/unit_test_dipoledipoleinteraction.dir/test_dipoledipoleinteraction.cc.o -c /<>/xtp/src/tests/test_dipoledipoleinteraction.cc /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/classicalsegment.h:25, from /<>/xtp/include/votca/xtp/eeinteractor.h:25, from /<>/xtp/include/votca/xtp/dipoledipoleinteraction.h:23, from /<>/xtp/src/tests/test_dipoledipoleinteraction.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 92%] Linking CXX executable unit_test_jobtopology cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_jobtopology.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_jobtopology.dir/test_jobtopology.cc.o -o unit_test_jobtopology -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_jobtopology make -f xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/test_populationanalysis.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/test_populationanalysis.cc.o -MF CMakeFiles/unit_test_populationanalysis.dir/test_populationanalysis.cc.o.d -o CMakeFiles/unit_test_populationanalysis.dir/test_populationanalysis.cc.o -c /<>/xtp/src/tests/test_populationanalysis.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::PolarSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::PolarSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/populationanalysis.h:26, from /<>/xtp/src/tests/test_populationanalysis.cc:32: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ [ 92%] Linking CXX executable unit_test_dipoledipoleinteraction cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_dipoledipoleinteraction.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_dipoledipoleinteraction.dir/test_dipoledipoleinteraction.cc.o -o unit_test_dipoledipoleinteraction -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_dipoledipoleinteraction make -f xtp/src/tests/CMakeFiles/unit_test_orca.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orca.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_orca.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_orca.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orca.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_orca.dir/test_orca.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_orca.dir/test_orca.cc.o -MF CMakeFiles/unit_test_orca.dir/test_orca.cc.o.d -o CMakeFiles/unit_test_orca.dir/test_orca.cc.o -c /<>/xtp/src/tests/test_orca.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_orca.cc:30: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 92%] Linking CXX executable unit_test_populationanalysis cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_populationanalysis.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_populationanalysis.dir/test_populationanalysis.cc.o -o unit_test_populationanalysis -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_populationanalysis make -f xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/test_dftengine.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/test_dftengine.cc.o -MF CMakeFiles/unit_test_dftengine.dir/test_dftengine.cc.o.d -o CMakeFiles/unit_test_dftengine.dir/test_dftengine.cc.o -c /<>/xtp/src/tests/test_dftengine.cc /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::StaticSite; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::StaticSite]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/dftengine.h:30, from /<>/xtp/src/tests/test_dftengine.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 92%] Linking CXX executable unit_test_orca cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_orca.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_orca.dir/test_orca.cc.o -o unit_test_orca -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_orca make -f xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/test_bsecoupling.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/test_bsecoupling.cc.o -MF CMakeFiles/unit_test_bsecoupling.dir/test_bsecoupling.cc.o.d -o CMakeFiles/unit_test_bsecoupling.dir/test_bsecoupling.cc.o -c /<>/xtp/src/tests/test_bsecoupling.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/couplingbase.h:29, from /<>/xtp/include/votca/xtp/bsecoupling.h:26, from /<>/xtp/src/tests/test_bsecoupling.cc:26: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 92%] Linking CXX executable unit_test_dftengine cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_dftengine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_dftengine.dir/test_dftengine.cc.o -o unit_test_dftengine -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_dftengine make -f xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/test_rate_engine.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/test_rate_engine.cc.o -MF CMakeFiles/unit_test_rate_engine.dir/test_rate_engine.cc.o.d -o CMakeFiles/unit_test_rate_engine.dir/test_rate_engine.cc.o -c /<>/xtp/src/tests/test_rate_engine.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/atomcontainer.h:34, from /<>/xtp/include/votca/xtp/segment.h:30, from /<>/xtp/include/votca/xtp/qmpair.h:32, from /<>/xtp/include/votca/xtp/rate_engine.h:26, from /<>/xtp/src/tests/test_rate_engine.cc:25: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::Atom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::Atom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 92%] Linking CXX executable unit_test_bsecoupling cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_bsecoupling.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_bsecoupling.dir/test_bsecoupling.cc.o -o unit_test_bsecoupling -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_bsecoupling make -f xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/test_DeltaQ_filter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/test_DeltaQ_filter.cc.o -MF CMakeFiles/unit_test_DeltaQ_filter.dir/test_DeltaQ_filter.cc.o.d -o CMakeFiles/unit_test_DeltaQ_filter.dir/test_DeltaQ_filter.cc.o -c /<>/xtp/src/tests/test_DeltaQ_filter.cc [ 93%] Linking CXX executable unit_test_rate_engine cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_rate_engine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_rate_engine.dir/test_rate_engine.cc.o -o unit_test_rate_engine -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target unit_test_rate_engine make -f xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/test_oscillatorstrength_filter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/test_oscillatorstrength_filter.cc.o -MF CMakeFiles/unit_test_oscillatorstrength_filter.dir/test_oscillatorstrength_filter.cc.o.d -o CMakeFiles/unit_test_oscillatorstrength_filter.dir/test_oscillatorstrength_filter.cc.o -c /<>/xtp/src/tests/test_oscillatorstrength_filter.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statefilter_base.h:33, from /<>/xtp/include/votca/xtp/filterfactory.h:28, from /<>/xtp/src/tests/test_DeltaQ_filter.cc:28: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statefilter_base.h:33, from /<>/xtp/include/votca/xtp/filterfactory.h:28, from /<>/xtp/src/tests/test_oscillatorstrength_filter.cc:30: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 93%] Linking CXX executable unit_test_DeltaQ_filter cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_DeltaQ_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_DeltaQ_filter.dir/test_DeltaQ_filter.cc.o -o unit_test_DeltaQ_filter 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make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target unit_test_DeltaQ_filter make -f xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/test_localisation_filter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/test_localisation_filter.cc.o -MF CMakeFiles/unit_test_localisation_filter.dir/test_localisation_filter.cc.o.d -o CMakeFiles/unit_test_localisation_filter.dir/test_localisation_filter.cc.o -c /<>/xtp/src/tests/test_localisation_filter.cc [ 93%] Linking CXX executable unit_test_oscillatorstrength_filter cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_oscillatorstrength_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_oscillatorstrength_filter.dir/test_oscillatorstrength_filter.cc.o -o unit_test_oscillatorstrength_filter -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target unit_test_oscillatorstrength_filter make -f xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/test_density_filter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/test_density_filter.cc.o -MF CMakeFiles/unit_test_density_filter.dir/test_density_filter.cc.o.d -o CMakeFiles/unit_test_density_filter.dir/test_density_filter.cc.o -c /<>/xtp/src/tests/test_density_filter.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statefilter_base.h:33, from /<>/xtp/include/votca/xtp/filterfactory.h:28, from /<>/xtp/src/tests/test_localisation_filter.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statefilter_base.h:33, from /<>/xtp/include/votca/xtp/filterfactory.h:28, from /<>/xtp/src/tests/test_density_filter.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 93%] Linking CXX executable unit_test_localisation_filter cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_localisation_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_localisation_filter.dir/test_localisation_filter.cc.o -o unit_test_localisation_filter -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target unit_test_localisation_filter make -f xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/test_overlap_filter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/test_overlap_filter.cc.o -MF CMakeFiles/unit_test_overlap_filter.dir/test_overlap_filter.cc.o.d -o CMakeFiles/unit_test_overlap_filter.dir/test_overlap_filter.cc.o -c /<>/xtp/src/tests/test_overlap_filter.cc [ 93%] Linking CXX executable unit_test_density_filter cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_density_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_density_filter.dir/test_density_filter.cc.o -o unit_test_density_filter -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target unit_test_density_filter make -f xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/test_newton_rapson.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/test_newton_rapson.cc.o -MF CMakeFiles/unit_test_newton_rapson.dir/test_newton_rapson.cc.o.d -o CMakeFiles/unit_test_newton_rapson.dir/test_newton_rapson.cc.o -c /<>/xtp/src/tests/test_newton_rapson.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/statefilter_base.h:33, from /<>/xtp/include/votca/xtp/filterfactory.h:28, from /<>/xtp/src/tests/test_overlap_filter.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 93%] Linking CXX executable unit_test_newton_rapson cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_newton_rapson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_newton_rapson.dir/test_newton_rapson.cc.o -o unit_test_newton_rapson -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target unit_test_newton_rapson make -f xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/build.make xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/build.make xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/test_indexparser.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/test_indexparser.cc.o -MF CMakeFiles/unit_test_indexparser.dir/test_indexparser.cc.o.d -o CMakeFiles/unit_test_indexparser.dir/test_indexparser.cc.o -c /<>/xtp/src/tests/test_indexparser.cc [ 93%] Linking CXX executable unit_test_overlap_filter cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_overlap_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_overlap_filter.dir/test_overlap_filter.cc.o -o unit_test_overlap_filter -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target unit_test_overlap_filter make -f xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/test_orbreorder.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/test_orbreorder.cc.o -MF CMakeFiles/unit_test_orbreorder.dir/test_orbreorder.cc.o.d -o CMakeFiles/unit_test_orbreorder.dir/test_orbreorder.cc.o -c /<>/xtp/src/tests/test_orbreorder.cc [ 93%] Linking CXX executable unit_test_indexparser cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_indexparser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_indexparser.dir/test_indexparser.cc.o -o unit_test_indexparser -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target unit_test_indexparser make -f xtp/src/tests/CMakeFiles/unit_test_molden.dir/build.make xtp/src/tests/CMakeFiles/unit_test_molden.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_molden.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_molden.dir/build.make xtp/src/tests/CMakeFiles/unit_test_molden.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_molden.dir/test_molden.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_molden.dir/test_molden.cc.o -MF CMakeFiles/unit_test_molden.dir/test_molden.cc.o.d -o CMakeFiles/unit_test_molden.dir/test_molden.cc.o -c /<>/xtp/src/tests/test_molden.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_orbreorder.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/molden.h:26, from /<>/xtp/src/tests/test_molden.cc:30: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 94%] Linking CXX executable unit_test_orbreorder cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_orbreorder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_orbreorder.dir/test_orbreorder.cc.o -o unit_test_orbreorder -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target unit_test_orbreorder make -f xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 94%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/test_gaussianwriter.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/test_gaussianwriter.cc.o -MF CMakeFiles/unit_test_gaussianwriter.dir/test_gaussianwriter.cc.o.d -o CMakeFiles/unit_test_gaussianwriter.dir/test_gaussianwriter.cc.o -c /<>/xtp/src/tests/test_gaussianwriter.cc [ 94%] Linking CXX executable unit_test_molden cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_molden.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_molden.dir/test_molden.cc.o -o unit_test_molden -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target unit_test_molden make -f xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/build.make xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/build.make xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 94%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/test_incrementalfockbuilder.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/test_incrementalfockbuilder.cc.o -MF CMakeFiles/unit_test_incrementalfockbuilder.dir/test_incrementalfockbuilder.cc.o.d -o CMakeFiles/unit_test_incrementalfockbuilder.dir/test_incrementalfockbuilder.cc.o -c /<>/xtp/src/tests/test_incrementalfockbuilder.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/gaussianwriter.h:26, from /<>/xtp/src/tests/test_gaussianwriter.cc:32: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 94%] Linking CXX executable unit_test_incrementalfockbuilder cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_incrementalfockbuilder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_incrementalfockbuilder.dir/test_incrementalfockbuilder.cc.o -o unit_test_incrementalfockbuilder -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target unit_test_incrementalfockbuilder make -f xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/build.make xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/build.make xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 94%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/test_parallelism.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/test_parallelism.cc.o -MF CMakeFiles/unit_test_parallelism.dir/test_parallelism.cc.o.d -o CMakeFiles/unit_test_parallelism.dir/test_parallelism.cc.o -c /<>/xtp/src/tests/test_parallelism.cc [ 94%] Linking CXX executable unit_test_gaussianwriter cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_gaussianwriter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_gaussianwriter.dir/test_gaussianwriter.cc.o -o unit_test_gaussianwriter -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target unit_test_gaussianwriter make -f xtp/src/tests/CMakeFiles/unit_test_anderson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_anderson.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_anderson.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_anderson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_anderson.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_anderson.dir/test_anderson.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_anderson.dir/test_anderson.cc.o -MF CMakeFiles/unit_test_anderson.dir/test_anderson.cc.o.d -o CMakeFiles/unit_test_anderson.dir/test_anderson.cc.o -c /<>/xtp/src/tests/test_anderson.cc [ 97%] Linking CXX executable unit_test_parallelism cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_parallelism.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_parallelism.dir/test_parallelism.cc.o -o unit_test_parallelism -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target unit_test_parallelism make -f xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/test_gaussian_quadratures.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/test_gaussian_quadratures.cc.o -MF CMakeFiles/unit_test_gaussian_quadratures.dir/test_gaussian_quadratures.cc.o.d -o CMakeFiles/unit_test_gaussian_quadratures.dir/test_gaussian_quadratures.cc.o -c /<>/xtp/src/tests/test_gaussian_quadratures.cc [ 97%] Linking CXX executable unit_test_anderson cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_anderson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_anderson.dir/test_anderson.cc.o -o unit_test_anderson -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target unit_test_anderson make -f xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/build.make xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/build.make xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/test_pmlocalization.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/test_pmlocalization.cc.o -MF CMakeFiles/unit_test_pmlocalization.dir/test_pmlocalization.cc.o.d -o CMakeFiles/unit_test_pmlocalization.dir/test_pmlocalization.cc.o -c /<>/xtp/src/tests/test_pmlocalization.cc [ 97%] Linking CXX executable unit_test_gaussian_quadratures cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_gaussian_quadratures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_gaussian_quadratures.dir/test_gaussian_quadratures.cc.o -o unit_test_gaussian_quadratures -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target unit_test_gaussian_quadratures make -f xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/test_activedensitymatrix.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/test_activedensitymatrix.cc.o -MF CMakeFiles/unit_test_activedensitymatrix.dir/test_activedensitymatrix.cc.o.d -o CMakeFiles/unit_test_activedensitymatrix.dir/test_activedensitymatrix.cc.o -c /<>/xtp/src/tests/test_activedensitymatrix.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/src/tests/test_pmlocalization.cc:30: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/activedensitymatrix.h:24, from /<>/xtp/src/tests/test_activedensitymatrix.cc:29: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 98%] Linking CXX executable unit_test_pmlocalization cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_pmlocalization.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_pmlocalization.dir/test_pmlocalization.cc.o -o unit_test_pmlocalization -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target unit_test_pmlocalization make -f xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/test_activedftengine.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/test_activedftengine.cc.o -MF CMakeFiles/unit_test_activedftengine.dir/test_activedftengine.cc.o.d -o CMakeFiles/unit_test_activedftengine.dir/test_activedftengine.cc.o -c /<>/xtp/src/tests/test_activedftengine.cc [ 98%] Linking CXX executable unit_test_activedensitymatrix cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_activedensitymatrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_activedensitymatrix.dir/test_activedensitymatrix.cc.o -o unit_test_activedensitymatrix -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target unit_test_activedensitymatrix make -f xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/test_truncdftengine.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/test_truncdftengine.cc.o -MF CMakeFiles/unit_test_truncdftengine.dir/test_truncdftengine.cc.o.d -o CMakeFiles/unit_test_truncdftengine.dir/test_truncdftengine.cc.o -c /<>/xtp/src/tests/test_truncdftengine.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/dftengine.h:30, from /<>/xtp/src/tests/test_activedftengine.cc:26: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/ecpaobasis.h:24, from /<>/xtp/include/votca/xtp/dftengine.h:30, from /<>/xtp/src/tests/test_truncdftengine.cc:26: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 98%] Linking CXX executable unit_test_activedftengine cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_activedftengine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_activedftengine.dir/test_activedftengine.cc.o -o unit_test_activedftengine -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target unit_test_activedftengine make -f xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/build.make xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/build.make xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/test_diabatization.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/test_diabatization.cc.o -MF CMakeFiles/unit_test_diabatization.dir/test_diabatization.cc.o.d -o CMakeFiles/unit_test_diabatization.dir/test_diabatization.cc.o -c /<>/xtp/src/tests/test_diabatization.cc [ 98%] Linking CXX executable unit_test_truncdftengine cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_truncdftengine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_truncdftengine.dir/test_truncdftengine.cc.o -o unit_test_truncdftengine -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target unit_test_truncdftengine make -f xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/build.make xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/build.make xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/test_transition_densities.cc.o cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DXTP_TEST_DATA_FOLDER=\"/<>/xtp/src/tests/DataFiles\" -I/<>/xtp/include -I/usr/include/hdf5/serial -I/<>/obj-x86_64-linux-gnu/xtp/include -I/<>/obj-x86_64-linux-gnu/xtp/include/votca/xtp -I/<>/csg/include -I/<>/tools/include -I/<>/obj-x86_64-linux-gnu/tools/include/votca/tools -I/<>/obj-x86_64-linux-gnu/tools/include -isystem /usr/include/eigen3 -isystem /usr/include/libecpint -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -fopenmp -MD -MT xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/test_transition_densities.cc.o -MF CMakeFiles/unit_test_transition_densities.dir/test_transition_densities.cc.o.d -o CMakeFiles/unit_test_transition_densities.dir/test_transition_densities.cc.o -c /<>/xtp/src/tests/test_transition_densities.cc In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/erdiabatization.h:26, from /<>/xtp/src/tests/test_diabatization.cc:26: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = double; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = double; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/bse_population.h:50:6: required from here 50 | w(Gs, "groundstate"); | ~^~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ In file included from /<>/xtp/include/votca/xtp/checkpointreader.h:34, from /<>/xtp/include/votca/xtp/checkpoint.h:29, from /<>/xtp/include/votca/xtp/orbitals.h:31, from /<>/xtp/include/votca/xtp/transition_densities.h:29, from /<>/xtp/src/tests/test_transition_densities.cc:27: /<>/xtp/include/votca/xtp/checkpointtable.h: In member function ‘void votca::xtp::CptTable::initialize(const votca::xtp::CptLoc&, bool)’: /<>/xtp/include/votca/xtp/checkpointtable.h:81:12: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 81 | loc_ = loc; | ^~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:46, from /<>/xtp/include/votca/xtp/checkpoint.h:25: /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ In file included from /<>/xtp/include/votca/xtp/checkpoint.h:31: /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const std::string&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:178:52: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 178 | attr = loc.createAttribute(name, *strType, dp); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:33: /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:180:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 180 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const std::vector >&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:278:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 278 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:280:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 280 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In member function ‘void votca::xtp::CheckpointWriter::WriteData(const votca::xtp::CptLoc&, const votca::tools::EigenSystem&, const std::string&) const’: /<>/xtp/include/votca/xtp/checkpointwriter.h:294:36: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 294 | parent = loc.createGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:296:34: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 296 | parent = loc.openGroup(name); | ^ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = long int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:87:18: required from here 87 | WriteScalar(loc_, temp, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h: In instantiation of ‘votca::xtp::CptTable votca::xtp::CheckpointWriter::openTable(const std::string&, std::size_t, bool) [with T = votca::xtp::QMAtom; std::string = std::__cxx11::basic_string; std::size_t = long unsigned int]’: /<>/xtp/include/votca/xtp/atomcontainer.h:160:36: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 160 | CptTable table = w.openTable(element.identify() + "s", atomlist_.size()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ /usr/include/hdf5/serial/H5Group.h:62:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 62 | Group(const Group &original); | ^~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::CompType& H5::CompType::operator=(const H5::CompType&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:41: /usr/include/hdf5/serial/H5CompType.h:39:5: note: because ‘H5::CompType’ has user-provided ‘H5::CompType::CompType(const H5::CompType&)’ 39 | CompType(const CompType &original); | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: warning: implicitly-declared ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ is deprecated [-Wdeprecated-copy] 42 | class CptTable { | ^~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:25: /usr/include/hdf5/serial/H5DcreatProp.h:136:5: note: because ‘H5::DSetCreatPropList’ has user-provided ‘H5::DSetCreatPropList::DSetCreatPropList(const H5::DSetCreatPropList&)’ 136 | DSetCreatPropList(const DSetCreatPropList &orig); | ^~~~~~~~~~~~~~~~~ /usr/include/hdf5/serial/H5DcreatProp.h:28:17: warning: implicitly-declared ‘H5::ObjCreatPropList& H5::ObjCreatPropList::operator=(const H5::ObjCreatPropList&)’ is deprecated [-Wdeprecated-copy] 28 | class H5_DLLCPP DSetCreatPropList : public ObjCreatPropList { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:24: /usr/include/hdf5/serial/H5OcreatProp.h:52:5: note: because ‘H5::ObjCreatPropList’ has user-provided ‘H5::ObjCreatPropList::ObjCreatPropList(const H5::ObjCreatPropList&)’ 52 | ObjCreatPropList(const ObjCreatPropList &original); | ^~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointtable.h:42:7: note: synthesized method ‘H5::DSetCreatPropList& H5::DSetCreatPropList::operator=(const H5::DSetCreatPropList&)’ first required here 42 | class CptTable { | ^~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:132:60: note: synthesized method ‘votca::xtp::CptTable& votca::xtp::CptTable::operator=(votca::xtp::CptTable&&)’ first required here 132 | table = CptTable(name, sizeof(typename T::data), loc_); | ^ /<>/xtp/include/votca/xtp/checkpointwriter.h: In instantiation of ‘void votca::xtp::CheckpointWriter::WriteScalar(const votca::xtp::CptLoc&, const T&, const std::string&) const [with T = int; votca::xtp::CptLoc = H5::Group; std::string = std::__cxx11::basic_string]’: /<>/xtp/include/votca/xtp/checkpointwriter.h:74:18: required from ‘typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type votca::xtp::CheckpointWriter::operator()(const T&, const std::string&) const [with T = int; typename std::enable_if<(std::is_fundamental<_Tp>::value && (! std::is_same::value))>::type = void; std::string = std::__cxx11::basic_string]’ 74 | WriteScalar(loc_, v, name); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:158:6: required from ‘void votca::xtp::AtomContainer::WriteToCpt(votca::xtp::CheckpointWriter&) const [with T = votca::xtp::QMAtom]’ 158 | w(int(atomlist_.size()), "size"); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/xtp/include/votca/xtp/atomcontainer.h:155:16: required from here 155 | virtual void WriteToCpt(CheckpointWriter& w) const { | ^~~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:162:53: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 162 | attr = loc.createAttribute(name, *dataType, dp); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ /<>/xtp/include/votca/xtp/checkpointwriter.h:164:36: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy] 164 | attr = loc.openAttribute(name); | ^ /usr/include/hdf5/serial/H5Attribute.h:31:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’ 31 | Attribute(const Attribute &original); | ^~~~~~~~~ [ 98%] Linking CXX executable unit_test_diabatization cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_diabatization.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_diabatization.dir/test_diabatization.cc.o -o unit_test_diabatization -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target unit_test_diabatization make -f xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building xtp_parallel manpage cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /<>/tools/scripts/votca_help2doc --name xtp_parallel --format groff --out xtp_parallel.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target xtp_parallel_manpage make -f xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building xtp_map manpage cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /<>/tools/scripts/votca_help2doc --name xtp_map --format groff --out xtp_map.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target xtp_map_manpage make -f xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building xtp_run manpage cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /<>/tools/scripts/votca_help2doc --name xtp_run --format groff --out xtp_run.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target xtp_run_manpage make -f xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building xtp_tools manpage cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /<>/tools/scripts/votca_help2doc --name xtp_tools --format groff --out xtp_tools.man /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target xtp_tools_manpage make -f CMakeFiles/manpages.dir/build.make CMakeFiles/manpages.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/manpages.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/manpages.dir/build.make CMakeFiles/manpages.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/manpages.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target manpages [100%] Linking CXX executable unit_test_transition_densities cd /<>/obj-x86_64-linux-gnu/xtp/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_transition_densities.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now CMakeFiles/unit_test_transition_densities.dir/test_transition_densities.cc.o -o unit_test_transition_densities -Wl,-rpath,/<>/obj-x86_64-linux-gnu/xtp/src/libxtp:/<>/obj-x86_64-linux-gnu/csg/src/libcsg:/<>/obj-x86_64-linux-gnu/tools/src/libtools:/usr/lib/x86_64-linux-gnu/hdf5/serial ../libxtp/libvotca_xtp.so.2024 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/x86_64-linux-gnu/libint2.so.2.0.4 /usr/lib/x86_64-linux-gnu/libecpint.a ../../../csg/src/libcsg/libvotca_csg.so.2024 ../../../tools/src/libtools/libvotca_tools.so.2024 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libFaddeeva.a /usr/lib/x86_64-linux-gnu/libpugixml.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target unit_test_transition_densities make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' # temporarily use bundled copy of cma to build documentation - not yet packaged separately PYTHONPATH=/<>/debian/cma-3.2.0 \ make -C /<>/obj-x86_64-linux-gnu sphinx make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 sphinx make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 59 make -f CMakeFiles/Makefile2 share/sphinx/CMakeFiles/sphinx.dir/all make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f share/sphinx/CMakeFiles/xtp-tutorials_copy_rst.dir/build.make share/sphinx/CMakeFiles/xtp-tutorials_copy_rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/share/sphinx /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/share/sphinx /<>/obj-x86_64-linux-gnu/share/sphinx/CMakeFiles/xtp-tutorials_copy_rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f share/sphinx/CMakeFiles/xtp-tutorials_copy_rst.dir/build.make share/sphinx/CMakeFiles/xtp-tutorials_copy_rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/share/sphinx && /usr/bin/cmake -E copy_directory /<>/share/sphinx/xtp-tutorials /<>/obj-x86_64-linux-gnu/sphinx/xtp-tutorials make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target xtp-tutorials_copy_rst make -f tools/src/libtools/CMakeFiles/gitversion.dir/build.make tools/src/libtools/CMakeFiles/gitversion.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/libtools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/libtools /<>/obj-x86_64-linux-gnu/tools/src/libtools/CMakeFiles/gitversion.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/libtools/CMakeFiles/gitversion.dir/build.make tools/src/libtools/CMakeFiles/gitversion.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/tools/src/libtools && /usr/bin/cmake -DTOP_SOURCE_DIR="/<>" -DGIT_EXECUTABLE="" -P /<>/CMakeModules/gitversion.cmake make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target gitversion make -f tools/src/libtools/CMakeFiles/votca_tools.dir/build.make tools/src/libtools/CMakeFiles/votca_tools.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/libtools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/libtools /<>/obj-x86_64-linux-gnu/tools/src/libtools/CMakeFiles/votca_tools.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/libtools/CMakeFiles/votca_tools.dir/build.make tools/src/libtools/CMakeFiles/votca_tools.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'tools/src/libtools/CMakeFiles/votca_tools.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 8%] Built target votca_tools make -f tools/src/tools/CMakeFiles/votca_property.dir/build.make tools/src/tools/CMakeFiles/votca_property.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tools /<>/obj-x86_64-linux-gnu/tools/src/tools/CMakeFiles/votca_property.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tools/CMakeFiles/votca_property.dir/build.make tools/src/tools/CMakeFiles/votca_property.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'tools/src/tools/CMakeFiles/votca_property.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 8%] Built target votca_property make -f tools/src/tools/CMakeFiles/tools-tools-rst.dir/build.make tools/src/tools/CMakeFiles/tools-tools-rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tools /<>/obj-x86_64-linux-gnu/tools/src/tools/CMakeFiles/tools-tools-rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tools/CMakeFiles/tools-tools-rst.dir/build.make tools/src/tools/CMakeFiles/tools-tools-rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building votca_property rst doc cd /<>/obj-x86_64-linux-gnu/tools/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/tools/src/tools/votca_property --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/tools/votca_property.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target tools-tools-rst make -f csg/src/libcsg/CMakeFiles/votca_csg.dir/build.make csg/src/libcsg/CMakeFiles/votca_csg.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/libcsg /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/libcsg /<>/obj-x86_64-linux-gnu/csg/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/libcsg/CMakeFiles/votca_csg.dir/build.make csg/src/libcsg/CMakeFiles/votca_csg.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/libcsg/CMakeFiles/votca_csg.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target votca_csg make -f csg/src/tools/CMakeFiles/csg_imc_solve.dir/build.make csg/src/tools/CMakeFiles/csg_imc_solve.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_imc_solve.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_imc_solve.dir/build.make csg/src/tools/CMakeFiles/csg_imc_solve.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_imc_solve.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target csg_imc_solve make -f csg/src/tools/CMakeFiles/csg_reupdate.dir/build.make csg/src/tools/CMakeFiles/csg_reupdate.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_reupdate.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_reupdate.dir/build.make csg/src/tools/CMakeFiles/csg_reupdate.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_reupdate.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target csg_reupdate make -f csg/src/tools/CMakeFiles/csg_map.dir/build.make csg/src/tools/CMakeFiles/csg_map.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_map.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_map.dir/build.make csg/src/tools/CMakeFiles/csg_map.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_map.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target csg_map make -f csg/src/tools/CMakeFiles/csg_dump.dir/build.make csg/src/tools/CMakeFiles/csg_dump.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_dump.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dump.dir/build.make csg/src/tools/CMakeFiles/csg_dump.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_dump.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target csg_dump make -f csg/src/tools/CMakeFiles/csg_property.dir/build.make csg/src/tools/CMakeFiles/csg_property.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_property.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_property.dir/build.make csg/src/tools/CMakeFiles/csg_property.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_property.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target csg_property make -f csg/src/tools/CMakeFiles/csg_resample.dir/build.make csg/src/tools/CMakeFiles/csg_resample.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_resample.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_resample.dir/build.make csg/src/tools/CMakeFiles/csg_resample.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_resample.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target csg_resample make -f csg/src/tools/CMakeFiles/csg_stat.dir/build.make csg/src/tools/CMakeFiles/csg_stat.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_stat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_stat.dir/build.make csg/src/tools/CMakeFiles/csg_stat.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_stat.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target csg_stat make -f csg/src/tools/CMakeFiles/csg_fmatch.dir/build.make csg/src/tools/CMakeFiles/csg_fmatch.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_fmatch.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_fmatch.dir/build.make csg/src/tools/CMakeFiles/csg_fmatch.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_fmatch.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target csg_fmatch make -f csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build.make csg/src/tools/CMakeFiles/csg_gmxtopol.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_gmxtopol.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build.make csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target csg_gmxtopol make -f csg/src/tools/CMakeFiles/csg_dlptopol.dir/build.make csg/src/tools/CMakeFiles/csg_dlptopol.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_dlptopol.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dlptopol.dir/build.make csg/src/tools/CMakeFiles/csg_dlptopol.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_dlptopol.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target csg_dlptopol make -f csg/src/tools/CMakeFiles/csg_density.dir/build.make csg/src/tools/CMakeFiles/csg_density.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_density.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_density.dir/build.make csg/src/tools/CMakeFiles/csg_density.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_density.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target csg_density make -f csg/src/tools/CMakeFiles/csg-tools-rst.dir/build.make csg/src/tools/CMakeFiles/csg-tools-rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg-tools-rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg-tools-rst.dir/build.make csg/src/tools/CMakeFiles/csg-tools-rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building csg_reupdate rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_reupdate --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_reupdate.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 27%] Building csg_map rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_map --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_map.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 27%] Building csg_dump rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dump --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_dump.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 28%] Building csg_property rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_property --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_property.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 28%] Building csg_resample rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_resample --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_resample.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 28%] Building csg_stat rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_stat --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_stat.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 28%] Building csg_fmatch rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_fmatch --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_fmatch.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 28%] Building csg_gmxtopol rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_gmxtopol --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_gmxtopol.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 28%] Building csg_dlptopol rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dlptopol --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_dlptopol.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 28%] Building csg_density rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_density --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_density.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 28%] Building csg_imc_solve rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/tools && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_imc_solve --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_imc_solve.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target csg-tools-rst make -f csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target votca_csg_boltzmann make -f csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target csg_boltzmann make -f csg/src/csg_boltzmann/CMakeFiles/csg-boltzmann-rst.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg-boltzmann-rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/CMakeFiles/csg-boltzmann-rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csg_boltzmann/CMakeFiles/csg-boltzmann-rst.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg-boltzmann-rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building csg_boltzmann rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann && /<>/tools/scripts/votca_help2doc --name /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/csg_boltzmann --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_boltzmann.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target csg-boltzmann-rst make -f csg/src/csgapps/CMakeFiles/traj_force.dir/build.make csg/src/csgapps/CMakeFiles/traj_force.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/traj_force.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/traj_force.dir/build.make csg/src/csgapps/CMakeFiles/traj_force.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/traj_force.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target traj_force make -f csg/src/csgapps/CMakeFiles/fluctuations.dir/build.make csg/src/csgapps/CMakeFiles/fluctuations.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/fluctuations.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/fluctuations.dir/build.make csg/src/csgapps/CMakeFiles/fluctuations.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/fluctuations.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target fluctuations make -f csg/src/csgapps/CMakeFiles/orientcorr.dir/build.make csg/src/csgapps/CMakeFiles/orientcorr.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/orientcorr.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/orientcorr.dir/build.make csg/src/csgapps/CMakeFiles/orientcorr.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/orientcorr.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target orientcorr make -f csg/src/csgapps/CMakeFiles/part_dist.dir/build.make csg/src/csgapps/CMakeFiles/part_dist.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/part_dist.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/part_dist.dir/build.make csg/src/csgapps/CMakeFiles/part_dist.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/part_dist.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target part_dist make -f csg/src/csgapps/CMakeFiles/partial_rdf.dir/build.make csg/src/csgapps/CMakeFiles/partial_rdf.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/partial_rdf.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/partial_rdf.dir/build.make csg/src/csgapps/CMakeFiles/partial_rdf.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/partial_rdf.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target partial_rdf make -f csg/src/csgapps/CMakeFiles/radii.dir/build.make csg/src/csgapps/CMakeFiles/radii.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/radii.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/radii.dir/build.make csg/src/csgapps/CMakeFiles/radii.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/radii.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target radii make -f csg/src/csgapps/CMakeFiles/sphericalorder.dir/build.make csg/src/csgapps/CMakeFiles/sphericalorder.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/sphericalorder.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/sphericalorder.dir/build.make csg/src/csgapps/CMakeFiles/sphericalorder.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/sphericalorder.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target sphericalorder make -f csg/src/csgapps/CMakeFiles/csgapps-rst.dir/build.make csg/src/csgapps/CMakeFiles/csgapps-rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/csgapps-rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/csgapps-rst.dir/build.make csg/src/csgapps/CMakeFiles/csgapps-rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Building csg_fluctuations rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name fluctuations/csg_fluctuations --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_fluctuations.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building csg_orientcorr rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name orientcorr/csg_orientcorr --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_orientcorr.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building csg_part_dist rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name part_dist/csg_part_dist --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_part_dist.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building csg_partial_rdf rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name partial_rdf/csg_partial_rdf --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_partial_rdf.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building csg_radii rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name radii/csg_radii --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_radii.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building csg_sphericalorder rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name sphericalorder/csg_sphericalorder --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_sphericalorder.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building csg_traj_force rst doc cd /<>/obj-x86_64-linux-gnu/csg/src/csgapps && /<>/tools/scripts/votca_help2doc --name traj_force/csg_traj_force --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_traj_force.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target csgapps-rst make -f csg/scripts/CMakeFiles/csg-scripts-rst.dir/build.make csg/scripts/CMakeFiles/csg-scripts-rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/scripts /<>/obj-x86_64-linux-gnu/csg/scripts/CMakeFiles/csg-scripts-rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/scripts/CMakeFiles/csg-scripts-rst.dir/build.make csg/scripts/CMakeFiles/csg-scripts-rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Building csg_call rst doc cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_call.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building csg_inverse rst doc cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_inverse --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_inverse.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building tag_file.sh rst doc (from tag file) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ tag\ file --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/tag_file.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building dummy.sh rst doc (from dummy dummy) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ dummy\ dummy --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/dummy.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building functions_common.sh rst doc (from functions common) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ functions\ common --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/functions_common.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building inverse.sh rst doc (from csg master) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ csg\ master --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/inverse.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building check_csg_xml.py rst doc (from check csg_xml) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ check\ csg_xml --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/check_csg_xml.py.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building prepare_generic.sh rst doc (from prepare ibi) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ prepare\ ibi --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/prepare_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building prepare_iie.sh rst doc (from prepare iie) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ prepare\ iie --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/prepare_iie.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building prepare_imc.sh rst doc (from prepare imc) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ prepare\ imc --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/prepare_imc.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 33%] Building prepare_optimizer.sh rst doc (from prepare optimizer) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ prepare\ optimizer --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/prepare_optimizer.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 35%] Building prepare_re.sh rst doc (from prepare re) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ prepare\ re --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/prepare_re.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 35%] Building prepare_generic_single.sh rst doc (from prepare_single ibi) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ prepare_single\ ibi --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/prepare_generic_single.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 35%] Building prepare_optimizer_single.sh rst doc (from prepare_single optimizer) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ prepare_single\ optimizer --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/prepare_optimizer_single.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 35%] Building initialize_step_generic.sh rst doc (from initstep ibi) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ initstep\ ibi --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/initialize_step_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 35%] Building initialize_step_optimizer.sh rst doc (from initstep optimizer) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ initstep\ optimizer --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/initialize_step_optimizer.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 35%] Building initialize_step_re.sh rst doc (from initstep re) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ initstep\ re --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/initialize_step_re.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 35%] Building add_pot_generic.sh rst doc (from add_pot ibi) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ add_pot\ ibi --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/add_pot_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building pre_update_re.sh rst doc (from pre_update re) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ pre_update\ re --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/pre_update_re.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building post_update_generic.sh rst doc (from post_update ibi) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ post_update\ ibi --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/post_update_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building post_update_generic_single.sh rst doc (from post_update_single ibi) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ post_update_single\ ibi --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/post_update_generic_single.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building post_update_re_single.sh rst doc (from post_update_single re) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ post_update_single\ re --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/post_update_re_single.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building postupd_scale.sh rst doc (from postupd scale) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ scale --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postupd_scale.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building postupd_pressure.sh rst doc (from postupd pressure) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ pressure --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postupd_pressure.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building postupd_addlj.sh rst doc (from postupd lj) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ lj --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postupd_addlj.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building postupd_splinesmooth.sh rst doc (from postupd splinesmooth) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ splinesmooth --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postupd_splinesmooth.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building postupd_smooth.sh rst doc (from postupd smooth) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ smooth --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postupd_smooth.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building postadd_shift.sh rst doc (from postupd shift) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ shift --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postadd_shift.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building postadd_dummy.sh rst doc (from postupd dummy) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ dummy --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postadd_dummy.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building postupd_extrapolate.sh rst doc (from postupd extrapolate) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ extrapolate --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postupd_extrapolate.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 37%] Building postupd_kbibi_correction.sh rst doc (from postupd kbibi) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ kbibi --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postupd_kbibi_correction.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 38%] Building postupd_cibi_correction.sh rst doc (from postupd cibi) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ cibi --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postupd_cibi_correction.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 38%] Building postupd_ibi.sh rst doc (from postupd ibi) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postupd\ ibi --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postupd_ibi.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 40%] Building post_add.sh rst doc (from post add) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ post\ add --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/post_add.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 40%] Building post_add_single.sh rst doc (from post add_single) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ post\ add_single --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/post_add_single.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 40%] Building postadd_copyback.sh rst doc (from postadd copyback) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postadd\ copyback --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postadd_copyback.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 40%] Building postadd_compress.sh rst doc (from postadd compress) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postadd\ compress --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postadd_compress.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 42%] Building postadd_convergence.sh rst doc (from postadd convergence) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postadd\ convergence --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postadd_convergence.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 42%] Building postadd_acc_convergence.sh rst doc (from postadd acc_convergence) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postadd\ acc_convergence --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postadd_acc_convergence.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 42%] Building postadd_overwrite.sh rst doc (from postadd overwrite) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postadd\ overwrite --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postadd_overwrite.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 42%] Building postadd_plot.sh rst doc (from postadd plot) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postadd\ plot --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postadd_plot.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 42%] Building postadd_average.sh rst doc (from postadd average) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postadd\ average --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postadd_average.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 42%] Building postadd_smooth_at_cut_off.sh rst doc (from postadd smooth_at_cut_off) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ postadd\ smooth_at_cut_off --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/postadd_smooth_at_cut_off.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 42%] Building convergence_check_default.sh rst doc (from convergence_check default) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ convergence_check\ default --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/convergence_check_default.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 42%] Building resample_target.sh rst doc (from resample target) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ resample\ target --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/resample_target.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building update_ibi.sh rst doc (from update ibi) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ update\ ibi --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/update_ibi.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building update_ibi_single.sh rst doc (from update ibi_single) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ update\ ibi_single --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/update_ibi_single.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building update_ibi_pot.pl rst doc (from update ibi_pot) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ update\ ibi_pot --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/update_ibi_pot.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building update_iie.sh rst doc (from update iie) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ update\ iie --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/update_iie.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building iie.py rst doc (from update iie_pot) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ update\ iie_pot --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/iie.py.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building calc_rdf_generic.sh rst doc (from rdf_incl_intra generic) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ rdf_incl_intra\ generic --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/calc_rdf_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building update_imc.sh rst doc (from update imc) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ update\ imc --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/update_imc.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building update_imc_single.sh rst doc (from update imc_single) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ update\ imc_single --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/update_imc_single.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building optimizer_prepare_state.sh rst doc (from optimizer prepare_state) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ optimizer\ prepare_state --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/optimizer_prepare_state.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building optimizer_parameters_to_potential.sh rst doc (from optimizer parameters_to_potential) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ optimizer\ parameters_to_potential --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/optimizer_parameters_to_potential.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building optimizer_state_to_potentials.sh rst doc (from optimizer state_to_potentials) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ optimizer\ state_to_potentials --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/optimizer_state_to_potentials.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building optimizer_state_to_mapping.sh rst doc (from optimizer state_to_mapping) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ optimizer\ state_to_mapping --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/optimizer_state_to_mapping.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building update_optimizer.sh rst doc (from update optimizer) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ update\ optimizer --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/update_optimizer.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building update_optimizer_single.sh rst doc (from update optimizer_single) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ update\ optimizer_single --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/update_optimizer_single.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building optimizer_target_rdf.sh rst doc (from optimizer_target rdf) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ optimizer_target\ rdf --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/optimizer_target_rdf.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building optimizer_target_density.sh rst doc (from optimizer_target density) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ optimizer_target\ density --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/optimizer_target_density.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building optimizer_target_pressure.sh rst doc (from optimizer_target pressure) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ optimizer_target\ pressure --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/optimizer_target_pressure.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building simplex_downhill_processor.pl rst doc (from simplex precede_state) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ simplex\ precede_state --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/simplex_downhill_processor.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 44%] Building cma_processor.py rst doc (from cma precede_state) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ cma\ precede_state --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/cma_processor.py.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/csg/share/scripts/inverse/cma_processor.py:37: SyntaxWarning: invalid escape sequence '\s' m = re.match("^#State = \s*(\S*)", line) [ 45%] Building update_re.sh rst doc (from update re) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ update\ re --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/update_re.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 45%] Building calc_target_rdf_generic.sh rst doc (from calc target_rdf) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ calc\ target_rdf --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/calc_target_rdf_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 45%] Building pressure_cor_simple.pl rst doc (from pressure_cor simple) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ pressure_cor\ simple --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/pressure_cor_simple.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 45%] Building pressure_cor_wjk.pl rst doc (from pressure_cor wjk) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ pressure_cor\ wjk --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/pressure_cor_wjk.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 45%] Building lj_126.pl rst doc (from compute_lj 12_6) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ compute_lj\ 12_6 --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/lj_126.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 45%] Building kbibi_ramp_correction.pl rst doc (from kbibi ramp_correction) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ kbibi\ ramp_correction --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/kbibi_ramp_correction.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 45%] Building calc_kbint.sh rst doc (from calc kbint) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ calc\ kbint --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/calc_kbint.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 45%] Building add_POT.pl rst doc (from table add) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ add --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/add_POT.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 45%] Building table_integrate.pl rst doc (from table integrate) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ integrate --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_integrate.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 45%] Building table_extrapolate.pl rst doc (from table extrapolate) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ extrapolate --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_extrapolate.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 47%] Building merge_tables.pl rst doc (from table merge) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ merge --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/merge_tables.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 47%] Building table_smooth.pl rst doc (from table smooth) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ smooth --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_smooth.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 47%] Building table_smooth_at_cut_off.py rst doc (from table smooth_at_cut_off) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ smooth_at_cut_off --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_smooth_at_cut_off.py.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 47%] Building table_linearop.pl rst doc (from table linearop) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ linearop --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_linearop.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 47%] Building table_dummy.sh rst doc (from table dummy) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ dummy --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_dummy.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 47%] Building table_get_value.pl rst doc (from table get_value) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ get_value --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_get_value.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 47%] Building table_switch_border.pl rst doc (from table switch_border) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ switch_border --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_switch_border.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 47%] Building table_combine.pl rst doc (from table compare) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ compare --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_combine.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 47%] Building table_average.sh rst doc (from table average) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ average --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_average.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 49%] Building table_scale.pl rst doc (from table scale) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ scale --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_scale.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 50%] Building table_change_flag.sh rst doc (from table change_flag) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ change_flag --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_change_flag.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 50%] Building table_functional.sh rst doc (from table functional) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ table\ functional --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_functional.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 52%] Building potential_extrapolate.sh rst doc (from potential extrapolate) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ potential\ extrapolate --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/potential_extrapolate.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 52%] Building potential_shift.pl rst doc (from potential shift) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ potential\ shift --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/potential_shift.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 52%] Building table_to_tab.pl rst doc (from convert_potential tab) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ convert_potential\ tab --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_to_tab.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 54%] Building dist_adjust.pl rst doc (from dist adjust) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ dist\ adjust --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/dist_adjust.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 54%] Building dist_boltzmann_invert.pl rst doc (from dist invert) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ dist\ invert --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/dist_boltzmann_invert.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 54%] Building tables_jackknife.pl rst doc (from tables jackknife) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ tables\ jackknife --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/tables_jackknife.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 54%] Building initialize_step_genericsim.sh rst doc (from initstep gromacs) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ initstep\ gromacs --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/initialize_step_genericsim.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 54%] Building run_gromacs.sh rst doc (from run gromacs) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ run\ gromacs --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/run_gromacs.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 54%] Building clean_generic.sh rst doc (from clean gromacs) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ clean\ gromacs --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/clean_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 55%] Building calc_pressure_gromacs.sh rst doc (from pressure gromacs) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ pressure\ gromacs --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/calc_pressure_gromacs.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 55%] Building calc_pressure_lammps.sh rst doc (from pressure lammps) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ pressure\ lammps --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/calc_pressure_lammps.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building imc_stat_generic.sh rst doc (from imc_stat gromacs) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ imc_stat\ gromacs --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/imc_stat_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building calc_density_generic.sh rst doc (from density gromacs) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ density\ gromacs --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/calc_density_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building potential_to_gromacs.sh rst doc (from convert_potential gromacs) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ convert_potential\ gromacs --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/potential_to_gromacs.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building potentials_to_generic.sh rst doc (from convert_potentials gromacs) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ convert_potentials\ gromacs --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/potentials_to_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building table_to_xvg.pl rst doc (from convert_potential xvg) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ convert_potential\ xvg --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/table_to_xvg.pl.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building functions_gromacs.sh rst doc (from functions gromacs) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ functions\ gromacs --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/functions_gromacs.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building run_genericsim.sh rst doc (from run espresso) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ run\ espresso --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/run_genericsim.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building potential_to_generic.sh rst doc (from convert_potential espresso) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ convert_potential\ espresso --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/potential_to_generic.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building functions_genericsim.sh rst doc (from functions espresso) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ functions\ espresso --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/functions_genericsim.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building potential_to_lammps.sh rst doc (from convert_potential lammps) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ convert_potential\ lammps --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/potential_to_lammps.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building functions_dlpoly.sh rst doc (from functions dlpoly) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ functions\ dlpoly --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/functions_dlpoly.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building potential_to_dlpoly.sh rst doc (from convert_potential dlpoly) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ convert_potential\ dlpoly --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/potential_to_dlpoly.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building potentials_to_dlpoly.sh rst doc (from convert_potentials dlpoly) cd /<>/obj-x86_64-linux-gnu/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/<>/csg/share" PATH="/<>/csg/scripts:/<>/obj-x86_64-linux-gnu/csg/src/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" VOTCA_CSG_DEFAULTS="/<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml" /<>/tools/scripts/votca_help2doc --name /<>/csg/scripts/csg_call\ convert_potentials\ dlpoly --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/csg/scripts/potentials_to_dlpoly.sh.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target csg-scripts-rst make -f csg/share/xml/CMakeFiles/csg-xml-rst.dir/build.make csg/share/xml/CMakeFiles/csg-xml-rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/share/xml /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/share/xml /<>/obj-x86_64-linux-gnu/csg/share/xml/CMakeFiles/csg-xml-rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/share/xml/CMakeFiles/csg-xml-rst.dir/build.make csg/share/xml/CMakeFiles/csg-xml-rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Generating ../../../sphinx/csg/mapping.rst cd /<>/obj-x86_64-linux-gnu/csg/share/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/csg/share/xml/mapping.xml -m csg -o /<>/obj-x86_64-linux-gnu/sphinx/csg/mapping.rst [ 57%] Generating ../../../sphinx/csg/topol.rst cd /<>/obj-x86_64-linux-gnu/csg/share/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/csg/share/xml/topol.xml -m csg -o /<>/obj-x86_64-linux-gnu/sphinx/csg/topol.rst [ 57%] Generating ../../../sphinx/csg/csg_defaults.rst cd /<>/obj-x86_64-linux-gnu/csg/share/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/obj-x86_64-linux-gnu/csg/share/xml/csg_defaults.xml -m csg -o /<>/obj-x86_64-linux-gnu/sphinx/csg/csg_defaults.rst make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target csg-xml-rst make -f xtp/scripts/CMakeFiles/xtp-scripts-rst.dir/build.make xtp/scripts/CMakeFiles/xtp-scripts-rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp-scripts-rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp-scripts-rst.dir/build.make xtp/scripts/CMakeFiles/xtp-scripts-rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Building xtp_autogen_mapping rst doc cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /<>/tools/scripts/votca_help2doc --name /<>/xtp/scripts/xtp_autogen_mapping --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/xtp/xtp_autogen_mapping.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building xtp_basisset rst doc cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /<>/tools/scripts/votca_help2doc --name /<>/xtp/scripts/xtp_basisset --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/xtp/xtp_basisset.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 57%] Building xtp_modify_jobfile rst doc cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /<>/tools/scripts/votca_help2doc --name /<>/xtp/scripts/xtp_modify_jobfile --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/xtp/xtp_modify_jobfile.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 59%] Building xtp_qmmm2qm rst doc cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /<>/tools/scripts/votca_help2doc --name /<>/xtp/scripts/xtp_qmmm2qm --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/xtp/xtp_qmmm2qm.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 59%] Building xtp_update_mapfile rst doc cd /<>/obj-x86_64-linux-gnu/xtp/scripts && /<>/tools/scripts/votca_help2doc --name /<>/xtp/scripts/xtp_update_mapfile --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/xtp/xtp_update_mapfile.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 59%] Built target xtp-scripts-rst make -f xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build.make xtp/src/libxtp/CMakeFiles/votca_xtp.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/libxtp /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/libxtp /<>/obj-x86_64-linux-gnu/xtp/src/libxtp/CMakeFiles/votca_xtp.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build.make xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target votca_xtp make -f xtp/src/tools/CMakeFiles/xtp_parallel.dir/build.make xtp/src/tools/CMakeFiles/xtp_parallel.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_parallel.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_parallel.dir/build.make xtp/src/tools/CMakeFiles/xtp_parallel.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_parallel.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target xtp_parallel make -f xtp/src/tools/CMakeFiles/xtp_map.dir/build.make xtp/src/tools/CMakeFiles/xtp_map.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_map.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_map.dir/build.make xtp/src/tools/CMakeFiles/xtp_map.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_map.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target xtp_map make -f xtp/src/tools/CMakeFiles/xtp_run.dir/build.make xtp/src/tools/CMakeFiles/xtp_run.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_run.dir/build.make xtp/src/tools/CMakeFiles/xtp_run.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_run.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target xtp_run make -f xtp/src/tools/CMakeFiles/xtp_tools.dir/build.make xtp/src/tools/CMakeFiles/xtp_tools.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_tools.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_tools.dir/build.make xtp/src/tools/CMakeFiles/xtp_tools.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_tools.dir/build'. make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target xtp_tools make -f xtp/src/tools/CMakeFiles/xtp-tools-rst.dir/build.make xtp/src/tools/CMakeFiles/xtp-tools-rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp-tools-rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp-tools-rst.dir/build.make xtp/src/tools/CMakeFiles/xtp-tools-rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Building xtp_map rst doc cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /<>/tools/scripts/votca_help2doc --name xtp_map --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/xtp/xtp_map.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 91%] Building xtp_parallel rst doc cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /<>/tools/scripts/votca_help2doc --name xtp_parallel --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/xtp/xtp_parallel.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 91%] Building xtp_run rst doc cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /<>/tools/scripts/votca_help2doc --name xtp_run --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/xtp/xtp_run.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ [ 91%] Building xtp_tools rst doc cd /<>/obj-x86_64-linux-gnu/xtp/src/tools && /<>/tools/scripts/votca_help2doc --name xtp_tools --format rst --out /<>/obj-x86_64-linux-gnu/sphinx/xtp/xtp_tools.rst /<>/tools/scripts/votca_help2doc:37: SyntaxWarning: invalid escape sequence '\-' COPYRIGHT = """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ /<>/tools/scripts/votca_help2doc:240: SyntaxWarning: invalid escape sequence '\-' """ make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target xtp-tools-rst make -f xtp/share/xtp/xml/CMakeFiles/xtp-xml-rst.dir/build.make xtp/share/xtp/xml/CMakeFiles/xtp-xml-rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/share/xtp/xml /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml/CMakeFiles/xtp-xml-rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/share/xtp/xml/CMakeFiles/xtp-xml-rst.dir/build.make xtp/share/xtp/xml/CMakeFiles/xtp-xml-rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Generating ../../../../sphinx/xtp/apdft.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/apdft.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/apdft.rst [ 91%] Generating ../../../../sphinx/xtp/coupling.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/coupling.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/coupling.rst [ 93%] Generating ../../../../sphinx/xtp/densityanalysis.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/densityanalysis.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/densityanalysis.rst [ 93%] Generating ../../../../sphinx/xtp/dftgwbse.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/dftgwbse.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/dftgwbse.rst [ 93%] Generating ../../../../sphinx/xtp/diabatization.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/diabatization.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/diabatization.rst [ 93%] Generating ../../../../sphinx/xtp/eanalyze.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/eanalyze.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/eanalyze.rst [ 93%] Generating ../../../../sphinx/xtp/einternal.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/einternal.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/einternal.rst [ 93%] Generating ../../../../sphinx/xtp/eqm.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/eqm.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/eqm.rst [ 93%] Generating ../../../../sphinx/xtp/excitoncoupling.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/excitoncoupling.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/excitoncoupling.rst [ 93%] Generating ../../../../sphinx/xtp/gencube.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/gencube.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/gencube.rst [ 94%] Generating ../../../../sphinx/xtp/gpu_benchmark.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/gpu_benchmark.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/gpu_benchmark.rst [ 94%] Generating ../../../../sphinx/xtp/ianalyze.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/ianalyze.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/ianalyze.rst [ 94%] Generating ../../../../sphinx/xtp/iexcitoncl.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/iexcitoncl.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/iexcitoncl.rst [ 94%] Generating ../../../../sphinx/xtp/iqm.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/iqm.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/iqm.rst [ 94%] Generating ../../../../sphinx/xtp/kmclifetime.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/kmclifetime.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/kmclifetime.rst [ 94%] Generating ../../../../sphinx/xtp/kmcmultiple.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/kmcmultiple.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/kmcmultiple.rst [ 94%] Generating ../../../../sphinx/xtp/log2mps.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/log2mps.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/log2mps.rst [ 94%] Generating ../../../../sphinx/xtp/mapchecker.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/mapchecker.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/mapchecker.rst [ 96%] Generating ../../../../sphinx/xtp/mol2orb.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/mol2orb.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/mol2orb.rst [ 96%] Generating ../../../../sphinx/xtp/molpol.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/molpol.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/molpol.rst [ 96%] Generating ../../../../sphinx/xtp/neighborlist.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/neighborlist.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/neighborlist.rst [ 96%] Generating ../../../../sphinx/xtp/orb2fchk.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/orb2fchk.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/orb2fchk.rst [ 96%] Generating ../../../../sphinx/xtp/orb2mol.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/orb2mol.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/orb2mol.rst [ 96%] Generating ../../../../sphinx/xtp/partialcharges.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/partialcharges.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/partialcharges.rst [ 96%] Generating ../../../../sphinx/xtp/qmmm.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/qmmm.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/qmmm.rst [ 96%] Generating ../../../../sphinx/xtp/spectrum.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/spectrum.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/spectrum.rst [ 98%] Generating ../../../../sphinx/xtp/vaverage.rst cd /<>/obj-x86_64-linux-gnu/xtp/share/xtp/xml && /usr/bin/python3 /<>/tools/scripts/extract_xml_metadata.py -i /<>/xtp/share/xtp/xml/vaverage.xml -o /<>/obj-x86_64-linux-gnu/sphinx/xtp/vaverage.rst make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target xtp-xml-rst make -f share/sphinx/CMakeFiles/tools_copy_rst.dir/build.make share/sphinx/CMakeFiles/tools_copy_rst.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/share/sphinx /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/share/sphinx /<>/obj-x86_64-linux-gnu/share/sphinx/CMakeFiles/tools_copy_rst.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f share/sphinx/CMakeFiles/tools_copy_rst.dir/build.make share/sphinx/CMakeFiles/tools_copy_rst.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd 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/<>/obj-x86_64-linux-gnu/csg/scripts/CMakeFiles/csg_inverse_manpage.dir/DependInfo.cmake "--color=" [ 0%] Built target gitversion make -f csg/share/man/CMakeFiles/votca_csg_manpages.dir/build.make csg/share/man/CMakeFiles/votca_csg_manpages.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/share/man /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/share/man /<>/obj-x86_64-linux-gnu/csg/share/man/CMakeFiles/votca_csg_manpages.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/scripts/CMakeFiles/csg_inverse_manpage.dir/build.make csg/scripts/CMakeFiles/csg_inverse_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/scripts/CMakeFiles/csg_inverse_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target csg_inverse_manpage make -f xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/share/man/CMakeFiles/votca_csg_manpages.dir/build.make csg/share/man/CMakeFiles/votca_csg_manpages.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/share/man/CMakeFiles/votca_csg_manpages.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/DependInfo.cmake "--color=" [ 0%] Built target votca_csg_manpages make -f xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/scripts/CMakeFiles/xtp_basisset_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target xtp_basisset_manpage make -f xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/scripts/CMakeFiles/xtp_update_mapfile_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_update_mapfile_manpage make -f xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/build make -f xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/scripts/CMakeFiles/xtp_modify_jobfile_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/DependInfo.cmake "--color=" [ 1%] Built target xtp_modify_jobfile_manpage make -f xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/scripts/CMakeFiles/xtp_autogen_mapping_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/DependInfo.cmake "--color=" [ 1%] Built target xtp_autogen_mapping_manpage make -f csg/scripts/CMakeFiles/csg_call_build.dir/build.make csg/scripts/CMakeFiles/csg_call_build.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/build.make xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/scripts /<>/obj-x86_64-linux-gnu/csg/scripts/CMakeFiles/csg_call_build.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/scripts/CMakeFiles/xtp_qmmm2qm_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_qmmm2qm_manpage make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/scripts/CMakeFiles/csg_call_build.dir/build.make csg/scripts/CMakeFiles/csg_call_build.dir/build make -f csg/scripts/CMakeFiles/csg_inverse_build.dir/build.make csg/scripts/CMakeFiles/csg_inverse_build.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/scripts/CMakeFiles/csg_call_build.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/scripts /<>/obj-x86_64-linux-gnu/csg/scripts/CMakeFiles/csg_inverse_build.dir/DependInfo.cmake "--color=" [ 1%] Built target csg_call_build make -f xtp/scripts/CMakeFiles/xtp_basisset_build.dir/build.make xtp/scripts/CMakeFiles/xtp_basisset_build.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/scripts/CMakeFiles/csg_inverse_build.dir/build.make csg/scripts/CMakeFiles/csg_inverse_build.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_basisset_build.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/scripts/CMakeFiles/csg_inverse_build.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target csg_inverse_build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_basisset_build.dir/build.make xtp/scripts/CMakeFiles/xtp_basisset_build.dir/build make -f xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/build.make xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/scripts/CMakeFiles/xtp_basisset_build.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/DependInfo.cmake "--color=" [ 1%] Built target xtp_basisset_build make -f xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/build.make xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/build.make xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/scripts/CMakeFiles/xtp_update_mapfile_build.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_update_mapfile_build make -f xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/build.make xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/build.make xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/scripts/CMakeFiles/xtp_modify_jobfile_build.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_modify_jobfile_build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/build.make xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/build make -f xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/build.make xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/scripts/CMakeFiles/xtp_autogen_mapping_build.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/scripts /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/scripts /<>/obj-x86_64-linux-gnu/xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/build.make xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/scripts/CMakeFiles/xtp_qmmm2qm_build.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_qmmm2qm_build make -f xtp/share/benchmark/CMakeFiles/xtp_benchmark_build.dir/build.make xtp/share/benchmark/CMakeFiles/xtp_benchmark_build.dir/depend [ 1%] Built target xtp_autogen_mapping_build make -f tools/src/libtools/CMakeFiles/votca_tools.dir/build.make tools/src/libtools/CMakeFiles/votca_tools.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/share/benchmark /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/share/benchmark /<>/obj-x86_64-linux-gnu/xtp/share/benchmark/CMakeFiles/xtp_benchmark_build.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/share/benchmark/CMakeFiles/xtp_benchmark_build.dir/build.make xtp/share/benchmark/CMakeFiles/xtp_benchmark_build.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/libtools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/libtools /<>/obj-x86_64-linux-gnu/tools/src/libtools/CMakeFiles/votca_tools.dir/DependInfo.cmake "--color=" [ 1%] Generating xtp_benchmark.install cd /<>/obj-x86_64-linux-gnu/xtp/share/benchmark && /usr/bin/cmake -DINPUT="xtp_benchmark.in2" -DOUTPUT="xtp_benchmark" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/libtools/CMakeFiles/votca_tools.dir/build.make tools/src/libtools/CMakeFiles/votca_tools.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/libtools/CMakeFiles/votca_tools.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target xtp_benchmark_build [ 7%] Built target votca_tools make -f csg/src/libcsg/CMakeFiles/votca_csg.dir/build.make csg/src/libcsg/CMakeFiles/votca_csg.dir/depend make -f tools/src/tools/CMakeFiles/votca_property.dir/build.make tools/src/tools/CMakeFiles/votca_property.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tools /<>/obj-x86_64-linux-gnu/tools/src/tools/CMakeFiles/votca_property.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tools/CMakeFiles/votca_property.dir/build.make tools/src/tools/CMakeFiles/votca_property.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tools/CMakeFiles/votca_property.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target votca_property make -f tools/src/tests/CMakeFiles/unit_test_calculator.dir/build.make tools/src/tests/CMakeFiles/unit_test_calculator.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/libcsg /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/libcsg /<>/obj-x86_64-linux-gnu/csg/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_calculator.dir/DependInfo.cmake "--color=" Dependencies file "tools/src/tests/CMakeFiles/unit_test_calculator.dir/test_calculator.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_calculator.dir/compiler_depend.internal". make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/libcsg/CMakeFiles/votca_csg.dir/build.make csg/src/libcsg/CMakeFiles/votca_csg.dir/build Consolidate compiler generated dependencies of target unit_test_calculator make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_calculator.dir/build.make tools/src/tests/CMakeFiles/unit_test_calculator.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_calculator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target unit_test_calculator make -f tools/src/tests/CMakeFiles/unit_test_constants.dir/build.make tools/src/tests/CMakeFiles/unit_test_constants.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/libcsg/CMakeFiles/votca_csg.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_constants.dir/DependInfo.cmake "--color=" [ 15%] Built target votca_csg make -f tools/src/tests/CMakeFiles/unit_test_correlate.dir/build.make tools/src/tests/CMakeFiles/unit_test_correlate.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_correlate.dir/DependInfo.cmake "--color=" Dependencies file "tools/src/tests/CMakeFiles/unit_test_constants.dir/test_constants.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_constants.dir/compiler_depend.internal". Dependencies file "tools/src/tests/CMakeFiles/unit_test_correlate.dir/test_correlate.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_correlate.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_constants make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_constants.dir/build.make tools/src/tests/CMakeFiles/unit_test_constants.dir/build Consolidate compiler generated dependencies of target unit_test_correlate make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_correlate.dir/build.make tools/src/tests/CMakeFiles/unit_test_correlate.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_constants.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_correlate.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target unit_test_constants make -f tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/build.make tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/DependInfo.cmake "--color=" [ 16%] Built target unit_test_correlate make -f tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/DependInfo.cmake "--color=" Dependencies file "tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/test_crosscorrelate.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/compiler_depend.internal". Dependencies file "tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/test_cubicspline.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_cubicspline Consolidate compiler generated dependencies of target unit_test_crosscorrelate make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/build.make tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target unit_test_cubicspline make -f tools/src/tests/CMakeFiles/unit_test_datacollection.dir/build.make tools/src/tests/CMakeFiles/unit_test_datacollection.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_datacollection.dir/DependInfo.cmake "--color=" [ 18%] Built target unit_test_crosscorrelate make -f tools/src/tests/CMakeFiles/unit_test_edge_base.dir/build.make tools/src/tests/CMakeFiles/unit_test_edge_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_edge_base.dir/DependInfo.cmake "--color=" Dependencies file "tools/src/tests/CMakeFiles/unit_test_datacollection.dir/test_datacollection.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_datacollection.dir/compiler_depend.internal". Dependencies file "tools/src/tests/CMakeFiles/unit_test_edge_base.dir/test_edge_base.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_edge_base.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_datacollection make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_datacollection.dir/build.make tools/src/tests/CMakeFiles/unit_test_datacollection.dir/build Consolidate compiler generated dependencies of target unit_test_edge_base make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_edge_base.dir/build.make tools/src/tests/CMakeFiles/unit_test_edge_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_edge_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_datacollection.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target unit_test_edge_base make -f tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/build.make tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/depend [ 18%] Built target unit_test_datacollection make -f tools/src/tests/CMakeFiles/unit_test_elements.dir/build.make tools/src/tests/CMakeFiles/unit_test_elements.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_elements.dir/DependInfo.cmake "--color=" Dependencies file "tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/test_edgecontainer.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_edgecontainer make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/build.make tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_elements.dir/test_elements.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_elements.dir/compiler_depend.internal". [ 19%] Built target unit_test_edgecontainer make -f tools/src/tests/CMakeFiles/unit_test_filesystem.dir/build.make tools/src/tests/CMakeFiles/unit_test_filesystem.dir/depend Consolidate compiler generated dependencies of target unit_test_elements make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_elements.dir/build.make tools/src/tests/CMakeFiles/unit_test_elements.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_filesystem.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_elements.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_filesystem.dir/test_filesystem.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_filesystem.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_filesystem make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_filesystem.dir/build.make tools/src/tests/CMakeFiles/unit_test_filesystem.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target unit_test_elements make -f tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/build.make tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/depend make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_filesystem.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/DependInfo.cmake "--color=" [ 20%] Built target unit_test_filesystem make -f tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/depend Dependencies file "tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/test_floatingpointcomparison.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_floatingpointcomparison make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/build.make tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_floatingpointcomparison.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/test_graphalgorithm.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/compiler_depend.internal". [ 22%] Built target unit_test_floatingpointcomparison make -f tools/src/tests/CMakeFiles/unit_test_graph_base.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graph_base.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_graphalgorithm make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_graphalgorithm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_graph_base.dir/test_graph_base.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graph_base.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_graph_base make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graph_base.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_base.dir/build [ 23%] Built target unit_test_graphalgorithm make -f tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_graph_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/test_graph_bf_visitor.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/compiler_depend.internal". [ 23%] Built target unit_test_graph_base make -f tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_graph_bf_visitor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/test_graph_df_visitor.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_graph_df_visitor [ 23%] Built target unit_test_graph_bf_visitor make -f tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/test_graphdistvisitor.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/compiler_depend.internal". [ 23%] Built target unit_test_graph_df_visitor make -f tools/src/tests/CMakeFiles/unit_test_graphnode.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphnode.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphnode.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_graphdistvisitor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_graphnode.dir/test_graphnode.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphnode.dir/compiler_depend.internal". [ 23%] Built target unit_test_graphdistvisitor make -f tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/depend Consolidate compiler generated dependencies of target unit_test_graphnode make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graphnode.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphnode.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_graphnode.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/test_graphvisitor.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/compiler_depend.internal". [ 23%] Built target unit_test_graphnode make -f tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/build.make tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_graphvisitor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/build.make tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/test_histogramnew.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_histogramnew make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/build.make tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/build [ 23%] Built target unit_test_graphvisitor make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_identity.dir/build.make tools/src/tests/CMakeFiles/unit_test_identity.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_identity.dir/DependInfo.cmake "--color=" [ 24%] Built target unit_test_histogramnew make -f tools/src/tests/CMakeFiles/unit_test_linalg.dir/build.make tools/src/tests/CMakeFiles/unit_test_linalg.dir/depend Dependencies file "tools/src/tests/CMakeFiles/unit_test_identity.dir/test_identity.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_identity.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_linalg.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_identity make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_identity.dir/build.make tools/src/tests/CMakeFiles/unit_test_identity.dir/build Dependencies file "tools/src/tests/CMakeFiles/unit_test_linalg.dir/test_linalg.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_linalg.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_linalg make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_identity.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_linalg.dir/build.make tools/src/tests/CMakeFiles/unit_test_linalg.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_linalg.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target unit_test_identity make -f tools/src/tests/CMakeFiles/unit_test_name.dir/build.make tools/src/tests/CMakeFiles/unit_test_name.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_name.dir/DependInfo.cmake "--color=" [ 25%] Built target unit_test_linalg make -f tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/build.make tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/DependInfo.cmake "--color=" Dependencies file "tools/src/tests/CMakeFiles/unit_test_name.dir/test_name.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_name.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_name Dependencies file "tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/test_objectfactory.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/compiler_depend.internal". make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_name.dir/build.make tools/src/tests/CMakeFiles/unit_test_name.dir/build Consolidate compiler generated dependencies of target unit_test_objectfactory make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/build.make tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_name.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target unit_test_name make -f tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/build.make tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/DependInfo.cmake "--color=" [ 28%] Built target unit_test_objectfactory make -f tools/src/tests/CMakeFiles/unit_test_property.dir/build.make tools/src/tests/CMakeFiles/unit_test_property.dir/depend Dependencies file "tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/test_optionshandler.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_property.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_optionshandler make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/build.make tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/build Dependencies file "tools/src/tests/CMakeFiles/unit_test_property.dir/test_property.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_property.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_optionshandler.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_property make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_property.dir/build.make tools/src/tests/CMakeFiles/unit_test_property.dir/build [ 28%] Built target unit_test_optionshandler make -f tools/src/tests/CMakeFiles/unit_test_reducededge.dir/build.make tools/src/tests/CMakeFiles/unit_test_reducededge.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_reducededge.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_property.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_reducededge.dir/test_reducededge.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_reducededge.dir/compiler_depend.internal". [ 28%] Built target unit_test_property make -f tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/build.make tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_reducededge make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_reducededge.dir/build.make tools/src/tests/CMakeFiles/unit_test_reducededge.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_reducededge.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/test_reducedgraph.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/compiler_depend.internal". [ 28%] Built target unit_test_reducededge Consolidate compiler generated dependencies of target unit_test_reducedgraph make -f tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/build.make tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/build.make tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_reducedgraph.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/test_structureparameters.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/compiler_depend.internal". [ 28%] Built target unit_test_reducedgraph make -f tools/src/tests/CMakeFiles/unit_test_table.dir/build.make tools/src/tests/CMakeFiles/unit_test_table.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_table.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_structureparameters make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/build.make tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_table.dir/test_table.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_table.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_table make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_table.dir/build.make tools/src/tests/CMakeFiles/unit_test_table.dir/build [ 28%] Built target unit_test_structureparameters make -f tools/src/tests/CMakeFiles/unit_test_thread.dir/build.make tools/src/tests/CMakeFiles/unit_test_thread.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_table.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_thread.dir/DependInfo.cmake "--color=" [ 29%] Built target unit_test_table make -f tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/build.make tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/depend Dependencies file "tools/src/tests/CMakeFiles/unit_test_thread.dir/test_thread.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_thread.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_thread make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_thread.dir/build.make tools/src/tests/CMakeFiles/unit_test_thread.dir/build Dependencies file "tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/test_tokenizer.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_thread.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_tokenizer make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/build.make tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_tokenizer.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_thread make -f tools/src/tests/CMakeFiles/unit_test_random.dir/build.make tools/src/tests/CMakeFiles/unit_test_random.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_random.dir/DependInfo.cmake "--color=" [ 29%] Built target unit_test_tokenizer make -f tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/DependInfo.cmake "--color=" Dependencies file "tools/src/tests/CMakeFiles/unit_test_random.dir/test_random.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_random.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_random make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/test_akimaspline.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/compiler_depend.internal". make -f tools/src/tests/CMakeFiles/unit_test_random.dir/build.make tools/src/tests/CMakeFiles/unit_test_random.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_random.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_akimaspline make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_random make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_akimaspline.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_linspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_linspline.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_linspline.dir/DependInfo.cmake "--color=" [ 29%] Built target unit_test_akimaspline make -f tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/build.make tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/DependInfo.cmake "--color=" Dependencies file "tools/src/tests/CMakeFiles/unit_test_linspline.dir/test_linspline.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_linspline.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_linspline make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/test_unitconverter.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/compiler_depend.internal". make -f tools/src/tests/CMakeFiles/unit_test_linspline.dir/build.make tools/src/tests/CMakeFiles/unit_test_linspline.dir/build Consolidate compiler generated dependencies of target unit_test_unitconverter make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/build.make tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_linspline.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_unitconverter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target unit_test_linspline make -f tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/build.make tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/DependInfo.cmake "--color=" [ 29%] Built target unit_test_unitconverter make -f tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/build.make tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tests /<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/DependInfo.cmake "--color=" Dependencies file "tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/test_NDimVector.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_NDimVector make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/build.make tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/build Dependencies file "tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/test_eigenio_matrixmarket.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_NDimVector.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_eigenio_matrixmarket make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/build.make tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/build [ 29%] Built target unit_test_NDimVector make -f csg/src/tests/CMakeFiles/unit_test_bead.dir/build.make csg/src/tests/CMakeFiles/unit_test_bead.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tests/CMakeFiles/unit_test_eigenio_matrixmarket.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_bead.dir/DependInfo.cmake "--color=" Dependencies file "csg/src/tests/CMakeFiles/unit_test_bead.dir/test_bead.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_bead.dir/compiler_depend.internal". [ 29%] Built target unit_test_eigenio_matrixmarket make -f csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_bead make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_bead.dir/build.make csg/src/tests/CMakeFiles/unit_test_bead.dir/build Dependencies file "csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/test_beadtriple.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_bead.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_beadtriple make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/build [ 29%] Built target unit_test_bead make -f csg/src/tests/CMakeFiles/unit_test_basebead.dir/build.make csg/src/tests/CMakeFiles/unit_test_basebead.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_basebead.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "csg/src/tests/CMakeFiles/unit_test_basebead.dir/test_basebead.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_basebead.dir/compiler_depend.internal". [ 29%] Built target unit_test_beadtriple Consolidate compiler generated dependencies of target unit_test_basebead make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_basebead.dir/build.make csg/src/tests/CMakeFiles/unit_test_basebead.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_basebead.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_beadmotif_algorithms make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/build [ 29%] Built target unit_test_basebead make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/test_beadmotif_base.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/compiler_depend.internal". [ 31%] Built target unit_test_beadmotif_algorithms make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/depend Consolidate compiler generated dependencies of target unit_test_beadmotif_base make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/test_beadmotif_connector.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/compiler_depend.internal". [ 31%] Built target unit_test_beadmotif_base make -f csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_beadmotif_connector make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/test_beadstructure_base.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/compiler_depend.internal". [ 31%] Built target unit_test_beadmotif_connector Consolidate compiler generated dependencies of target unit_test_beadstructure_base make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/build make -f csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/test_beadstructure_algorithms.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/compiler_depend.internal". [ 32%] Built target unit_test_beadstructure_base make -f csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/build.make csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_beadstructure_algorithms make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/build.make csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/test_csg_topology.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_csg_topology [ 32%] Built target unit_test_beadstructure_algorithms make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/build.make csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/build make -f csg/src/tests/CMakeFiles/unit_test_interaction.dir/build.make csg/src/tests/CMakeFiles/unit_test_interaction.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_interaction.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_csg_topology.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "csg/src/tests/CMakeFiles/unit_test_interaction.dir/test_interaction.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_interaction.dir/compiler_depend.internal". [ 32%] Built target unit_test_csg_topology make -f csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/build.make csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/depend Consolidate compiler generated dependencies of target unit_test_interaction make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/DependInfo.cmake "--color=" make -f csg/src/tests/CMakeFiles/unit_test_interaction.dir/build.make csg/src/tests/CMakeFiles/unit_test_interaction.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_interaction.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/test_lammpsdatareader.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/compiler_depend.internal". [ 33%] Built target unit_test_interaction Consolidate compiler generated dependencies of target unit_test_lammpsdatareader make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/build.make csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/build make -f csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/build.make csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_lammpsdatareader.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/compiler_depend.internal". [ 33%] Built target unit_test_lammpsdatareader make -f csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/build.make csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_lammpsdumpreaderwriter make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/build.make csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/build Dependencies file "csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/test_nblist_3body.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_nblist_3body make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/build.make csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/build [ 33%] Built target unit_test_lammpsdumpreaderwriter make -f csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/build.make csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/DependInfo.cmake "--color=" [ 33%] Built target unit_test_nblist_3body Dependencies file "csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/test_nblistgrid_3body.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/compiler_depend.internal". make -f csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/build.make csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_nblistgrid_3body make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/build.make csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/build Dependencies file "csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/test_boundarycondition.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_boundarycondition make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/build.make csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target unit_test_nblistgrid_3body make -f csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/build.make csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/depend make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_boundarycondition.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/DependInfo.cmake "--color=" [ 35%] Built target unit_test_boundarycondition make -f csg/src/tests/CMakeFiles/unit_test_triplelist.dir/build.make csg/src/tests/CMakeFiles/unit_test_triplelist.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_triplelist.dir/DependInfo.cmake "--color=" Dependencies file "csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/test_pdbreader.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_pdbreader make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/build.make csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/build Dependencies file "csg/src/tests/CMakeFiles/unit_test_triplelist.dir/test_triplelist.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_triplelist.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_triplelist make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_triplelist.dir/build.make csg/src/tests/CMakeFiles/unit_test_triplelist.dir/build [ 35%] Built target unit_test_pdbreader make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_triplelist.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/share/template/CMakeFiles/template_serial.dir/build.make csg/share/template/CMakeFiles/template_serial.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/share/template /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/share/template /<>/obj-x86_64-linux-gnu/csg/share/template/CMakeFiles/template_serial.dir/DependInfo.cmake "--color=" [ 36%] Built target unit_test_triplelist make -f csg/share/template/CMakeFiles/template_threaded.dir/build.make csg/share/template/CMakeFiles/template_threaded.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/share/template /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/share/template /<>/obj-x86_64-linux-gnu/csg/share/template/CMakeFiles/template_threaded.dir/DependInfo.cmake "--color=" Dependencies file "csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/share/template/CMakeFiles/template_serial.dir/compiler_depend.internal". Dependencies file "csg/share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/share/template/CMakeFiles/template_threaded.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target template_serial Consolidate compiler generated dependencies of target template_threaded make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/share/template/CMakeFiles/template_serial.dir/build.make csg/share/template/CMakeFiles/template_serial.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/share/template/CMakeFiles/template_threaded.dir/build.make csg/share/template/CMakeFiles/template_threaded.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/share/template/CMakeFiles/template_serial.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/share/template/CMakeFiles/template_threaded.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target template_serial [ 36%] Built target template_threaded make -f xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build.make xtp/src/libxtp/CMakeFiles/votca_xtp.dir/depend make -f tools/src/tools/CMakeFiles/votca_property_manpage.dir/build.make tools/src/tools/CMakeFiles/votca_property_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tools/src/tools /<>/obj-x86_64-linux-gnu/tools/src/tools/CMakeFiles/votca_property_manpage.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/src/tools/CMakeFiles/votca_property_manpage.dir/build.make tools/src/tools/CMakeFiles/votca_property_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tools/src/tools/CMakeFiles/votca_property_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target votca_property_manpage make -f csg/src/tools/CMakeFiles/csg_reupdate.dir/build.make csg/src/tools/CMakeFiles/csg_reupdate.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_reupdate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_reupdate.dir/build.make csg/src/tools/CMakeFiles/csg_reupdate.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_reupdate.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target csg_reupdate make -f csg/src/tools/CMakeFiles/csg_map.dir/build.make csg/src/tools/CMakeFiles/csg_map.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_map.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_map.dir/build.make csg/src/tools/CMakeFiles/csg_map.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_map.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target csg_map make -f csg/src/tools/CMakeFiles/csg_dump.dir/build.make csg/src/tools/CMakeFiles/csg_dump.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_dump.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/libxtp /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/libxtp /<>/obj-x86_64-linux-gnu/xtp/src/libxtp/CMakeFiles/votca_xtp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dump.dir/build.make csg/src/tools/CMakeFiles/csg_dump.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_dump.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target csg_dump make -f csg/src/tools/CMakeFiles/csg_property.dir/build.make csg/src/tools/CMakeFiles/csg_property.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_property.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_property.dir/build.make csg/src/tools/CMakeFiles/csg_property.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build.make xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_property.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target csg_property make -f csg/src/tools/CMakeFiles/csg_resample.dir/build.make csg/src/tools/CMakeFiles/csg_resample.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_resample.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_resample.dir/build.make csg/src/tools/CMakeFiles/csg_resample.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_resample.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target csg_resample make -f csg/src/tools/CMakeFiles/csg_stat.dir/build.make csg/src/tools/CMakeFiles/csg_stat.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_stat.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_stat.dir/build.make csg/src/tools/CMakeFiles/csg_stat.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_stat.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target csg_stat make -f csg/src/tools/CMakeFiles/csg_fmatch.dir/build.make csg/src/tools/CMakeFiles/csg_fmatch.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_fmatch.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_fmatch.dir/build.make csg/src/tools/CMakeFiles/csg_fmatch.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_fmatch.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/libxtp/CMakeFiles/votca_xtp.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target csg_fmatch make -f csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build.make csg/src/tools/CMakeFiles/csg_gmxtopol.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_gmxtopol.dir/DependInfo.cmake "--color=" [ 62%] Built target votca_xtp make -f csg/src/tools/CMakeFiles/csg_dlptopol.dir/build.make csg/src/tools/CMakeFiles/csg_dlptopol.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_dlptopol.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build.make csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_gmxtopol.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dlptopol.dir/build.make csg/src/tools/CMakeFiles/csg_dlptopol.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_dlptopol.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target csg_gmxtopol make -f csg/src/tools/CMakeFiles/csg_density.dir/build.make csg/src/tools/CMakeFiles/csg_density.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_density.dir/DependInfo.cmake "--color=" [ 64%] Built target csg_dlptopol make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_density.dir/build.make csg/src/tools/CMakeFiles/csg_density.dir/build make -f csg/src/tools/CMakeFiles/csg_imc_solve.dir/build.make csg/src/tools/CMakeFiles/csg_imc_solve.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_imc_solve.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_density.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target csg_density make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_imc_solve.dir/build.make csg/src/tools/CMakeFiles/csg_imc_solve.dir/build make -f csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_imc_solve.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build [ 64%] Built target csg_imc_solve make -f csg/src/csgapps/CMakeFiles/fluctuations.dir/build.make csg/src/csgapps/CMakeFiles/fluctuations.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/fluctuations.dir/DependInfo.cmake "--color=" [ 66%] Built target votca_csg_boltzmann make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/fluctuations.dir/build.make csg/src/csgapps/CMakeFiles/fluctuations.dir/build make -f csg/src/csgapps/CMakeFiles/orientcorr.dir/build.make csg/src/csgapps/CMakeFiles/orientcorr.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/orientcorr.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/fluctuations.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 66%] Built target fluctuations make -f csg/src/csgapps/CMakeFiles/part_dist.dir/build.make csg/src/csgapps/CMakeFiles/part_dist.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/orientcorr.dir/build.make csg/src/csgapps/CMakeFiles/orientcorr.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/part_dist.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/orientcorr.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/part_dist.dir/build.make csg/src/csgapps/CMakeFiles/part_dist.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/part_dist.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 66%] Built target orientcorr make -f csg/src/csgapps/CMakeFiles/partial_rdf.dir/build.make csg/src/csgapps/CMakeFiles/partial_rdf.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/partial_rdf.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/partial_rdf.dir/build.make csg/src/csgapps/CMakeFiles/partial_rdf.dir/build [ 67%] Built target part_dist make -f csg/src/csgapps/CMakeFiles/radii.dir/build.make csg/src/csgapps/CMakeFiles/radii.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/radii.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/partial_rdf.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/radii.dir/build.make csg/src/csgapps/CMakeFiles/radii.dir/build [ 67%] Built target partial_rdf make -f csg/src/csgapps/CMakeFiles/sphericalorder.dir/build.make csg/src/csgapps/CMakeFiles/sphericalorder.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/sphericalorder.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/radii.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/sphericalorder.dir/build.make csg/src/csgapps/CMakeFiles/sphericalorder.dir/build [ 67%] Built target radii make -f csg/src/csgapps/CMakeFiles/traj_force.dir/build.make csg/src/csgapps/CMakeFiles/traj_force.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/traj_force.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/sphericalorder.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 67%] Built target sphericalorder make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/traj_force.dir/build.make csg/src/csgapps/CMakeFiles/traj_force.dir/build make -f xtp/src/tools/CMakeFiles/xtp_map.dir/build.make xtp/src/tools/CMakeFiles/xtp_map.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_map.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/traj_force.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_map.dir/build.make xtp/src/tools/CMakeFiles/xtp_map.dir/build [ 67%] Built target traj_force make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_map.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_run.dir/build.make xtp/src/tools/CMakeFiles/xtp_run.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_run.dir/DependInfo.cmake "--color=" [ 67%] Built target xtp_map make -f xtp/src/tools/CMakeFiles/xtp_tools.dir/build.make xtp/src/tools/CMakeFiles/xtp_tools.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_tools.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_run.dir/build.make xtp/src/tools/CMakeFiles/xtp_run.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_run.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_tools.dir/build.make xtp/src/tools/CMakeFiles/xtp_tools.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_tools.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target xtp_run make -f csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/build.make csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/DependInfo.cmake "--color=" [ 68%] Built target xtp_tools make -f csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/build.make csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tests /<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/DependInfo.cmake "--color=" Dependencies file "csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/test_bondedstatistics.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_bondedstatistics make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/build.make csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/build Dependencies file "csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/test_tabulatedpotential.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_tabulatedpotential make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/build.make csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/build [ 68%] Built target unit_test_bondedstatistics make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_adiis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_adiis.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_adiis.dir/DependInfo.cmake "--color=" [ 68%] Built target unit_test_tabulatedpotential make -f xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/depend Dependencies file "xtp/src/tests/CMakeFiles/unit_test_adiis.dir/test_adiis.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_adiis.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_adiis make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_adiis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_adiis.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_adiis.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target unit_test_adiis make -f xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/test_aobasis.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/test_aomatrix.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_aomatrix make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/build Consolidate compiler generated dependencies of target unit_test_aobasis make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_aomatrix.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_aobasis.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target unit_test_aomatrix make -f xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/DependInfo.cmake "--color=" [ 68%] Built target unit_test_aobasis make -f xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/test_aotransform.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_aotransform make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/test_aomatrix3d.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_aotransform.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_aomatrix3d make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/build [ 68%] Built target unit_test_aotransform make -f xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_aomatrix3d.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target unit_test_aomatrix3d make -f xtp/src/tests/CMakeFiles/unit_test_atom.dir/build.make xtp/src/tests/CMakeFiles/unit_test_atom.dir/depend Dependencies file "xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/test_aopotential.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_atom.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_aopotential make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_atom.dir/test_atom.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_atom.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_aopotential.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_atom make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_atom.dir/build.make xtp/src/tests/CMakeFiles/unit_test_atom.dir/build [ 70%] Built target unit_test_aopotential make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_atom.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/DependInfo.cmake "--color=" [ 71%] Built target unit_test_atom make -f xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/test_qmatom.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/test_polarsegment.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_qmatom make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_qmatom.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_polarsegment make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/build [ 72%] Built target unit_test_qmatom make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_polarsegment.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/DependInfo.cmake "--color=" [ 72%] Built target unit_test_polarsegment make -f xtp/src/tests/CMakeFiles/unit_test_basisset.dir/build.make xtp/src/tests/CMakeFiles/unit_test_basisset.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_basisset.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/test_qmmolecule.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_qmmolecule Dependencies file "xtp/src/tests/CMakeFiles/unit_test_basisset.dir/test_basisset.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_basisset.dir/compiler_depend.internal". make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_qmmolecule.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_basisset make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_basisset.dir/build.make xtp/src/tests/CMakeFiles/unit_test_basisset.dir/build [ 72%] Built target unit_test_qmmolecule make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_basisset.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/DependInfo.cmake "--color=" [ 72%] Built target unit_test_basisset make -f xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/test_bseoperator_btda.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/test_bfgs_trm.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_bseoperator_btda make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/build Consolidate compiler generated dependencies of target unit_test_bfgs_trm make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_bseoperator_btda.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_bfgs_trm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target unit_test_bseoperator_btda make -f xtp/src/tests/CMakeFiles/unit_test_bse.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bse.dir/depend [ 74%] Built target unit_test_bfgs_trm make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bse.dir/DependInfo.cmake "--color=" make -f xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/build.make xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_bse.dir/test_bse.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bse.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/test_convergenceacc.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_bse Consolidate compiler generated dependencies of target unit_test_convergenceacc make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bse.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bse.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/build.make xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_bse.dir/build'. make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_convergenceacc.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target unit_test_convergenceacc [ 74%] Built target unit_test_bse make -f xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/depend make -f xtp/src/tests/CMakeFiles/unit_test_diis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_diis.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_diis.dir/DependInfo.cmake "--color=" cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/test_dftcoupling.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_diis.dir/test_diis.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_diis.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_diis make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_diis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_diis.dir/build Consolidate compiler generated dependencies of target unit_test_dftcoupling make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_diis.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_dftcoupling.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target unit_test_diis make -f xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/DependInfo.cmake "--color=" [ 75%] Built target unit_test_dftcoupling Dependencies file "xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/test_ecpaobasis.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/compiler_depend.internal". make -f xtp/src/tests/CMakeFiles/unit_test_eigen.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eigen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_eigen.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_ecpaobasis Dependencies file "xtp/src/tests/CMakeFiles/unit_test_eigen.dir/test_eigen.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_eigen.dir/compiler_depend.internal". make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/build Consolidate compiler generated dependencies of target unit_test_eigen make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_eigen.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eigen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_ecpaobasis.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_eigen.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target unit_test_ecpaobasis make -f xtp/src/tests/CMakeFiles/unit_test_eris.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eris.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_eris.dir/DependInfo.cmake "--color=" [ 75%] Built target unit_test_eigen make -f xtp/src/tests/CMakeFiles/unit_test_espfit.dir/build.make xtp/src/tests/CMakeFiles/unit_test_espfit.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_espfit.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_eris.dir/test_eris.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_eris.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_espfit.dir/test_espfit.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_espfit.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_eris make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_eris.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eris.dir/build Consolidate compiler generated dependencies of target unit_test_espfit make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_espfit.dir/build.make xtp/src/tests/CMakeFiles/unit_test_espfit.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_eris.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_espfit.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target unit_test_eris make -f xtp/src/tests/CMakeFiles/unit_test_glink.dir/build.make xtp/src/tests/CMakeFiles/unit_test_glink.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_glink.dir/DependInfo.cmake "--color=" [ 75%] Built target unit_test_espfit make -f xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/build.make xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_glink.dir/test_glink.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_glink.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/test_hdf5.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_glink make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_glink.dir/build.make xtp/src/tests/CMakeFiles/unit_test_glink.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_glink.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_hdf5 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/build.make xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/build [ 75%] Built target unit_test_glink make -f xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/build.make xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/DependInfo.cmake "--color=" make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_hdf5.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target unit_test_hdf5 make -f xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/build.make xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/depend Dependencies file "xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/test_cubefile_writer.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/test_densityintegration.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_cubefile_writer Consolidate compiler generated dependencies of target unit_test_densityintegration make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/build.make xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/build.make xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_cubefile_writer.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_densityintegration.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target unit_test_cubefile_writer make -f xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/DependInfo.cmake "--color=" [ 76%] Built target unit_test_densityintegration make -f xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/test_vxc_potential.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/test_vxc_grid.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_vxc_potential make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_vxc_potential.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_vxc_grid make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/build [ 76%] Built target unit_test_vxc_potential make -f xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_vxc_grid.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/test_regular_grid.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/compiler_depend.internal". [ 76%] Built target unit_test_vxc_grid make -f xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_regular_grid make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/test_orbitals.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/compiler_depend.internal". make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_regular_grid.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target unit_test_regular_grid make -f xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/build.make xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_orbitals make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/test_polarsite.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_orbitals.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_polarsite make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/build.make xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/build [ 76%] Built target unit_test_orbitals make -f xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/build.make xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_polarsite.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/test_staticsite.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/compiler_depend.internal". [ 77%] Built target unit_test_polarsite make -f xtp/src/tests/CMakeFiles/unit_test_ppm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_ppm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_ppm.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_staticsite make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/build.make xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_ppm.dir/test_ppm.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_ppm.dir/compiler_depend.internal". make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_staticsite.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target unit_test_staticsite Consolidate compiler generated dependencies of target unit_test_ppm make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_ppm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_ppm.dir/build make -f xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_ppm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/test_qmnblist.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/compiler_depend.internal". [ 77%] Built target unit_test_ppm make -f xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/test_qmpair.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_qmpair make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/build Consolidate compiler generated dependencies of target unit_test_qmnblist make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_qmpair.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_qmnblist.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target unit_test_qmpair [ 79%] Built target unit_test_qmnblist make -f xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/DependInfo.cmake "--color=" make -f xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/test_qmstate.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/test_radial_euler_maclaurin_rule.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_qmstate make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_qmstate.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_radial_euler_maclaurin_rule make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/build [ 79%] Built target unit_test_qmstate make -f xtp/src/tests/CMakeFiles/unit_test_rpa.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rpa.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_rpa.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_radial_euler_maclaurin_rule.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_rpa.dir/test_rpa.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_rpa.dir/compiler_depend.internal". [ 79%] Built target unit_test_radial_euler_maclaurin_rule make -f xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_rpa make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_rpa.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rpa.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/test_rpa_h2p.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_rpa.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_rpa_h2p make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/build [ 80%] Built target unit_test_rpa make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_rpa_h2p.dir/build'. make -f xtp/src/tests/CMakeFiles/unit_test_segment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_segment.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_segment.dir/DependInfo.cmake "--color=" [ 80%] Built target unit_test_rpa_h2p Dependencies file "xtp/src/tests/CMakeFiles/unit_test_segment.dir/test_segment.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_segment.dir/compiler_depend.internal". make -f xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_segment make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_segment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_segment.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/test_aoshell.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_segment.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_aoshell make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/build.make xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/build [ 80%] Built target unit_test_segment make -f xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_aoshell.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/test_sphere_lebedev_rule.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/compiler_depend.internal". [ 80%] Built target unit_test_aoshell make -f xtp/src/tests/CMakeFiles/unit_test_statetracker.dir/build.make xtp/src/tests/CMakeFiles/unit_test_statetracker.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_statetracker.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_sphere_lebedev_rule make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_statetracker.dir/test_statetracker.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_statetracker.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_sphere_lebedev_rule.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_statetracker make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_statetracker.dir/build.make xtp/src/tests/CMakeFiles/unit_test_statetracker.dir/build [ 80%] Built target unit_test_sphere_lebedev_rule make -f xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_statetracker.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/test_symmetric_matrix.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/compiler_depend.internal". [ 81%] Built target unit_test_statetracker Consolidate compiler generated dependencies of target unit_test_symmetric_matrix make -f xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/build.make xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_symmetric_matrix.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/test_threecenter_dft.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/compiler_depend.internal". [ 81%] Built target unit_test_symmetric_matrix make -f xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/build.make xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_threecenter_dft make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/build.make xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/test_threecenter_gwbse.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_threecenter_dft.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_threecenter_gwbse make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/build.make xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/build [ 81%] Built target unit_test_threecenter_dft make -f xtp/src/tests/CMakeFiles/unit_test_topology.dir/build.make xtp/src/tests/CMakeFiles/unit_test_topology.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_topology.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_threecenter_gwbse.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_topology.dir/test_topology.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_topology.dir/compiler_depend.internal". [ 83%] Built target unit_test_threecenter_gwbse make -f xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_topology make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_topology.dir/build.make xtp/src/tests/CMakeFiles/unit_test_topology.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/test_sigma_exact.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_topology.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_sigma_exact make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/build [ 83%] Built target unit_test_topology make -f xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_sigma_exact.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/test_sigma_ppm.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/compiler_depend.internal". [ 83%] Built target unit_test_sigma_exact make -f xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_sigma_ppm make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/test_sigma_cda.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_sigma_ppm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_sigma_cda make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/build.make xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/build [ 83%] Built target unit_test_sigma_ppm make -f xtp/src/tests/CMakeFiles/unit_test_gw.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gw.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gw.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_sigma_cda.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_gw.dir/test_gw.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gw.dir/compiler_depend.internal". [ 84%] Built target unit_test_sigma_cda make -f xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_gw make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_gw.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gw.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/test_bse_operator.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_gw.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_bse_operator make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/build [ 84%] Built target unit_test_gw make -f xtp/src/tests/CMakeFiles/unit_test_davidson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_davidson.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_davidson.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_bse_operator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_davidson.dir/test_davidson.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_davidson.dir/compiler_depend.internal". [ 84%] Built target unit_test_bse_operator make -f xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/build.make xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_davidson make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_davidson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_davidson.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/test_trustregion.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_davidson.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_trustregion make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/build.make xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_trustregion.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target unit_test_davidson make -f xtp/src/tests/CMakeFiles/unit_test_gnode.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gnode.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gnode.dir/DependInfo.cmake "--color=" [ 84%] Built target unit_test_trustregion make -f xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/depend Dependencies file "xtp/src/tests/CMakeFiles/unit_test_gnode.dir/test_gnode.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gnode.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/test_vc2index.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_gnode make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_gnode.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gnode.dir/build Consolidate compiler generated dependencies of target unit_test_vc2index make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_gnode.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/build.make xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_vc2index.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target unit_test_gnode make -f xtp/src/tests/CMakeFiles/unit_test_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_grid.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_grid.dir/DependInfo.cmake "--color=" [ 87%] Built target unit_test_vc2index make -f xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/build.make xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_grid.dir/test_grid.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_grid.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/test_segmentmapper.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_grid make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_grid.dir/build.make xtp/src/tests/CMakeFiles/unit_test_grid.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_grid.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_segmentmapper make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/build.make xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_segmentmapper.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target unit_test_grid make -f xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/DependInfo.cmake "--color=" [ 88%] Built target unit_test_segmentmapper make -f xtp/src/tests/CMakeFiles/unit_test_hist.dir/build.make xtp/src/tests/CMakeFiles/unit_test_hist.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_hist.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_hist.dir/test_hist.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_hist.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/test_eeinteractor.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_hist make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_hist.dir/build.make xtp/src/tests/CMakeFiles/unit_test_hist.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_hist.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target unit_test_hist make -f xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_eeinteractor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/build.make xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/test_qmfragment.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_qmfragment make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/build.make xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_eeinteractor.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_qmfragment.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target unit_test_eeinteractor make -f xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/build.make xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/DependInfo.cmake "--color=" [ 88%] Built target unit_test_qmfragment make -f xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/test_dipoledipoleinteraction.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_dipoledipoleinteraction make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_dipoledipoleinteraction.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/test_jobtopology.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/compiler_depend.internal". [ 88%] Built target unit_test_dipoledipoleinteraction make -f xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/test_populationanalysis.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_jobtopology make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/build.make xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/build Consolidate compiler generated dependencies of target unit_test_populationanalysis make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/build.make xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_jobtopology.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_populationanalysis.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target unit_test_jobtopology make -f xtp/src/tests/CMakeFiles/unit_test_orca.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orca.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_orca.dir/DependInfo.cmake "--color=" [ 88%] Built target unit_test_populationanalysis make -f xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_orca.dir/test_orca.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_orca.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/test_dftengine.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_orca make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_orca.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orca.dir/build Consolidate compiler generated dependencies of target unit_test_dftengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_orca.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_dftengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target unit_test_orca make -f xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/depend [ 88%] Built target unit_test_dftengine make -f xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/test_bsecoupling.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/test_rate_engine.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_bsecoupling make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/build.make xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/build Consolidate compiler generated dependencies of target unit_test_rate_engine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_bsecoupling.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_rate_engine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target unit_test_bsecoupling make -f xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/depend [ 89%] Built target unit_test_rate_engine make -f xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/test_DeltaQ_filter.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_DeltaQ_filter make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/test_oscillatorstrength_filter.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_DeltaQ_filter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target unit_test_DeltaQ_filter make -f xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/test_localisation_filter.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_oscillatorstrength_filter make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/build Consolidate compiler generated dependencies of target unit_test_localisation_filter make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_oscillatorstrength_filter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_localisation_filter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target unit_test_localisation_filter make -f xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/DependInfo.cmake "--color=" [ 89%] Built target unit_test_oscillatorstrength_filter make -f xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/test_density_filter.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/compiler_depend.internal". Dependencies file "xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/test_overlap_filter.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_density_filter make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/build Consolidate compiler generated dependencies of target unit_test_overlap_filter make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_density_filter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_overlap_filter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target unit_test_density_filter make -f xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/DependInfo.cmake "--color=" [ 89%] Built target unit_test_overlap_filter make -f xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/build.make xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/test_newton_rapson.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/compiler_depend.internal". cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_newton_rapson make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/test_indexparser.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_newton_rapson.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_indexparser make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/build.make xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_indexparser.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target unit_test_newton_rapson make -f xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/DependInfo.cmake "--color=" [ 89%] Built target unit_test_indexparser Dependencies file "xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/test_orbreorder.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/compiler_depend.internal". make -f xtp/src/tests/CMakeFiles/unit_test_molden.dir/build.make xtp/src/tests/CMakeFiles/unit_test_molden.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_molden.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_orbreorder Dependencies file "xtp/src/tests/CMakeFiles/unit_test_molden.dir/test_molden.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_molden.dir/compiler_depend.internal". make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/build.make xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_orbreorder.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_molden make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_molden.dir/build.make xtp/src/tests/CMakeFiles/unit_test_molden.dir/build [ 90%] Built target unit_test_orbreorder make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_molden.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/DependInfo.cmake "--color=" [ 90%] Built target unit_test_molden make -f xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/build.make xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/test_gaussianwriter.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_gaussianwriter make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/test_incrementalfockbuilder.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_incrementalfockbuilder make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_gaussianwriter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/build.make xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_incrementalfockbuilder.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 90%] Built target unit_test_gaussianwriter make -f xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/build.make xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/DependInfo.cmake "--color=" [ 90%] Built target unit_test_incrementalfockbuilder make -f xtp/src/tests/CMakeFiles/unit_test_anderson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_anderson.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_anderson.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/test_parallelism.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_parallelism Dependencies file "xtp/src/tests/CMakeFiles/unit_test_anderson.dir/test_anderson.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_anderson.dir/compiler_depend.internal". make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/build.make xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/build Consolidate compiler generated dependencies of target unit_test_anderson make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_parallelism.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_anderson.dir/build.make xtp/src/tests/CMakeFiles/unit_test_anderson.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_anderson.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target unit_test_parallelism make -f xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/DependInfo.cmake "--color=" [ 93%] Built target unit_test_anderson make -f xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/build.make xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/DependInfo.cmake "--color=" Dependencies file "xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/test_gaussian_quadratures.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target unit_test_gaussian_quadratures make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/build.make xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/test_pmlocalization.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_gaussian_quadratures.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_pmlocalization make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/build.make xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/build [ 93%] Built target unit_test_gaussian_quadratures make -f xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_pmlocalization.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/test_activedensitymatrix.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/compiler_depend.internal". [ 93%] Built target unit_test_pmlocalization make -f xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_activedensitymatrix make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/build.make xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/test_activedftengine.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_activedensitymatrix.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_activedftengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/build [ 94%] Built target unit_test_activedensitymatrix make -f xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_activedftengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/test_truncdftengine.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/compiler_depend.internal". [ 94%] Built target unit_test_activedftengine make -f xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/build.make xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_truncdftengine make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/build.make xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/build Dependencies file "xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/test_diabatization.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/compiler_depend.internal". make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_truncdftengine.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target unit_test_diabatization make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/build.make xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/build [ 94%] Built target unit_test_truncdftengine make -f xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/build.make xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tests /<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_diabatization.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Dependencies file "xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/test_transition_densities.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/compiler_depend.internal". [ 94%] Built target unit_test_diabatization make -f xtp/src/tools/CMakeFiles/xtp_parallel.dir/build.make xtp/src/tools/CMakeFiles/xtp_parallel.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_parallel.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target unit_test_transition_densities make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/build.make xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_parallel.dir/build.make xtp/src/tools/CMakeFiles/xtp_parallel.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tests/CMakeFiles/unit_test_transition_densities.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_parallel.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target unit_test_transition_densities make -f csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/depend [ 94%] Built target xtp_parallel make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/DependInfo.cmake "--color=" make -f csg/src/tools/CMakeFiles/csg_map_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_map_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_map_manpage.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_reupdate_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_map_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_map_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_map_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target csg_reupdate_manpage make -f csg/src/tools/CMakeFiles/csg_dump_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_dump_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_dump_manpage.dir/DependInfo.cmake "--color=" [ 94%] Built target csg_map_manpage make -f csg/src/tools/CMakeFiles/csg_property_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_property_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_property_manpage.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dump_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_dump_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_dump_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_property_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_property_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_property_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target csg_dump_manpage make -f csg/src/tools/CMakeFiles/csg_resample_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_resample_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_resample_manpage.dir/DependInfo.cmake "--color=" [ 94%] Built target csg_property_manpage make -f csg/src/tools/CMakeFiles/csg_stat_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_stat_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_stat_manpage.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_resample_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_resample_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_resample_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_stat_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_stat_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_stat_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target csg_resample_manpage make -f csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/DependInfo.cmake "--color=" [ 96%] Built target csg_stat_manpage make -f csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_fmatch_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target csg_fmatch_manpage make -f csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/DependInfo.cmake "--color=" [ 96%] Built target csg_gmxtopol_manpage make -f csg/src/tools/CMakeFiles/csg_density_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_density_manpage.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_density_manpage.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target csg_dlptopol_manpage make -f csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_density_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_density_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_density_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/tools /<>/obj-x86_64-linux-gnu/csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/DependInfo.cmake "--color=" [ 96%] Built target csg_density_manpage make -f csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/DependInfo.cmake "--color=" [ 96%] Built target csg_imc_solve_manpage make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build make -f csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/build.make csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/build.make csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/fluctuations_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target csg_boltzmann make -f csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/build.make csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/DependInfo.cmake "--color=" [ 97%] Built target fluctuations_manpage make -f csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/build.make csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/DependInfo.cmake "--color=" make -f csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/build.make csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/orientcorr_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target orientcorr_manpage make -f csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/build.make csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/build.make csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/part_dist_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target part_dist_manpage make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/build.make csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/build make -f csg/src/csgapps/CMakeFiles/radii_manpage.dir/build.make csg/src/csgapps/CMakeFiles/radii_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/partial_rdf_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/radii_manpage.dir/DependInfo.cmake "--color=" [ 97%] Built target partial_rdf_manpage make -f csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/build.make csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/radii_manpage.dir/build.make csg/src/csgapps/CMakeFiles/radii_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/radii_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/build.make csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/sphericalorder_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target radii_manpage make -f csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/build.make csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csgapps /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csgapps /<>/obj-x86_64-linux-gnu/csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/DependInfo.cmake "--color=" [ 98%] Built target sphericalorder_manpage make -f xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/build.make csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csgapps/CMakeFiles/traj_force_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_map_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target traj_force_manpage make -f xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/DependInfo.cmake "--color=" [100%] Built target xtp_map_manpage make -f xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_run_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_tools_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target xtp_run_manpage make -f xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/xtp/src/tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/xtp/src/tools /<>/obj-x86_64-linux-gnu/xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/DependInfo.cmake "--color=" [100%] Built target xtp_tools_manpage make -f csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/build.make xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'xtp/src/tools/CMakeFiles/xtp_parallel_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build.make csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target xtp_parallel_manpage [100%] Built target csg_boltzmann_manpage make -f CMakeFiles/manpages.dir/build.make CMakeFiles/manpages.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/manpages.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/manpages.dir/build.make CMakeFiles/manpages.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/manpages.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target manpages make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j2 test ARGS\+=--verbose ARGS\+=-j2 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j2 UpdateCTestConfiguration from :/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /<>/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 103 Start 103: integration_Run_gmx_grompp 103: Test command: /usr/bin/gmx_d "grompp" 103: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 103: Test timeout computed to be: 1500 test 55 Start 55: integration_Run_gmx_grompp_re 55: Test command: /usr/bin/gmx_d "grompp" 55: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_reupdate_gmx 55: Test timeout computed to be: 1500 55: :-) GROMACS - gmx grompp, 2024.2-Debian_2024.2_1 (double precision) (-: 55: 103: :-) GROMACS - gmx grompp, 2024.2-Debian_2024.2_1 (double precision) (-: 103: 103: Executable: /usr/bin/gmx_d 55: Executable: /usr/bin/gmx_d 103: Data prefix: /usr 55: Data prefix: /usr 103: Working dir: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 103: Command line: 103: gmx_d grompp 103: 55: Working dir: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_reupdate_gmx 55: Command line: 55: gmx_d grompp 55: 55: Ignoring obsolete mdp entry 'title' 55: 55: NOTE 1 [file grompp.mdp]: 55: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note 103: Ignoring obsolete mdp entry 'title' 103: 103: NOTE 1 [file grompp.mdp]: 103: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note 103: that with the Verlet scheme, nstlist has no effect on the accuracy of 103: your simulation. 103: 103: 103: NOTE 2 [file grompp.mdp]: 103: You have set rlist larger than the interaction cut-off, but you also have 103: verlet-buffer-tolerance > 0. Will set rlist using 103: verlet-buffer-tolerance. 103: 55: that with the Verlet scheme, nstlist has no effect on the accuracy of 55: your simulation. 55: 55: 55: NOTE 2 [file grompp.mdp]: 55: You have set rlist larger than the interaction cut-off, but you also have 55: verlet-buffer-tolerance > 0. Will set rlist using 55: verlet-buffer-tolerance. 55: 55: Number of degrees of freedom in T-Coupling group System is 645.00 55: 55: There were 2 NOTEs 55: 55: GROMACS reminds you: "Roses are read // Violets are blue // Unexpected '}' on line 32" (Anonymous) 55: 55: Setting the LD random seed to 955758508 55: 55: Generated 1 of the 1 non-bonded parameter combinations 55: 55: Excluding 1 bonded neighbours molecule type 'SOL' 55: Analysing residue names: 55: There are: 216 Water residues 55: 55: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 55: 55: Calculated rlist for 1x1 atom pair-list as 0.900 nm, buffer size 0.000 nm 55: 55: Set rlist, assuming 4x4 atom pair-list, to 0.900 nm, buffer size 0.000 nm 55: 55: Note that mdrun will redetermine rlist based on the actual pair-list setup 55: 55: This run will generate roughly 0 Mb of data 1/249 Test #55: integration_Run_gmx_grompp_re ...................... Passed 0.51 sec test 123 Start 123: integration_Run_gmx_grompp_ppy 123: Test command: /usr/bin/gmx_d "grompp" 123: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_boltzmann_ppy 123: Test timeout computed to be: 1500 123: :-) GROMACS - gmx grompp, 2024.2-Debian_2024.2_1 (double precision) (-: 123: 123: Executable: /usr/bin/gmx_d 123: Data prefix: /usr 123: Working dir: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_boltzmann_ppy 123: Command line: 123: gmx_d grompp 123: 123: 123: NOTE 1 [file grompp.mdp]: 123: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note 123: that with the Verlet scheme, nstlist has no effect on the accuracy of 123: your simulation. 123: 123: 123: NOTE 2 [file grompp.mdp]: 123: You have set rlist larger than the interaction cut-off, but you also have 123: verlet-buffer-tolerance > 0. Will set rlist using 123: verlet-buffer-tolerance. 123: 123: Generating 1-4 interactions: fudge = 0.5 123: 123: NOTE 3 [file topol.top, line 484]: 123: The bond in molecule-type Protein between atoms 1 N and 2 HN has an 123: estimated oscillational period of 1.0e-02 ps, which is less than 10 times 123: the time step of 2.0e-03 ps. 123: Maybe you forgot to change the constraints mdp option. 123: 123: Number of degrees of freedom in T-Coupling group System is 243.00 123: 123: There were 3 NOTEs 123: 123: GROMACS reminds you: "Roses are read // Violets are blue // Unexpected '}' on line 32" (Anonymous) 123: 123: Setting the LD random seed to 2144841551 123: 123: Generated 28 of the 28 non-bonded parameter combinations 123: 123: Generated 28 of the 28 1-4 parameter combinations 123: 123: Excluding 3 bonded neighbours molecule type 'Protein' 123: Analysing residue names: 123: There are: 10 Other residues 123: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 123: 123: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 123: 123: Calculated rlist for 1x1 atom pair-list as 0.900 nm, buffer size 0.000 nm 123: 123: Set rlist, assuming 4x4 atom pair-list, to 0.900 nm, buffer size 0.000 nm 123: 123: Note that mdrun will redetermine rlist based on the actual pair-list setup 123: 123: This run will generate roughly 0 Mb of data 2/249 Test #123: integration_Run_gmx_grompp_ppy ..................... Passed 0.23 sec test 126 Start 126: integration_Run_gmx_grompp_mma 126: Test command: /usr/bin/gmx_d "grompp" 126: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_boltzmann_mma 126: Test timeout computed to be: 1500 126: :-) GROMACS - gmx grompp, 2024.2-Debian_2024.2_1 (double precision) (-: 126: 126: Executable: /usr/bin/gmx_d 126: Data prefix: /usr 126: Working dir: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_boltzmann_mma 126: Command line: 126: gmx_d grompp 126: 126: Ignoring obsolete mdp entry 'andersen_seed' 126: Ignoring obsolete mdp entry 'optimize_fft' 126: Replacing old mdp entry 'nstxtcout' by 'nstxout-compressed' 126: Replacing old mdp entry 'xtc-precision' by 'compressed-x-precision' 126: Generating 1-4 interactions: fudge = 0.5 126: 126: NOTE 1 [file topol.top, line 522]: 126: The bond in molecule-type 3-MMA between atoms 17 C2 and 18 H4 has an 126: estimated oscillational period of 1.2e-02 ps, which is less than 10 times 126: the time step of 2.0e-03 ps. 126: Maybe you forgot to change the constraints mdp option. 126: 126: Number of degrees of freedom in T-Coupling group System is 156.00 126: 126: NOTE 2 [file grompp.mdp]: 126: You are using a plain Coulomb cut-off, which might produce artifacts. 126: You might want to consider using PME electrostatics. 126: 126: 126: 126: NOTE 3 [file grompp.mdp]: 126: This run will generate roughly 3755 Mb of data 126: 126: 126: NOTE 4 [file grompp.mdp]: 126: COM removal frequency is set to (705032704). 126: Other settings require a global communication frequency of 100. 126: Note that this will require additional global communication steps, 126: which will reduce performance when using multiple ranks. 126: Consider setting nstcomm to a multiple of 100. 126: 126: 126: There were 4 NOTEs 126: 126: GROMACS reminds you: "Roses are read // Violets are blue // Unexpected '}' on line 32" (Anonymous) 126: 126: Setting the LD random seed to -642056201 126: 126: Generated 21 of the 21 non-bonded parameter combinations 126: 126: Generated 21 of the 21 1-4 parameter combinations 126: 126: Excluding 3 bonded neighbours molecule type '3-MMA' 126: 126: Setting gen_seed to -285230342 126: 126: Velocities were taken from a Maxwell distribution at 600 K 126: Analysing residue names: 126: There are: 3 Other residues 126: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 126: 126: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 600 K 126: 126: Calculated rlist for 1x1 atom pair-list as 1.052 nm, buffer size 0.152 nm 126: 126: Set rlist, assuming 4x4 atom pair-list, to 1.016 nm, buffer size 0.116 nm 126: 126: Note that mdrun will redetermine rlist based on the actual pair-list setup 3/249 Test #126: integration_Run_gmx_grompp_mma ..................... Passed 0.08 sec test 50 Start 50: integration_Run_csg_reupdate 50: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_reupdate "--gentable" "true" "--options" "/<>/csg/src/tools/references/spce/settings_re.xml" 50: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_reupdate 50: Test timeout computed to be: 1500 50: Writing CG parameters and potential(s) 50: Writing file: CG-CG.pot.new 50: CG-CG potential's extrapolated core is attractive! 50: Artifically enforcing repulsive core. 50: 4/249 Test #50: integration_Run_csg_reupdate ....................... Passed 0.02 sec test 52 Start 52: integration_Run_csg_reupdate2 52: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_reupdate "--options" "/<>/csg/src/tools/references/spce/settings_re.xml" "--top" "/<>/csg/src/tools/references/spce/topol_cg.xml" "--trj" "/<>/csg/src/tools/references/spce/frame_cg.dump" "--hessian-check" "no" 52: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_reupdate2 52: Test timeout computed to be: 1500 52: I have 216 beads in 216 molecules 52: Reading frame, timestep 0 52: We have CG-CG CG potential 52: Between beads CG-CG 52: With Function form cbspl 52: And 4 parameters to optimize 52: Potential range: 52: rmin = 0.26 [nm] 52: rcutoff = 0.3 [nm] 52: Total number of parameters to optimize: 4 52: Updating parameters 52: ****************** WARNING ***************** 52: Hessian H NOT a positive definite! 52: This can be a result of poor initial guess or ill-suited CG potential settings or poor CG sampling. 52: ******************************************** 52: 52: However, you want to proceed despite non-positive definite H. 52: Non-positive H does not gurantee relative entropy iterations to converge to minimum. 52: You can turn on Hessian check by setting command line option --hessian-check=true. 52: In this case, alternative update option is steepest descent. 52: AA Ensemble Avg Energy :: 0.328298 52: CG Ensemble Avg Energy :: 5.32913 52: Writing CG parameters and potential(s) 52: Writing file: CG-CG.pot.new 52: CG-CG potential's extrapolated core is attractive! 52: Artifically enforcing repulsive core. 52: 52: Writing file: CG-CG.param.new 52: CG-CG potential's extrapolated core is attractive! 52: Artifically enforcing repulsive core. 52: 52: Finished RE update! 5/249 Test #52: integration_Run_csg_reupdate2 ...................... Passed 0.03 sec test 56 Start 56: integration_Run_csg_reupdate_gmx 56: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_reupdate "--options" "/<>/csg/src/tools/references/spce/settings_re.xml" "--top" "topol.tpr" "--trj" "conf.gro" "--hessian-check" "no" 56: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_reupdate_gmx 56: Test timeout computed to be: 1500 56: Reading file topol.tpr, VERSION 2024.2-Debian_2024.2_1 (double precision) 56: I have 216 beads in 216 molecules 56: We have CG-CG CG potential 56: Between beads CG-CG 56: With Function form cbspl 56: And 4 parameters to optimize 56: Potential range: 56: rmin = 0.26 [nm] 56: rcutoff = 0.3 [nm] 56: Total number of parameters to optimize: 4 56: Updating parameters 56: ****************** WARNING ***************** 56: Hessian H NOT a positive definite! 56: This can be a result of poor initial guess or ill-suited CG potential settings or poor CG sampling. 56: ******************************************** 56: 56: However, you want to proceed despite non-positive definite H. 56: Non-positive H does not gurantee relative entropy iterations to converge to minimum. 56: You can turn on Hessian check by setting command line option --hessian-check=true. 56: In this case, alternative update option is steepest descent. 56: AA Ensemble Avg Energy :: 0.328298 56: CG Ensemble Avg Energy :: 5.31427 56: Writing CG parameters and potential(s) 56: Writing file: CG-CG.pot.new 56: CG-CG potential's extrapolated core is attractive! 56: Artifically enforcing repulsive core. 56: 56: Writing file: CG-CG.param.new 56: CG-CG potential's extrapolated core is attractive! 56: Artifically enforcing repulsive core. 56: 56: Finished RE update! 6/249 Test #56: integration_Run_csg_reupdate_gmx ................... Passed 0.04 sec test 59 Start 59: integration_Run_csg_fmatch 59: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_fmatch "--top" "/<>/csg/src/tools/references/spce/topol.xml" "--trj" "/<>/csg/src/tools/references/spce/frame.dump" "--options" "/<>/csg/src/tools/references/spce/settings_fmatch.xml" "--cg" "/<>/csg/src/tools/references/spce/mapping.xml" 59: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_fmatch 59: Test timeout computed to be: 1500 59: I have 648 beads in 216 molecules 59: I have 216 beads in 216 molecules for the coarsegraining 59: Reading frame, timestep 0 59: a: 0.37 ,sigma: 1 ,gamma: 0.12 59: Number of spline functions for the interaction CG-CG:13 59: 59: You are using VOTCA! 59: 59: hey, somebody wants to forcematch! 59: 59: Using constrained Least Squares! 59: 59: This should be a number: -19.5494 59: 59: Block No1 done! 59: Updating file: CG-CG.force 59: 59: We are done, thank you very much! 7/249 Test #59: integration_Run_csg_fmatch ......................... Passed 0.04 sec test 61 Start 61: integration_Run_csg_fmatch_3body 61: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_fmatch "--top" "/<>/csg/src/tools/references/spce/topol.xml" "--trj" "/<>/csg/src/tools/references/spce/frame.dump" "--options" "/<>/csg/src/tools/references/spce/settings_fmatch_3body.xml" "--cg" "/<>/csg/src/tools/references/spce/mapping.xml" 61: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_fmatch_3body 61: Test timeout computed to be: 1500 61: I have 648 beads in 216 molecules 61: I have 216 beads in 216 molecules for the coarsegraining 61: Reading frame, timestep 0 61: a: 0.37 ,sigma: 1 ,gamma: 0.12 61: Number of spline functions for the interaction CG-CG:48 61: a: 0.37 ,sigma: 1 ,gamma: 0.08 61: Number of spline functions for the interaction CG-CG-CG:36 61: 61: You are using VOTCA! 61: 61: hey, somebody wants to forcematch! 61: 61: Using constrained Least Squares! 61: 61: This should be a number: -0.0413191 61: This should be a number: -0.854333 61: 61: Block No1 done! 61: Updating file: CG-CG.force 61: Updating files: CG-CG-CG.pot and: CG-CG-CG.force 61: 61: We are done, thank you very much! 8/249 Test #61: integration_Run_csg_fmatch_3body ................... Passed 0.63 sec test 65 Start 65: integration_Run_csg_map 65: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_map "--top" "/<>/csg/src/tools/references/spce/topol.xml" "--trj" "/<>/csg/src/tools/references/spce/frame.dump" "--out" "frame.dump" "--no-map" "--force" 65: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_map 65: Test timeout computed to be: 1500 65: I have 648 beads in 216 molecules 65: Reading frame, timestep 0 65: writing coarse-grained trajectory to frame.dump 9/249 Test #65: integration_Run_csg_map ............................ Passed 0.05 sec test 67 Start 67: integration_Run_csg_map_gro 67: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_map "--top" "/<>/csg/src/tools/references/spce/topol.xml" "--trj" "/<>/csg/src/tools/references/spce/frame.dump" "--cg" "/<>/csg/src/tools/references/spce/mapping.xml" "--out" "conf_cg.gro" "--nframes" "1" 67: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_map_gro 67: Test timeout computed to be: 1500 67: I have 648 beads in 216 molecules 67: I have 216 beads in 216 molecules for the coarsegraining 67: Reading frame, timestep 0 67: writing coarse-grained trajectory to conf_cg.gro 10/249 Test #67: integration_Run_csg_map_gro ........................ Passed 0.04 sec test 69 Start 69: integration_Run_csg_stat 69: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_stat "--top" "/<>/csg/src/tools/references/spce/topol.xml" "--trj" "/<>/csg/src/tools/references/spce/frame.dump" "--options" "/<>/csg/src/tools/references/spce/settings_rdf.xml" "--cg" "/<>/csg/src/tools/references/spce/mapping.xml" 69: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat 69: Test timeout computed to be: 1500 69: begin to calculate distribution functions 69: # of bonded interactions: 0 69: # of non-bonded interactions: 1 69: I have 648 beads in 216 molecules 69: I have 216 beads in 216 molecules for the coarsegraining 69: Reading frame, timestep 0 69: 69: written CG-CG.dist.new 69: written CG-CG.force.new 11/249 Test #69: integration_Run_csg_stat ........................... Passed 0.04 sec test 72 Start 72: integration_Run_csg_stat_angular 72: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_stat "--top" "/<>/csg/src/tools/references/spce/topol.xml" "--trj" "/<>/csg/src/tools/references/spce/frame.dump" "--options" "/<>/csg/src/tools/references/spce/settings_angular.xml" "--cg" "/<>/csg/src/tools/references/spce/mapping.xml" 72: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat_angular 72: Test timeout computed to be: 1500 103: Generating 1-4 interactions: fudge = 0.5 72: begin to calculate distribution functions 72: # of bonded interactions: 0 72: # of non-bonded interactions: 1 72: I have 648 beads in 216 molecules 72: I have 216 beads in 216 molecules for the coarsegraining 72: Reading frame, timestep 0 72: 72: written CG-CG-CG.dist.new 12/249 Test #72: integration_Run_csg_stat_angular ................... Passed 0.06 sec test 74 Start 74: integration_Run_csg_stat-imc 74: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_stat "--top" "/<>/csg/src/tools/references/spce/topol.xml" "--trj" "/<>/csg/src/tools/references/spce/frame.dump" "--do-imc" "--options" "/<>/csg/src/tools/references/spce/settings_imc.xml" "--cg" "/<>/csg/src/tools/references/spce/mapping.xml" 74: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat-imc 74: Test timeout computed to be: 1500 74: begin to calculate inverse monte carlo parameters 74: # of bonded interactions: 0 74: # of non-bonded interactions: 1 74: I have 648 beads in 216 molecules 74: I have 216 beads in 216 molecules for the coarsegraining 74: Reading frame, timestep 0 74: 74: written CG-CG.dist.new 74: written CG-CG.imc 74: written CG-CG.gmc 74: written CG-CG.idx 13/249 Test #74: integration_Run_csg_stat-imc ....................... Passed 0.03 sec test 79 Start 79: integration_Run_csg_imc_solve 79: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_imc_solve "-i" "/<>/csg/src/tools/references/spce/imc/CG-CG.imc" "-g" "/<>/csg/src/tools/references/spce/imc/CG-CG.gmc" "-n" "/<>/csg/src/tools/references/spce/imc/CG-CG.idx" 79: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_imc_solve 79: Test timeout computed to be: 1500 14/249 Test #79: integration_Run_csg_imc_solve ...................... Passed 0.05 sec test 81 Start 81: integration_Run_csg_imc_solve_reg 81: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_imc_solve "-r" "1000" "-i" "/<>/csg/src/tools/references/LJ1-LJ2/group_1.imc" "-g" "/<>/csg/src/tools/references/LJ1-LJ2/group_1.gmc" "-n" "/<>/csg/src/tools/references/LJ1-LJ2/group_1.idx" 81: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_imc_solve_reg 81: Test timeout computed to be: 1500 15/249 Test #81: integration_Run_csg_imc_solve_reg .................. Passed 0.06 sec test 85 Start 85: integration_Run_csg_stat_imc_multi 85: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_stat "--top" "/<>/csg/src/tools/references/LJ1-LJ2/smaller_system/topol.xml" "--trj" "/<>/csg/src/tools/references/LJ1-LJ2/smaller_system/traj.gro" "--do-imc" "--options" "/<>/csg/src/tools/references/LJ1-LJ2/smaller_system/settings_imc.xml" 85: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat_imc_multi 85: Test timeout computed to be: 1500 85: begin to calculate inverse monte carlo parameters 85: # of bonded interactions: 0 85: # of non-bonded interactions: 3 85: I have 200 beads in 200 molecules 85: 85: written LJ1-LJ1.dist.new 85: written LJ1-LJ2.dist.new 85: written LJ2-LJ2.dist.new 85: written all.imc 85: written all.gmc 85: written all.idx 16/249 Test #85: integration_Run_csg_stat_imc_multi ................. Passed 0.04 sec test 89 Start 89: integration_Run_csg_resample_akima 89: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_resample "--in" "/<>/csg/src/tools/references/csg_resample/table_in" "--out" "table_akima" "--type" "akima" "--grid" "0:0.1:3" 89: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_resample 89: Test timeout computed to be: 1500 17/249 Test #89: integration_Run_csg_resample_akima ................. Passed 0.02 sec test 91 Start 91: integration_Run_csg_resample_cubic 91: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_resample "--in" "/<>/csg/src/tools/references/csg_resample/table_in" "--out" "table_cubic" "--type" "cubic" "--grid" "0:0.1:3" 91: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_resample 91: Test timeout computed to be: 1500 18/249 Test #91: integration_Run_csg_resample_cubic ................. Passed 0.02 sec test 93 Start 93: integration_Run_csg_resample_linear 93: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_resample "--in" "/<>/csg/src/tools/references/csg_resample/table_in" "--out" "table_linear" "--type" "linear" "--grid" "0:0.1:3" 93: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_resample 93: Test timeout computed to be: 1500 19/249 Test #93: integration_Run_csg_resample_linear ................ Passed 0.03 sec test 95 Start 95: integration_Run_csg_resample_cubicfit 95: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_resample "--in" "/<>/csg/src/tools/references/csg_resample/table_in" "--out" "table_cubicfit" "--type" "cubic" "--grid" "0:1:9" "--fitgrid" "0:2:9" 95: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_resample 95: Test timeout computed to be: 1500 95: doing cubic fit 0:2:9 20/249 Test #95: integration_Run_csg_resample_cubicfit .............. Passed 0.04 sec test 97 Start 97: integration_Run_csg_dump 97: Test command: /usr/bin/bash "-c" "/<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dump --top /<>/csg/src/tools/references/methanol-water//topol_cg.xml > csg_dump.out" 97: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_dump 97: Test timeout computed to be: 1500 21/249 Test #97: integration_Run_csg_dump ........................... Passed 0.05 sec test 99 Start 99: integration_Run_csg_dump_gro 99: Test command: /usr/bin/bash "-c" "/<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dump --top /<>/csg/src/tools/references/spce/3mols/conf.gro > csg_dump_gro.out" 99: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_dump_gro 99: Test timeout computed to be: 1500 22/249 Test #99: integration_Run_csg_dump_gro ....................... Passed 0.04 sec test 101 Start 101: integration_Run_csg_dump_data 101: Test command: /usr/bin/bash "-c" "/<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dump --top /<>/csg/src/tools/references/spce/3mols_cg/spce.data > csg_dump_data.out" 101: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_dump_data 101: Test timeout computed to be: 1500 23/249 Test #101: integration_Run_csg_dump_data ...................... Passed 0.04 sec test 115 Start 115: integration_Run_csg_property 115: Test command: /usr/bin/bash "-c" "/<>/obj-x86_64-linux-gnu/csg/src/tools/csg_property --file /<>/csg/src/tools/references/csg_property/csg_defaults.xml --print . --short --path cg.inverse.gromacs.DESC > csg_property.out" 115: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_property 115: Test timeout computed to be: 1500 24/249 Test #115: integration_Run_csg_property ....................... Passed 0.04 sec test 117 Start 117: integration_Run_csg_property2 117: Test command: /usr/bin/bash "-c" "/<>/obj-x86_64-linux-gnu/csg/src/tools/csg_property --file /<>/csg/src/tools/references/csg_property/csg_defaults.xml --print . --path cg.inverse.gromacs.DESC > csg_property.out2" 117: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_property 117: Test timeout computed to be: 1500 25/249 Test #117: integration_Run_csg_property2 ...................... Passed 0.04 sec test 119 Start 119: integration_Run_csg_property3 119: Test command: /usr/bin/bash "-c" "/<>/obj-x86_64-linux-gnu/csg/src/tools/csg_property --file /<>/csg/src/tools/references/csg_property/test.xml --path A.B.C --print . > csg_property.out3" 119: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_property 119: Test timeout computed to be: 1500 26/249 Test #119: integration_Run_csg_property3 ...................... Passed 0.05 sec test 121 Start 121: integration_Run_csg_property4 121: Test command: /usr/bin/bash "-c" "/<>/obj-x86_64-linux-gnu/csg/src/tools/csg_property --file /<>/csg/src/tools/references/csg_property/test.xml --path A.B --print C > csg_property.out4" 121: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_property 121: Test timeout computed to be: 1500 27/249 Test #121: integration_Run_csg_property4 ...................... Passed 0.03 sec test 124 Start 124: integration_Run_csg_boltzmann_ppy 124: Test command: /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/csg_boltzmann "--top" "topol.tpr" "--cg" "ppy10.xml" "--excl" "excl.txt" 124: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_boltzmann_ppy 124: Test timeout computed to be: 1500 124: Reading file topol.tpr, VERSION 2024.2-Debian_2024.2_1 (double precision) 124: I have 82 beads in 1 molecules 124: I have 10 beads in 1 molecules for the coarsegraining 124: Writing exclusion list for atomistic molecule Protein in coarse grained representation Protein 28/249 Test #124: integration_Run_csg_boltzmann_ppy .................. Passed 0.02 sec test 127 Start 127: integration_Run_csg_boltzmann_mma 127: Test command: /<>/obj-x86_64-linux-gnu/csg/src/csg_boltzmann/csg_boltzmann "--top" "topol.tpr" "--cg" "mapping.xml" "--excl" "excl.txt" 127: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_boltzmann_mma 127: Test timeout computed to be: 1500 127: Reading file topol.tpr, VERSION 2024.2-Debian_2024.2_1 (double precision) 127: I have 53 beads in 1 molecules 127: I have 11 beads in 1 molecules for the coarsegraining 127: Writing exclusion list for atomistic molecule 3-MMA in coarse grained representation 3-MMA 29/249 Test #127: integration_Run_csg_boltzmann_mma .................. Passed 0.02 sec test 1 Start 1: integration_votca_propertyHelp 1: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tools/votca_property "--help" 1: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tools 1: Test timeout computed to be: 1500 1: ================================================== 1: ======== VOTCA (http://www.votca.org) ======== 1: ================================================== 1: 1: please submit bugs to https://github.com/votca/votca/issues 1: 1: votca_property 1: votca_tools, version 2024 (compiled Feb 29 2024, 03:52:32) 1: 1: Helper for parsing XML files 1: 1: 1: Allowed options: 1: -h [ --help ] display this help and exit 1: --verbose be loud and noisy 1: --verbose1 be very loud and noisy 1: -v [ --verbose2 ] be extremly loud and noisy 1: --file arg xml file to parse 1: --format arg output format [XML TXT] 1: --level arg output from this level 1: 30/249 Test #1: integration_votca_propertyHelp ..................... Passed 0.00 sec test 2 Start 2: unit_test_calculator 2: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_calculator 2: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 2: Test timeout computed to be: 1500 2: Running 1 test case... 2: 2: *** No errors detected 2:  31/249 Test #2: unit_test_calculator ............................... Passed 0.01 sec test 3 Start 3: unit_test_constants 3: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_constants 3: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 3: Test timeout computed to be: 1500 3: Running 1 test case... 3: 3: *** No errors detected 3:  32/249 Test #3: unit_test_constants ................................ Passed 0.01 sec test 4 Start 4: unit_test_correlate 4: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_correlate 4: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 4: Test timeout computed to be: 1500 4: Running 1 test case... 4: 4: *** No errors detected 4:  33/249 Test #4: unit_test_correlate ................................ Passed 0.01 sec test 5 Start 5: unit_test_crosscorrelate 5: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_crosscorrelate 5: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 5: Test timeout computed to be: 1500 5: Running 1 test case... 5: 5: *** No errors detected 5:  34/249 Test #5: unit_test_crosscorrelate ........................... Passed 0.01 sec test 6 Start 6: unit_test_cubicspline 6: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_cubicspline 6: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 6: Test timeout computed to be: 1500 6: Running 5 test cases... 6: 6: *** No errors detected 6:  35/249 Test #6: unit_test_cubicspline .............................. Passed 0.02 sec test 7 Start 7: unit_test_datacollection 7: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_datacollection 7: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 7: Test timeout computed to be: 1500 7: Running 6 test cases... 7: 7: *** No errors detected 7:  36/249 Test #7: unit_test_datacollection ........................... Passed 0.01 sec test 8 Start 8: unit_test_edge_base 8: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_edge_base 8: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 8: Test timeout computed to be: 1500 8: Running 8 test cases... 8: Vertices 8: 2 3 8: 8: 8: *** No errors detected 8:  37/249 Test #8: unit_test_edge_base ................................ Passed 0.01 sec test 9 Start 9: unit_test_edgecontainer 9: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_edgecontainer 9: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 9: Test timeout computed to be: 1500 9: Running 10 test cases... 9: 9: *** No errors detected 9:  38/249 Test #9: unit_test_edgecontainer ............................ Passed 0.02 sec test 10 Start 10: unit_test_elements 10: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_elements 10: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 10: Test timeout computed to be: 1500 10: Running 2 test cases... 10: 10: *** No errors detected 10:  39/249 Test #10: unit_test_elements ................................. Passed 0.01 sec test 11 Start 11: unit_test_filesystem 11: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_filesystem 11: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 11: Test timeout computed to be: 1500 11: Running 3 test cases... 11: 11: *** No errors detected 11:  40/249 Test #11: unit_test_filesystem ............................... Passed 0.01 sec test 12 Start 12: unit_test_floatingpointcomparison 12: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_floatingpointcomparison 12: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 12: Test timeout computed to be: 1500 12: Running 1 test case... 12: 12: *** No errors detected 12:  41/249 Test #12: unit_test_floatingpointcomparison .................. Passed 0.01 sec test 13 Start 13: unit_test_graphalgorithm 13: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_graphalgorithm 13: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 13: Test timeout computed to be: 1500 13: Running 5 test cases... 13: is single network 1 13: EDGE CHECK ************************************** 13: 13: *** No errors detected 13:  42/249 Test #13: unit_test_graphalgorithm ........................... Passed 0.02 sec test 14 Start 14: unit_test_graph_base 14: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_graph_base 14: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 14: Test timeout computed to be: 1500 14: Running 8 test cases... 14: 14: *** No errors detected 14:  43/249 Test #14: unit_test_graph_base ............................... Passed 0.02 sec test 15 Start 15: unit_test_graph_bf_visitor 15: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_graph_bf_visitor 15: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 15: Test timeout computed to be: 1500 15: Running 3 test cases... 15: 15: *** No errors detected 15:  44/249 Test #15: unit_test_graph_bf_visitor ......................... Passed 0.01 sec test 16 Start 16: unit_test_graph_df_visitor 16: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_graph_df_visitor 16: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 16: Test timeout computed to be: 1500 16: Running 3 test cases... 16: 16: *** No errors detected 16:  45/249 Test #16: unit_test_graph_df_visitor ......................... Passed 0.01 sec test 17 Start 17: unit_test_graphdistvisitor 17: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_graphdistvisitor 17: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 17: Test timeout computed to be: 1500 17: Running 3 test cases... 17: 17: *** No errors detected 17:  46/249 Test #17: unit_test_graphdistvisitor ......................... Passed 0.01 sec test 18 Start 18: unit_test_graphnode 18: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_graphnode 18: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 18: Test timeout computed to be: 1500 18: Running 4 test cases... 18: 18: *** No errors detected 18:  47/249 Test #18: unit_test_graphnode ................................ Passed 0.02 sec test 19 Start 19: unit_test_graphvisitor 19: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_graphvisitor 19: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 19: Test timeout computed to be: 1500 19: Running 2 test cases... 19: 19: *** No errors detected 19:  48/249 Test #19: unit_test_graphvisitor ............................. Passed 0.02 sec test 20 Start 20: unit_test_histogramnew 20: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_histogramnew 20: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 20: Test timeout computed to be: 1500 20: Running 6 test cases... 20: 20: *** No errors detected 20:  49/249 Test #20: unit_test_histogramnew ............................. Passed 0.02 sec test 21 Start 21: unit_test_identity 21: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_identity 21: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 21: Test timeout computed to be: 1500 21: Running 2 test cases... 21: 21: *** No errors detected 21:  50/249 Test #21: unit_test_identity ................................. Passed 0.01 sec test 22 Start 22: unit_test_linalg 22: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_linalg 22: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 22: Test timeout computed to be: 1500 22: Running 1 test case... 22: 22: *** No errors detected 22:  51/249 Test #22: unit_test_linalg ................................... Passed 0.01 sec test 23 Start 23: unit_test_name 23: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_name 23: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 23: Test timeout computed to be: 1500 23: Running 2 test cases... 23: 23: *** No errors detected 23:  52/249 Test #23: unit_test_name ..................................... Passed 0.01 sec test 24 Start 24: unit_test_objectfactory 24: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_objectfactory 24: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 24: Test timeout computed to be: 1500 24: Running 1 test case... 24: 24: *** No errors detected 24:  53/249 Test #24: unit_test_objectfactory ............................ Passed 0.01 sec test 25 Start 25: unit_test_optionshandler 25: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_optionshandler 25: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 25: Test timeout computed to be: 1500 25: Running 6 test cases... 25: 25: *** No errors detected 25:  54/249 Test #25: unit_test_optionshandler ........................... Passed 0.02 sec test 26 Start 26: unit_test_property 26: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_property 26: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 26: Test timeout computed to be: 1500 26: Running 8 test cases... 26: 26: *** No errors detected 26:  55/249 Test #26: unit_test_property ................................. Passed 0.02 sec test 27 Start 27: unit_test_reducededge 27: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_reducededge 27: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 27: Test timeout computed to be: 1500 27: Running 10 test cases... 27: Vertices 27: 2 3 27: 27: 27: *** No errors detected 27:  56/249 Test #27: unit_test_reducededge .............................. Passed 0.02 sec test 28 Start 28: unit_test_reducedgraph 28: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_reducedgraph 28: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 28: Test timeout computed to be: 1500 28: Running 9 test cases... 28: 4 28: 3 28: 2 28: 0 28: 28: *** No errors detected 28:  57/249 Test #28: unit_test_reducedgraph ............................. Passed 0.02 sec test 29 Start 29: unit_test_structureparameters 29: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_structureparameters 29: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 29: Test timeout computed to be: 1500 29: Running 3 test cases... 29: 29: *** No errors detected 29:  58/249 Test #29: unit_test_structureparameters ...................... Passed 0.01 sec test 30 Start 30: unit_test_table 30: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_table 30: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 30: Test timeout computed to be: 1500 30: Running 10 test cases... 30: 30: *** No errors detected 30:  59/249 Test #30: unit_test_table .................................... Passed 0.01 sec test 31 Start 31: unit_test_thread 31: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_thread 31: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 31: Test timeout computed to be: 1500 31: Running 3 test cases... 31: 31: *** No errors detected 31:  60/249 Test #31: unit_test_thread ................................... Passed 0.02 sec test 32 Start 32: unit_test_tokenizer 32: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_tokenizer 32: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 32: Test timeout computed to be: 1500 32: Running 5 test cases... 32: 32: *** No errors detected 32:  61/249 Test #32: unit_test_tokenizer ................................ Passed 0.01 sec test 33 Start 33: unit_test_random 33: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_random 33: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 33: Test timeout computed to be: 1500 33: Running 2 test cases... 33: 33: *** No errors detected 33:  62/249 Test #33: unit_test_random ................................... Passed 0.02 sec test 34 Start 34: unit_test_akimaspline 34: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_akimaspline 34: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 34: Test timeout computed to be: 1500 34: Running 1 test case... 34: 34: *** No errors detected 34:  63/249 Test #34: unit_test_akimaspline .............................. Passed 0.01 sec test 35 Start 35: unit_test_linspline 35: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_linspline 35: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 35: Test timeout computed to be: 1500 35: Running 2 test cases... 35: 35: *** No errors detected 35:  64/249 Test #35: unit_test_linspline ................................ Passed 0.01 sec test 36 Start 36: unit_test_unitconverter 36: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_unitconverter 36: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 36: Test timeout computed to be: 1500 36: Running 9 test cases... 36: 36: *** No errors detected 36:  65/249 Test #36: unit_test_unitconverter ............................ Passed 0.01 sec test 37 Start 37: unit_test_NDimVector 37: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_NDimVector 37: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 37: Test timeout computed to be: 1500 37: Running 1 test case... 37: 37: *** No errors detected 37:  66/249 Test #37: unit_test_NDimVector ............................... Passed 0.01 sec test 38 Start 38: unit_test_eigenio_matrixmarket 38: Test command: /<>/obj-x86_64-linux-gnu/tools/src/tests/unit_test_eigenio_matrixmarket 38: Working Directory: /<>/obj-x86_64-linux-gnu/tools/src/tests 38: Test timeout computed to be: 1500 38: Running 4 test cases... 38: /<>/tools/src/tests/DataFiles 38: 38: *** No errors detected 38:  67/249 Test #38: unit_test_eigenio_matrixmarket ..................... Passed 0.01 sec test 39 Start 39: integration_csg_reupdateHelp 39: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_reupdate "--help" 39: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 39: Test timeout computed to be: 1500 39: ================================================== 39: ======== VOTCA (http://www.votca.org) ======== 39: ================================================== 39: 39: please submit bugs to https://github.com/votca/votca/issues 39: 39: csg_reupdate, version 2024 (compiled Feb 29 2024, 03:52:32) 39: gromacs, 2024.2-Debian_2024.2_1 (single precision) 39: 39: computes relative entropy update. 39: 39: 39: Allowed options: 39: -h [ --help ] display this help and exit 39: --verbose be loud and noisy 39: --verbose1 be very loud and noisy 39: -v [ --verbose2 ] be extremly loud and noisy 39: --top arg atomistic topology file (only needed for 39: RE update) 39: 39: RE Specific options: 39: --options arg options file for coarse graining 39: --gentable arg (=0) only generate potential tables from given 39: parameters, NO RE update! 39: --interaction arg [OPTIONAL] generate potential tables only 39: for the specified interactions, 39: only valid when 'gentable' is true 39: --param-in-ext arg (=param.cur) Extension of the input parameter tables 39: --param-out-ext arg (=param.new) Extension of the output parameter tables 39: --pot-out-ext arg (=pot.new) Extension of the output potential tables 39: --hessian-check arg (=1) Disable the hessian check (mostly for 39: testing) 39: 39: Threading options: 39: --nt arg (=1) number of threads 39: 39: Trajectory options: 39: --trj arg atomistic trajectory file 39: --begin arg (=0) skip frames before this time (only works 39: for Gromacs files) 39: --first-frame arg (=0) start with this frame 39: --nframes arg process the given number of frames 39: 68/249 Test #39: integration_csg_reupdateHelp ....................... Passed 0.04 sec test 40 Start 40: integration_csg_mapHelp 40: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_map "--help" 40: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 40: Test timeout computed to be: 1500 40: ================================================== 40: ======== VOTCA (http://www.votca.org) ======== 40: ================================================== 40: 40: please submit bugs to https://github.com/votca/votca/issues 40: 40: csg_map, version 2024 (compiled Feb 29 2024, 03:52:32) 40: gromacs, 2024.2-Debian_2024.2_1 (single precision) 40: 40: Convert a reference atomistic trajectory or configuration into a coarse-grained one 40: based on a mapping xml-file. The mapping can be applied to either an entire trajectory 40: or a selected set of frames only (see options). 40: Examples: 40: * csg_map --top FA-topol.tpr --trj FA-traj.trr --out CG-traj.xtc --cg cg-map.xml 40: * csg_map --top FA-topol.tpr --trj FA-conf.gro --out CG-conf.gro --cg cg-map.xml 40: * csg_map --top FA-topol.tpr --trj FA-traj.xtc --out FA-history.dlph --no-map 40: * csg_map --top FA-field.dlpf --trj FA-history.dlph --out CG-history.dlph --cg cg-map.xml 40: * csg_map --top .dlpf --trj .dlph --out .dlph --cg cg-map.xml convert HISTORY to HISTORY_CGV 40: 40: 40: 40: Allowed options: 40: -h [ --help ] display this help and exit 40: --verbose be loud and noisy 40: --verbose1 be very loud and noisy 40: -v [ --verbose2 ] be extremly loud and noisy 40: --top arg atomistic topology file 40: --out arg output file for coarse-grained trajectory 40: --vel Write mapped velocities (if available) 40: --force Write mapped forces (if available) 40: --hybrid Create hybrid trajectory containing both atomistic 40: and coarse-grained 40: 40: Mapping options: 40: --cg arg coarse graining mapping and bond definitions 40: (xml-file) 40: --map-ignore arg list of molecules to ignore separated by ; 40: --no-map disable mapping and act on original trajectory 40: 40: Trajectory options: 40: --trj arg atomistic trajectory file 40: --begin arg (=0) skip frames before this time (only works for 40: Gromacs files) 40: --first-frame arg (=0) start with this frame 40: --nframes arg process the given number of frames 40: 69/249 Test #40: integration_csg_mapHelp ............................ Passed 0.04 sec test 41 Start 41: integration_csg_dumpHelp 41: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dump "--help" 41: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 41: Test timeout computed to be: 1500 41: ================================================== 41: ======== VOTCA (http://www.votca.org) ======== 41: ================================================== 41: 41: please submit bugs to https://github.com/votca/votca/issues 41: 41: csg_dump, version 2024 (compiled Feb 29 2024, 03:52:32) 41: gromacs, 2024.2-Debian_2024.2_1 (single precision) 41: 41: Print atoms that are read from topology file to help debugging atom naming. 41: 41: 41: Allowed options: 41: -h [ --help ] display this help and exit 41: --verbose be loud and noisy 41: --verbose1 be very loud and noisy 41: -v [ --verbose2 ] be extremly loud and noisy 41: --top arg atomistic topology file 41: 41: Mapping options: 41: --cg arg [OPTIONAL] coarse graining mapping and bond 41: definitions 41: (xml-file). If no file is given, program acts on 41: original trajectory 41: --map-ignore arg list of molecules to ignore if mapping is done 41: separated by ; 41: 41: Specific options: 41: --excl display exclusion list instead of molecule list 41: 70/249 Test #41: integration_csg_dumpHelp ........................... Passed 0.04 sec test 42 Start 42: integration_csg_propertyHelp 42: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_property "--help" 42: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 42: Test timeout computed to be: 1500 42: ================================================== 42: ======== VOTCA (http://www.votca.org) ======== 42: ================================================== 42: 42: please submit bugs to https://github.com/votca/votca/issues 42: 42: csg_property, version 2024 (compiled Feb 29 2024, 03:52:32) 42: gromacs, 2024.2-Debian_2024.2_1 (single precision) 42: 42: Helper program called by inverse scripts to parse xml file. 42: 42: Allowed options: 42: --help produce this help message 42: --path arg path to part of the xml file to print 42: --filter arg list option values that match given criteria 42: --print arg (=.) specifies which children or root to print 42: --file arg xml file to parse 42: --short short version of output 42: --with-path include path of node in output 42: 71/249 Test #42: integration_csg_propertyHelp ....................... Passed 0.02 sec test 43 Start 43: integration_csg_resampleHelp 43: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_resample "--help" 43: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 43: Test timeout computed to be: 1500 43: ================================================== 43: ======== VOTCA (http://www.votca.org) ======== 43: ================================================== 43: 43: please submit bugs to https://github.com/votca/votca/issues 43: 43: csg_resample, version 2024 (compiled Feb 29 2024, 03:52:32) 43: gromacs, 2024.2-Debian_2024.2_1 (single precision) 43: 43: Change grid and interval of any sort of table files. 43: Mainly called internally by inverse script, can also be 43: used to manually prepare input files for coarse-grained 43: simulations. 43: 43: Allowed options: 43: --help produce this help message 43: --in arg table to read 43: --out arg table to write 43: --derivative arg table to write 43: --grid arg new grid spacing (min:step:max). If 'grid' is specified 43: only, interpolation is performed. 43: --type arg (=akima) [cubic|akima|linear]. If option is not specified, the 43: default type 'akima' is assumed. 43: --fitgrid arg specify fit grid (min:step:max). If 'grid' and 43: 'fitgrid' are specified, a fit is performed. 43: --nocut Option for fitgrid: Normally, values out of fitgrid 43: boundaries are cut off. If they shouldn't, choose 43: --nocut. 43: --comment arg store a comment in the output table 43: --boundaries arg (natural|periodic|derivativezero) sets boundary 43: conditions 43: 72/249 Test #43: integration_csg_resampleHelp ....................... Passed 0.02 sec test 44 Start 44: integration_csg_statHelp 44: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_stat "--help" 44: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 44: Test timeout computed to be: 1500 44: ================================================== 44: ======== VOTCA (http://www.votca.org) ======== 44: ================================================== 44: 44: please submit bugs to https://github.com/votca/votca/issues 44: 44: csg_stat, version 2024 (compiled Feb 29 2024, 03:52:32) 44: gromacs, 2024.2-Debian_2024.2_1 (single precision) 44: 44: Calculate all distributions (bonded and non-bonded) specified in options file. 44: Optionally calculates update Eigen::Matrix3d for invere Monte Carlo. This program 44: is called inside the inverse scripts. Unlike csg_boltzmann, big systems 44: can be treated as well as non-bonded interactions can be evaluated. 44: 44: 44: Allowed options: 44: -h [ --help ] display this help and exit 44: --verbose be loud and noisy 44: --verbose1 be very loud and noisy 44: -v [ --verbose2 ] be extremly loud and noisy 44: --top arg atomistic topology file 44: 44: Mapping options: 44: --cg arg [OPTIONAL] coarse graining mapping and bond 44: definitions 44: (xml-file). If no file is given, program acts on 44: original trajectory 44: --map-ignore arg list of molecules to ignore if mapping is done 44: separated by ; 44: 44: Specific options: 44: --options arg options file for coarse graining 44: --do-imc write out additional Inverse Monte Carlo data 44: --include-intra do not exclude intramolecular neighbors 44: --block-length arg write blocks of this length, the averages are 44: cleared after every write 44: --ext arg (=dist.new) Extension of the output 44: 44: Threading options: 44: --nt arg (=1) number of threads 44: 44: Trajectory options: 44: --trj arg atomistic trajectory file 44: --begin arg (=0) skip frames before this time (only works for 44: Gromacs files) 44: --first-frame arg (=0) start with this frame 44: --nframes arg process the given number of frames 44: 73/249 Test #44: integration_csg_statHelp ........................... Passed 0.02 sec test 45 Start 45: integration_csg_fmatchHelp 45: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_fmatch "--help" 45: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 45: Test timeout computed to be: 1500 45: ================================================== 45: ======== VOTCA (http://www.votca.org) ======== 45: ================================================== 45: 45: please submit bugs to https://github.com/votca/votca/issues 45: 45: csg_fmatch, version 2024 (compiled Feb 29 2024, 03:52:32) 45: gromacs, 2024.2-Debian_2024.2_1 (single precision) 45: 45: Perform force matching (also called multiscale coarse-graining) 45: 45: 45: Allowed options: 45: -h [ --help ] display this help and exit 45: --verbose be loud and noisy 45: --verbose1 be very loud and noisy 45: -v [ --verbose2 ] be extremly loud and noisy 45: --top arg atomistic topology file 45: --options arg options file for coarse graining 45: --trj-force arg coarse-grained trajectory containing forces of 45: already known interactions 45: 45: Mapping options: 45: --cg arg coarse graining mapping and bond definitions 45: (xml-file) 45: --map-ignore arg list of molecules to ignore separated by ; 45: --no-map disable mapping and act on original trajectory 45: 45: Trajectory options: 45: --trj arg atomistic trajectory file 45: --begin arg (=0) skip frames before this time (only works for 45: Gromacs files) 45: --first-frame arg (=0) start with this frame 45: --nframes arg process the given number of frames 45: 74/249 Test #45: integration_csg_fmatchHelp ......................... Passed 0.02 sec test 46 Start 46: integration_csg_gmxtopolHelp 46: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_gmxtopol "--help" 46: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 46: Test timeout computed to be: 1500 46: ================================================== 46: ======== VOTCA (http://www.votca.org) ======== 46: ================================================== 46: 46: please submit bugs to https://github.com/votca/votca/issues 46: 46: csg_gmxtopol, version 2024 (compiled Feb 29 2024, 03:52:32) 46: gromacs, 2024.2-Debian_2024.2_1 (single precision) 46: 46: Create skeleton for gromacs topology based on atomistic topology 46: and a mapping file. File still needs to be modified by the user. 46: 46: 46: Allowed options: 46: -h [ --help ] display this help and exit 46: --verbose be loud and noisy 46: --verbose1 be very loud and noisy 46: -v [ --verbose2 ] be extremly loud and noisy 46: --top arg atomistic topology file 46: --out arg output topology (will create .top and in future also 46: .itp) 46: 46: Mapping options: 46: --cg arg coarse graining mapping and bond definitions 46: (xml-file) 46: --map-ignore arg list of molecules to ignore separated by ; 46: --no-map disable mapping and act on original trajectory 46: 75/249 Test #46: integration_csg_gmxtopolHelp ....................... Passed 0.04 sec test 47 Start 47: integration_csg_dlptopolHelp 47: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dlptopol "--help" 47: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 47: Test timeout computed to be: 1500 47: ================================================== 47: ======== VOTCA (http://www.votca.org) ======== 47: ================================================== 47: 47: please submit bugs to https://github.com/votca/votca/issues 47: 47: csg_dlptopol, version 2024 (compiled Feb 29 2024, 03:52:32) 47: gromacs, 2024.2-Debian_2024.2_1 (single precision) 47: 47: Create a dlpoly topology template based on an existing (atomistic) topology and 47: a mapping xml-file. The created template file needs to be inspected and amended by the user! 47: 47: Examples: 47: * csg_dlptopol --top .dlpf --out .dlpf --cg cg-map.xml 47: convert FIELD to FIELD_CGV using cg-map.xml 47: * csg_dlptopol --top FA-dlpoly.dlpf --out CG-dlpoly.dlpf --cg cg-map.xml 47: * csg_dlptopol --top FA-gromacs.tpr --out FA-dlpoly.dlpf --no-map 47: 47: 47: 47: Allowed options: 47: -h [ --help ] display this help and exit 47: --verbose be loud and noisy 47: --verbose1 be very loud and noisy 47: -v [ --verbose2 ] be extremly loud and noisy 47: --top arg atomistic topology file 47: --out arg output topology in dlpoly format 47: 47: Mapping options: 47: --cg arg coarse graining mapping and bond definitions 47: (xml-file) 47: --map-ignore arg list of molecules to ignore separated by ; 47: --no-map disable mapping and act on original trajectory 47: 76/249 Test #47: integration_csg_dlptopolHelp ....................... Passed 0.04 sec test 48 Start 48: integration_csg_densityHelp 48: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_density "--help" 48: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 48: Test timeout computed to be: 1500 48: ================================================== 48: ======== VOTCA (http://www.votca.org) ======== 48: ================================================== 48: 48: please submit bugs to https://github.com/votca/votca/issues 48: 48: csg_density, version 2024 (compiled Feb 29 2024, 03:52:32) 48: gromacs, 2024.2-Debian_2024.2_1 (single precision) 48: 48: Calculates the mass density distribution along a box axis or radial density profile from reference point 48: 48: 48: Allowed options: 48: -h [ --help ] display this help and exit 48: --verbose be loud and noisy 48: --verbose1 be very loud and noisy 48: -v [ --verbose2 ] be extremly loud and noisy 48: --top arg atomistic topology file 48: 48: Mapping options: 48: --cg arg [OPTIONAL] coarse graining mapping and bond 48: definitions 48: (xml-file). If no file is given, program acts on 48: original trajectory 48: --map-ignore arg list of molecules to ignore if mapping is done 48: separated by ; 48: 48: Specific options:: 48: --type arg (=mass) density type: mass or number 48: --axis arg (=r) [x|y|z|r] density axis (r=spherical) 48: --step arg (=0.01) spacing of density 48: --block-length arg write blocks of this length, the averages are 48: cleared after every write 48: --out arg Output file 48: --rmax arg rmax (default for [r] =min of all box vectors/2, else 48: l ) 48: --scale arg (=1) scale factor for the density 48: --molname arg (=*) molname 48: --filter arg (=*) filter bead names 48: --ref arg reference zero point 48: 48: Trajectory options: 48: --trj arg atomistic trajectory file 48: --begin arg (=0) skip frames before this time (only works for 48: Gromacs files) 48: --first-frame arg (=0) start with this frame 48: --nframes arg process the given number of frames 48: 77/249 Test #48: integration_csg_densityHelp ........................ Passed 0.04 sec test 49 Start 49: integration_csg_imc_solveHelp 49: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_imc_solve "--help" 49: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools 49: Test timeout computed to be: 1500 49: ================================================== 49: ======== VOTCA (http://www.votca.org) ======== 49: ================================================== 49: 49: please submit bugs to https://github.com/votca/votca/issues 49: 49: csg_imc_solve, version 2024 (compiled Feb 29 2024, 03:52:32) 49: gromacs, 2024.2-Debian_2024.2_1 (single precision) 49: 49: Solves the linear system for IMCs 49: 49: 49: Allowed options: 49: -h [ --help ] display this help and exit 49: --verbose be loud and noisy 49: --verbose1 be very loud and noisy 49: -v [ --verbose2 ] be extremly loud and noisy 49: -r [ --regularization ] arg (=0) regularization factor 49: -i [ --imcfile ] arg imc statefile 49: -g [ --gmcfile ] arg gmc statefile 49: -n [ --idxfile ] arg idx statefile 49: 78/249 Test #49: integration_csg_imc_solveHelp ...................... Passed 0.04 sec test 51 Start 51: integration_Compare_csg_reupdate_output 51: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.pot.new" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.pot.re" 51: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_reupdate 51: Test timeout computed to be: 1500 51: Comparing CG-CG.pot.new and /<>/csg/src/tools/references/spce/CG-CG.pot.re to a tolerance of 5e-05 79/249 Test #51: integration_Compare_csg_reupdate_output ............ Passed 0.06 sec test 53 Start 53: integration_Compare_csg_reupdate_output2 53: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.pot.new" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.pot.new.re" 53: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_reupdate2 53: Test timeout computed to be: 1500 53: Comparing CG-CG.pot.new and /<>/csg/src/tools/references/spce/CG-CG.pot.new.re to a tolerance of 5e-05 80/249 Test #53: integration_Compare_csg_reupdate_output2 ........... Passed 0.05 sec test 54 Start 54: integration_Compare_csg_reupdate_output3 54: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.param.new" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.param.re" 54: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_reupdate2 54: Test timeout computed to be: 1500 54: Comparing CG-CG.param.new and /<>/csg/src/tools/references/spce/CG-CG.param.re to a tolerance of 5e-05 81/249 Test #54: integration_Compare_csg_reupdate_output3 ........... Passed 0.07 sec test 57 Start 57: integration_Compare_csg_reupdate_gmx_output 57: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.pot.new" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.pot.new.re_gmx" 57: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_reupdate_gmx 57: Test timeout computed to be: 1500 57: Comparing CG-CG.pot.new and /<>/csg/src/tools/references/spce/CG-CG.pot.new.re_gmx to a tolerance of 5e-05 82/249 Test #57: integration_Compare_csg_reupdate_gmx_output ........ Passed 0.04 sec test 58 Start 58: integration_Compare_csg_reupdate_gmx_output2 58: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.param.new" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.param.re_gmx" 58: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_reupdate_gmx 58: Test timeout computed to be: 1500 58: Comparing CG-CG.param.new and /<>/csg/src/tools/references/spce/CG-CG.param.re_gmx to a tolerance of 5e-05 83/249 Test #58: integration_Compare_csg_reupdate_gmx_output2 ....... Passed 0.03 sec test 60 Start 60: integration_Compare_csg_fmatch_output 60: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.force" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.force.fmatch" 60: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_fmatch 60: Test timeout computed to be: 1500 60: Comparing CG-CG.force and /<>/csg/src/tools/references/spce/CG-CG.force.fmatch to a tolerance of 5e-05 84/249 Test #60: integration_Compare_csg_fmatch_output .............. Passed 0.03 sec test 62 Start 62: integration_Compare_csg_fmatch_3body_output1 62: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.force" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.force.fmatch_3body" 62: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_fmatch_3body 62: Test timeout computed to be: 1500 62: Comparing CG-CG.force and /<>/csg/src/tools/references/spce/CG-CG.force.fmatch_3body to a tolerance of 5e-05 85/249 Test #62: integration_Compare_csg_fmatch_3body_output1 ....... Passed 0.06 sec test 63 Start 63: integration_Compare_csg_fmatch_3body_output2 63: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG-CG.force" "-f2" "/<>/csg/src/tools/references/spce/CG-CG-CG.force.fmatch_3body" 63: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_fmatch_3body 63: Test timeout computed to be: 1500 63: Comparing CG-CG-CG.force and /<>/csg/src/tools/references/spce/CG-CG-CG.force.fmatch_3body to a tolerance of 5e-05 86/249 Test #63: integration_Compare_csg_fmatch_3body_output2 ....... Passed 0.06 sec test 64 Start 64: integration_Compare_csg_fmatch_3body_output3 64: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG-CG.pot" "-f2" "/<>/csg/src/tools/references/spce/CG-CG-CG.pot.fmatch_3body" 64: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_fmatch_3body 64: Test timeout computed to be: 1500 64: Comparing CG-CG-CG.pot and /<>/csg/src/tools/references/spce/CG-CG-CG.pot.fmatch_3body to a tolerance of 5e-05 87/249 Test #64: integration_Compare_csg_fmatch_3body_output3 ....... Passed 0.06 sec test 66 Start 66: integration_Compare_csg_map_output 66: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "frame.dump" "-f2" "/<>/csg/src/tools/references/spce/frame.dump" 66: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_map 66: Test timeout computed to be: 1500 66: Comparing frame.dump and /<>/csg/src/tools/references/spce/frame.dump to a tolerance of 5e-05 88/249 Test #66: integration_Compare_csg_map_output ................. Passed 0.04 sec test 68 Start 68: integration_Compare_csg_map_gro_output 68: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "conf_cg.gro" "-f2" "/<>/csg/src/tools/references/spce/conf_cg.gro" 68: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_map_gro 68: Test timeout computed to be: 1500 68: Comparing conf_cg.gro and /<>/csg/src/tools/references/spce/conf_cg.gro to a tolerance of 5e-05 89/249 Test #68: integration_Compare_csg_map_gro_output ............. Passed 0.03 sec test 70 Start 70: integration_Compare_csg_stat_output1 70: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.dist.new" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.rdf" 70: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat 70: Test timeout computed to be: 1500 70: Comparing CG-CG.dist.new and /<>/csg/src/tools/references/spce/CG-CG.rdf to a tolerance of 5e-05 90/249 Test #70: integration_Compare_csg_stat_output1 ............... Passed 0.03 sec test 71 Start 71: integration_Compare_csg_stat_output2 71: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.force.new" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.pmf" 71: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat 71: Test timeout computed to be: 1500 71: Comparing CG-CG.force.new and /<>/csg/src/tools/references/spce/CG-CG.pmf to a tolerance of 5e-05 91/249 Test #71: integration_Compare_csg_stat_output2 ............... Passed 0.06 sec test 73 Start 73: integration_Compare_csg_stat_angular_output 73: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG-CG.dist.new" "-f2" "/<>/csg/src/tools/references/spce/CG-CG-CG.angular" 73: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat_angular 73: Test timeout computed to be: 1500 73: Comparing CG-CG-CG.dist.new and /<>/csg/src/tools/references/spce/CG-CG-CG.angular to a tolerance of 5e-05 92/249 Test #73: integration_Compare_csg_stat_angular_output ........ Passed 0.07 sec test 75 Start 75: integration_Compare_csg_stat-imc_output 75: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.imc" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.imc" 75: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat-imc 75: Test timeout computed to be: 1500 75: Comparing CG-CG.imc and /<>/csg/src/tools/references/spce/CG-CG.imc to a tolerance of 5e-05 93/249 Test #75: integration_Compare_csg_stat-imc_output ............ Passed 0.07 sec test 76 Start 76: integration_Compare_csg_stat-imc_output_2 76: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.dist.new" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.dist.imc" 76: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat-imc 76: Test timeout computed to be: 1500 76: Comparing CG-CG.dist.new and /<>/csg/src/tools/references/spce/CG-CG.dist.imc to a tolerance of 5e-05 94/249 Test #76: integration_Compare_csg_stat-imc_output_2 .......... Passed 0.03 sec test 77 Start 77: integration_Compare_csg_stat-imc_output_3 77: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.gmc" "-f2" "/<>/csg/src/tools/references/spce/CG-CG.gmc" 77: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat-imc 77: Test timeout computed to be: 1500 77: Comparing CG-CG.gmc and /<>/csg/src/tools/references/spce/CG-CG.gmc to a tolerance of 5e-05 95/249 Test #77: integration_Compare_csg_stat-imc_output_3 .......... Passed 0.03 sec test 78 Start 78: integration_Compare_csg_stat-imc_output_4 78: Test command: /usr/bin/cmake "-E" "compare_files" "CG-CG.idx" "/<>/csg/src/tools/references/spce/CG-CG.idx" 78: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat-imc 78: Test timeout computed to be: 1500 96/249 Test #78: integration_Compare_csg_stat-imc_output_4 .......... Passed 0.02 sec test 80 Start 80: integration_Compare_csg_imc_solve_output 80: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "CG-CG.dpot.imc" "-f2" "/<>/csg/src/tools/references/spce/imc/CG-CG.dpot.imc" 80: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_imc_solve 80: Test timeout computed to be: 1500 80: Comparing CG-CG.dpot.imc and /<>/csg/src/tools/references/spce/imc/CG-CG.dpot.imc to a tolerance of 5e-05 97/249 Test #80: integration_Compare_csg_imc_solve_output ........... Passed 0.07 sec test 82 Start 82: integration_Compare_csg_imc_solve_reg_output_2 82: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "LJ1-LJ1.dpot.imc" "-f2" "/<>/csg/src/tools/references/LJ1-LJ2/LJ1-LJ1.dpot.imc" 82: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_imc_solve_reg 82: Test timeout computed to be: 1500 82: Comparing LJ1-LJ1.dpot.imc and /<>/csg/src/tools/references/LJ1-LJ2/LJ1-LJ1.dpot.imc to a tolerance of 5e-05 98/249 Test #82: integration_Compare_csg_imc_solve_reg_output_2 ..... Passed 0.07 sec test 83 Start 83: integration_Compare_csg_imc_solve_reg_output_3 83: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "LJ1-LJ2.dpot.imc" "-f2" "/<>/csg/src/tools/references/LJ1-LJ2/LJ1-LJ2.dpot.imc" 83: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_imc_solve_reg 83: Test timeout computed to be: 1500 83: Comparing LJ1-LJ2.dpot.imc and /<>/csg/src/tools/references/LJ1-LJ2/LJ1-LJ2.dpot.imc to a tolerance of 5e-05 99/249 Test #83: integration_Compare_csg_imc_solve_reg_output_3 ..... Passed 0.07 sec test 84 Start 84: integration_Compare_csg_imc_solve_reg_output_4 84: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "LJ2-LJ2.dpot.imc" "-f2" "/<>/csg/src/tools/references/LJ1-LJ2/LJ2-LJ2.dpot.imc" 84: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_imc_solve_reg 84: Test timeout computed to be: 1500 84: Comparing LJ2-LJ2.dpot.imc and /<>/csg/src/tools/references/LJ1-LJ2/LJ2-LJ2.dpot.imc to a tolerance of 5e-05 100/249 Test #84: integration_Compare_csg_imc_solve_reg_output_4 ..... Passed 0.07 sec test 86 Start 86: integration_Compare_csg_stat-imc_multi_output 86: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "all.imc" "-f2" "/<>/csg/src/tools/references/LJ1-LJ2/smaller_system/all.imc" 86: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat_imc_multi 86: Test timeout computed to be: 1500 86: Comparing all.imc and /<>/csg/src/tools/references/LJ1-LJ2/smaller_system/all.imc to a tolerance of 5e-05 101/249 Test #86: integration_Compare_csg_stat-imc_multi_output ...... Passed 0.08 sec test 87 Start 87: integration_Compare_csg_stat-imc_multi_output_2 87: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "all.gmc" "-f2" "/<>/csg/src/tools/references/LJ1-LJ2/smaller_system/all.gmc" 87: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat_imc_multi 87: Test timeout computed to be: 1500 87: Comparing all.gmc and /<>/csg/src/tools/references/LJ1-LJ2/smaller_system/all.gmc to a tolerance of 5e-05 102/249 Test #87: integration_Compare_csg_stat-imc_multi_output_2 .... Passed 0.12 sec test 88 Start 88: integration_Compare_csg_stat-imc_multi_output_3 88: Test command: /usr/bin/cmake "-E" "compare_files" "all.idx" "/<>/csg/src/tools/references/LJ1-LJ2/smaller_system/all.idx" 88: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_stat_imc_multi 88: Test timeout computed to be: 1500 103/249 Test #88: integration_Compare_csg_stat-imc_multi_output_3 .... Passed 0.02 sec test 90 Start 90: integration_Compare_csg_resample_akima_output 90: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "table_akima" "-f2" "/<>/csg/src/tools/references/csg_resample/table_akima" 90: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_resample 90: Test timeout computed to be: 1500 90: Comparing table_akima and /<>/csg/src/tools/references/csg_resample/table_akima to a tolerance of 5e-05 104/249 Test #90: integration_Compare_csg_resample_akima_output ...... Passed 0.05 sec test 92 Start 92: integration_Compare_csg_resample_cubic_output 92: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "table_cubic" "-f2" "/<>/csg/src/tools/references/csg_resample/table_cubic" 92: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_resample 92: Test timeout computed to be: 1500 92: Comparing table_cubic and /<>/csg/src/tools/references/csg_resample/table_cubic to a tolerance of 5e-05 105/249 Test #92: integration_Compare_csg_resample_cubic_output ...... Passed 0.07 sec test 94 Start 94: integration_Compare_csg_resample_linear_output 94: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "table_linear" "-f2" "/<>/csg/src/tools/references/csg_resample/table_linear" 94: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_resample 94: Test timeout computed to be: 1500 94: Comparing table_linear and /<>/csg/src/tools/references/csg_resample/table_linear to a tolerance of 5e-05 106/249 Test #94: integration_Compare_csg_resample_linear_output ..... Passed 0.04 sec test 96 Start 96: integration_Compare_csg_resample_cubicfit_output 96: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "table_cubicfit" "-f2" "/<>/csg/src/tools/references/csg_resample/table_cubicfit" 96: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_resample 96: Test timeout computed to be: 1500 96: Comparing table_cubicfit and /<>/csg/src/tools/references/csg_resample/table_cubicfit to a tolerance of 5e-05 107/249 Test #96: integration_Compare_csg_resample_cubicfit_output ... Passed 0.03 sec test 98 Start 98: integration_Compare_csg_dump_output 98: Test command: /usr/bin/cmake "-E" "compare_files" "csg_dump.out" "/<>/csg/src/tools/references/methanol-water//csg_dump.out" 98: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_dump 98: Test timeout computed to be: 1500 108/249 Test #98: integration_Compare_csg_dump_output ................ Passed 0.03 sec test 100 Start 100: integration_Compare_csg_dump_gro_output 100: Test command: /usr/bin/cmake "-E" "compare_files" "csg_dump_gro.out" "/<>/csg/src/tools/references/spce/3mols/csg_dump_gro.out" 100: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_dump_gro 100: Test timeout computed to be: 1500 109/249 Test #100: integration_Compare_csg_dump_gro_output ............ Passed 0.02 sec test 102 Start 102: integration_Compare_csg_dump_data_output 102: Test command: /usr/bin/cmake "-E" "compare_files" "csg_dump_data.out" "/<>/csg/src/tools/references/spce/3mols_cg/csg_dump_data.out" 102: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_dump_data 102: Test timeout computed to be: 1500 110/249 Test #102: integration_Compare_csg_dump_data_output ........... Passed 0.03 sec test 116 Start 116: integration_Compare_csg_property_output 116: Test command: /usr/bin/cmake "-E" "compare_files" "csg_property.out" "/<>/csg/src/tools/references/csg_property/csg_property.out" 116: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_property 116: Test timeout computed to be: 1500 111/249 Test #116: integration_Compare_csg_property_output ............ Passed 0.02 sec test 118 Start 118: integration_Compare_csg_property_output2 118: Test command: /usr/bin/cmake "-E" "compare_files" "csg_property.out2" "/<>/csg/src/tools/references/csg_property/csg_property.out2" 118: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_property 118: Test timeout computed to be: 1500 112/249 Test #118: integration_Compare_csg_property_output2 ........... Passed 0.01 sec test 120 Start 120: integration_Compare_csg_property_output3 120: Test command: /usr/bin/cmake "-E" "compare_files" "csg_property.out3" "/<>/csg/src/tools/references/csg_property/csg_property.out3" 120: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_property 120: Test timeout computed to be: 1500 113/249 Test #120: integration_Compare_csg_property_output3 ........... Passed 0.02 sec test 122 Start 122: integration_Compare_csg_property_output4 122: Test command: /usr/bin/cmake "-E" "compare_files" "csg_property.out4" "/<>/csg/src/tools/references/csg_property/csg_property.out4" 122: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_property 122: Test timeout computed to be: 1500 114/249 Test #122: integration_Compare_csg_property_output4 ........... Passed 0.02 sec test 125 Start 125: Compare_csg_boltzmann_output_ppy 125: Test command: /usr/bin/cmake "-E" "compare_files" "excl.txt" "/<>/csg/src/tools/references/ppy//excl.txt" 125: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_boltzmann_ppy 125: Test timeout computed to be: 1500 115/249 Test #125: Compare_csg_boltzmann_output_ppy ................... Passed 0.02 sec test 128 Start 128: Compare_csg_boltzmann_output_mma 128: Test command: /usr/bin/cmake "-E" "compare_files" "excl.txt" "/<>/csg/src/tools/references/mma//excl.txt" 128: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_csg_boltzmann_mma 128: Test timeout computed to be: 1500 116/249 Test #128: Compare_csg_boltzmann_output_mma ................... Passed 0.02 sec test 129 Start 129: fluctuationsHelp 129: Test command: /<>/obj-x86_64-linux-gnu/csg/src/csgapps/fluctuations/csg_fluctuations "--help" 129: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/csgapps 129: Test timeout computed to be: 1500 129: ================================================== 129: ======== VOTCA (http://www.votca.org) ======== 129: ================================================== 129: 129: please submit bugs to https://github.com/votca/votca/issues 129: 129: fluctuations, version 2024 (compiled Feb 29 2024, 03:52:32) 129: gromacs, 2024.2-Debian_2024.2_1 (single precision) 129: 129: calculate density fluctuations in subvolumes of the simulation box.Subolumes can be either cubic slabs in dimensions (x|y|z) or sphericalslabs with respect to either the center of box or a reference molecule 129: 129: 129: Allowed options: 129: -h [ --help ] display this help and exit 129: --verbose be loud and noisy 129: --verbose1 be very loud and noisy 129: -v [ --verbose2 ] be extremly loud and noisy 129: --top arg atomistic topology file 129: 129: Fluctuation options: 129: --filter arg (=*) filter molecule names 129: --rmax arg maximal distance to be considered 129: --rmin arg (=0) minimal distance to be considered 129: --refmol arg Reference molecule 129: --nbin arg (=100) Number of bins 129: --geometry arg (sphere|x|y|z) Take radial or x, y, z 129: slabs from rmin to rmax 129: --outfile arg (=fluctuations.dat) Output file 129: 129: Mapping options: 129: --cg arg coarse graining mapping and bond 129: definitions (xml-file) 129: --map-ignore arg list of molecules to ignore separated by 129: ; 129: --no-map disable mapping and act on original 129: trajectory 129: 129: Trajectory options: 129: --trj arg atomistic trajectory file 129: --begin arg (=0) skip frames before this time (only works 129: for Gromacs files) 129: --first-frame arg (=0) start with this frame 129: --nframes arg process the given number of frames 129: 117/249 Test #129: fluctuationsHelp ................................... Passed 0.02 sec test 130 Start 130: orientcorrHelp 130: Test command: /<>/obj-x86_64-linux-gnu/csg/src/csgapps/orientcorr/csg_orientcorr "--help" 130: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/csgapps 130: Test timeout computed to be: 1500 130: ================================================== 130: ======== VOTCA (http://www.votca.org) ======== 130: ================================================== 130: 130: please submit bugs to https://github.com/votca/votca/issues 130: 130: orientcorr, version 2024 (compiled Feb 29 2024, 03:52:32) 130: gromacs, 2024.2-Debian_2024.2_1 (single precision) 130: 130: Calculates the orientational correlation function 130: <3/2*u(0)*u(r) - 1/2> 130: for a polymer melt, where u is the vector pointing along a bond and 130: r the distance between bond segments (centered on middle of bond). 130: 130: The output is correlation.dat (with intra-molecular contributions) and 130: correlation_excl.dat, where inter-molecular contributions are excluded. 130: 130: 130: Allowed options: 130: -h [ --help ] display this help and exit 130: --verbose be loud and noisy 130: --verbose1 be very loud and noisy 130: -v [ --verbose2 ] be extremly loud and noisy 130: --top arg atomistic topology file 130: 130: Neighbor search options: 130: -c [ --cutoff ] arg (=1) cutoff for the neighbor search 130: --nbins arg (=40) number of bins for the grid 130: --nbmethod arg (=grid) neighbor search algorithm (simple or grid) 130: 130: Threading options: 130: --nt arg (=1) number of threads 130: 130: Trajectory options: 130: --trj arg atomistic trajectory file 130: --begin arg (=0) skip frames before this time (only works for 130: Gromacs files) 130: --first-frame arg (=0) start with this frame 130: --nframes arg process the given number of frames 130: 118/249 Test #130: orientcorrHelp ..................................... Passed 0.02 sec test 131 Start 131: part_distHelp 131: Test command: /<>/obj-x86_64-linux-gnu/csg/src/csgapps/part_dist/csg_part_dist "--help" 131: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/csgapps 131: Test timeout computed to be: 1500 131: ================================================== 131: ======== VOTCA (http://www.votca.org) ======== 131: ================================================== 131: 131: please submit bugs to https://github.com/votca/votca/issues 131: 131: csg_part_dist, version 2024 (compiled Feb 29 2024, 03:52:32) 131: gromacs, 2024.2-Debian_2024.2_1 (single precision) 131: 131: This program reads a topology and (set of) trajectory(ies). For every 131: binned value of a chosen coordinate, it outputs the time-averaged number of 131: particles, listed by particle types. 131: 131: Allowed options: 131: --top arg topology file 131: --trj arg trajectory file 131: --grid arg output grid spacing (min:step:max) 131: --out arg output particle distribution table 131: --ptypes arg particle types to include in the analysis 131: arg: file - particle types separated by space 131: default: all particle types 131: --first_frame arg first frame considered for analysis 131: --last_frame arg last frame considered for analysis 131: --coord arg coordinate analyzed ('x', 'y', or 'z' (default)) 131: --shift_com shift center of mass to zero 131: --comment arg store a comment in the output table 131: --help produce this help message 131: 119/249 Test #131: part_distHelp ...................................... Passed 0.02 sec test 132 Start 132: partial_rdfHelp 132: Test command: /<>/obj-x86_64-linux-gnu/csg/src/csgapps/partial_rdf/csg_partial_rdf "--help" 132: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/csgapps 132: Test timeout computed to be: 1500 132: ================================================== 132: ======== VOTCA (http://www.votca.org) ======== 132: ================================================== 132: 132: please submit bugs to https://github.com/votca/votca/issues 132: 132: csg_partial_rdf, version 2024 (compiled Feb 29 2024, 03:52:32) 132: gromacs, 2024.2-Debian_2024.2_1 (single precision) 132: 132: Calculate spatially confined rdfs 132: 132: 132: Allowed options: 132: -h [ --help ] display this help and exit 132: --verbose be loud and noisy 132: --verbose1 be very loud and noisy 132: -v [ --verbose2 ] be extremly loud and noisy 132: --top arg atomistic topology file 132: 132: Mapping options: 132: --cg arg [OPTIONAL] coarse graining mapping and bond 132: definitions 132: (xml-file). If no file is given, program acts on 132: original trajectory 132: --map-ignore arg list of molecules to ignore if mapping is done 132: separated by ; 132: 132: Specific options: 132: --options arg options file defining the rdfs 132: --subvolume_radius arg Rdf calc. in spherical subvolume of this radius (from 132: center of box) 132: --do-vol-corr Correct for subvolume truncation in rdf 132: --write-every arg (UNIMPLEMENTED) write after every block of this 132: length, if --blocking is set, the averages are 132: cleared after every output 132: --do-blocks write output for blocking analysis 132: 132: Threading options: 132: --nt arg (=1) number of threads 132: 132: Trajectory options: 132: --trj arg atomistic trajectory file 132: --begin arg (=0) skip frames before this time (only works for 132: Gromacs files) 132: --first-frame arg (=0) start with this frame 132: --nframes arg process the given number of frames 132: 120/249 Test #132: partial_rdfHelp .................................... Passed 0.02 sec test 133 Start 133: radiiHelp 133: Test command: /<>/obj-x86_64-linux-gnu/csg/src/csgapps/radii/csg_radii "--help" 133: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/csgapps 133: Test timeout computed to be: 1500 133: ================================================== 133: ======== VOTCA (http://www.votca.org) ======== 133: ================================================== 133: 133: please submit bugs to https://github.com/votca/votca/issues 133: 133: radii, version 2024 (compiled Feb 29 2024, 03:52:32) 133: gromacs, 2024.2-Debian_2024.2_1 (single precision) 133: 133: calculate gyration- and hydrodynamic radius for a specific molecule or molecule type 133: 133: 133: Allowed options: 133: -h [ --help ] display this help and exit 133: --verbose be loud and noisy 133: --verbose1 be very loud and noisy 133: -v [ --verbose2 ] be extremly loud and noisy 133: --top arg atomistic topology file 133: 133: Molecule filter options: 133: --mol arg molecule number 133: --molname arg (=*) pattern for molecule name 133: 133: Trajectory options: 133: --trj arg atomistic trajectory file 133: --begin arg (=0) skip frames before this time (only works for 133: Gromacs files) 133: --first-frame arg (=0) start with this frame 133: --nframes arg process the given number of frames 133: 121/249 Test #133: radiiHelp .......................................... Passed 0.02 sec test 134 Start 134: sphericalorderHelp 134: Test command: /<>/obj-x86_64-linux-gnu/csg/src/csgapps/sphericalorder/csg_sphericalorder "--help" 134: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/csgapps 134: Test timeout computed to be: 1500 134: ================================================== 134: ======== VOTCA (http://www.votca.org) ======== 134: ================================================== 134: 134: please submit bugs to https://github.com/votca/votca/issues 134: 134: sphericalorder, version 2024 (compiled Feb 29 2024, 03:52:32) 134: gromacs, 2024.2-Debian_2024.2_1 (single precision) 134: 134: !! EXPERIMENTAL !! Calculate spherical order parameter. 134: Needs non-spherical beads in mapping. 134: 134: 134: 134: 134: Allowed options: 134: -h [ --help ] display this help and exit 134: --verbose be loud and noisy 134: --verbose1 be very loud and noisy 134: -v [ --verbose2 ] be extremly loud and noisy 134: --top arg atomistic topology file 134: --filter arg (=*) filter molecule names 134: --radialcut arg (=0) radial cutoff: distance from center where bead is 134: considered 134: --minrad arg (=0) minimal distance a parcle has to be apart from center 134: to be considerd 134: --refmol arg Reference molecule 134: --rbinw arg (=0) Do multiple r_bins multiple histograms 134: 134: Mapping options: 134: --cg arg coarse graining mapping and bond definitions 134: (xml-file) 134: --map-ignore arg list of molecules to ignore separated by ; 134: --no-map disable mapping and act on original trajectory 134: 134: Trajectory options: 134: --trj arg atomistic trajectory file 134: --begin arg (=0) skip frames before this time (only works for 134: Gromacs files) 134: --first-frame arg (=0) start with this frame 134: --nframes arg process the given number of frames 134: 122/249 Test #134: sphericalorderHelp ................................. Passed 0.02 sec test 135 Start 135: traj_forceHelp 135: Test command: /<>/obj-x86_64-linux-gnu/csg/src/csgapps/traj_force/csg_traj_force "--help" 135: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/csgapps 135: Test timeout computed to be: 1500 135: ================================================== 135: ======== VOTCA (http://www.votca.org) ======== 135: ================================================== 135: 135: please submit bugs to https://github.com/votca/votca/issues 135: 135: traj_force, version 2024 (compiled Feb 29 2024, 03:52:32) 135: gromacs, 2024.2-Debian_2024.2_1 (single precision) 135: 135: Adds/subtracts forces from given atomistic trajectories 135: 135: 135: Allowed options: 135: -h [ --help ] display this help and exit 135: --verbose be loud and noisy 135: --verbose1 be very loud and noisy 135: -v [ --verbose2 ] be extremly loud and noisy 135: --top arg atomistic topology file 135: --scale arg (=-1) scaling factor for trajectory forces 135: --trj-force arg atomistic reference trajectory containing forces to 135: add/subtract 135: --out arg output trajectory file with resultant forces 135: 135: Trajectory options: 135: --trj arg atomistic trajectory file 135: --begin arg (=0) skip frames before this time (only works for 135: Gromacs files) 135: --first-frame arg (=0) start with this frame 135: --nframes arg process the given number of frames 135: 123/249 Test #135: traj_forceHelp ..................................... Passed 0.03 sec test 136 Start 136: unit_test_bead 136: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_bead 136: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 136: Test timeout computed to be: 1500 136: Running 3 test cases... 136: 136: *** No errors detected 136:  124/249 Test #136: unit_test_bead ..................................... Passed 0.04 sec test 137 Start 137: unit_test_beadtriple 137: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_beadtriple 137: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 137: Test timeout computed to be: 1500 137: Running 1 test case... 137: 137: *** No errors detected 137:  125/249 Test #137: unit_test_beadtriple ............................... Passed 0.02 sec test 138 Start 138: unit_test_basebead 138: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_basebead 138: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 138: Test timeout computed to be: 1500 138: Running 2 test cases... 138: 138: *** No errors detected 138:  126/249 Test #138: unit_test_basebead ................................. Passed 0.02 sec test 139 Start 139: unit_test_beadmotif_algorithms 139: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_beadmotif_algorithms 139: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 139: Test timeout computed to be: 1500 139: Running 4 test cases... 139: 139: *** No errors detected 139:  127/249 Test #139: unit_test_beadmotif_algorithms ..................... Passed 0.04 sec test 140 Start 140: unit_test_beadmotif_base 140: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_beadmotif_base 140: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 140: Test timeout computed to be: 1500 140: Running 4 test cases... 140: 140: *** No errors detected 140:  128/249 Test #140: unit_test_beadmotif_base ........................... Passed 0.04 sec test 141 Start 141: unit_test_beadmotif_connector 141: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_beadmotif_connector 141: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 141: Test timeout computed to be: 1500 141: Running 3 test cases... 141: 141: *** No errors detected 141:  129/249 Test #141: unit_test_beadmotif_connector ...................... Passed 0.04 sec test 142 Start 142: unit_test_beadstructure_base 142: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_beadstructure_base 142: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 142: Test timeout computed to be: 1500 142: Running 10 test cases... 142: 142: *** No errors detected 142:  130/249 Test #142: unit_test_beadstructure_base ....................... Passed 0.04 sec test 143 Start 143: unit_test_beadstructure_algorithms 143: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_beadstructure_algorithms 143: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 143: Test timeout computed to be: 1500 143: Running 1 test case... 143: Calling break into structures 143: Bead Count 1 3 143: Bead Count 2 5 143: 143: *** No errors detected 143:  131/249 Test #143: unit_test_beadstructure_algorithms ................. Passed 0.04 sec test 144 Start 144: unit_test_bondedstatistics 144: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_bondedstatistics 144: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 144: Test timeout computed to be: 1500 144: Running 3 test cases... 144: 144: *** No errors detected 144:  132/249 Test #144: unit_test_bondedstatistics ......................... Passed 0.04 sec test 145 Start 145: unit_test_csg_topology 145: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_csg_topology 145: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 145: Test timeout computed to be: 1500 145: Running 6 test cases... 145: interaction name :bond 145: interaction name :bond 145: 145: *** No errors detected 145:  133/249 Test #145: unit_test_csg_topology ............................. Passed 0.02 sec test 146 Start 146: unit_test_interaction 146: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_interaction 146: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 146: Test timeout computed to be: 1500 146: Running 5 test cases... 146: molecule 1:large 1:index 1 146: molecule 1:medium 1:index 1 146: molecule 1:small 1:index 1 146: 146: *** No errors detected 146:  134/249 Test #146: unit_test_interaction .............................. Passed 0.04 sec test 147 Start 147: unit_test_lammpsdatareader 147: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_lammpsdatareader 147: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 147: Test timeout computed to be: 1500 147: Running 3 test cases... 147: 147: WARNING: The votca lammps data reader is only able to read lammps files formatted in the following styles: 147: angle 147: atom 147: bond 147: full 147: molecule 147: 147: These styles use the following formats in the atom block: 147: atom-ID molecule-ID atom-type charge x y z 147: atom-ID molecule-ID atom-type charge x y z nx ny nz 147: atom-ID molecule-ID atom-type x y z 147: atom-ID molecule-ID atom-type x y z nx ny nz 147: atom-ID atom-type x y z 147: atom-ID atom-type x y z nx ny nz 147: 147: 147: WARNING: The votca lammps data reader is only able to read lammps files formatted in the following styles: 147: angle 147: atom 147: bond 147: full 147: molecule 147: 147: These styles use the following formats in the atom block: 147: atom-ID molecule-ID atom-type charge x y z 147: atom-ID molecule-ID atom-type charge x y z nx ny nz 147: atom-ID molecule-ID atom-type x y z 147: atom-ID molecule-ID atom-type x y z nx ny nz 147: atom-ID atom-type x y z 147: atom-ID atom-type x y z nx ny nz 147: 147: 6.57991 147: 5.10424 147: 5.84802 147: 6.57991 147: 5.10424 147: 5.84802 147: 10.8431 147: 8.3947 147: 6.85254 147: 10.8431 147: 8.3947 147: 6.85254 147: 147: WARNING: The votca lammps data reader is only able to read lammps files formatted in the following styles: 147: angle 147: atom 147: bond 147: full 147: molecule 147: 147: These styles use the following formats in the atom block: 147: atom-ID molecule-ID atom-type charge x y z 147: atom-ID molecule-ID atom-type charge x y z nx ny nz 147: atom-ID molecule-ID atom-type x y z 147: atom-ID molecule-ID atom-type x y z nx ny nz 147: atom-ID atom-type x y z 147: atom-ID atom-type x y z nx ny nz 147: 147: WARNING: Lammps Atoms 1 and 6 belong to different molecules (1:2) 147: WARNING: Lammps Atoms 0 and 5 belong to different molecules (1:2) 147: WARNING: Lammps Atoms -1 and 4 belong to different molecules (1:2) 147: 147: WARNING: The votca lammps data reader is only able to read lammps files formatted in the following styles: 147: angle 147: atom 147: bond 147: full 147: molecule 147: 147: These styles use the following formats in the atom block: 147: atom-ID molecule-ID atom-type charge x y z 147: atom-ID molecule-ID atom-type charge x y z nx ny nz 147: atom-ID molecule-ID atom-type x y z 147: atom-ID molecule-ID atom-type x y z nx ny nz 147: atom-ID atom-type x y z 147: atom-ID atom-type x y z nx ny nz 147: 147: 147: *** No errors detected 147:  135/249 Test #147: unit_test_lammpsdatareader ......................... Passed 0.04 sec test 148 Start 148: unit_test_lammpsdumpreaderwriter 148: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_lammpsdumpreaderwriter 148: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 148: Test timeout computed to be: 1500 103: Number of degrees of freedom in T-Coupling group System is 15.00 103: 103: There were 2 NOTEs 148: Running 2 test cases... 148: Reading frame, timestep 1 148: Reading frame, timestep 1 148: 148: *** No errors detected 148:  136/249 Test #148: unit_test_lammpsdumpreaderwriter ................... Passed 0.02 sec test 149 Start 149: unit_test_nblist_3body 149: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_nblist_3body 149: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 149: Test timeout computed to be: 1500 149: Running 2 test cases... 149: 149: *** No errors detected 149:  137/249 Test #149: unit_test_nblist_3body ............................. Passed 0.02 sec test 150 Start 150: unit_test_nblistgrid_3body 150: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_nblistgrid_3body 150: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 150: Test timeout computed to be: 1500 150: Running 2 test cases... 150: 150: *** No errors detected 150:  138/249 Test #150: unit_test_nblistgrid_3body ......................... Passed 0.02 sec test 151 Start 151: unit_test_boundarycondition 151: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_boundarycondition 151: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 151: Test timeout computed to be: 1500 151: Running 3 test cases... 151: 151: *** No errors detected 151:  139/249 Test #151: unit_test_boundarycondition ........................ Passed 0.02 sec test 152 Start 152: unit_test_pdbreader 152: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_pdbreader 152: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 152: Test timeout computed to be: 1500 152: Running 1 test case... 152: The VOTCA pdb reader attempts to follow the official format: 152: http://www.wwpdb.org/documentation/file-format 152: 152: NOTE the element symbol is important for associating a mass with 152: each atom, if no element symbol is specified the atom name will be 152: used and assumed to be an element symbol. 152: The pdb file format does not support pseudo atoms such as a CH3 152: and thus VOTCA cannot read such atoms in when using a .pdb file. 152: If you need to use pseudo atoms consider using a different file 152: format such as the lammps data format. 152: WARNING no charge was specified for 152: HETATM 1 C UNL 1 -5.249 1.055 -0.000 1.00 0.00 C 152: Assuming a charge of 0 152: WARNING no charge was specified for 152: HETATM 2 H UNL 1 -6.202 1.521 -0.141 1.00 0.00 H 152: Assuming a charge of 0 152: WARNING no charge was specified for 152: HETATM 3 H UNL 1 -5.390 0.026 0.255 1.00 0.00 H 152: Assuming a charge of 0 152: WARNING no charge was specified for 152: HETATM 4 H UNL 1 -4.682 1.124 -0.904 1.00 0.00 H 152: Assuming a charge of 0 152: WARNING no charge was specified for 152: HETATM 5 H UNL 1 -4.724 1.550 0.790 1.00 0.00 H 152: Assuming a charge of 0 152: WARNING no charge was specified for 152: HETATM 6 C UNL 2 -2.248 1.671 -0.000 1.00 0.00 C 152: Assuming a charge of 0 152: WARNING no charge was specified for 152: HETATM 7 H UNL 2 -1.518 2.451 0.051 1.00 0.00 H 152: Assuming a charge of 0 152: WARNING no charge was specified for 152: HETATM 8 H UNL 2 -3.153 1.999 0.467 1.00 0.00 H 152: Assuming a charge of 0 152: WARNING no charge was specified for 152: HETATM 9 H UNL 2 -2.442 1.430 -1.024 1.00 0.00 H 152: Assuming a charge of 0 152: WARNING no charge was specified for 152: HETATM 10 H UNL 2 -1.880 0.804 0.507 1.00 0.00 H 152: Assuming a charge of 0 152: Consistency check for pdbreader 152: Molecule 0 152: Atoms: 6 7 8 9 10 152: Molecule 1 152: Atoms: 1 2 3 4 5 152: 152: 152: *** No errors detected 152:  140/249 Test #152: unit_test_pdbreader ................................ Passed 0.02 sec test 153 Start 153: unit_test_tabulatedpotential 153: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_tabulatedpotential 153: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 153: Test timeout computed to be: 1500 153: Running 3 test cases... 153: Number of H2 96 153: bonded_values after pulling out of statistics 4560 153: histogram created using 4560 data-rows, written to file_interactions.txt 103: 103: GROMACS reminds you: "I'll Match Your DNA" (Red Hot Chili Peppers) 103: 103: Setting the LD random seed to -277483523 103: 103: Generated 330891 of the 330891 non-bonded parameter combinations 103: 103: Generated 330891 of the 330891 1-4 parameter combinations 103: 103: Excluding 2 bonded neighbours molecule type 'SOL' 103: Analysing residue names: 103: There are: 3 Water residues 103: 103: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 103: 103: Calculated rlist for 1x1 atom pair-list as 0.900 nm, buffer size 0.000 nm 103: 103: Set rlist, assuming 4x4 atom pair-list, to 0.900 nm, buffer size 0.000 nm 103: 103: Note that mdrun will redetermine rlist based on the actual pair-list setup 103: 103: This run will generate roughly 0 Mb of data 141/249 Test #103: integration_Run_gmx_grompp ......................... Passed 6.52 sec test 110 Start 110: integration_Run_gmx_mdrun 110: Test command: /usr/bin/gmx_d "mdrun" 110: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 110: Test timeout computed to be: 1500 110: :-) GROMACS - gmx mdrun, 2024.2-Debian_2024.2_1 (double precision) (-: 110: 110: Executable: /usr/bin/gmx_d 110: Data prefix: /usr 110: Working dir: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 110: Command line: 110: gmx_d mdrun 110: 110: Compiled SIMD is SSE4.1, but AVX2_256 might be faster (see log). 110: Reading file topol.tpr, VERSION 2024.2-Debian_2024.2_1 (double precision) 110: 110: NOTE: Parallelization is limited by the small number of atoms, 110: only starting 1 thread-MPI ranks. 110: You can use the -nt and/or -ntmpi option to optimize the number of threads. 110: 110: Using 1 MPI thread 110: Using 2 OpenMP threads 110: 110: starting mdrun 'Flex water' 110: 1 steps, 0.0 ps. 110: 110: Writing final coordinates. 110: 110: NOTE: 21 % of the run time was spent in pair search, 110: you might want to increase nstlist (this has no effect on accuracy) 110: 110: Core t (s) Wall t (s) (%) 110: Time: 0.040 0.020 199.7 110: (ns/day) (hour/ns) 110: Performance: 17.470 1.374 110: 110: GROMACS reminds you: "I'll Match Your DNA" (Red Hot Chili Peppers) 110: 142/249 Test #110: integration_Run_gmx_mdrun .......................... Passed 0.10 sec test 104 Start 104: integration_Run_csg_dump_gmx_tpr 104: Test command: /usr/bin/bash "-c" "/<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dump --top topol.tpr > csg_dump_tpr.out" 104: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 104: Test timeout computed to be: 1500 104: Reading file topol.tpr, VERSION 2024.2-Debian_2024.2_1 (double precision) 143/249 Test #104: integration_Run_csg_dump_gmx_tpr ................... Passed 0.04 sec test 106 Start 106: integration_Run_csg_dump_gmx_tpr_excl 106: Test command: /usr/bin/bash "-c" "/<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dump --excl --top topol.tpr > csg_dump_tpr_excl.out" 106: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 106: Test timeout computed to be: 1500 106: Reading file topol.tpr, VERSION 2024.2-Debian_2024.2_1 (double precision) 144/249 Test #106: integration_Run_csg_dump_gmx_tpr_excl .............. Passed 0.05 sec test 108 Start 108: integration_Run_csg_dump_gmx_tpr_cg 108: Test command: /usr/bin/bash "-c" "/<>/obj-x86_64-linux-gnu/csg/src/tools/csg_dump --cg /<>/csg/src/tools/references/spce/3mols/../mapping.xml --top topol.tpr > csg_dump_tpr_cg.out" 108: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 108: Test timeout computed to be: 1500 108: Reading file topol.tpr, VERSION 2024.2-Debian_2024.2_1 (double precision) 145/249 Test #108: integration_Run_csg_dump_gmx_tpr_cg ................ Passed 0.04 sec test 111 Start 111: integration_Run_csg_map_gmx 111: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_map "--top" "topol.tpr" "--trj" "traj.trr" "--out" "traj.gro" "--no-map" "--nframes" "1" 111: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 111: Test timeout computed to be: 1500 111: Reading file topol.tpr, VERSION 2024.2-Debian_2024.2_1 (double precision) 111: I have 9 beads in 3 molecules 111: trr version: GMX_trn_file (double precision) 111: Reading frame 0 time 0.000 111: writing coarse-grained trajectory to traj.gro 146/249 Test #111: integration_Run_csg_map_gmx ........................ Passed 0.04 sec test 113 Start 113: integration_Run_csg_map_gmx_xtc 113: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tools/csg_map "--top" "topol.tpr" "--trj" "traj_comp.xtc" "--out" "traj_comp.gro" "--no-map" "--nframes" "1" 113: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 113: Test timeout computed to be: 1500 113: Reading file topol.tpr, VERSION 2024.2-Debian_2024.2_1 (double precision) 113: I have 9 beads in 3 molecules 113: Reading frame 0 time 0.000 113: writing coarse-grained trajectory to traj_comp.gro 147/249 Test #113: integration_Run_csg_map_gmx_xtc .................... Passed 0.04 sec test 105 Start 105: integration_Compare_csg_dump_gmx_tpr_output 105: Test command: /usr/bin/cmake "-E" "compare_files" "csg_dump_tpr.out" "/<>/csg/src/tools/references/spce/3mols/csg_dump_tpr.out" 105: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 105: Test timeout computed to be: 1500 148/249 Test #105: integration_Compare_csg_dump_gmx_tpr_output ........ Passed 0.03 sec test 107 Start 107: integration_Compare_csg_dump_gmx_tpr_excl_output 107: Test command: /usr/bin/cmake "-E" "compare_files" "csg_dump_tpr_excl.out" "/<>/csg/src/tools/references/spce/3mols/csg_dump_tpr_excl.out" 107: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 107: Test timeout computed to be: 1500 149/249 Test #107: integration_Compare_csg_dump_gmx_tpr_excl_output ... Passed 0.03 sec test 109 Start 109: integration_Compare_csg_dump_gmx_tpr_cg_output 109: Test command: /usr/bin/cmake "-E" "compare_files" "csg_dump_tpr_cg.out" "/<>/csg/src/tools/references/spce/3mols/csg_dump_tpr_cg.out" 109: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 109: Test timeout computed to be: 1500 150/249 Test #109: integration_Compare_csg_dump_gmx_tpr_cg_output ..... Passed 0.03 sec test 112 Start 112: integration_Compare_csg_map_gmx_output 112: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "traj.gro" "-f2" "/<>/csg/src/tools/references/spce/3mols/conf.gro" 112: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 112: Test timeout computed to be: 1500 112: Comparing traj.gro and /<>/csg/src/tools/references/spce/3mols/conf.gro to a tolerance of 5e-05 151/249 Test #112: integration_Compare_csg_map_gmx_output ............. Passed 0.09 sec test 114 Start 114: integration_Compare_csg_map_gmx_xtc_output 114: Test command: /<>/tools/scripts/votca_compare "--etol" "5e-5" "-f1" "traj_comp.gro" "-f2" "/<>/csg/src/tools/references/spce/3mols/conf.gro" 114: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tools/Run_gmx_3mols 114: Test timeout computed to be: 1500 114: Comparing traj_comp.gro and /<>/csg/src/tools/references/spce/3mols/conf.gro to a tolerance of 5e-05 152/249 Test #114: integration_Compare_csg_map_gmx_xtc_output ......... Passed 0.07 sec test 154 Start 154: unit_test_triplelist 154: Test command: /<>/obj-x86_64-linux-gnu/csg/src/tests/unit_test_triplelist 154: Working Directory: /<>/obj-x86_64-linux-gnu/csg/src/tests 154: Test timeout computed to be: 1500 154: Running 2 test cases... 154: 154: *** No errors detected 154:  153/249 Test #154: unit_test_triplelist ............................... Passed 0.04 sec test 155 Start 155: unit_iie.py 155: Test command: /usr/bin/python3 "-m" "pytest" "-q" "/<>/csg/share/scripts/inverse/iie.py" 155: Working Directory: /<>/obj-x86_64-linux-gnu/csg/share/scripts/inverse 155: Test timeout computed to be: 1500 153: histogram created using 4560 data-rows, written to file_interactions.txt 155: ..... [100%] 155: 5 passed in 0.25s 154/249 Test #155: unit_iie.py ........................................ Passed 0.72 sec test 156 Start 156: unit_check_csg_xml.py 156: Test command: /usr/bin/python3 "-m" "pytest" "-q" "/<>/csg/share/scripts/inverse/check_csg_xml.py" 156: Working Directory: /<>/obj-x86_64-linux-gnu/csg/share/scripts/inverse 156: Test timeout computed to be: 1500 153: histogram created using 4560 data-rows, written to file_interactions.txt 156: . [100%] 156: 1 passed in 0.05s 155/249 Test #156: unit_check_csg_xml.py .............................. Passed 0.44 sec test 157 Start 157: template_serialHelp 157: Test command: /<>/obj-x86_64-linux-gnu/csg/share/template/template_serial "--help" 157: Working Directory: /<>/obj-x86_64-linux-gnu/csg/share/template 157: Test timeout computed to be: 1500 157: ================================================== 157: ======== VOTCA (http://www.votca.org) ======== 157: ================================================== 157: 157: please submit bugs to https://github.com/votca/votca/issues 157: 157: template_nblist, version 2024 (compiled Feb 29 2024, 03:52:32) 157: gromacs, 2024.2-Debian_2024.2_1 (single precision) 157: 157: rough template for rdf calculations 157: 157: 157: Allowed options: 157: -h [ --help ] display this help and exit 157: --verbose be loud and noisy 157: --verbose1 be very loud and noisy 157: -v [ --verbose2 ] be extremly loud and noisy 157: --top arg atomistic topology file 157: 157: RDF options: 157: --c arg (=1) the cutoff 157: 157: Trajectory options: 157: --trj arg atomistic trajectory file 157: --begin arg (=0) skip frames before this time (only works for 157: Gromacs files) 157: --first-frame arg (=0) start with this frame 157: --nframes arg process the given number of frames 157: 156/249 Test #157: template_serialHelp ................................ Passed 0.04 sec test 158 Start 158: template_threadedHelp 158: Test command: /<>/obj-x86_64-linux-gnu/csg/share/template/template_threaded "--help" 158: Working Directory: /<>/obj-x86_64-linux-gnu/csg/share/template 158: Test timeout computed to be: 1500 158: ================================================== 158: ======== VOTCA (http://www.votca.org) ======== 158: ================================================== 158: 158: please submit bugs to https://github.com/votca/votca/issues 158: 158: template_threaded_rdf, version 2024 (compiled Feb 29 2024, 03:52:32) 158: gromacs, 2024.2-Debian_2024.2_1 (single precision) 158: 158: template for threaded rdf calculations 158: 158: 158: Allowed options: 158: -h [ --help ] display this help and exit 158: --verbose be loud and noisy 158: --verbose1 be very loud and noisy 158: -v [ --verbose2 ] be extremly loud and noisy 158: --top arg atomistic topology file 158: 158: RDF options: 158: --c arg (=1) the cutoff 158: 158: Threading options: 158: --nt arg (=1) number of threads 158: 158: Trajectory options: 158: --trj arg atomistic trajectory file 158: --begin arg (=0) skip frames before this time (only works for 158: Gromacs files) 158: --first-frame arg (=0) start with this frame 158: --nframes arg process the given number of frames 158: 157/249 Test #158: template_threadedHelp .............................. Passed 0.04 sec test 159 Start 159: integration_xtp_mapHelp 159: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tools/xtp_map "--help" 159: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tools 159: Test timeout computed to be: 1500 159: ================================================== 159: ======== VOTCA (http://www.votca.org) ======== 159: ================================================== 159: 159: please submit bugs to https://github.com/votca/votca/issues 159: 159: xtp_map, version 2024 (compiled Feb 29 2024, 03:52:32) 159: 159: Generates QM|MD topology 159: 159: 159: 159: Allowed options: 159: -h [ --help ] display this help and exit 159: --verbose be loud and noisy 159: --verbose1 be very loud and noisy 159: -v [ --verbose2 ] be extremly loud and noisy 159: -t [ --topology ] arg topology 159: -c [ --coordinates ] arg coordinates or trajectory 159: -s [ --segments ] arg definition of segments and fragments 159: -m [ --makesegments ] write out a skeleton segments file 159: -f [ --file ] arg state file 159: -i [ --first-frame ] arg (=0) start from this frame 159: -b [ --begin ] arg (=0) start time in simulation 159: -n [ --nframes ] arg (=1) number of frames to process 159: 158/249 Test #159: integration_xtp_mapHelp ............................ Passed 0.05 sec test 160 Start 160: integration_xtp_runHelp 160: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tools/xtp_run "--help" 160: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tools 160: Test timeout computed to be: 1500 160: ================================================== 160: ======== VOTCA (http://www.votca.org) ======== 160: ================================================== 160: 160: please submit bugs to https://github.com/votca/votca/issues 160: 160: xtp_run, version 2024 (compiled Feb 29 2024, 03:52:32) 160: 160: Runs excitation/charge transport calculators 160: 160: 160: 160: Allowed options: 160: -h [ --help ] display this help and exit 160: --verbose be loud and noisy 160: --verbose1 be very loud and noisy 160: -v [ --verbose2 ] be extremly loud and noisy 160: -o [ --options ] arg Calculator user options. 160: -t [ --nthreads ] arg (=1) number of threads to create 160: -e [ --execute ] arg Name of Calculator to run 160: -l [ --list ] Lists all available Calculators 160: -d [ --description ] arg Short description of a Calculators 160: -c [ --cmdoptions ] arg Modify options via command line by e.g. '-c 160: xmltag.subtag=value'. Use whitespace to 160: separate multiple options 160: -p [ --printoptions ] arg Prints xml options of a Calculator 160: -f [ --file ] arg hdf5 state file, *.hdf5 160: -i [ --first-frame ] arg (=0) start from this frame 160: -n [ --nframes ] arg (=1) number of frames to process 160: -s [ --save ] arg (=1) whether or not to save changes to state file 160: 159/249 Test #160: integration_xtp_runHelp ............................ Passed 0.05 sec test 161 Start 161: integration_xtp_toolsHelp 161: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tools/xtp_tools "--help" 161: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tools 161: Test timeout computed to be: 1500 161: ================================================== 161: ======== VOTCA (http://www.votca.org) ======== 161: ================================================== 161: 161: please submit bugs to https://github.com/votca/votca/issues 161: 161: xtp_tools, version 2024 (compiled Feb 29 2024, 03:52:32) 161: 161: Runs excitation/charge transport tools 161: 161: 161: 161: Allowed options: 161: -h [ --help ] display this help and exit 161: --verbose be loud and noisy 161: --verbose1 be very loud and noisy 161: -v [ --verbose2 ] be extremly loud and noisy 161: -o [ --options ] arg Tool user options. 161: -t [ --nthreads ] arg (=1) number of threads to create 161: -e [ --execute ] arg Name of Tool to run 161: -l [ --list ] Lists all available Tools 161: -d [ --description ] arg Short description of a Tools 161: -c [ --cmdoptions ] arg Modify options via command line by e.g. '-c 161: xmltag.subtag=value'. Use whitespace to separate 161: multiple options 161: -p [ --printoptions ] arg Prints xml options of a Tool 161: 160/249 Test #161: integration_xtp_toolsHelp .......................... Passed 0.05 sec test 162 Start 162: integration_xtp_parallelHelp 162: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tools/xtp_parallel "--help" 162: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tools 162: Test timeout computed to be: 1500 162: ================================================== 162: ======== VOTCA (http://www.votca.org) ======== 162: ================================================== 162: 162: please submit bugs to https://github.com/votca/votca/issues 162: 162: xtp_parallel, version 2024 (compiled Feb 29 2024, 03:52:32) 162: 162: Runs job-based heavy-duty calculators 162: 162: 162: 162: Allowed options: 162: -h [ --help ] display this help and exit 162: --verbose be loud and noisy 162: --verbose1 be very loud and noisy 162: -v [ --verbose2 ] be extremly loud and noisy 162: -o [ --options ] arg Calculator user options. 162: -t [ --nthreads ] arg (=1) number of threads to create 162: -e [ --execute ] arg Name of Calculator to run 162: -l [ --list ] Lists all available Calculators 162: -d [ --description ] arg Short description of a Calculators 162: -c [ --cmdoptions ] arg Modify options via command line by e.g. '-c 162: xmltag.subtag=value'. Use whitespace to 162: separate multiple options 162: -p [ --printoptions ] arg Prints xml options of a Calculator 162: -f [ --file ] arg hdf5 state file, *.hdf5 162: -i [ --first-frame ] arg (=0) start from this frame 162: -n [ --nframes ] arg (=1) number of frames to process 162: -s [ --save ] arg (=1) whether or not to save changes to state file 162: -x [ --ompthreads ] arg (=1) number of openmp threads to create in each 162: thread 162: -r [ --restart ] arg restart pattern: 'host(pc1:234) 162: stat(FAILED)' 162: -q [ --cache ] arg (=8) assigns jobs in blocks of this size 162: -j [ --jobs ] arg (=run) task(s) to perform: write, run, read 162: -m [ --maxjobs ] arg (=-1) maximum number of jobs to process (-1 = inf) 162: 161/249 Test #162: integration_xtp_parallelHelp ....................... Passed 0.05 sec test 163 Start 163: unit_test_adiis 163: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_adiis 163: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_adiis 163: Test timeout computed to be: 1500 163: Running 1 test case... 163: 163: *** No errors detected 163:  162/249 Test #163: unit_test_adiis .................................... Passed 0.06 sec test 164 Start 164: unit_test_aobasis 164: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_aobasis 164: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_aobasis 164: Test timeout computed to be: 1500 164: Running 3 test cases... 164: 164: *** No errors detected 164:  163/249 Test #164: unit_test_aobasis .................................. Passed 0.11 sec test 165 Start 165: unit_test_aomatrix 165: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_aomatrix 165: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_aomatrix 165: Test timeout computed to be: 1500 165: Running 3 test cases... 165: 165: *** No errors detected 165:  164/249 Test #165: unit_test_aomatrix ................................. Passed 0.11 sec test 166 Start 166: unit_test_aomatrix3d 166: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_aomatrix3d 166: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_aomatrix3d 166: Test timeout computed to be: 1500 166: Running 2 test cases... 166: 166: *** No errors detected 166:  165/249 Test #166: unit_test_aomatrix3d ............................... Passed 0.09 sec test 167 Start 167: unit_test_aotransform 167: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_aotransform 167: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_aotransform 167: Test timeout computed to be: 1500 167: Running 2 test cases... 167: 167: *** No errors detected 167:  166/249 Test #167: unit_test_aotransform .............................. Passed 0.05 sec test 168 Start 168: unit_test_aopotential 168: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_aopotential 168: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_aopotential 168: Test timeout computed to be: 1500 153: histogram created using 4560 data-rows, written to file_interactions.txt 168: Running 3 test cases... 168: 168: *** No errors detected 168:  167/249 Test #168: unit_test_aopotential .............................. Passed 0.31 sec test 169 Start 169: unit_test_atom 169: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_atom 169: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_atom 169: Test timeout computed to be: 1500 169: Running 3 test cases... 169: 169: *** No errors detected 169:  168/249 Test #169: unit_test_atom ..................................... Passed 0.06 sec test 170 Start 170: unit_test_qmatom 170: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_qmatom 170: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_qmatom 170: Test timeout computed to be: 1500 170: Running 2 test cases... 170: 170: *** No errors detected 170:  169/249 Test #170: unit_test_qmatom ................................... Passed 0.05 sec test 171 Start 171: unit_test_polarsegment 171: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_polarsegment 171: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_polarsegment 171: Test timeout computed to be: 1500 171: Running 5 test cases... 171: 171: *** No errors detected 171:  170/249 Test #171: unit_test_polarsegment ............................. Passed 0.06 sec test 172 Start 172: unit_test_qmmolecule 172: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_qmmolecule 172: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_qmmolecule 172: Test timeout computed to be: 1500 172: Running 3 test cases... 172: 172: *** No errors detected 172:  171/249 Test #172: unit_test_qmmolecule ............................... Passed 0.06 sec test 173 Start 173: unit_test_basisset 173: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_basisset 173: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_basisset 173: Test timeout computed to be: 1500 173: Running 1 test case... 173: 173: *** No errors detected 173:  172/249 Test #173: unit_test_basisset ................................. Passed 0.05 sec test 174 Start 174: unit_test_bseoperator_btda 174: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_bseoperator_btda 174: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_bseoperator_btda 174: Test timeout computed to be: 1500 174: Running 1 test case... 174: 174: *** No errors detected 174:  173/249 Test #174: unit_test_bseoperator_btda ......................... Passed 0.05 sec test 175 Start 175: unit_test_bfgs_trm 175: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_bfgs_trm 175: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_bfgs_trm 175: Test timeout computed to be: 1500 175: Running 3 test cases... 175: 7 175: 12 175: 14 175: 175: *** No errors detected 175:  174/249 Test #175: unit_test_bfgs_trm ................................. Passed 0.05 sec test 176 Start 176: unit_test_bse 176: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_bse 176: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_bse 176: Test timeout computed to be: 1500 176: Running 1 test case... 176: 176: *** No errors detected 176:  175/249 Test #176: unit_test_bse ...................................... Passed 0.22 sec test 177 Start 177: unit_test_convergenceacc 177: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_convergenceacc 177: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_convergenceacc 177: Test timeout computed to be: 1500 177: Running 1 test case... 177: result mos 177: 0.996559 0.223082 -1.78969e-15 -4.95242e-15 -2.02391e-15 1.17866e-16 -1.65232e-16 -3.72532e-16 -0.0301914 -6.32849e-16 -3.89012e-16 5.80048e-17 0.102052 -1.34372e-14 -8.16187e-16 2.76341e-15 -0.111923 177: 0.0445146 -0.88316 4.1165e-15 2.02043e-14 1.22432e-14 -7.04238e-15 -5.7801e-15 1.15186e-15 0.866126 -1.52656e-15 -3.00107e-15 -2.66193e-15 0.938329 -1.55542e-13 -1.0221e-14 3.16691e-14 -1.28767 177: -8.67362e-17 5.56499e-15 0.37446 -0.330561 0.926584 -0.363588 -0.217484 0.166917 -2.86576e-15 -0.164008 0.377596 -0.0662099 -2.09555e-15 0.136742 0.0662301 -0.0449835 -1.8964e-14 177: -3.01408e-17 -2.28463e-15 -0.968034 0.0528839 0.410077 -0.131148 -0.105487 -0.423119 9.92262e-16 -0.13306 0.0114675 0.395 -1.5786e-15 0.0248372 0.0495455 0.148448 1.2039e-15 177: -1.65016e-16 2.70756e-14 0.175328 0.997989 0.28518 -0.240751 0.385914 -0.0215904 1.61329e-15 -0.359525 -0.176496 -0.115986 -2.56739e-16 -0.0761121 0.135156 -0.0323748 8.78811e-15 177: -0.0472716 -0.235837 6.50174e-15 4.13558e-15 -4.76008e-15 7.5313e-15 8.6875e-15 4.19109e-15 -0.599523 6.82787e-15 9.36751e-15 2.94209e-15 -1.8333 5.25635e-13 2.80886e-14 -1.06692e-13 4.24316 177: 3.20924e-16 -1.80411e-15 -0.0583844 0.0515398 -0.14447 0.306245 0.183184 -0.140591 9.99201e-16 0.727736 -1.67547 0.293787 6.75848e-15 -0.879016 -0.425745 0.289166 1.23734e-13 177: 1.78677e-16 -5.27356e-16 0.150932 -0.00824546 -0.0639377 0.110464 0.0888506 0.356387 -1.06304e-14 0.590413 -0.0508834 -1.7527 3.6221e-15 -0.15966 -0.318492 -0.954262 -3.02536e-15 177: 5.74193e-16 -7.16094e-15 -0.0273365 -0.155603 -0.0444642 0.202781 -0.32505 0.0181852 -1.2268e-14 1.59528 0.783148 0.514651 2.13718e-15 0.489269 -0.868821 0.208114 -5.45397e-14 177: 0.00106227 -0.0237672 -0.00117273 0.0020197 0.00454752 0.686779 -0.0587743 0.259396 -0.343823 -0.481503 0.155884 0.156057 0.600309 -0.232789 -0.683467 -0.193627 0.0554949 177: 0.00928842 0.0414346 -0.0210154 0.0361931 0.0814917 -0.00261598 0.000223875 -0.000988053 -0.0301047 -0.811432 0.262697 0.262989 -0.0095153 0.657754 1.93116 0.547103 -1.24406 177: 0.00106227 -0.0237672 -0.00425586 -0.00172314 -0.00224787 -0.441854 0.255777 0.5308 -0.343823 0.286348 -0.139065 0.423278 0.600309 0.0974898 0.413571 -0.615031 0.0554949 177: 0.00928842 0.0414346 -0.0762651 -0.0308786 -0.0402819 0.00168305 -0.00097427 -0.00202185 -0.0301047 0.482555 -0.234353 0.713312 -0.0095153 -0.275462 -1.16856 1.7378 -1.24406 177: 0.00106227 -0.0237672 0.00215594 0.00357687 -0.00294828 -0.237165 -0.66194 -0.219075 -0.343823 -0.0458021 -0.414745 -0.32617 0.600309 0.647404 -0.0527871 0.369987 0.0554949 177: 0.00928842 0.0414346 0.0386346 0.0640976 -0.0528332 0.000903374 0.00252137 0.000834468 -0.0301047 -0.077186 -0.698932 -0.549664 -0.0095153 -1.82927 0.149152 -1.04541 -1.24406 177: 0.00106227 -0.0237672 0.00327265 -0.00387344 0.000648625 -0.00775959 0.464937 -0.571121 -0.343823 0.240957 0.397926 -0.253165 0.600309 -0.512105 0.322683 0.438672 0.0554949 177: 0.00928842 0.0414346 0.0586459 -0.0694121 0.0116234 2.95567e-05 -0.00177097 0.00217543 -0.0301047 0.406063 0.670589 -0.426636 -0.0095153 1.44697 -0.911754 -1.23949 -1.24406 177: ref mos 177: -0.996559 -0.223082 4.81443e-15 2.21045e-15 -6.16146e-17 -3.16966e-16 5.46703e-18 -1.09681e-15 -0.0301914 6.45993e-16 1.05377e-16 3.41154e-16 -0.102052 -5.79826e-16 9.38593e-16 -4.69346e-15 -0.111923 177: -0.0445146 0.88316 -1.94941e-14 -8.67388e-15 -7.26679e-16 1.16326e-14 -3.35886e-15 2.37877e-14 0.866126 3.2068e-15 3.80914e-15 3.24563e-15 -0.938329 -6.4404e-15 1.10811e-14 -5.5056e-14 -1.28767 177: 8.15798e-17 2.30849e-14 1.04169 0.117804 0.0951759 0.179467 0.147031 0.39183 -1.02927e-14 0.32699 -0.223689 -0.130009 1.0375e-15 -0.0940179 0.126956 0.0122904 1.41709e-15 177: 4.60157e-17 -7.1203e-15 0.143338 -0.980459 -0.355251 0.41611 -0.10826 -0.149964 2.41546e-16 0.12214 -0.0512447 0.39537 1.1054e-15 -0.0996828 -0.0636092 -0.105478 5.10746e-15 177: -5.25872e-18 4.8424e-15 0.0488925 0.364515 -0.9863 0.0447336 0.417155 -0.177023 5.76117e-15 -0.228081 -0.348136 0.0253377 -1.05286e-15 0.079576 0.0703157 -0.117608 5.31327e-15 177: 0.0472716 0.235837 -3.58018e-15 -1.68354e-15 2.3989e-15 -9.86879e-15 4.52519e-15 -1.6106e-14 -0.599523 -1.31237e-14 -8.63443e-15 -8.61196e-15 1.8333 2.05275e-14 -3.9562e-14 1.89874e-13 4.24316 177: -2.74184e-16 -1.53939e-15 -0.162416 -0.0183675 -0.0148395 -0.151162 -0.123842 -0.330032 1.10084e-15 -1.45092 0.992556 0.576875 -3.82954e-15 0.604373 -0.816111 -0.0790061 -8.89474e-15 177: -2.24862e-16 3.23655e-15 -0.0223487 0.152869 0.0553894 -0.350483 0.0911859 0.126313 -5.48468e-15 -0.541961 0.227383 -1.75434 -3.89443e-15 0.640788 0.408897 0.67804 -3.17156e-14 177: -2.81346e-17 -1.09423e-15 -0.00762313 -0.0568338 0.15378 -0.0376785 -0.351364 0.149104 -4.94425e-15 1.01204 1.54475 -0.112429 8.50653e-15 -0.511536 -0.452008 0.756019 -3.3547e-14 177: -0.00106227 0.0237672 0.00345981 -0.00139675 -0.00349474 -0.597906 -0.425733 -0.0605479 -0.343823 0.162103 -0.45692 0.21318 -0.600309 0.310843 -0.36406 0.574148 0.0554949 177: -0.00928842 -0.0414346 0.0619999 -0.0250297 -0.0626259 0.00227746 0.00162164 0.00023063 -0.0301047 0.273177 -0.770004 0.359253 0.0095153 -0.8783 1.02867 -1.62228 -1.24406 177: -0.00106227 0.0237672 0.00238182 0.00205737 0.00402848 0.262742 0.151145 -0.671213 -0.343823 0.317484 0.12884 -0.40386 -0.600309 0.201313 -0.327527 -0.641099 0.0554949 177: -0.00928842 -0.0414346 0.0426822 0.0368682 0.0721904 -0.0010008 -0.000575719 0.00255669 -0.0301047 0.535026 0.217123 -0.680588 0.0095153 -0.568818 0.925441 1.81145 -1.24406 177: -0.00106227 0.0237672 -0.00318563 0.0034409 -0.00203628 0.514364 -0.353326 0.391148 -0.343823 -0.496623 -0.0536813 -0.176018 -0.600309 -0.744328 -0.01898 0.0665156 0.0554949 177: -0.00928842 -0.0414346 -0.0570866 0.0616609 -0.0364902 -0.00195924 0.00134584 -0.0014899 -0.0301047 -0.836913 -0.0904642 -0.296627 0.0095153 2.10313 0.0536287 -0.187943 -1.24406 177: -0.00106227 0.0237672 -0.002656 -0.00410152 0.00150255 -0.1792 0.627913 0.340613 -0.343823 0.0170366 0.38176 0.366698 -0.600309 0.232172 0.710567 0.000435528 0.0554949 177: -0.00928842 -0.0414346 -0.0475955 -0.0734994 0.0269257 0.000682583 -0.00239176 -0.00129742 -0.0301047 0.0287103 0.643346 0.617962 0.0095153 -0.656011 -2.00774 -0.0012306 -1.24406 177: norms 177: 1 177: 1 177: 0.954951 177: 0.996401 177: 0.993462 177: proj 177: -1 2.64945e-08 2.60209e-17 -2.08167e-17 -9.04225e-17 177: 8.38315e-08 -1 2.16008e-14 1.8735e-14 2.89872e-14 177: -1.07499e-16 2.77259e-14 0.204235 -0.25123 0.925063 177: 1.70762e-18 2.08917e-14 0.917 0.256954 -0.184787 177: 2.19073e-10 -2.30681e-09 0.171264 -0.929341 -0.311578 177: 177: *** No errors detected 177:  176/249 Test #177: unit_test_convergenceacc ........................... Passed 0.10 sec test 178 Start 178: unit_test_dftcoupling 178: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_dftcoupling 178: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_dftcoupling 178: Test timeout computed to be: 1500 153: histogram created using 4560 data-rows, written to file_interactions.txt 178: Running 1 test case... 178: 178: *** No errors detected 178:  177/249 Test #178: unit_test_dftcoupling .............................. Passed 0.07 sec test 179 Start 179: unit_test_diis 179: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_diis 179: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_diis 179: Test timeout computed to be: 1500 179: Running 1 test case... 179: 179: *** No errors detected 179:  178/249 Test #179: unit_test_diis ..................................... Passed 0.05 sec test 180 Start 180: unit_test_ecpaobasis 180: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_ecpaobasis 180: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_ecpaobasis 180: Test timeout computed to be: 1500 180: Running 1 test case... 180: 180: *** No errors detected 180:  179/249 Test #180: unit_test_ecpaobasis ............................... Passed 0.11 sec test 181 Start 181: unit_test_eigen 181: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_eigen 181: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_eigen 181: Test timeout computed to be: 1500 181: Running 3 test cases... 181: 181: *** No errors detected 181:  180/249 Test #181: unit_test_eigen .................................... Passed 0.01 sec test 182 Start 182: unit_test_eris 182: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_eris 182: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_eris 182: Test timeout computed to be: 1500 182: Running 2 test cases... 182: 182: *** No errors detected 182:  181/249 Test #182: unit_test_eris ..................................... Passed 0.15 sec test 183 Start 183: unit_test_espfit 183: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_espfit 183: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_espfit 183: Test timeout computed to be: 1500 153: histogram created using 4560 data-rows, written to file_interactions.txt 183: Running 1 test case... 183: 183: *** No errors detected 183:  182/249 Test #183: unit_test_espfit ................................... Passed 0.57 sec test 184 Start 184: unit_test_glink 184: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_glink 184: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_glink 184: Test timeout computed to be: 1500 184: Running 1 test case... 184: 184: *** No errors detected 184:  183/249 Test #184: unit_test_glink .................................... Passed 0.01 sec test 185 Start 185: unit_test_hdf5 185: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_hdf5 185: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_hdf5 185: Test timeout computed to be: 1500 185: Running 7 test cases... 185: 185: *** No errors detected 185:  184/249 Test #185: unit_test_hdf5 ..................................... Passed 0.09 sec test 186 Start 186: unit_test_cubefile_writer 186: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_cubefile_writer 186: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_cubefile_writer 186: Test timeout computed to be: 1500 186: Running 1 test case... 186: 186: *** No errors detected 186:  185/249 Test #186: unit_test_cubefile_writer .......................... Passed 0.09 sec test 187 Start 187: unit_test_densityintegration 187: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_densityintegration 187: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_densityintegration 187: Test timeout computed to be: 1500 187: Running 2 test cases... 187: 187: *** No errors detected 187:  186/249 Test #187: unit_test_densityintegration ....................... Passed 0.59 sec test 188 Start 188: unit_test_vxc_potential 188: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_vxc_potential 188: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_vxc_potential 188: Test timeout computed to be: 1500 153: histogram created using 4560 data-rows, written to file_interactions.txt 188: Running 1 test case... 188: 188: *** No errors detected 188:  187/249 Test #188: unit_test_vxc_potential ............................ Passed 0.39 sec test 189 Start 189: unit_test_vxc_grid 189: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_vxc_grid 189: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_vxc_grid 189: Test timeout computed to be: 1500 189: Running 1 test case... 189: 189: *** No errors detected 189:  188/249 Test #189: unit_test_vxc_grid ................................. Passed 0.16 sec test 190 Start 190: unit_test_regular_grid 190: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_regular_grid 190: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_regular_grid 190: Test timeout computed to be: 1500 190: Running 2 test cases... 190: 190: *** No errors detected 190:  189/249 Test #190: unit_test_regular_grid ............................. Passed 0.09 sec test 191 Start 191: unit_test_orbitals 191: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_orbitals 191: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_orbitals 191: Test timeout computed to be: 1500 191: Running 5 test cases... 191: 191: *** No errors detected 191:  190/249 Test #191: unit_test_orbitals ................................. Passed 0.09 sec test 192 Start 192: unit_test_polarsite 192: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_polarsite 192: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_polarsite 192: Test timeout computed to be: 1500 192: Running 5 test cases... 192: 192: *** No errors detected 192:  191/249 Test #192: unit_test_polarsite ................................ Passed 0.06 sec test 193 Start 193: unit_test_staticsite 193: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_staticsite 193: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_staticsite 193: Test timeout computed to be: 1500 193: Running 6 test cases... 193: 193: *** No errors detected 193:  192/249 Test #193: unit_test_staticsite ............................... Passed 0.06 sec test 194 Start 194: unit_test_ppm 194: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_ppm 194: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_ppm 194: Test timeout computed to be: 1500 194: Running 1 test case... 194: 194: *** No errors detected 194:  193/249 Test #194: unit_test_ppm ...................................... Passed 0.14 sec test 195 Start 195: unit_test_qmnblist 195: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_qmnblist 195: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_qmnblist 195: Test timeout computed to be: 1500 195: Running 2 test cases... 195: 195: *** No errors detected 195:  194/249 Test #195: unit_test_qmnblist ................................. Passed 0.05 sec test 196 Start 196: unit_test_qmpair 196: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_qmpair 196: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_qmpair 196: Test timeout computed to be: 1500 196: Running 1 test case... 196: 196: *** No errors detected 196:  195/249 Test #196: unit_test_qmpair ................................... Passed 0.06 sec test 197 Start 197: unit_test_qmstate 197: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_qmstate 197: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_qmstate 197: Test timeout computed to be: 1500 153: histogram created using 4560 data-rows, written to file_interactions.txt 153: 153: *** No errors detected 153:  196/249 Test #153: unit_test_tabulatedpotential ....................... Passed 7.16 sec test 198 Start 198: unit_test_radial_euler_maclaurin_rule 198: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_radial_euler_maclaurin_rule 198: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_radial_euler_maclaurin_rule 198: Test timeout computed to be: 1500 197: Running 2 test cases... 197: 197: *** No errors detected 197:  197/249 Test #197: unit_test_qmstate .................................. Passed 0.06 sec test 199 Start 199: unit_test_rpa 199: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_rpa 199: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_rpa 199: Test timeout computed to be: 1500 198: Running 1 test case... 198: 198: *** No errors detected 198:  198/249 Test #198: unit_test_radial_euler_maclaurin_rule .............. Passed 0.06 sec test 200 Start 200: unit_test_rpa_h2p 200: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_rpa_h2p 200: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_rpa_h2p 200: Test timeout computed to be: 1500 199: Running 2 test cases... 199: 199: *** No errors detected 199:  199/249 Test #199: unit_test_rpa ...................................... Passed 0.11 sec test 201 Start 201: unit_test_segment 201: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_segment 201: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_segment 201: Test timeout computed to be: 1500 200: Running 1 test case... 200: 200: *** No errors detected 200:  200/249 Test #200: unit_test_rpa_h2p .................................. Passed 0.08 sec test 202 Start 202: unit_test_aoshell 202: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_aoshell 202: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_aoshell 202: Test timeout computed to be: 1500 201: Running 2 test cases... 201: 201: *** No errors detected 201:  201/249 Test #201: unit_test_segment .................................. Passed 0.05 sec test 203 Start 203: unit_test_sphere_lebedev_rule 203: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_sphere_lebedev_rule 203: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_sphere_lebedev_rule 203: Test timeout computed to be: 1500 202: Running 1 test case... 202: 202: *** No errors detected 202:  202/249 Test #202: unit_test_aoshell .................................. Passed 0.05 sec test 204 Start 204: unit_test_statetracker 204: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_statetracker 204: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_statetracker 204: Test timeout computed to be: 1500 204: Running 2 test cases... 204: 204: *** No errors detected 204:  203/249 Test #204: unit_test_statetracker ............................. Passed 0.08 sec test 205 Start 205: unit_test_symmetric_matrix 205: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_symmetric_matrix 205: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_symmetric_matrix 205: Test timeout computed to be: 1500 203: Running 4 test cases... 203: 203: *** No errors detected 203:  204/249 Test #203: unit_test_sphere_lebedev_rule ...................... Passed 0.10 sec test 206 Start 206: unit_test_threecenter_dft 206: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_threecenter_dft 206: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_threecenter_dft 206: Test timeout computed to be: 1500 205: Running 6 test cases... 205: 205: *** No errors detected 205:  205/249 Test #205: unit_test_symmetric_matrix ......................... Passed 0.05 sec test 207 Start 207: unit_test_threecenter_gwbse 207: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_threecenter_gwbse 207: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_threecenter_gwbse 207: Test timeout computed to be: 1500 206: Running 1 test case... 206: 206: *** No errors detected 206:  206/249 Test #206: unit_test_threecenter_dft .......................... Passed 0.07 sec test 208 Start 208: unit_test_topology 208: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_topology 208: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_topology 208: Test timeout computed to be: 1500 208: Running 3 test cases... 208: 208: *** No errors detected 208:  207/249 Test #208: unit_test_topology ................................. Passed 0.05 sec test 209 Start 209: unit_test_sigma_exact 209: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_sigma_exact 209: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_sigma_exact 209: Test timeout computed to be: 1500 207: Running 1 test case... 207: 207: *** No errors detected 207:  208/249 Test #207: unit_test_threecenter_gwbse ........................ Passed 0.09 sec test 210 Start 210: unit_test_sigma_ppm 210: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_sigma_ppm 210: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_sigma_ppm 210: Test timeout computed to be: 1500 210: Running 1 test case... 210: 210: *** No errors detected 210:  209/249 Test #210: unit_test_sigma_ppm ................................ Passed 0.11 sec test 211 Start 211: unit_test_sigma_cda 211: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_sigma_cda 211: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_sigma_cda 211: Test timeout computed to be: 1500 209: Running 1 test case... 209: 209: *** No errors detected 209:  210/249 Test #209: unit_test_sigma_exact .............................. Passed 0.14 sec test 212 Start 212: unit_test_gw 212: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_gw 212: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_gw 212: Test timeout computed to be: 1500 212: Running 2 test cases... 212: 212: *** No errors detected 212:  211/249 Test #212: unit_test_gw ....................................... Passed 0.25 sec test 213 Start 213: unit_test_bse_operator 213: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_bse_operator 213: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_bse_operator 213: Test timeout computed to be: 1500 213: Running 1 test case... 213: 213: *** No errors detected 213:  212/249 Test #213: unit_test_bse_operator ............................. Passed 0.16 sec test 214 Start 214: unit_test_davidson 214: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_davidson 214: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_davidson 214: Test timeout computed to be: 1500 211: Running 1 test case... 211: 211: *** No errors detected 211:  213/249 Test #211: unit_test_sigma_cda ................................ Passed 0.79 sec test 215 Start 215: unit_test_trustregion 215: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_trustregion 215: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_trustregion 215: Test timeout computed to be: 1500 215: Running 1 test case... 215: 215: *** No errors detected 215:  214/249 Test #215: unit_test_trustregion .............................. Passed 0.05 sec test 216 Start 216: unit_test_gnode 216: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_gnode 216: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_gnode 216: Test timeout computed to be: 1500 216: Running 2 test cases... 216: 216: *** No errors detected 216:  215/249 Test #216: unit_test_gnode .................................... Passed 0.06 sec test 217 Start 217: unit_test_vc2index 217: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_vc2index 217: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_vc2index 217: Test timeout computed to be: 1500 217: Running 1 test case... 217: 217: *** No errors detected 217:  216/249 Test #217: unit_test_vc2index ................................. Passed 0.01 sec test 218 Start 218: unit_test_grid 218: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_grid 218: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_grid 218: Test timeout computed to be: 1500 214: Running 7 test cases... 214: 214: ERROR 2024-8-5 5:33:42 Davidson Solver using 2 threads. 214: ERROR 2024-8-5 5:33:42 Tolerance : 0.0001 214: ERROR 2024-8-5 5:33:42 DPR Correction 214: ERROR 2024-8-5 5:33:42 Matrix size : 400x400 214: ERROR 2024-8-5 5:33:42 iter Search Space Norm 214: ERROR 2024-8-5 5:33:42 0 20 1.63e-04 50.00% converged 214: ERROR 2024-8-5 5:33:42 1 30 1.68e-09 100.00% converged 214: ERROR 2024-8-5 5:33:42 Davidson converged after 1 iterations. 214: ERROR 2024-8-5 5:33:42----------------------------------- 214: ERROR 2024-8-5 5:33:42- Davidson ran for 0.0824092secs. 214: ERROR 2024-8-5 5:33:42----------------------------------- 218: Running 1 test case... 218: 218: *** No errors detected 218:  217/249 Test #218: unit_test_grid ..................................... Passed 0.06 sec test 219 Start 219: unit_test_segmentmapper 219: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_segmentmapper 219: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_segmentmapper 219: Test timeout computed to be: 1500 219: Running 3 test cases... 219: 219: *** No errors detected 219:  218/249 Test #219: unit_test_segmentmapper ............................ Passed 0.06 sec test 220 Start 220: unit_test_eeinteractor 220: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_eeinteractor 220: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_eeinteractor 220: Test timeout computed to be: 1500 220: Running 9 test cases... 220: 220: *** No errors detected 220:  219/249 Test #220: unit_test_eeinteractor ............................. Passed 0.08 sec test 221 Start 221: unit_test_hist 221: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_hist 221: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_hist 221: Test timeout computed to be: 1500 221: Running 1 test case... 221: 221: *** No errors detected 221:  220/249 Test #221: unit_test_hist ..................................... Passed 0.06 sec test 222 Start 222: unit_test_qmfragment 222: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_qmfragment 222: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_qmfragment 222: Test timeout computed to be: 1500 222: Running 2 test cases... 222: 222: *** No errors detected 222:  221/249 Test #222: unit_test_qmfragment ............................... Passed 0.06 sec test 223 Start 223: unit_test_jobtopology 223: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_jobtopology 223: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_jobtopology 223: Test timeout computed to be: 1500 223: Running 1 test case... 223: 223: *** No errors detected 223:  222/249 Test #223: unit_test_jobtopology .............................. Passed 0.06 sec test 224 Start 224: unit_test_dipoledipoleinteraction 224: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_dipoledipoleinteraction 224: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_dipoledipoleinteraction 224: Test timeout computed to be: 1500 224: Running 1 test case... 224: 224: *** No errors detected 224:  223/249 Test #224: unit_test_dipoledipoleinteraction .................. Passed 0.10 sec test 225 Start 225: unit_test_populationanalysis 225: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_populationanalysis 225: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_populationanalysis 225: Test timeout computed to be: 1500 214: 214: ERROR 2024-8-5 5:33:42 Davidson Solver using 2 threads. 214: ERROR 2024-8-5 5:33:42 Tolerance : 0.0001 214: ERROR 2024-8-5 5:33:42 DPR Correction 214: ERROR 2024-8-5 5:33:42 Matrix size : 240x240 214: ERROR 2024-8-5 5:33:42 iter Search Space Norm 214: ERROR 2024-8-5 5:33:42 0 10 9.85e-02 0.00% converged 214: ERROR 2024-8-5 5:33:42 1 17 1.23e-03 0.00% converged 214: ERROR 2024-8-5 5:33:42 2 24 2.34e-05 100.00% converged 214: ERROR 2024-8-5 5:33:42 Davidson converged after 2 iterations. 214: ERROR 2024-8-5 5:33:42----------------------------------- 214: ERROR 2024-8-5 5:33:42- Davidson ran for 0.124704secs. 214: ERROR 2024-8-5 5:33:42----------------------------------- 214: *** No errors detected 214:  224/249 Test #214: unit_test_davidson ................................. Passed 1.02 sec test 226 Start 226: unit_test_orca 226: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_orca 226: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_orca 226: Test timeout computed to be: 1500 225: Running 2 test cases... 225: 225: *** No errors detected 225:  225/249 Test #225: unit_test_populationanalysis ....................... Passed 0.08 sec test 227 Start 227: unit_test_dftengine 227: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_dftengine 227: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_dftengine 227: Test timeout computed to be: 1500 226: Running 5 test cases... 226: orca 226: xtp 226: 226: *** No errors detected 226:  226/249 Test #226: unit_test_orca ..................................... Passed 0.06 sec test 228 Start 228: unit_test_bsecoupling 228: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_bsecoupling 228: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_bsecoupling 228: Test timeout computed to be: 1500 228: Running 1 test case... 228: 228: *** No errors detected 228:  227/249 Test #228: unit_test_bsecoupling .............................. Passed 0.13 sec test 229 Start 229: unit_test_rate_engine 229: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_rate_engine 229: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_rate_engine 229: Test timeout computed to be: 1500 229: Running 2 test cases... 229: 229: *** No errors detected 229:  228/249 Test #229: unit_test_rate_engine .............................. Passed 0.07 sec test 230 Start 230: unit_test_DeltaQ_filter 230: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_DeltaQ_filter 230: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_DeltaQ_filter 230: Test timeout computed to be: 1500 230: Running 1 test case... 230: 230: *** No errors detected 230:  229/249 Test #230: unit_test_DeltaQ_filter ............................ Passed 0.07 sec test 231 Start 231: unit_test_oscillatorstrength_filter 231: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_oscillatorstrength_filter 231: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_oscillatorstrength_filter 231: Test timeout computed to be: 1500 231: Running 1 test case... 231: 231: *** No errors detected 231:  230/249 Test #231: unit_test_oscillatorstrength_filter ................ Passed 0.08 sec test 232 Start 232: unit_test_localisation_filter 232: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_localisation_filter 232: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_localisation_filter 232: Test timeout computed to be: 1500 232: Running 1 test case... 232: 232: *** No errors detected 232:  231/249 Test #232: unit_test_localisation_filter ...................... Passed 0.10 sec test 233 Start 233: unit_test_density_filter 233: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_density_filter 233: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_density_filter 233: Test timeout computed to be: 1500 233: Running 1 test case... 233: 233: *** No errors detected 233:  232/249 Test #233: unit_test_density_filter ........................... Passed 0.09 sec test 234 Start 234: unit_test_overlap_filter 234: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_overlap_filter 234: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_overlap_filter 234: Test timeout computed to be: 1500 234: Running 1 test case... 234: 234: *** No errors detected 234:  233/249 Test #234: unit_test_overlap_filter ........................... Passed 0.08 sec test 235 Start 235: unit_test_newton_rapson 235: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_newton_rapson 235: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_newton_rapson 235: Test timeout computed to be: 1500 235: Running 1 test case... 235: 235: *** No errors detected 235:  234/249 Test #235: unit_test_newton_rapson ............................ Passed 0.01 sec test 236 Start 236: unit_test_indexparser 236: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_indexparser 236: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_indexparser 236: Test timeout computed to be: 1500 236: Running 3 test cases... 236: 236: *** No errors detected 236:  235/249 Test #236: unit_test_indexparser .............................. Passed 0.07 sec test 237 Start 237: unit_test_orbreorder 237: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_orbreorder 237: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_orbreorder 237: Test timeout computed to be: 1500 237: Running 1 test case... 237: 237: *** No errors detected 237:  236/249 Test #237: unit_test_orbreorder ............................... Passed 0.08 sec test 238 Start 238: unit_test_molden 238: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_molden 238: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_molden 238: Test timeout computed to be: 1500 238: Running 2 test cases... 238: 238: *** No errors detected 238:  237/249 Test #238: unit_test_molden ................................... Passed 0.42 sec test 239 Start 239: unit_test_gaussianwriter 239: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_gaussianwriter 239: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_gaussianwriter 239: Test timeout computed to be: 1500 239: Running 1 test case... 239: 239: *** No errors detected 239:  238/249 Test #239: unit_test_gaussianwriter ........................... Passed 0.07 sec test 240 Start 240: unit_test_incrementalfockbuilder 240: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_incrementalfockbuilder 240: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_incrementalfockbuilder 240: Test timeout computed to be: 1500 240: Running 2 test cases... 240: 240: *** No errors detected 240:  239/249 Test #240: unit_test_incrementalfockbuilder ................... Passed 0.01 sec test 241 Start 241: unit_test_parallelism 241: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_parallelism 241: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_parallelism 241: Test timeout computed to be: 1500 241: Running 1 test case... 241: 241: *** No errors detected 241:  240/249 Test #241: unit_test_parallelism .............................. Passed 0.02 sec test 242 Start 242: unit_test_anderson 242: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_anderson 242: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_anderson 242: Test timeout computed to be: 1500 242: Running 1 test case... 242: 242: *** No errors detected 242:  241/249 Test #242: unit_test_anderson ................................. Passed 0.06 sec test 243 Start 243: unit_test_gaussian_quadratures 243: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_gaussian_quadratures 243: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_gaussian_quadratures 243: Test timeout computed to be: 1500 243: Running 4 test cases... 243: 243: *** No errors detected 243:  242/249 Test #243: unit_test_gaussian_quadratures ..................... Passed 0.07 sec test 244 Start 244: unit_test_pmlocalization 244: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_pmlocalization 244: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_pmlocalization 244: Test timeout computed to be: 1500 244: Running 2 test cases... 244: 244: *** No errors detected 244:  243/249 Test #244: unit_test_pmlocalization ........................... Passed 0.25 sec test 245 Start 245: unit_test_activedensitymatrix 245: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_activedensitymatrix 245: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_activedensitymatrix 245: Test timeout computed to be: 1500 245: Running 1 test case... 245: 245: *** No errors detected 245:  244/249 Test #245: unit_test_activedensitymatrix ...................... Passed 0.09 sec test 246 Start 246: unit_test_activedftengine 246: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_activedftengine 246: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_activedftengine 246: Test timeout computed to be: 1500 246: Running 1 test case... 246: 246: *** No errors detected 246:  245/249 Test #246: unit_test_activedftengine .......................... Passed 0.56 sec test 247 Start 247: unit_test_truncdftengine 247: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_truncdftengine 247: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_truncdftengine 247: Test timeout computed to be: 1500 247: Running 1 test case... 247: 247: *** No errors detected 247:  246/249 Test #247: unit_test_truncdftengine ........................... Passed 0.93 sec test 248 Start 248: unit_test_diabatization 248: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_diabatization 248: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_diabatization 248: Test timeout computed to be: 1500 248: Running 3 test cases... 248: 248: ... ... 2024-8-5 5:33:46 Data was created with basis set def2-svp 227: Running 2 test cases... 227: 227: *** No errors detected 227:  247/249 Test #227: unit_test_dftengine ................................ Passed 4.03 sec test 249 Start 249: unit_test_transition_densities 249: Test command: /<>/obj-x86_64-linux-gnu/xtp/src/tests/unit_test_transition_densities 249: Working Directory: /<>/obj-x86_64-linux-gnu/xtp/src/tests/Run_unit_test_transition_densities 249: Test timeout computed to be: 1500 249: Running 1 test case... 249: 249: ... ... 2024-8-5 5:33:47 Data was created with basis set def2-svp 249: *** No errors detected 249:  248/249 Test #249: unit_test_transition_densities ..................... Passed 0.37 sec 248: ... ... 2024-8-5 5:33:46 Using RI 248: ... ... 2024-8-5 5:33:48 Data was created with basis set def2-svp 248: ... ... 2024-8-5 5:33:49 Dipole Moment excited state 1 0.0214404 -0.239573 -2.74726e-05 248: ... ... 2024-8-5 5:33:49 Dipole Moment excited state 2 0.154532 -0.885145 -1.99557e-05 248: ... ... 2024-8-5 5:33:49 Data was created with basis set def2-svp 248: ... ... 2024-8-5 5:33:49 Transition Dipole Moment 0.754728 0.131574 9.25604e-06 248: ... ... 2024-8-5 5:33:51 Fragment 1 ground state 9.60042e-07 248: ... ... 2024-8-5 5:33:51 Fragment 2 ground state -4.64864e-06 248: ... ... 2024-8-5 5:33:51 Fragment 1 poulation electron -0.4994 248: ... ... 2024-8-5 5:33:51 Fragment 1 poulation hole 0.4994 248: ... ... 2024-8-5 5:33:51 Fragment 2 poulation electron -0.500599 248: ... ... 2024-8-5 5:33:51 Fragment 2 poulation hole 0.5006 248: ... ... 2024-8-5 5:33:51 dQ11 -1.41042e-06 248: ... ... 2024-8-5 5:33:52 Fragment 1 poulation electron -0.500138 248: ... ... 2024-8-5 5:33:52 Fragment 1 poulation hole 0.500138 248: ... ... 2024-8-5 5:33:52 dQ22 -2.05877e-06 248: ... ... 2024-8-5 5:33:52 Data was created with basis set def2-svp 248: ... ... 2024-8-5 5:33:52 Fragment 1 transition -1.13604e-07 248: ... ... 2024-8-5 5:33:52 Fragment 2 transition -9.55366e-08 248: ... ... 2024-8-5 5:33:52 dQ12 -1.80674e-08 248: *** No errors detected 248:  249/249 Test #248: unit_test_diabatization ............................ Passed 6.50 sec 100% tests passed, 0 tests failed out of 249 Total Test time (real) = 24.71 sec make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j2 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/VOTCARC.bash -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_TOOLS/FindFFTW3.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_tools.so.2024 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_tools.so -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_TOOLS/VOTCA_TOOLS_Targets.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_TOOLS/VOTCA_TOOLS_Targets-none.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_TOOLS/VOTCA_TOOLSConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_TOOLS/VOTCA_TOOLSConfigVersion.cmake -- Installing: /<>/debian/tmp/usr/bin/votca_property -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/votca_property" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/votca_property.1 -- Installing: /<>/debian/tmp/usr/include/votca/tools/votca_tools_config.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/NDimVector.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/akimaspline.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/application.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/average.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/calculator.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/colors.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/constants.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/correlate.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/crosscorrelate.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/cubicspline.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/datacollection.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/edge.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/edgecontainer.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/eigen.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/eigenio_matrixmarket.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/eigensystem.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/elements.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/filesystem.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/floatingpointcomparison.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/getline.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/globals.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/graph.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/graph_bf_visitor.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/graph_df_visitor.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/graphalgorithm.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/graphdistvisitor.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/graphnode.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/graphvisitor.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/histogram.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/histogramnew.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/identity.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/lexical_cast.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/linalg.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/linspline.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/mutex.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/name.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/objectfactory.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/optionshandler.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/property.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/propertyiomanipulator.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/random.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/rangeparser.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/reducededge.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/reducedgraph.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/spline.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/structureparameters.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/table.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/thread.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/tokenizer.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/types.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/unitconverter.h -- Installing: /<>/debian/tmp/usr/include/votca/tools/version.h -- Installing: /<>/debian/tmp/usr/share/man/man7/votca-tools.7 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_csg.so.2024 -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_csg.so.2024" to "" -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_csg.so -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSG_Targets.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSG_Targets-none.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSGConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSGConfigVersion.cmake -- Installing: /<>/debian/tmp/usr/bin/csg_reupdate -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_reupdate" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_reupdate.1 -- Installing: /<>/debian/tmp/usr/bin/csg_map -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_map" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_map.1 -- Installing: /<>/debian/tmp/usr/bin/csg_dump -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_dump" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_dump.1 -- Installing: /<>/debian/tmp/usr/bin/csg_property -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_property" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_property.1 -- Installing: /<>/debian/tmp/usr/bin/csg_resample -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_resample" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_resample.1 -- Installing: /<>/debian/tmp/usr/bin/csg_stat -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_stat" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_stat.1 -- Installing: /<>/debian/tmp/usr/bin/csg_fmatch -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_fmatch" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_fmatch.1 -- Installing: /<>/debian/tmp/usr/bin/csg_gmxtopol -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_gmxtopol" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_gmxtopol.1 -- Installing: /<>/debian/tmp/usr/bin/csg_dlptopol -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_dlptopol" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_dlptopol.1 -- Installing: /<>/debian/tmp/usr/bin/csg_density -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_density" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_density.1 -- Installing: /<>/debian/tmp/usr/bin/csg_imc_solve -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_imc_solve" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_imc_solve.1 -- Installing: /<>/debian/tmp/usr/bin/csg_boltzmann -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_boltzmann" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_boltzmann.1 -- Installing: /<>/debian/tmp/usr/bin/csg_fluctuations -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_fluctuations" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_fluctuations.1 -- Installing: /<>/debian/tmp/usr/bin/csg_orientcorr -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_orientcorr" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_orientcorr.1 -- Installing: /<>/debian/tmp/usr/bin/csg_part_dist -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_part_dist" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_part_dist.1 -- Installing: /<>/debian/tmp/usr/bin/csg_partial_rdf -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_partial_rdf" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_partial_rdf.1 -- Installing: /<>/debian/tmp/usr/bin/csg_radii -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_radii" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_radii.1 -- Installing: /<>/debian/tmp/usr/bin/csg_sphericalorder -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_sphericalorder" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_sphericalorder.1 -- Installing: /<>/debian/tmp/usr/bin/csg_traj_force -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/csg_traj_force" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_traj_force.1 -- Installing: /<>/debian/tmp/usr/bin/csg_call -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_call.1 -- Installing: /<>/debian/tmp/usr/bin/csg_inverse -- Installing: /<>/debian/tmp/usr/share/man/man1/csg_inverse.1 -- Installing: /<>/debian/tmp/usr/share/votca/rc/csg-completion.bash -- Installing: /<>/debian/tmp/usr/include/votca/csg/basebead.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/bead.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/beadlist.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/beadmotif.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/beadmotifalgorithms.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/beadmotifconnector.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/beadpair.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/beadstructure.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/beadstructurealgorithms.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/beadtriple.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/boundarycondition.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/cgengine.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/cgmoleculedef.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/cgobserver.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/csgapplication.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/exclusionlist.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/fileformatfactory.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/imcio.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/interaction.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/map.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/molecule.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/moleculeitem.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/nblist.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/nblist_3body.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/nblistgrid.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/nblistgrid_3body.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/nematicorder.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/openbox.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/orthorhombicbox.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/pairlist.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/pdbwriter.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/potentialfunction.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/potentialfunctioncbspl.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/potentialfunctionlj126.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/potentialfunctionljg.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/residue.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/topology.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/topologymap.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/topologyreader.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/trajectoryreader.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/trajectorywriter.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/triclinicbox.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/triplelist.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/units.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/version.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/xyzreader.h -- Installing: /<>/debian/tmp/usr/include/votca/csg/xyzwriter.h -- Installing: /<>/debian/tmp/usr/share/man/man7/votca-csg.7 -- Installing: /<>/debian/tmp/usr/share/votca/xml/mapping.xml -- Installing: /<>/debian/tmp/usr/share/votca/xml/topol.xml -- Installing: /<>/debian/tmp/usr/share/votca/xml/csg_defaults.xml -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/CsgFunctions.pm -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/CsgSimplex.pm -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/csg_table -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/add_POT.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/add_pot_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/calc_density_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/calc_kbint.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/calc_pressure_gromacs.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/calc_pressure_lammps.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/calc_rdf_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/calc_target_rdf_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/check_csg_xml.py -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/clean_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/cma_processor.py -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/convergence_check_default.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/dist_adjust.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/dist_boltzmann_invert.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/dummy.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/functions_common.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/functions_dlpoly.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/functions_genericsim.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/functions_gromacs.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/iie.py -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/imc_stat_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_genericsim.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_optimizer.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_re.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/inverse.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/kbibi_ramp_correction.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/lj_126.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/merge_tables.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/optimizer_parameters_to_potential.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/optimizer_prepare_state.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/optimizer_state_to_mapping.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/optimizer_state_to_potentials.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/optimizer_target_density.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/optimizer_target_pressure.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/optimizer_target_rdf.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/post_add.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/post_add_single.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/post_update_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/post_update_generic_single.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/post_update_re_single.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postadd_acc_convergence.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postadd_average.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postadd_compress.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postadd_convergence.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postadd_copyback.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postadd_dummy.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postadd_overwrite.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postadd_plot.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postadd_shift.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postadd_smooth_at_cut_off.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postupd_addlj.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postupd_cibi_correction.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postupd_extrapolate.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postupd_ibi.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postupd_kbibi_correction.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postupd_pressure.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postupd_scale.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postupd_smooth.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/postupd_splinesmooth.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/potential_extrapolate.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/potential_shift.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/potential_to_dlpoly.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/potential_to_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/potential_to_gromacs.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/potential_to_lammps.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/potentials_to_dlpoly.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/potentials_to_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/pre_update_re.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/prepare_generic.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/prepare_generic_single.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/prepare_iie.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/prepare_imc.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/prepare_optimizer.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/prepare_optimizer_single.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/prepare_re.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/pressure_cor_simple.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/pressure_cor_wjk.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/resample_target.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/run_genericsim.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/run_gromacs.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/simplex_downhill_processor.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/skeleton.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/skeleton.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/start_framework.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_average.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_change_flag.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_combine.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_dummy.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_extrapolate.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_functional.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_get_value.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_integrate.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_linearop.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_scale.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_smooth.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_smooth_at_cut_off.py -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_switch_border.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_to_tab.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/table_to_xvg.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/tables_jackknife.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/tag_file.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/update_ibi.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/update_ibi_pot.pl -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/update_ibi_single.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/update_iie.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/update_imc.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/update_imc_single.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/update_optimizer.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/update_optimizer_single.sh -- Installing: /<>/debian/tmp/usr/share/votca/scripts/inverse/update_re.sh -- Installing: /<>/debian/tmp/usr/share/votca/template/template_serial.cc -- Installing: /<>/debian/tmp/usr/share/votca/template/template_threaded.cc -- Installing: /<>/debian/tmp/usr/share/votca/template/CMakeLists.txt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_hoomd-blue -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_hoomd-blue/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_hoomd-blue/spce.py -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_hoomd-blue/topol.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_hoomd-blue/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_hoomd-blue/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_hoomd-blue/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espressopp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espressopp/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espressopp/spce.py -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espressopp/topol.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espressopp/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espressopp/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espressopp/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/imc -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/imc/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/imc/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/imc/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/imc/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/imc/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/imc/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/imc/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/imc/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/imc/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espresso -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espresso/spce.py -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espresso/topol.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espresso/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espresso/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espresso/spce.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_espresso/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/CG-CG.cma.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/rdf_CG_CG_aim.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/grompp.prep.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/dens_CG_CG_aim.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/density/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/CG-CG.cma.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/grompp.prep.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/function_CKDg.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/cma/simple/function_rdf_weight.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/CG-CG.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/rdf_CG_CG_aim.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/grompp.prep.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/dens_CG_CG_aim.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/density/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/CG-CG.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/grompp.prep.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/function_CKDg.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/pressure/function_rdf_weight.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/CG-CG.cma.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/CG-CG.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/grompp.prep.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/function_CKDg.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/simplex/simple/function_rdf_weight.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re_lammps -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re_lammps/spce.data -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re_lammps/CG-CG.param.init -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re_lammps/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re_lammps/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re_lammps/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re_lammps/spce.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_dlpoly -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_dlpoly/FIELD -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_dlpoly/OUTPUT -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_dlpoly/CONFIG -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_dlpoly/CONTROL -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_dlpoly/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_dlpoly/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_dlpoly/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure_wjk -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure_wjk/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure_wjk/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure_wjk/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure_wjk/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure_wjk/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure_wjk/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure_wjk/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure_wjk/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_pressure_wjk/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/3body_sw -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/3body_sw/spce.data -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/3body_sw/spce.sw -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/3body_sw/convert_tables.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/3body_sw/fmatch.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/3body_sw/calculate_distributions.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/3body_sw/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/3body_sw/water.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/3body_sw/spce.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_lammps -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_lammps/spce.data -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_lammps/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_lammps/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_lammps/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_lammps/spce.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/force_matching -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/force_matching/fmatch.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/force_matching/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/force_matching/water.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/hncgn -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/hncgn/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/hncgn/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/hncgn/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/hncgn/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/hncgn/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/hncgn/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/hncgn/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime_lammps -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime_lammps/spce.data -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime_lammps/pot.fm -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime_lammps/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime_lammps/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime_lammps/pot.imc -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime_lammps/allplots.gp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime_lammps/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime_lammps/pot.ibm -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime_lammps/spce.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/pot.fm -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/pot.imc -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/allplots.gp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/pot.ibm -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/realtime/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_gromacs-multi -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_gromacs-multi/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_gromacs-multi/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_gromacs-multi/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_gromacs-multi/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_gromacs-multi/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_gromacs-multi/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_gromacs-multi/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_gromacs-multi/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/ibi_gromacs-multi/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re/CG-CG.param.init -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re/CG-CG.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/re/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/atomistic -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/atomistic/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/atomistic/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/atomistic/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/atomistic/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/atomistic/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/atomistic/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/spce/atomistic/water.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc/rdf_methanol.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/ibi -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/ibi/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/ibi/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/ibi/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/ibi/rdf_methanol.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/ibi/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/ibi/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/ibi/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/ibi/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/ibi/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/force_matching -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/force_matching/fmatch.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/force_matching/methanol.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/force_matching/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/grompp3.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/grompp0.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/rdf_methanol.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/grompp2.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/imc_gromacs-remd/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/atomistic -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/atomistic/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/atomistic/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/atomistic/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/atomistic/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/atomistic/methanol_opls.itp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/atomistic/methanol.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/atomistic/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol/atomistic/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/README.rst -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain/boltzmann_cmds -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain/run_fmatch.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain/run_boltzmann.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/single_chain/propane.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/A-A.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/B-B.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/A-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/topology.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/A-B.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/bond.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/B-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/map.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/README -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/bond.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/A-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/topology.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/bond.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/B-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/map.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/angle.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/pre/A-A.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/angle.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/angle.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc-ibiintra/A-A.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/A-A.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/B-B.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/A-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/A-B.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/B-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/README -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/A-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/B-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/table_a1.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/A-A.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/pre/table_b1.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/table_a1.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/A-A.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/imc/table_b1.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/A-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/B-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/table_a1.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/A-A.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/ibi/table_b1.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/angle.dist.new -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/bond.dist.new -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/B-B.dist.new -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/fmatch.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/A-A.dist.new -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/A-B.dist.new -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/propane/atomistic/propane.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/A-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/boltzmann_cmds -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/angle.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/run_Boltzmann.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/B-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/bond.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/table_a1.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/A-A.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_nonbonded/table_b1.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/A-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/bond.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/hexane_cg.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/B-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/angle.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/ibi_all/A-A.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/force_matching -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/force_matching/hexane.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/force_matching/fmatch.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/force_matching/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/atomistic -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/atomistic/hexane.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/atomistic/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/atomistic/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/atomistic/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/atomistic/boltzmann_cmds -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/atomistic/run_Boltzmann.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/atomistic/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/atomistic/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/atomistic/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/hybrid_force_matching -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/hybrid_force_matching/hexane.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/hybrid_force_matching/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/hybrid_force_matching/fmatch.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/hybrid_force_matching/README -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/hybrid_force_matching/Extract_Energies.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/hexane/hybrid_force_matching/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062 -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/ME-WT.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/ME-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/ME-ME.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/WT-WT.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/function_CKDg_WT_WT.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/ME-ME.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/grompp.prep.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/WT-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/function_CKDg_ME_WT.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/function_CKDg_ME_ME.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/simplex/function_rdf_weight.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/WT-WT.param.init -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/ME-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/ME-ME.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/ME-WT.param.init -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/WT-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/ME-ME.param.init -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/re/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/atomistic -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/atomistic/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/atomistic/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/atomistic/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/atomistic/methanol_opls.itp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/atomistic/methanol.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/atomistic/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/atomistic/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.062/atomistic/water.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938 -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/ME-WT.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/ME-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/ME-ME.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/WT-WT.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/function_CKDg_WT_WT.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/ME-ME.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/grompp.prep.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/WT-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/function_CKDg_ME_WT.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/function_CKDg_ME_ME.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/simplex/function_rdf_weight.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/WT-WT.param.init -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/ME-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/ME-ME.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/ME-WT.param.init -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/WT-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/ME-ME.param.init -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/re/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/atomistic -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/atomistic/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/atomistic/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/atomistic/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/atomistic/methanol_opls.itp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/atomistic/methanol.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/atomistic/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/atomistic/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.938/atomistic/water.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5 -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/ME-WT.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/ME-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/ME-ME.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/WT-WT.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/function_CKDg_WT_WT.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/ME-ME.simplex.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/grompp.prep.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/WT-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/function_CKDg_ME_WT.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/function_CKDg_ME_ME.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/simplex/function_rdf_weight.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/re -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/re/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/re/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/re/WT-WT.param.init -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/re/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/re/ME-WT.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/re/ME-ME.aa.rdf -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/re/ME-WT.param.init -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/methanol-water/X_0.5/re/index.ndx -- Installing: 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/<>/debian/tmp/usr/share/votca/csg-tutorials/LJ1-LJ2/imc/LJ1-LJ2.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/LJ1-LJ2/imc/LJ2-LJ2.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/LJ1-LJ2/imc/LJ1-LJ1.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/LJ1-LJ2/imc/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/LJ1-LJ2/imc/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/LJ1-LJ2/imc/settings_pre.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/LJ1-LJ2/imc/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/LJ1-LJ2/imc/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/LJ1-LJ2/imc/svd.py -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi/UR-SOL.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi/SOL-SOL.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi/UR-UR.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/ibi/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/UR-SOL.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/SOL-SOL.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/settings_3.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/settings_2.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/UR-UR.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/README -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/kb-ibi/run.sh -- Installing: 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/<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/A-A.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/B-B.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/A-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/A-B.pot.in -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/B-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/README -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre/table.xvg -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre/topol.top -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre/A-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre/index.ndx -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre/settings.xml -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre/B-B.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre/run.sh -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/pre/A-A.dist.tgt -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/grompp.mdp -- Installing: /<>/debian/tmp/usr/share/votca/csg-tutorials/urea-water/cibi/A-A.dist.tgt -- Installing: /<>/debian/tmp/usr/include/votca/xtp/votca_xtp_config.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/ERIs.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/GaussianQuadratureBase.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/ImaginaryAxisIntegration.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/IncrementalFockBuilder.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/IndexParser.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/activedensitymatrix.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/adiis.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/adiis_costfunction.h -- Installing: 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Installing: /<>/debian/tmp/usr/include/votca/xtp/qmpackagefactory.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/qmpair.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/qmregion.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/qmstate.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/qmthread.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/qmtool.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/quadrature_factory.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/radial_euler_maclaurin_rule.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/rate_engine.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/region.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/regular_grid.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/rpa.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/segid.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/segment.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/segmentmapper.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/sigma_base.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/sigmafactory.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/sphere_lebedev_rule.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/stateapplication.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/statefilter_base.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/statesaver.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/statetracker.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/staticregion.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/staticsite.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/symmetric_matrix.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/threecenter.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/toolfactory.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/topology.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/transition_densities.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/trustregion.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/vc2index.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/version.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/vxc_functionals.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/vxc_grid.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/vxc_potential.h -- Installing: /<>/debian/tmp/usr/include/votca/xtp/xtpapplication.h -- Installing: /<>/debian/tmp/usr/bin/xtp_basisset -- Installing: /<>/debian/tmp/usr/share/man/man1/xtp_basisset.1 -- Installing: /<>/debian/tmp/usr/bin/xtp_update_mapfile -- Installing: /<>/debian/tmp/usr/share/man/man1/xtp_update_mapfile.1 -- Installing: /<>/debian/tmp/usr/bin/xtp_modify_jobfile -- Installing: /<>/debian/tmp/usr/share/man/man1/xtp_modify_jobfile.1 -- Installing: /<>/debian/tmp/usr/bin/xtp_autogen_mapping -- Installing: /<>/debian/tmp/usr/share/man/man1/xtp_autogen_mapping.1 -- Installing: /<>/debian/tmp/usr/bin/xtp_qmmm2qm -- Installing: /<>/debian/tmp/usr/share/man/man1/xtp_qmmm2qm.1 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_xtp.so.2024 -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_xtp.so.2024" to "" -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_xtp.so -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_XTP/VOTCA_XTP_Targets.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_XTP/VOTCA_XTP_Targets-none.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_XTP/VOTCA_XTPConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_XTP/VOTCA_XTPConfigVersion.cmake -- Installing: /<>/debian/tmp/usr/bin/xtp_map -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/xtp_map" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/xtp_map.1 -- Installing: /<>/debian/tmp/usr/bin/xtp_run -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/xtp_run" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/xtp_run.1 -- Installing: /<>/debian/tmp/usr/bin/xtp_tools -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/xtp_tools" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/xtp_tools.1 -- Installing: /<>/debian/tmp/usr/bin/xtp_parallel -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/bin/xtp_parallel" to "" -- Installing: /<>/debian/tmp/usr/share/man/man1/xtp_parallel.1 -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/3-21G.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/6-311++G(2p,2d).xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/6-311++G.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/6-311+G(2d,p).xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/6-311+G**.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/6-311G.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/6-31G**.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/6-31G.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/Weigend_coulomb_fitting.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/ahlrichs_coulomb_fitting.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aug-cc-pvdz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aug-cc-pvqz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aug-cc-pvtz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-aug-cc-pvdz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-aug-cc-pvqz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-aug-cc-pvtz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-cc-pv5z.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-cc-pvdz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-cc-pvqz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-cc-pvtz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-def2-qzvp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-def2-qzvpp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-def2-qzvppd.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-def2-sv(p).xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-def2-svp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-def2-svpd.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-def2-tzvp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-def2-tzvpd.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-def2-tzvpp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-def2-tzvppd.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-ubecppol.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/aux-ubecppol_0.2.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/cc-pvdz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/cc-pvqz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/cc-pvtz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-qzvp-ecp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-qzvp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-qzvpd.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-qzvpp-ecp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-qzvpp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-qzvppd.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-sv(p).xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-svp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-svpd.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-tzvp-ecp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-tzvp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-tzvpd.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-tzvpp-ecp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-tzvpp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/def2-tzvppd.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/optaux-aug-cc-pvdz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/optaux-aug-cc-pvqz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/optaux-aug-cc-pvtz.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/ubecp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/ubecppol.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/ubecppoldiff.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/basis_sets/ubecppoldiff_s.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/apdft.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/coupling.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/densityanalysis.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/dftgwbse.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/diabatization.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/eanalyze.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/einternal.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/eqm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/excitoncoupling.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/gencube.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/gpu_benchmark.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/ianalyze.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/iexcitoncl.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/iqm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/kmclifetime.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/kmcmultiple.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/log2mps.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/mapchecker.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/mol2orb.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/molpol.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/neighborlist.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/orb2fchk.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/orb2mol.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/partialcharges.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/qmmm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/spectrum.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/vaverage.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/subpackages/bsecoupling.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/subpackages/dftcoupling.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/subpackages/dftpackage.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/subpackages/esp2multipole.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/subpackages/gwbse.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/subpackages/localize.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/subpackages/polar.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/subpackages/region.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/xml/subpackages/statetracker.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/ecps/CRENBL_ECP.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/ecps/ECP2SDF.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/ecps/SBKJC_ECP.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/ecps/corelevels.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/ecps/def2-ecp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/ecps/ecp.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/xtp_benchmark -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons/Benzene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons/Tetracene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons/Heptacene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons/Octacene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons/Decacene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons/Anthracene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons/Pentacene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons/Nonacene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons/Hexacene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Aromatic_hydrocarbons/Naphthalene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/pyridine.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/pyrazine.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/tetrazine.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/benzene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/naphthalene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/pyrrole.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/pyridazine.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/triazine.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/imidazole.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/furan.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/pyrimidine.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/nucleobases -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/nucleobases/thymine.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/nucleobases/adenine.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/nucleobases/cytosine.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/nucleobases/uracil.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aldehydes_ketones_and_amides -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aldehydes_ketones_and_amides/acetamide.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aldehydes_ketones_and_amides/formaldehyde.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aldehydes_ketones_and_amides/formamide.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aldehydes_ketones_and_amides/propanamide.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aldehydes_ketones_and_amides/acetone.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aldehydes_ketones_and_amides/benzoquinone.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/unsaturated_aliphatic_hydrocarbons -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/unsaturated_aliphatic_hydrocarbons/ethene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/unsaturated_aliphatic_hydrocarbons/cyclopropene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/unsaturated_aliphatic_hydrocarbons/butadiene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/unsaturated_aliphatic_hydrocarbons/octatetraene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/unsaturated_aliphatic_hydrocarbons/hexatriene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/unsaturated_aliphatic_hydrocarbons/norbornadiene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/unsaturated_aliphatic_hydrocarbons/cyclopentadiene.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp/benchmark/xtp_benchmark -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/geometry_optimization.ipynb -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/dftgwbse.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/MP_FILES -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/MP_FILES/Methane_h.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/MP_FILES/Methane_s1.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/MP_FILES/Methane_n2s1.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/MP_FILES/Methane_e.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/MP_FILES/Methane_n.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/state.hdf5 -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/methane.orb -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/methane_summary.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/system.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/mapchecker.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/files_examples/methane.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/scripts -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/scripts/run_energy.py -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/scripts/run_mapchecker.py -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/scripts/run_optimization.py -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/scripts/run_gradient.py -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/pyxtp/single_point.ipynb -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/README.rst -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/qmmm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/qmmm.jobs -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/hole_opt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/hole_opt/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/hole_opt/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/hole_opt/system.trj -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/hole_opt/system.engrad -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/hole_opt/system.opt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/hole_opt/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/hole_opt/system.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/hole_opt/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/hole_opt/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/neutral -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/neutral/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/neutral/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/neutral/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/neutral/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/neutral/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/hole -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/hole/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/hole/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/hole/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/hole/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/hole/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/electron -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/electron/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/electron/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/electron/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/electron/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/electron/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/nGEO/system.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/Reorg_summary.csv -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/neutral -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/neutral/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/neutral/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/neutral/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/neutral/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/neutral/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/hole -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/hole/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/hole/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/hole/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/hole/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/hole/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/hGEO/system.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/neutral -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/neutral/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/neutral/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/neutral/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/neutral/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/neutral/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/electron -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/electron/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/electron/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/electron/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/electron/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/electron/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/system.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/GS_opt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/GS_opt/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/GS_opt/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/GS_opt/system.trj -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/GS_opt/system.engrad -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/GS_opt/system.opt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/GS_opt/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/GS_opt/system.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/GS_opt/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/GS_opt/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/electrom_opt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/electrom_opt/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/electrom_opt/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/electrom_opt/system.trj -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/electrom_opt/system.engrad -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/electrom_opt/system.opt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/electrom_opt/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/electrom_opt/system.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/electrom_opt/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/electrom_opt/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/thiophene_n.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/thiophene_h.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/thiophene_e.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/thiophene_n.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/thiophene_h.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/system.vpot -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/log2mps.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/thiophene_n.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/thiophene_n-pol.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/system.pc_chelpg -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/polar.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/GS_chelpg/molpol.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/system.vpot -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/thiophene_e-pol.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/log2mps.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/system.pc_chelpg -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/polar.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/thiophene_e.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/electron_chelpg/molpol.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/system.vpot -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/log2mps.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/system.prop -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/system.inp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/thiophene_h-pol.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/thiophene_h.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/system.pc_chelpg -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/system.log -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/polar.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/system_property.txt -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/system.gbw -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/hole_chelpg/molpol.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MP_FILES/thiophene_e.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QMMM_LAMMPS.ipynb -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/qmmm_mm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/system.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MD_FILES -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MD_FILES/newfile.data -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MD_FILES/MD_Input -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MD_FILES/MD_Input/molecule_in_vacuum.in -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MD_FILES/MD_Input/molecule_in_vacuum.in.settings -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MD_FILES/MD_Input/molecule_in_vacuum.in.init -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MD_FILES/MD_Input/molecule_in_vacuum.in.output -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MD_FILES/MD_Input/molecule_in_vacuum.data -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MD_FILES/MD_Input/molecule_in_vacuum.in.run -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/MD_FILES/traj.dump -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/iqm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/eqm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/KMC_Thiophene -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/KMC_Thiophene/LAMMPS_KMC.ipynb -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/KMC_Thiophene/state.hdf5 -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LAMMPS/KMC_Thiophene/system.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/KMC_Methane -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/KMC_Methane/GROMACS_KMC.ipynb -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/KMC_Methane/lifetimes.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/KMC_Methane/change_energy.py -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/qmmm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/QC_FILES -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/QC_FILES/methane.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/MP_FILES -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/MP_FILES/Methane_h.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/MP_FILES/Methane_s1.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/MP_FILES/Methane_n2s1.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/MP_FILES/Methane_e.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/MP_FILES/Methane_n.mps -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/qmmm_mm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/system.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/MD_FILES -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/MD_FILES/conf.gro -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/MD_FILES/topol.tpr -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/QMMM_GROMACS.ipynb -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/iqm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/GROMACS/Methane/eqm.xml -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/LICENSE -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/clean_notebooks.sh -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/tools -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/tools/pyxtp -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/tools/pyxtp/PYXTP.ipynb -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/tools/dftgwbse_CH4 -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/tools/dftgwbse_CH4/DFTGWBSE_ENERGY.ipynb -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/tools/dftgwbse_CH4/methane.xyz -- Installing: /<>/debian/tmp/usr/share/votca/xtp-tutorials/tools/dftgwbse_CH4/dftgwbse2.xml make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_install debian/rules override_dh_installdocs make[1]: Entering directory '/<>' mkdir -p /<>/debian/tmp/usr/share/doc/votca/html test -d /<>/obj-x86_64-linux-gnu/sphinx.html && \ cp -aru /<>/obj-x86_64-linux-gnu/sphinx.html/* /<>/debian/tmp/usr/share/doc/votca/html/ dh_installdocs dh_link -i make[1]: Leaving directory '/<>' dh_sphinxdoc dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/votca-data/usr/share/doc/votca-data/html/_static/js/html5shiv.min.js dh_installchangelogs dh_installman dh_bash-completion dh_python3 dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package votca-tutorials: substitution variable ${python3:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'votca-tutorials' in '../votca-tutorials_2024-2_all.deb'. dpkg-deb: building package 'libvotca-dev' in '../libvotca-dev_2024-2_amd64.deb'. dpkg-deb: building package 'libvotca-2024' in '../libvotca-2024_2024-2_amd64.deb'. dpkg-deb: building package 'libvotca-2024-dbgsym' in '../libvotca-2024-dbgsym_2024-2_amd64.deb'. dpkg-deb: building package 'votca' in '../votca_2024-2_amd64.deb'. dpkg-deb: building package 'votca-dbgsym' in '../votca-dbgsym_2024-2_amd64.deb'. dpkg-deb: building package 'votca-data' in '../votca-data_2024-2_all.deb'. dpkg-genbuildinfo -O../votca_2024-2_amd64.buildinfo dpkg-genchanges -O../votca_2024-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-05T05:39:12Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ votca_2024-2_amd64.changes: --------------------------- Format: 1.8 Date: Wed, 28 Feb 2024 19:52:32 -0800 Source: votca Binary: libvotca-2024 libvotca-2024-dbgsym libvotca-dev votca votca-data votca-dbgsym votca-tutorials Architecture: source amd64 all Version: 2024-2 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debichem Team Changed-By: Nicholas Breen Description: libvotca-2024 - VOTCA molecular dynamics analysis - shared libraries libvotca-dev - VOTCA molecular dynamics analysis - development files votca - Molecular dynamics analysis - coarse-graining and charge transpor votca-data - VOTCA molecular dynamics analysis - basis sets and scripts votca-tutorials - VOTCA molecular dynamics analysis - tutorials Changes: votca (2024-2) unstable; urgency=medium . * Upload to unstable. * control: Replace B-D on pkg-config with pkgconf. 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1b011b1676f1f44c62221d8bdfb9654fc005240240efd9328d24a08bac52c594 151634556 libvotca-2024-dbgsym_2024-2_amd64.deb 7da66a9bad3e6be93be8e867c9e51d07f447547eb7e913105de969df01c43e84 13074484 libvotca-2024_2024-2_amd64.deb 5251114ff23cb208436e3d13d10f48fe570f975157ff1a7c53dfdf35d7348896 144832 libvotca-dev_2024-2_amd64.deb 7ce77d58145ab04e785242ad66c9ef13fca3a9fbc18a16054291310f71cf5e5b 3816912 votca-data_2024-2_all.deb 425bada37f8c2e3873798077ef9bcc1bf8f4c27e927acafe9fcea5e21b496b90 21224208 votca-dbgsym_2024-2_amd64.deb 36ded532e993a07b9e3eedbcdf9a196feceabcf04247793eab0ae6f9c79b4244 18231968 votca-tutorials_2024-2_all.deb bd6609968c9bf392d09d2c484bcddc73389084719df8d372173d7328e4f6c746 23091 votca_2024-2_amd64.buildinfo df07e35c7c920b57867296c6da8d1ff804434a8c21ebdb3fccd39ea78b57edca 650944 votca_2024-2_amd64.deb Files: 4682320f4d11437bd13bcda56e29a01e 1812 science optional votca_2024-2.dsc d6f83af8660583a3270ae6327fab38c4 205776 science optional votca_2024-2.debian.tar.xz 9880f2071cb92ddcde86b8ff2d884764 151634556 debug optional libvotca-2024-dbgsym_2024-2_amd64.deb 4812881ab2fc1a7b48cba56498be0f52 13074484 libs optional libvotca-2024_2024-2_amd64.deb c9f71845c34da195167b022341ae527c 144832 libdevel optional libvotca-dev_2024-2_amd64.deb adab9c1d4941851be7250ee6299e0d57 3816912 science optional votca-data_2024-2_all.deb bf9aeecdf25639709540e7fb922349fc 21224208 debug optional votca-dbgsym_2024-2_amd64.deb 43ee4617c8e5dd7245dc756e362b2092 18231968 science optional votca-tutorials_2024-2_all.deb 130b42b827496ab97ee12f00f0c4bfeb 23091 science optional votca_2024-2_amd64.buildinfo f8e703076ca7f22b530cb057ad335578 650944 science optional votca_2024-2_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: votca Binary: libvotca-2024 libvotca-2024-dbgsym libvotca-dev votca votca-data votca-dbgsym votca-tutorials 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votca-data_2024-2_all.deb fc5bea4708dd87df0237bceb11a2a1ddd58a28be 21224208 votca-dbgsym_2024-2_amd64.deb 2d861fe4e11161201393a4e767d512976b89db44 18231968 votca-tutorials_2024-2_all.deb d2eeb544bb93e1f897d84843d6dcc936015473d2 650944 votca_2024-2_amd64.deb Checksums-Sha256: 975b8d9ee6e58b1ec8c9b6efdc60adbdccee402f1caf651adfbf48432ddf15e3 1812 votca_2024-2.dsc 1b011b1676f1f44c62221d8bdfb9654fc005240240efd9328d24a08bac52c594 151634556 libvotca-2024-dbgsym_2024-2_amd64.deb 7da66a9bad3e6be93be8e867c9e51d07f447547eb7e913105de969df01c43e84 13074484 libvotca-2024_2024-2_amd64.deb 5251114ff23cb208436e3d13d10f48fe570f975157ff1a7c53dfdf35d7348896 144832 libvotca-dev_2024-2_amd64.deb 7ce77d58145ab04e785242ad66c9ef13fca3a9fbc18a16054291310f71cf5e5b 3816912 votca-data_2024-2_all.deb 425bada37f8c2e3873798077ef9bcc1bf8f4c27e927acafe9fcea5e21b496b90 21224208 votca-dbgsym_2024-2_amd64.deb 36ded532e993a07b9e3eedbcdf9a196feceabcf04247793eab0ae6f9c79b4244 18231968 votca-tutorials_2024-2_all.deb df07e35c7c920b57867296c6da8d1ff804434a8c21ebdb3fccd39ea78b57edca 650944 votca_2024-2_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 05 Aug 2024 05:39:08 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137), aglfn (= 1.7+git20191031.4036a9c-2), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), bash-completion (= 1:2.14.0-1), binutils (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), binutils-x86-64-linux-gnu (= 2.42.90.20240720-2), bsdextrautils (= 2.40.2-2), bsdutils (= 1:2.40.2-2), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), clang-format (= 1:16.0-58.1), clang-format-16 (= 1:16.0.6-27+b1), cmake (= 3.30.2-1), cmake-data (= 3.30.2-1), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-4), cpp-13-x86-64-linux-gnu (= 13.3.0-4), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-python (= 6.20240603), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), docutils-common (= 0.21.2+dfsg-2), doxygen (= 1.9.8+ds-2+b1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), fontconfig (= 2.15.0-1.1), fontconfig-config (= 2.15.0-1.1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-freefont-ttf (= 20211204+svn4273-2), fonts-lato (= 2.015-1), fonts-mathjax (= 2.7.9+dfsg-1), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-4), gcc-13-base (= 13.3.0-4), gcc-13-x86-64-linux-gnu (= 13.3.0-4), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gdb (= 15.1-1), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), gfortran-13 (= 13.3.0-4), gfortran-13-x86-64-linux-gnu (= 13.3.0-4), gnuplot-data (= 6.0.0+dfsg1-3), gnuplot-nox (= 6.0.0+dfsg1-3), graphviz (= 2.42.4-1), grep (= 3.11-4), groff-base (= 1.23.0-5), gromacs (= 2024.2-1), gromacs-data (= 2024.2-1), gzip (= 1.12-1.1), hdf5-helpers (= 1.10.10+repack-4), hostname (= 3.23+nmu2), ibverbs-providers (= 52.0-2), icu-devtools (= 72.1-5), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), isa-support (= 24), libabsl20230802 (= 20230802.1-4), libacl1 (= 2.3.2-2), libaec-dev (= 1.1.3-1), libaec0 (= 1.1.3-1), libamd-comgr2 (= 6.0+git20231212.4510c28+dfsg-3+b1), libamdhip64-5 (= 5.7.1-4), libann0 (= 1.1.2+doc-9+b1), libaom3 (= 3.9.1-1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.2-2.1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libavif16 (= 1.1.0-3), libbabeltrace1 (= 1.5.11-3+b7), libbinutils (= 2.42.90.20240720-2), libblas3 (= 3.12.0-3), libblkid1 (= 2.40.2-2), libboost-all-dev (= 1.83.0.2+b2), libboost-atomic-dev (= 1.83.0.2+b2), libboost-atomic1.83-dev (= 1.83.0-3.1), libboost-atomic1.83.0 (= 1.83.0-3.1), libboost-chrono-dev (= 1.83.0.2+b2), libboost-chrono1.83-dev (= 1.83.0-3.1), libboost-chrono1.83.0t64 (= 1.83.0-3.1), libboost-container-dev (= 1.83.0.2+b2), libboost-container1.83-dev (= 1.83.0-3.1), libboost-container1.83.0 (= 1.83.0-3.1), libboost-context-dev (= 1.83.0.2+b2), libboost-context1.83-dev (= 1.83.0-3.1), libboost-context1.83.0 (= 1.83.0-3.1), libboost-coroutine-dev (= 1.83.0.2+b2), libboost-coroutine1.83-dev (= 1.83.0-3.1), libboost-coroutine1.83.0 (= 1.83.0-3.1), libboost-date-time-dev (= 1.83.0.2+b2), libboost-date-time1.83-dev (= 1.83.0-3.1), libboost-date-time1.83.0 (= 1.83.0-3.1), libboost-dev (= 1.83.0.2+b2), libboost-exception-dev (= 1.83.0.2+b2), libboost-exception1.83-dev (= 1.83.0-3.1), libboost-fiber-dev (= 1.83.0.2+b2), libboost-fiber1.83-dev (= 1.83.0-3.1), libboost-fiber1.83.0 (= 1.83.0-3.1), libboost-filesystem-dev (= 1.83.0.2+b2), libboost-filesystem1.83-dev (= 1.83.0-3.1), libboost-filesystem1.83.0 (= 1.83.0-3.1), libboost-graph-dev (= 1.83.0.2+b2), libboost-graph-parallel-dev (= 1.83.0.2+b2), libboost-graph-parallel1.83-dev (= 1.83.0-3.1), libboost-graph-parallel1.83.0 (= 1.83.0-3.1), libboost-graph1.83-dev (= 1.83.0-3.1), libboost-graph1.83.0 (= 1.83.0-3.1), libboost-iostreams-dev (= 1.83.0.2+b2), libboost-iostreams1.83-dev (= 1.83.0-3.1), libboost-iostreams1.83.0 (= 1.83.0-3.1), libboost-json-dev (= 1.83.0.2+b2), libboost-json1.83-dev (= 1.83.0-3.1), libboost-json1.83.0 (= 1.83.0-3.1), libboost-locale-dev (= 1.83.0.2+b2), libboost-locale1.83-dev (= 1.83.0-3.1), libboost-locale1.83.0 (= 1.83.0-3.1), libboost-log-dev (= 1.83.0.2+b2), libboost-log1.83-dev (= 1.83.0-3.1), libboost-log1.83.0 (= 1.83.0-3.1), libboost-math-dev (= 1.83.0.2+b2), libboost-math1.83-dev (= 1.83.0-3.1), libboost-math1.83.0 (= 1.83.0-3.1), libboost-mpi-dev (= 1.83.0.2+b2), libboost-mpi-python-dev (= 1.83.0.2+b2), libboost-mpi-python1.83-dev (= 1.83.0-3.1), libboost-mpi-python1.83.0 (= 1.83.0-3.1), libboost-mpi1.83-dev (= 1.83.0-3.1), libboost-mpi1.83.0 (= 1.83.0-3.1), libboost-nowide-dev (= 1.83.0.2+b2), libboost-nowide1.83-dev (= 1.83.0-3.1), libboost-nowide1.83.0 (= 1.83.0-3.1), libboost-numpy-dev (= 1.83.0.2+b2), libboost-numpy1.83-dev (= 1.83.0-3.1), libboost-numpy1.83.0 (= 1.83.0-3.1), libboost-program-options-dev (= 1.83.0.2+b2), libboost-program-options1.83-dev (= 1.83.0-3.1), libboost-program-options1.83.0 (= 1.83.0-3.1), libboost-python-dev (= 1.83.0.2+b2), libboost-python1.83-dev (= 1.83.0-3.1), libboost-python1.83.0 (= 1.83.0-3.1), libboost-random-dev (= 1.83.0.2+b2), libboost-random1.83-dev (= 1.83.0-3.1), libboost-random1.83.0 (= 1.83.0-3.1), libboost-regex-dev (= 1.83.0.2+b2), libboost-regex1.83-dev (= 1.83.0-3.1), libboost-regex1.83.0 (= 1.83.0-3.1), libboost-serialization-dev (= 1.83.0.2+b2), libboost-serialization1.83-dev (= 1.83.0-3.1), libboost-serialization1.83.0 (= 1.83.0-3.1), libboost-stacktrace-dev (= 1.83.0.2+b2), libboost-stacktrace1.83-dev (= 1.83.0-3.1), libboost-stacktrace1.83.0 (= 1.83.0-3.1), libboost-system-dev (= 1.83.0.2+b2), libboost-system1.83-dev (= 1.83.0-3.1), libboost-system1.83.0 (= 1.83.0-3.1), libboost-test-dev (= 1.83.0.2+b2), libboost-test1.83-dev (= 1.83.0-3.1), libboost-test1.83.0 (= 1.83.0-3.1), libboost-thread-dev (= 1.83.0.2+b2), libboost-thread1.83-dev (= 1.83.0-3.1), libboost-thread1.83.0 (= 1.83.0-3.1), libboost-timer-dev (= 1.83.0.2+b2), libboost-timer1.83-dev (= 1.83.0-3.1), libboost-timer1.83.0 (= 1.83.0-3.1), libboost-tools-dev (= 1.83.0.2+b2), libboost-type-erasure-dev (= 1.83.0.2+b2), libboost-type-erasure1.83-dev (= 1.83.0-3.1), libboost-type-erasure1.83.0 (= 1.83.0-3.1), libboost-url-dev (= 1.83.0.2+b2), libboost-url1.83-dev (= 1.83.0-3.1), libboost-url1.83.0 (= 1.83.0-3.1), libboost-wave-dev (= 1.83.0.2+b2), libboost-wave1.83-dev (= 1.83.0-3.1), libboost-wave1.83.0 (= 1.83.0-3.1), libboost1.83-dev (= 1.83.0-3.1), libboost1.83-tools-dev (= 1.83.0-3.1), libbrotli-dev (= 1.1.0-2+b4), libbrotli1 (= 1.1.0-2+b4), libbsd0 (= 0.12.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcairo2 (= 1.18.0-3+b1), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcbor0.10 (= 0.10.2-1.2), libcc1-0 (= 14.2.0-1), libcdt5 (= 2.42.4-1), libcgraph6 (= 2.42.4-1), libclang-cpp16t64 (= 1:16.0.6-27+b1), libclang1-16t64 (= 1:16.0.6-27+b1), libcom-err2 (= 1.47.1-1), libcoordgen3 (= 3.0.2-1+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libcurl3t64-gnutls (= 8.9.1-1), libcurl4-openssl-dev (= 8.9.1-1), libcurl4t64 (= 8.9.1-1), libdatrie1 (= 0.2.13-3), libdav1d7 (= 1.4.3-1), libdb5.3t64 (= 5.3.28+dfsg2-7), libde265-0 (= 1.0.15-1+b2), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdebuginfod-common (= 0.191-2), libdebuginfod1t64 (= 0.191-2), libdeflate0 (= 1.20-1), libdpkg-perl (= 1.22.11), libdrm-amdgpu1 (= 2.4.122-1), libdrm-common (= 2.4.122-1), libdrm2 (= 2.4.122-1), libdw1t64 (= 0.191-2), libecpint-dev (= 1.0.7-4+b1), libedit2 (= 3.1-20240517-1), libeigen3-dev (= 3.4.0-4), libelf1t64 (= 0.191-2), libevent-2.1-7t64 (= 2.1.12-stable-10), libevent-core-2.1-7t64 (= 2.1.12-stable-10), libevent-dev (= 2.1.12-stable-10), libevent-extra-2.1-7t64 (= 2.1.12-stable-10), libevent-openssl-2.1-7t64 (= 2.1.12-stable-10), libevent-pthreads-2.1-7t64 (= 2.1.12-stable-10), libexpat1 (= 2.6.2-1), libexpat1-dev (= 2.6.2-1), libfabric1 (= 1.17.0-3+b1), libffi8 (= 3.4.6-1), libfftw3-bin (= 3.3.10-1+b3), libfftw3-dev (= 3.3.10-1+b3), libfftw3-double3 (= 3.3.10-1+b3), libfftw3-long3 (= 3.3.10-1+b3), libfftw3-quad3 (= 3.3.10-1+b3), libfftw3-single3 (= 3.3.10-1+b3), libfido2-1 (= 1.15.0-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libfmt9 (= 9.1.0+ds1-2), libfontconfig1 (= 2.15.0-1.1), libfreetype6 (= 2.13.2+dfsg-1+b4), libfribidi0 (= 1.0.15-1), libgav1-1 (= 0.19.0-2+b1), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgcrypt20 (= 1.11.0-5), libgd3 (= 2.3.3-12), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgfortran-13-dev (= 13.3.0-4), libgfortran5 (= 14.2.0-1), libglib2.0-0t64 (= 2.81.1-3), libgmp-dev (= 2:6.3.0+dfsg-2+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgmpxx4ldbl (= 2:6.3.0+dfsg-2+b1), libgnutls-dane0t64 (= 3.8.6-2), libgnutls-openssl27t64 (= 3.8.6-2), libgnutls28-dev (= 3.8.6-2), libgnutls30t64 (= 3.8.6-2), libgomp1 (= 14.2.0-1), libgpg-error0 (= 1.50-2), libgprofng0 (= 2.42.90.20240720-2), libgraphite2-3 (= 1.3.14-2), libgromacs-dev (= 2024.2-1), libgromacs9 (= 2024.2-1), libgsl-dev (= 2.8+dfsg-3), libgsl28 (= 2.8+dfsg-3), libgslcblas0 (= 2.8+dfsg-3), libgssapi-krb5-2 (= 1.21.3-3), libgts-0.7-5t64 (= 0.7.6+darcs121130-5.2), libgvc6 (= 2.42.4-1), libgvpr2 (= 2.42.4-1), libharfbuzz0b (= 8.3.0-2+b1), libhdf5-103-1t64 (= 1.10.10+repack-4), libhdf5-cpp-103-1t64 (= 1.10.10+repack-4), libhdf5-dev (= 1.10.10+repack-4), libhdf5-fortran-102t64 (= 1.10.10+repack-4), libhdf5-hl-100t64 (= 1.10.10+repack-4), libhdf5-hl-cpp-100t64 (= 1.10.10+repack-4), libhdf5-hl-fortran-100t64 (= 1.10.10+repack-4), libheif-plugin-dav1d (= 1.18.1-1), libheif-plugin-libde265 (= 1.18.1-1), libheif1 (= 1.18.1-1), libhogweed6t64 (= 3.10-1), libhsa-runtime64-1 (= 5.7.1-2), libhsakmt1 (= 5.7.0-1), libhwasan0 (= 14.2.0-1), libhwloc-dev (= 2.11.0-2), libhwloc-plugins (= 2.11.0-2), libhwloc15 (= 2.11.0-2), libibmad5 (= 52.0-2), libibumad3 (= 52.0-2), libibverbs-dev (= 52.0-2), libibverbs1 (= 52.0-2), libice6 (= 2:1.0.10-1+b1), libicu-dev (= 72.1-5), libicu72 (= 72.1-5), libidn2-0 (= 2.3.7-2), libidn2-dev (= 2.3.7-2), libimagequant0 (= 2.18.0-1+b1), libint2-2t64 (= 2.7.2-1.1), libint2-dev (= 2.7.2-1.1), libipt2 (= 2.0.6-1), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), libjbig0 (= 2.1-6.1+b1), libjpeg-dev (= 1:2.1.5-3), libjpeg62-turbo (= 1:2.1.5-3), libjpeg62-turbo-dev (= 1:2.1.5-3), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-mathjax (= 2.7.9+dfsg-1), libjs-sphinxdoc (= 7.3.7-4), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libjson-perl (= 4.10000-1), libjsoncpp25 (= 1.9.5-6+b2), libk5crypto3 (= 1.21.3-3), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.21.3-3), libkrb5support0 (= 1.21.3-3), liblab-gamut1 (= 2.42.4-1), liblapack3 (= 3.12.0-3), libldap-2.5-0 (= 2.5.18+dfsg-2+b1), liblerc4 (= 4.0.0+ds-4+b1), libllvm16t64 (= 1:16.0.6-27+b1), libllvm17t64 (= 1:17.0.6-15), liblsan0 (= 14.2.0-1), libltdl-dev (= 2.4.7-7+b1), libltdl7 (= 2.4.7-7+b1), liblua5.4-0 (= 5.4.6-3+b1), liblz4-1 (= 1.9.4-3), liblzf1 (= 3.6-4+b1), liblzma5 (= 5.6.2-2), libmaeparser1 (= 1.3.1-1+b1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-2), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libmunge2 (= 0.5.15-4), libmuparser2v5 (= 2.3.4-1), libncursesw6 (= 6.5-2), libnettle8t64 (= 3.10-1), libnghttp2-14 (= 1.62.1-2), libnghttp2-dev (= 1.62.1-2), libnghttp3-9 (= 1.4.0-1), libngtcp2-16 (= 1.6.0-1), libngtcp2-crypto-gnutls8 (= 1.6.0-1), libnl-3-200 (= 3.7.0-0.3), libnl-3-dev (= 3.7.0-0.3), libnl-route-3-200 (= 3.7.0-0.3), libnl-route-3-dev (= 3.7.0-0.3), libnorm1t64 (= 1.5.9+dfsg-3.1), libnuma-dev (= 2.0.18-1), libnuma1 (= 2.0.18-1), libopenmpi-dev (= 4.1.6-13.3), libopenmpi3t64 (= 4.1.6-13.3), libp11-kit-dev (= 0.25.5-2), libp11-kit0 (= 0.25.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpango-1.0-0 (= 1.54.0+ds-1), libpangocairo-1.0-0 (= 1.54.0+ds-1), libpangoft2-1.0-0 (= 1.54.0+ds-1), libpathplan4 (= 2.42.4-1), libpciaccess0 (= 0.17-3+b1), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-1), libpgm-5.3-0t64 (= 5.3.128~dfsg-2.1), libpipeline1 (= 1.5.7-2), libpixman-1-0 (= 0.42.2-1+b1), libpkgconf3 (= 1.8.1-3), libpmix-dev (= 5.0.3-2), libpmix2t64 (= 5.0.3-2), libpng16-16t64 (= 1.6.43-5), libproc2-0 (= 2:4.0.4-5), libpsl-dev (= 0.21.2-1.1), libpsl5t64 (= 0.21.2-1.1), libpsm-infinipath1 (= 3.3+20.604758e7-6.3), libpsm2-2 (= 11.2.185-2.1), libpugixml-dev (= 1.14-0.1+b1), libpugixml1v5 (= 1.14-0.1+b1), libpython3-dev (= 3.12.4-1), libpython3-stdlib (= 3.12.4-1), libpython3.12-dev (= 3.12.4-3), libpython3.12-minimal (= 3.12.4-3), libpython3.12-stdlib (= 3.12.4-3), libpython3.12t64 (= 3.12.4-3), libquadmath0 (= 14.2.0-1), libraqm0 (= 0.10.1-1+b1), librav1e0.7 (= 0.7.1-4), librdkit-dev (= 202309.3-4+b1), librdkit1t64 (= 202309.3-4+b1), librdmacm1t64 (= 52.0-2), libreadline8t64 (= 8.2-4), librhash0 (= 1.4.3-3+b1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b4), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-6), libsasl2-modules-db (= 2.1.28+dfsg1-6), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1+b4), libsepol2 (= 3.5-2+b1), libsframe1 (= 2.42.90.20240720-2), libsharpyuv0 (= 1.4.0-0.1), libsm6 (= 2:1.2.3-1+b1), libsmartcols1 (= 2.40.2-2), libsodium23 (= 1.0.18-1+b1), libsource-highlight-common (= 3.1.9-4.3), libsource-highlight4t64 (= 3.1.9-4.3), libsqlite3-0 (= 3.46.0-1), libsqlite3-dev (= 3.46.0-1), libssh2-1-dev (= 1.11.0-7), libssh2-1t64 (= 1.11.0-7), libssl-dev (= 3.3.1-2), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsvtav1enc2 (= 2.1.0+dfsg-2), libsystemd0 (= 256.4-2), libsz2 (= 1.1.3-1), libtasn1-6 (= 4.19.0-3+b2), libtasn1-6-dev (= 4.19.0-3+b2), libthai-data (= 0.1.29-2), libthai0 (= 0.1.29-2), libtiff6 (= 4.5.1+git230720-4), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libucx0 (= 1.17.0+ds-3), libudev1 (= 256.4-2), libunbound8 (= 1.20.0-1+b1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-2), libuv1t64 (= 1.48.0-5), libwebp7 (= 1.4.0-0.1), libwebpmux3 (= 1.4.0-0.1), libx11-6 (= 2:1.8.7-1+b1), libx11-data (= 2:1.8.7-1), libxapian30 (= 1.4.25-1), libxau6 (= 1:1.0.9-1+b1), libxaw7 (= 2:1.0.14-1+b2), libxc-dev (= 5.2.3-1+b1), libxc9 (= 5.2.3-1+b1), libxcb-render0 (= 1.17.0-2), libxcb-shm0 (= 1.17.0-2), libxcb1 (= 1.17.0-2), libxdmcp6 (= 1:1.1.2-3+b1), libxext6 (= 2:1.3.4-1+b1), libxml2 (= 2.12.7+dfsg-3+b1), libxmu6 (= 2:1.1.3-3+b2), libxnvctrl0 (= 535.171.04-1), libxpm4 (= 1:3.5.17-1+b1), libxrender1 (= 1:0.9.10-1.1+b1), libxslt1.1 (= 1.1.35-1.1), libxt6t64 (= 1:1.2.1-1.2), libxxhash0 (= 0.8.2-2+b1), libyaml-0-2 (= 0.2.5-1+b1), libyuv0 (= 0.0.1888.20240710-3), libz3-4 (= 4.8.12-3.1+b2), libzmq5 (= 4.3.5-1+b2), libzstd-dev (= 1.5.6+dfsg-1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), login (= 1:4.15.3-3), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), media-types (= 10.1.0), mpi-default-bin (= 1.17), mpi-default-dev (= 1.17), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), nettle-dev (= 3.10-1), ocl-icd-libopencl1 (= 2.3.2-1+b1), openmpi-bin (= 4.1.6-13.3), openmpi-common (= 4.1.6-13.3), openssh-client (= 1:9.8p1-2), openssl (= 3.3.1-2), pandoc (= 3.1.3+ds-3), pandoc-data (= 3.1.3-2), passwd (= 1:4.15.3-3), patch (= 2.7.6-7), perl (= 5.40.0-1), perl-base (= 5.40.0-1), perl-modules-5.40 (= 5.40.0-1), pkg-config (= 1.8.1-3), pkgconf (= 1.8.1-3), pkgconf-bin (= 1.8.1-3), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-5), pybind11-dev (= 2.12.0-1), python-babel-localedata (= 2.14.0-1), python-tinycss2-common (= 1.3.0-1), python3 (= 3.12.4-1), python3-alabaster (= 0.7.16-0.1), python3-asttokens (= 2.4.1-1), python3-attr (= 23.2.0-2), python3-babel (= 2.14.0-1), python3-bleach (= 6.1.0-2), python3-bs4 (= 4.12.3-1), python3-certifi (= 2024.6.2-1), python3-cffi-backend (= 1.16.0-2+b3), python3-chardet (= 5.2.0+dfsg-1), python3-charset-normalizer (= 3.3.2-2), python3-comm (= 0.2.1-1), python3-commonmark (= 0.9.1-6), python3-coverage (= 7.6.0+dfsg1-1), python3-dateutil (= 2.9.0-2), python3-debugpy (= 1.8.2+ds-5), python3-decorator (= 5.1.1-5), python3-defusedxml (= 0.7.1-2), python3-dev (= 3.12.4-1), python3-docutils (= 0.21.2+dfsg-2), python3-executing (= 2.0.1-0.1), python3-fastjsonschema (= 2.20.0-1), python3-h5py (= 3.11.0-5), python3-h5py-serial (= 3.11.0-5), python3-hatch-vcs (= 0.4.0-1), python3-hatchling (= 1.25.0-1), python3-html5lib (= 1.1-6), python3-idna (= 3.6-2.1), python3-imagesize (= 1.4.1-1), python3-iniconfig (= 1.1.1-2), python3-ipykernel (= 6.29.5-1), python3-ipython (= 8.20.0-1), python3-jedi (= 0.19.1+ds1-1), python3-jinja2 (= 3.1.3-1), python3-jsonschema (= 4.19.2-3), python3-jsonschema-specifications (= 2023.12.1-1), python3-jupyter-client (= 8.6.2-2), python3-jupyter-core (= 5.7.2-4), python3-jupyterlab-pygments (= 0.2.2-3), python3-lxml (= 5.2.2-1), python3-markupsafe (= 2.1.5-1+b1), python3-matplotlib-inline (= 0.1.6-2), python3-minimal (= 3.12.4-1), python3-mistune (= 3.0.2-1), python3-nbclient (= 0.8.0-1), python3-nbconvert (= 7.16.4-1), python3-nbformat (= 5.9.1-1), python3-nbsphinx (= 0.9.4+ds-1), python3-nest-asyncio (= 1.5.4-1), python3-numpy (= 1:1.26.4+ds-11), python3-packaging (= 24.1-1), python3-pandocfilters (= 1.5.1-1), python3-parso (= 0.8.3-1), python3-pathspec (= 0.12.1-1), python3-pexpect (= 4.9-2), python3-pkg-resources (= 70.3.0-2), python3-platformdirs (= 4.2.1-1), python3-pluggy (= 1.5.0-1), python3-prompt-toolkit (= 3.0.47-1), python3-psutil (= 5.9.8-2), python3-ptyprocess (= 0.7.0-5), python3-pure-eval (= 0.2.2-2), python3-py (= 1.11.0-2), python3-pygments (= 2.18.0+dfsg-1), python3-pytest (= 8.3.2-1), python3-rdkit (= 202309.3-4+b1), python3-recommonmark (= 0.7.1+ds-5), python3-referencing (= 0.31.0-1), python3-requests (= 2.32.3+dfsg-1), python3-roman (= 3.3-3), python3-rpds-py (= 0.12.0-3+b1), python3-setuptools (= 70.3.0-2), python3-setuptools-scm (= 8.1.0-1), python3-six (= 1.16.0-7), python3-snowballstemmer (= 2.2.0-4), python3-soupsieve (= 2.5-1), python3-sphinx (= 7.3.7-4), python3-sphinx-rtd-theme (= 2.0.0+dfsg-2), python3-sphinxcontrib.jquery (= 4.1-5), python3-stack-data (= 0.6.3-1), python3-tinycss2 (= 1.3.0-1), python3-tornado (= 6.4.1-1), python3-traitlets (= 5.14.3+really5.14.3-1), python3-trove-classifiers (= 2024.4.10-1), python3-typeshed (= 0.0~git20231111.6764465-3), python3-urllib3 (= 2.0.7-2), python3-wcwidth (= 0.2.13+dfsg1-1), python3-webencodings (= 0.5.1-5), python3-zmq (= 24.0.1-5+b2), python3.12 (= 3.12.4-3), python3.12-dev (= 3.12.4-3), python3.12-minimal (= 3.12.4-3), rdkit-data (= 202309.3-4), readline-common (= 8.2-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sgml-base (= 1.31), sphinx-common (= 7.3.7-4), sphinx-rtd-theme-common (= 2.0.0+dfsg-2), sse4.2-support (= 24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), txt2tags (= 3.4-4), tzdata (= 2024a-4), ucf (= 3.0043+nmu1), usr-is-merged (= 39), util-linux (= 2.40.2-2), x11-common (= 1:7.7+23.1), xml-core (= 0.19), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1709178752" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libvotca-2024-dbgsym_2024-2_amd64.deb ------------------------------------- new Debian package, version 2.0. size 151634556 bytes: control archive=704 bytes. 468 bytes, 13 lines control 408 bytes, 4 lines md5sums Package: libvotca-2024-dbgsym Source: votca Version: 2024-2 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debichem Team Installed-Size: 150484 Depends: libvotca-2024 (= 2024-2) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libvotca-2024 Build-Ids: 26f69f6d354f69dd01e13b27c1105abe1c390ebe 8279a9ef61633155bcdafa0e3c2096cd038b2aca eb4bfe6145fa2bbd15a33623dc84b449eb289801 drwxr-xr-x root/root 0 2024-02-29 03:52 ./ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/debug/.build-id/26/ -rw-r--r-- root/root 124454592 2024-02-29 03:52 ./usr/lib/debug/.build-id/26/f69f6d354f69dd01e13b27c1105abe1c390ebe.debug drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/debug/.build-id/82/ -rw-r--r-- root/root 21257944 2024-02-29 03:52 ./usr/lib/debug/.build-id/82/79a9ef61633155bcdafa0e3c2096cd038b2aca.debug drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/debug/.build-id/eb/ -rw-r--r-- root/root 8139000 2024-02-29 03:52 ./usr/lib/debug/.build-id/eb/4bfe6145fa2bbd15a33623dc84b449eb289801.debug drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 228328 2024-02-29 03:52 ./usr/lib/debug/.dwz/x86_64-linux-gnu/libvotca-2024.debug drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/share/ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-02-29 03:52 ./usr/share/doc/libvotca-2024-dbgsym -> libvotca-2024 libvotca-2024_2024-2_amd64.deb ------------------------------ new Debian package, version 2.0. size 13074484 bytes: control archive=1192 bytes. 982 bytes, 19 lines control 547 bytes, 7 lines md5sums 128 bytes, 3 lines shlibs 66 bytes, 2 lines triggers Package: libvotca-2024 Source: votca Version: 2024-2 Architecture: amd64 Maintainer: Debichem Team Installed-Size: 31001 Depends: libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.38), libexpat1 (>= 2.0.1), libfftw3-double3 (>= 3.3.10), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libgromacs9 (>= 2024.2), libhdf5-103-1t64, libhdf5-cpp-103-1t64 (>= 1.10.8), libint2-2t64, libpugixml1v5 (>= 1.4), libstdc++6 (>= 14) Section: libs Priority: optional Multi-Arch: same Homepage: https://www.votca.org/ Description: VOTCA molecular dynamics analysis - shared libraries Versatile Object-Oriented Toolkit for Coarse-Graining Applications (VOTCA) is a modeling package for the analysis of molecular dynamics data, the development of systematic coarse-graining techniques, and methods used for simulating microscopic charge transport in disordered semiconductors. . libvotca contains VOTCA's coarse-graining and excitation transport libraries. drwxr-xr-x root/root 0 2024-02-29 03:52 ./ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 1401376 2024-02-29 03:52 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144832 bytes: control archive=7408 bytes. 1055 bytes, 21 lines control 18489 bytes, 255 lines md5sums Package: libvotca-dev Source: votca Version: 2024-2 Architecture: amd64 Maintainer: Debichem Team Installed-Size: 957 Depends: libboost-filesystem-dev, libboost-program-options-dev, libboost-system-dev, libvotca-2024 (= 2024-2) Breaks: libvotca-csg-dev (<< 2022~), libvotca-tools-dev (<< 2022~), libvotca-xtp-dev (<< 2022~) Replaces: libvotca-csg-dev (<< 2022~), libvotca-tools-dev (<< 2022~), libvotca-xtp-dev (<< 2022~) Provides: libvotca-csg-dev, libvotca-tools-dev, libvotca-xtp-dev Section: libdevel Priority: optional Homepage: https://www.votca.org/ Description: VOTCA molecular dynamics analysis - development files Versatile Object-Oriented Toolkit for Coarse-Graining Applications (VOTCA) is a modeling package for the analysis of molecular dynamics data, the development of systematic coarse-graining techniques, and methods used for simulating microscopic charge transport in disordered semiconductors. . 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./usr/include/votca/csg/map.h -rw-r--r-- root/root 3185 2024-01-22 22:58 ./usr/include/votca/csg/molecule.h -rw-r--r-- root/root 1309 2024-01-22 22:58 ./usr/include/votca/csg/moleculeitem.h -rw-r--r-- root/root 5756 2024-01-22 22:58 ./usr/include/votca/csg/nblist.h -rw-r--r-- root/root 8307 2024-01-22 22:58 ./usr/include/votca/csg/nblist_3body.h -rw-r--r-- root/root 1763 2024-01-22 22:58 ./usr/include/votca/csg/nblistgrid.h -rw-r--r-- root/root 2092 2024-01-22 22:58 ./usr/include/votca/csg/nblistgrid_3body.h -rw-r--r-- root/root 1467 2024-01-22 22:58 ./usr/include/votca/csg/nematicorder.h -rw-r--r-- root/root 1286 2024-01-22 22:58 ./usr/include/votca/csg/openbox.h -rw-r--r-- root/root 1347 2024-01-22 22:58 ./usr/include/votca/csg/orthorhombicbox.h -rw-r--r-- root/root 4204 2024-01-22 22:58 ./usr/include/votca/csg/pairlist.h -rw-r--r-- root/root 3639 2024-01-22 22:58 ./usr/include/votca/csg/pdbwriter.h -rw-r--r-- root/root 2929 2024-01-22 22:58 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22:58 ./usr/include/votca/xtp/davidsonsolver.h -rw-r--r-- root/root 1815 2024-01-22 22:58 ./usr/include/votca/xtp/density_integration.h -rw-r--r-- root/root 2219 2024-01-22 22:58 ./usr/include/votca/xtp/dftcoupling.h -rw-r--r-- root/root 5967 2024-01-22 22:58 ./usr/include/votca/xtp/dftengine.h -rw-r--r-- root/root 1324 2024-01-22 22:58 ./usr/include/votca/xtp/diis.h -rw-r--r-- root/root 5681 2024-01-22 22:58 ./usr/include/votca/xtp/dipoledipoleinteraction.h -rw-r--r-- root/root 2395 2024-01-22 22:58 ./usr/include/votca/xtp/ecpaobasis.h -rw-r--r-- root/root 3935 2024-01-22 22:58 ./usr/include/votca/xtp/ecpbasisset.h -rw-r--r-- root/root 3525 2024-01-22 22:58 ./usr/include/votca/xtp/eeinteractor.h -rw-r--r-- root/root 4513 2024-01-22 22:58 ./usr/include/votca/xtp/eigen.h -rw-r--r-- root/root 2769 2024-01-22 22:58 ./usr/include/votca/xtp/energy_terms.h -rw-r--r-- root/root 2298 2024-01-22 22:58 ./usr/include/votca/xtp/erdiabatization.h -rw-r--r-- root/root 2259 2024-01-22 22:58 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root/root 2575 2024-01-22 22:58 ./usr/include/votca/xtp/gwbseengine.h -rw-r--r-- root/root 1574 2024-01-22 22:58 ./usr/include/votca/xtp/gyration.h -rw-r--r-- root/root 3155 2024-01-22 22:58 ./usr/include/votca/xtp/hist.h -rw-r--r-- root/root 7958 2024-01-22 22:58 ./usr/include/votca/xtp/huffmantree.h -rw-r--r-- root/root 4712 2024-01-22 22:58 ./usr/include/votca/xtp/job.h -rw-r--r-- root/root 1977 2024-01-22 22:58 ./usr/include/votca/xtp/jobcalculator.h -rw-r--r-- root/root 1247 2024-01-22 22:58 ./usr/include/votca/xtp/jobcalculatorfactory.h -rw-r--r-- root/root 3582 2024-01-22 22:58 ./usr/include/votca/xtp/jobtopology.h -rw-r--r-- root/root 2750 2024-01-22 22:58 ./usr/include/votca/xtp/kmccalculator.h -rw-r--r-- root/root 6574 2024-01-22 22:58 ./usr/include/votca/xtp/logger.h -rw-r--r-- root/root 1010 2024-01-22 22:58 ./usr/include/votca/xtp/make_libint_work.h -rw-r--r-- root/root 2928 2024-01-22 22:58 ./usr/include/votca/xtp/matrixfreeoperator.h -rw-r--r-- root/root 1604 2024-01-22 22:58 ./usr/include/votca/xtp/md2qmengine.h -rw-r--r-- root/root 2609 2024-01-22 22:58 ./usr/include/votca/xtp/mmregion.h -rw-r--r-- root/root 2711 2024-01-22 22:58 ./usr/include/votca/xtp/molden.h -rw-r--r-- root/root 1020 2024-01-22 22:58 ./usr/include/votca/xtp/nbo.h -rw-r--r-- root/root 2229 2024-01-22 22:58 ./usr/include/votca/xtp/newton_rapson.h -rw-r--r-- root/root 6578 2024-01-22 22:58 ./usr/include/votca/xtp/openmp_cuda.h -rw-r--r-- root/root 1432 2024-01-22 22:58 ./usr/include/votca/xtp/optimiser_costfunction.h -rw-r--r-- root/root 15764 2024-01-22 22:58 ./usr/include/votca/xtp/orbitals.h -rw-r--r-- root/root 2349 2024-01-22 22:58 ./usr/include/votca/xtp/orbreorder.h -rw-r--r-- root/root 1838 2024-01-22 22:58 ./usr/include/votca/xtp/paircalculator.h -rw-r--r-- root/root 3565 2024-01-22 22:58 ./usr/include/votca/xtp/parallelxjobcalc.h -rw-r--r-- root/root 3789 2024-01-22 22:58 ./usr/include/votca/xtp/pmlocalization.h -rw-r--r-- root/root 2645 2024-01-22 22:58 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22:58 ./usr/include/votca/xtp/segmentmapper.h -rw-r--r-- root/root 2618 2024-01-22 22:58 ./usr/include/votca/xtp/sigma_base.h -rw-r--r-- root/root 1294 2024-01-22 22:58 ./usr/include/votca/xtp/sigmafactory.h -rw-r--r-- root/root 5256 2024-01-22 22:58 ./usr/include/votca/xtp/sphere_lebedev_rule.h -rw-r--r-- root/root 1462 2024-01-22 22:58 ./usr/include/votca/xtp/stateapplication.h -rw-r--r-- root/root 2340 2024-01-22 22:58 ./usr/include/votca/xtp/statefilter_base.h -rw-r--r-- root/root 1277 2024-01-22 22:58 ./usr/include/votca/xtp/statesaver.h -rw-r--r-- root/root 2053 2024-01-22 22:58 ./usr/include/votca/xtp/statetracker.h -rw-r--r-- root/root 1834 2024-01-22 22:58 ./usr/include/votca/xtp/staticregion.h -rw-r--r-- root/root 3728 2024-01-22 22:58 ./usr/include/votca/xtp/staticsite.h -rw-r--r-- root/root 2124 2024-01-22 22:58 ./usr/include/votca/xtp/symmetric_matrix.h -rw-r--r-- root/root 3479 2024-01-22 22:58 ./usr/include/votca/xtp/threecenter.h -rw-r--r-- root/root 1152 2024-01-22 22:58 ./usr/include/votca/xtp/toolfactory.h -rw-r--r-- root/root 3212 2024-01-22 22:58 ./usr/include/votca/xtp/topology.h -rw-r--r-- root/root 1789 2024-01-22 22:58 ./usr/include/votca/xtp/transition_densities.h -rw-r--r-- root/root 2437 2024-01-22 22:58 ./usr/include/votca/xtp/trustregion.h -rw-r--r-- root/root 1556 2024-01-22 22:58 ./usr/include/votca/xtp/vc2index.h -rw-r--r-- root/root 1043 2024-01-22 22:58 ./usr/include/votca/xtp/version.h -rw-r--r-- root/root 1019 2024-02-29 03:52 ./usr/include/votca/xtp/votca_xtp_config.h -rw-r--r-- root/root 11846 2024-01-22 22:58 ./usr/include/votca/xtp/vxc_functionals.h -rw-r--r-- root/root 3118 2024-01-22 22:58 ./usr/include/votca/xtp/vxc_grid.h -rw-r--r-- root/root 1935 2024-01-22 22:58 ./usr/include/votca/xtp/vxc_potential.h -rw-r--r-- root/root 2105 2024-01-22 22:58 ./usr/include/votca/xtp/xtpapplication.h drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x 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./usr/share/votca/template/ -rw-r--r-- root/root 486 2024-01-22 22:58 ./usr/share/votca/template/CMakeLists.txt -rw-r--r-- root/root 2151 2024-01-22 22:58 ./usr/share/votca/template/template_serial.cc -rw-r--r-- root/root 6343 2024-01-22 22:58 ./usr/share/votca/template/template_threaded.cc votca-data_2024-2_all.deb ------------------------- new Debian package, version 2.0. size 3816912 bytes: control archive=17932 bytes. 993 bytes, 23 lines control 67671 bytes, 706 lines md5sums Package: votca-data Source: votca Version: 2024-2 Architecture: all Maintainer: Debichem Team Installed-Size: 18568 Depends: bash (>= 4) Recommends: perl, python3:any, perl:any, libjs-sphinxdoc (>= 7.3), sphinx-rtd-theme-common (>= 2.0.0+dfsg) Breaks: votca-csg-scripts (<< 2022~), votca-xtp (<< 2022~) Replaces: votca-csg-scripts (<< 2022~), votca-xtp (<< 2022~) Provides: votca-csg-scripts Built-Using: sphinx (= 7.3.7-4) Section: science Priority: optional Homepage: https://www.votca.org/ Description: VOTCA molecular dynamics analysis - basis sets and scripts Versatile Object-Oriented Toolkit for Coarse-Graining Applications (VOTCA) is a modeling package for the analysis of molecular dynamics data, the development of systematic coarse-graining techniques, and methods used for simulating microscopic charge transport in disordered semiconductors. . 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./usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aldehydes_ketones_and_amides/formamide.xyz -rw-r--r-- root/root 507 2024-01-22 22:58 ./usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aldehydes_ketones_and_amides/propanamide.xyz drwxr-xr-x root/root 0 2024-02-29 03:52 ./usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/ -rw-r--r-- root/root 503 2024-01-22 22:58 ./usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/benzene.xyz -rw-r--r-- root/root 377 2024-01-22 22:58 ./usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/furan.xyz -rw-r--r-- root/root 381 2024-01-22 22:58 ./usr/share/votca/xtp/benchmark/Geometries/Geometries_ThielSet/aromatic_hydrocarbons_and_heterocycles/imidazole.xyz -rw-r--r-- root/root 753 2024-01-22 22:58 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------------------------------ new Debian package, version 2.0. size 18231968 bytes: control archive=12904 bytes. 907 bytes, 22 lines control 69197 bytes, 699 lines md5sums Package: votca-tutorials Source: votca Version: 2024-2 Architecture: all Maintainer: Debichem Team Installed-Size: 81510 Depends: bash (>= 4) Recommends: python3:any Breaks: votca-csg-tutorials (<< 2022~), votca-xtp-tutorials (<< 2022~) Replaces: votca-csg-tutorials (<< 2022~), votca-xtp-tutorials (<< 2022~) Provides: votca-csg-tutorials, votca-xtp-tutorials Section: science Priority: optional Multi-Arch: foreign Homepage: https://www.votca.org/ Description: VOTCA molecular dynamics analysis - tutorials Versatile Object-Oriented Toolkit for Coarse-Graining Applications (VOTCA) is a modeling package for the analysis of molecular dynamics data, the development of systematic coarse-graining techniques, and methods used for simulating microscopic charge transport in disordered semiconductors. . 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Recommends: python3:any Suggests: votca-tutorials Breaks: votca-csg (<< 2022~), votca-tools (<< 2022~), votca-xtp (<< 2022~) Replaces: votca-csg (<< 2022~), votca-tools (<< 2022~), votca-xtp (<< 2022~) Provides: votca-csg, votca-tools, votca-xtp Section: science Priority: optional Homepage: https://www.votca.org/ Description: Molecular dynamics analysis - coarse-graining and charge transport Versatile Object-Oriented Toolkit for Coarse-Graining Applications (VOTCA) is a modeling package for the analysis of molecular dynamics data, the development of systematic coarse-graining techniques, and methods used for simulating microscopic charge transport in disordered semiconductors. . Numerous molecular dynamics packages, including but not limited to GROMACS, ESPREesSo, and LAMPPS, can be used together with VOTCA. . 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 6171828 Build-Time: 3660 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 214 Job: /srv/debomatic/incoming/votca_2024-2.dsc Machine Architecture: amd64 Package: votca Package-Time: 3890 Source-Version: 2024-2 Space: 6171828 Status: successful Version: 2024-2 -------------------------------------------------------------------------------- Finished at 2024-08-05T05:39:12Z Build needed 01:04:50, 6171828k disk space