sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | vcftools 0.1.16-3 (amd64) Mon, 16 Sep 2024 22:06:57 +0000 | +==============================================================================+ Package: vcftools Version: 0.1.16-3 Source Version: 0.1.16-3 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-89d1212a-a9bf-4205-8583-548e3c41044b' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup vcftools_0.1.16-3 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup vcftools_0.1.16-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/vcftools-jMYhWz/resolver-nQHIs1' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:2 http://localhost:3142/debian sid InRelease [202 kB] Get:3 http://deb.debian.org/debian unstable InRelease [202 kB] Get:4 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://localhost:3142/debian sid/main Sources T-2024-09-16-2023.07-F-2024-09-16-2023.07.pdiff [35.7 kB] Get:6 http://localhost:3142/debian sid/main Sources T-2024-09-16-2023.07-F-2024-09-16-2023.07.pdiff [35.7 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-09-16-2023.07-F-2024-09-16-2023.07.pdiff [35.1 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-09-16-2023.07-F-2024-09-16-2023.07.pdiff [35.1 kB] Fetched 602 kB in 7s (86.1 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgpg-error0 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 81.6 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.50-4 [81.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 81.6 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22986 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.50-4_amd64.deb ... Unpacking libgpg-error0:amd64 (1.50-4) over (1.50-3) ... Setting up libgpg-error0:amd64 (1.50-4) ... Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/vcftools_0.1.16-3.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/vcftools-jMYhWz/vcftools-0.1.16' with '<>' I: NOTICE: Log filtering will replace 'build/vcftools-jMYhWz' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkg-config, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), pkg-config, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [641 B] Get:5 copy:/<>/apt_archive ./ Packages [673 B] Fetched 1923 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libpkgconf3 libtool libuchardet0 libxml2 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libpkgconf3 libtool libuchardet0 libxml2 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 20.9 MB of archives. After this operation, 77.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [896 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-3 [36.2 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-3 [29.9 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-3 [26.1 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-3 [13.9 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.9 MB in 0s (106 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22986 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-8_amd64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.191-2_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg-3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg-3+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libfakeroot:amd64. Preparing to unpack .../29-libfakeroot_1.36-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.36-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../30-fakeroot_1.36-1_amd64.deb ... Unpacking fakeroot (1.36-1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../31-libpkgconf3_1.8.1-3_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-3) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../32-pkgconf-bin_1.8.1-3_amd64.deb ... Unpacking pkgconf-bin (1.8.1-3) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../33-pkgconf_1.8.1-3_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-3) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../34-pkg-config_1.8.1-3_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../35-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../36-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:amd64 (1.8.1-3) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up pkgconf:amd64 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pkg-config:amd64 (1.8.1-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-5 gcc-13_13.3.0-6 gcc-14_14.2.0-5 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-5 cpp-14-x86-64-linux-gnu_14.2.0-5 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-5 g++-14-x86-64-linux-gnu_14.2.0-5 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-5 gcc-14-base_14.2.0-5 gcc-14-x86-64-linux-gnu_14.2.0-5 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8+b1 gpg_2.2.43-8+b1 gpg-agent_2.2.43-8+b1 gpg-wks-client_2.2.43-8+b1 gpgconf_2.2.43-8+b1 gpgsm_2.2.43-8+b1 gpgv_2.2.43-8+b1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-5 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-5 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-4 libblkid1_2.40.2-8 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-6 libc-bin_2.40-2 libc-dev-bin_2.40-2 libc-l10n_2.40-2 libc6_2.40-2 libc6-dev_2.40-2 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-5 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-4 libctf0_2.43.1-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-6 libgcc-14-dev_14.2.0-5 libgcc-s1_14.2.0-5 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-5 libgpg-error0_1.50-4 libgprofng0_2.43.1-4 libhogweed6t64_3.10-1 libhwasan0_14.2.0-5 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-5 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-3+b1 liblsan0_14.2.0-5 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-5 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-3 libquadmath0_14.2.0-5 libreadline8t64_8.2-5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-4 libsmartcols1_2.40.2-8 libsqlite3-0_3.46.1-1 libssl3t64_3.3.2-1 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-5 libubsan1_14.2.0-5 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunistring5_1.2-1 libuuid1_2.40.2-8 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.9-1 locales-all_2.40-2 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 pinentry-curses_1.2.1-4+b1 pkg-config_1.8.1-3 pkgconf_1.8.1-3 pkgconf-bin_1.8.1-3 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vcftools Binary: vcftools Architecture: any Version: 0.1.16-3 Maintainer: Debian Med Packaging Team Uploaders: Thorsten Alteholz , Andreas Tille Homepage: https://vcftools.github.io/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/vcftools Vcs-Git: https://salsa.debian.org/med-team/vcftools.git Testsuite: autopkgtest Testsuite-Triggers: libtest-most-perl, tabix Build-Depends: debhelper-compat (= 13), pkg-config, zlib1g-dev Package-List: vcftools deb science optional arch=any Checksums-Sha1: f80b58da5ac19bbafb2404d4878374dcbd6c98a7 244585 vcftools_0.1.16.orig.tar.gz a4936e15f603f6444e37d0cd7048f96cea3a10d7 13968 vcftools_0.1.16-3.debian.tar.xz Checksums-Sha256: 8255da4c9627b63fa43a006234fb4a1d160c63207a3f6df68ff9149f50cfb81e 244585 vcftools_0.1.16.orig.tar.gz 45443fb86bc37c71fc7f4cf2137cef7656ea06d97fdd2cdb549c34555ec88919 13968 vcftools_0.1.16-3.debian.tar.xz Files: 4b96ec3a1dedeb879a71ecb0c4578548 244585 vcftools_0.1.16.orig.tar.gz 781ec5bc24d85bd9bd2142fabc25a799 13968 vcftools_0.1.16-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFejpYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGw2A//WYgC4unPNzKBrPLKIumdgdq/Fpp3MfKF qM0M/walrHRTRcMGd8F8WpGquu5Aeda0njVN9IQeKvNXVMaonOqx001OPwHz/RIP QJADPmgdaF9PK5k90L08WydhngNocq23LL9rTJIj8+DsBM2r5iy5BK9jYMM7YVhe r5ZJxxtsVVz2xsFe5dCp8In16jX5AN+4yNPo5L+Wsl6RjkPujzyVgjYOWSJwQjal CHDJP3+njSKw4fWHQK3+if9EF5OE4iDrYJYR1frY4VJpi0JgbasHx+24yBknPA/X O5hLxe7sy/ibIUQt8csTQFf0yNrEF9634TQLcQfxgk6+NQ95AqOot1jtfIdUb9+u WjQYLkCtmV0Wu/bQjSwjBOVXFE+yLHW+JRHUx63Lmbrqqt8vbY9F26W32JAqC7X0 EZhiCJvQiwrFc4P4GNaa7wOLRNSxj90C1xaK0oaboUeCY0V9xoEJb8sQGob2YdB4 7eTbWo9kjw6KPAUju87JtmdXJ3HcSbYQtIfJTXA2iInZSIj7D485T1hHEWK1bxm0 QsDOuGvEpf4+quL69/4gsm0e5bKtJaZ4vpKxZrKRJV7cmxfnpv3PIc8x9JapXGOg nXrzpQO6FrHF7CQkWwF36SGLD+dd9O2Y8gsGnDfoPmodWxyEaaCR96vv+vpm7R6R QQ4D9A1qLzA= =fhdb -----END PGP SIGNATURE----- gpgv: Signature made Thu Oct 7 06:07:18 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./vcftools_0.1.16-3.dsc: no acceptable signature found dpkg-source: info: extracting vcftools in /<> dpkg-source: info: unpacking vcftools_0.1.16.orig.tar.gz dpkg-source: info: unpacking vcftools_0.1.16-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying temporary_test_fix.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying manpage.patch dpkg-source: info: applying 0001-vcf-fix-ploidy-make-p-work-without-.-on-INC.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network vcftools_0.1.16-3 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network vcftools_0.1.16-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-89d1212a-a9bf-4205-8583-548e3c41044b SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package vcftools dpkg-buildpackage: info: source version 0.1.16-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/vcftools.substvars debian/files rm -fr -- debian/vcftools/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building vcftools using existing ./vcftools_0.1.16.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building vcftools in vcftools_0.1.16-3.debian.tar.xz dpkg-source: info: building vcftools in vcftools_0.1.16-3.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:16: installing './compile' configure.ac:66: installing './config.guess' configure.ac:66: installing './config.sub' configure.ac:12: installing './install-sh' configure.ac:12: installing './missing' src/cpp/Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --with-pmdir=/share/perl5 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-pmdir=/share/perl5 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for perl... /usr/bin/perl checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for arpa/inet.h... yes checking for fcntl.h... yes checking for limits.h... yes checking for netdb.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/socket.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for int8_t... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking for gcc option to enable large file support... none needed checking for error_at_line... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for gethostbyaddr... yes checking for gethostbyname... yes checking for memset... yes checking for pow... no checking for select... yes checking for socket... yes checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strstr... yes checking for strtol... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/cpp/Makefile config.status: creating src/perl/Makefile config.status: creating config.h config.status: executing depfiles commands make[1]: Leaving directory '/<>' dh_auto_build make -j2 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' Making all in cpp make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-bcf_entry.o `test -f 'bcf_entry.cpp' || echo './'`bcf_entry.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-bcf_entry_setters.o `test -f 'bcf_entry_setters.cpp' || echo './'`bcf_entry_setters.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-bcf_file.o `test -f 'bcf_file.cpp' || echo './'`bcf_file.cpp gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-bgzf.o `test -f 'bgzf.c' || echo './'`bgzf.c bgzf.c: In function ‘bgzf_check_EOF’: bgzf.c:60:34: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 60 | #define _bgzf_read(fp, buf, len) fread((buf), 1, (len), (FILE*)(fp)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bgzf.c:622:9: note: in expansion of macro ‘_bgzf_read’ 622 | _bgzf_read(fp->fp, buf, 28); | ^~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-dgeev.o `test -f 'dgeev.cpp' || echo './'`dgeev.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-entry.o `test -f 'entry.cpp' || echo './'`entry.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-entry_filters.o `test -f 'entry_filters.cpp' || echo './'`entry_filters.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-entry_getters.o `test -f 'entry_getters.cpp' || echo './'`entry_getters.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-entry_setters.o `test -f 'entry_setters.cpp' || echo './'`entry_setters.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-gamma.o `test -f 'gamma.cpp' || echo './'`gamma.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-header.o `test -f 'header.cpp' || echo './'`header.cpp gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-knetfile.o `test -f 'knetfile.c' || echo './'`knetfile.c In file included from knetfile.c:46: knetfile.c: In function ‘kftp_send_cmd’: knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ knetfile.c:236:9: note: in expansion of macro ‘netwrite’ 236 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); | ^~~~~~~~ knetfile.c: In function ‘khttp_connect_file’: knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ knetfile.c:415:9: note: in expansion of macro ‘netwrite’ 415 | netwrite(fp->fd, buf, l); | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-output_log.o `test -f 'output_log.cpp' || echo './'`output_log.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-parameters.o `test -f 'parameters.cpp' || echo './'`parameters.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-variant_file.o `test -f 'variant_file.cpp' || echo './'`variant_file.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-variant_file_diff.o `test -f 'variant_file_diff.cpp' || echo './'`variant_file_diff.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-variant_file_filters.o `test -f 'variant_file_filters.cpp' || echo './'`variant_file_filters.cpp variant_file_filters.cpp: In member function ‘void variant_file::filter_individuals_randomly(int)’: variant_file_filters.cpp:129:23: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 129 | random_shuffle(keep_index.begin(), keep_index.end()); // Get a random order | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/algorithm:61, from variant_file.h:15, from variant_file_filters.cpp:7: /usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here 4491 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-variant_file_format_convert.o `test -f 'variant_file_format_convert.cpp' || echo './'`variant_file_format_convert.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-variant_file_output.o `test -f 'variant_file_output.cpp' || echo './'`variant_file_output.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-vcf_entry.o `test -f 'vcf_entry.cpp' || echo './'`vcf_entry.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-vcf_entry_setters.o `test -f 'vcf_entry_setters.cpp' || echo './'`vcf_entry_setters.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-vcf_file.o `test -f 'vcf_file.cpp' || echo './'`vcf_file.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o vcftools-vcftools.o `test -f 'vcftools.cpp' || echo './'`vcftools.cpp g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o vcftools vcftools-bcf_entry.o vcftools-bcf_entry_setters.o vcftools-bcf_file.o vcftools-bgzf.o vcftools-dgeev.o vcftools-entry.o vcftools-entry_filters.o vcftools-entry_getters.o vcftools-entry_setters.o vcftools-gamma.o vcftools-header.o vcftools-knetfile.o vcftools-output_log.o vcftools-parameters.o vcftools-variant_file.o vcftools-variant_file_diff.o vcftools-variant_file_filters.o vcftools-variant_file_format_convert.o vcftools-variant_file_output.o vcftools-vcf_entry.o vcftools-vcf_entry_setters.o vcftools-vcf_file.o vcftools-vcftools.o -lz make[4]: Leaving directory '/<>/src/cpp' Making all in perl make[4]: Entering directory '/<>/src/perl' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/src/perl' make[4]: Entering directory '/<>/src' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j2 check "TESTSUITEFLAGS=-j2 --verbose" VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' Making check in cpp make[3]: Entering directory '/<>/src/cpp' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/cpp' Making check in perl make[3]: Entering directory '/<>/src/perl' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/perl' make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -fr -- /tmp/dh-xdg-rundir-xg1OlJ3C create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/vcftools.substvars rm -fr -- debian/.debhelper/generated/vcftools/ debian/vcftools/ debian/tmp/ dh_auto_install --destdir=debian/vcftools/ install -m0755 -d /<>/debian/vcftools make -j2 install DESTDIR=/<>/debian/vcftools AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' Making install in cpp make[3]: Entering directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' /usr/bin/mkdir -p '/<>/debian/vcftools/usr/bin' /usr/bin/mkdir -p '/<>/debian/vcftools/usr/share/man/man1' /usr/bin/install -c vcftools '/<>/debian/vcftools/usr/bin' /usr/bin/install -c -m 644 vcftools.1 '/<>/debian/vcftools/usr/share/man/man1' make[4]: Leaving directory '/<>/src/cpp' make[3]: Leaving directory '/<>/src/cpp' Making install in perl make[3]: Entering directory '/<>/src/perl' make[4]: Entering directory '/<>/src/perl' /usr/bin/mkdir -p '/<>/debian/vcftools/usr/bin' /usr/bin/mkdir -p '/<>/debian/vcftools/usr//share/perl5' /usr/bin/install -c -m 644 FaSlice.pm Vcf.pm VcfStats.pm '/<>/debian/vcftools/usr//share/perl5' /usr/bin/install -c fill-aa fill-an-ac fill-fs fill-ref-md5 vcf-annotate vcf-compare vcf-concat vcf-consensus vcf-contrast vcf-convert vcf-fix-newlines vcf-fix-ploidy vcf-indel-stats vcf-isec vcf-merge vcf-phased-join vcf-query vcf-shuffle-cols vcf-sort vcf-stats vcf-subset vcf-to-tab vcf-tstv vcf-validator '/<>/debian/vcftools/usr/bin' make[4]: Leaving directory '/<>/src/perl' make[3]: Leaving directory '/<>/src/perl' make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -f debian/vcftools.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/<>' dh_installdocs install -m0755 -d debian/vcftools/usr/share/doc/vcftools install -m0755 -d debian/vcftools/usr/share/doc/vcftools cp --reflink=auto -a ./debian/README.test debian/vcftools/usr/share/doc/vcftools cp --reflink=auto -a ./debian/tests/run-unit-test debian/vcftools/usr/share/doc/vcftools chmod -R u\+rw,go=rX debian/vcftools/usr/share/doc install -p -m0644 debian/copyright debian/vcftools/usr/share/doc/vcftools/copyright rm -f debian/vcftools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs src/perl/ChangeLog install -m0755 -d debian/vcftools/usr/share/doc/vcftools install -p -m0644 debian/.debhelper/generated/vcftools/dh_installchangelogs.dch.trimmed debian/vcftools/usr/share/doc/vcftools/changelog.Debian install -p -m0644 src/perl/ChangeLog debian/vcftools/usr/share/doc/vcftools/changelog make[1]: Leaving directory '/<>' rm -f debian/vcftools.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples; mkdir -p /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite; mkdir -p /<>/debian/vcftools/usr/share/doc/vcftools/examples/testdata; cp ./examples/* /<>/debian/vcftools/usr/share/doc/vcftools/examples/testdata/; find ./src/perl/ \( -name "*.pm" -o -name "*fill*" -o -name "test.t" \) -exec cp \{\} /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite \; sed -i 's#examples#testdata#g' /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; sed -i 's#I\.\./perl/#I\.\./\.#g' /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; sed -i 's#\.\./perl/#/usr/bin/#g' /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; for perlscript in `grep -lR '#!/usr/bin/env \+perl' debian/*/usr/share/doc/vcftools/examples` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/<>' dh_installman install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-aa.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-fs.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-compare.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-concat.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-isec.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-query.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-stats.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-subset.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./debian/mans/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 install -m0755 -d debian/vcftools/usr/share/man/man1/ install -p -m0644 ./src/cpp/vcftools.1 debian/vcftools/usr/share/man/man1/vcftools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcftools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/vcftools/usr/share/man/man1/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 mv debian/vcftools/usr/share/man/man1/vcf-indel-stats.1.dh-new debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 mv debian/vcftools/usr/share/man/man1/vcf-isec.1.dh-new debian/vcftools/usr/share/man/man1/vcf-isec.1 mv debian/vcftools/usr/share/man/man1/vcf-merge.1.dh-new debian/vcftools/usr/share/man/man1/vcf-merge.1 mv debian/vcftools/usr/share/man/man1/vcf-phased-join.1.dh-new debian/vcftools/usr/share/man/man1/vcf-phased-join.1 mv debian/vcftools/usr/share/man/man1/vcf-query.1.dh-new debian/vcftools/usr/share/man/man1/vcf-query.1 mv debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1.dh-new debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 mv debian/vcftools/usr/share/man/man1/vcf-sort.1.dh-new debian/vcftools/usr/share/man/man1/vcf-sort.1 mv debian/vcftools/usr/share/man/man1/vcf-stats.1.dh-new debian/vcftools/usr/share/man/man1/vcf-stats.1 mv debian/vcftools/usr/share/man/man1/vcf-subset.1.dh-new debian/vcftools/usr/share/man/man1/vcf-subset.1 mv debian/vcftools/usr/share/man/man1/vcf-to-tab.1.dh-new debian/vcftools/usr/share/man/man1/vcf-to-tab.1 mv debian/vcftools/usr/share/man/man1/vcf-tstv.1.dh-new debian/vcftools/usr/share/man/man1/vcf-tstv.1 mv debian/vcftools/usr/share/man/man1/vcf-validator.1.dh-new debian/vcftools/usr/share/man/man1/vcf-validator.1 mv debian/vcftools/usr/share/man/man1/vcftools.1.dh-new debian/vcftools/usr/share/man/man1/vcftools.1 chmod 0644 -- debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcftools.1 mv debian/vcftools/usr/share/man/man1/fill-aa.1.dh-new debian/vcftools/usr/share/man/man1/fill-aa.1 mv debian/vcftools/usr/share/man/man1/fill-an-ac.1.dh-new debian/vcftools/usr/share/man/man1/fill-an-ac.1 mv debian/vcftools/usr/share/man/man1/fill-fs.1.dh-new debian/vcftools/usr/share/man/man1/fill-fs.1 mv debian/vcftools/usr/share/man/man1/fill-ref-md5.1.dh-new debian/vcftools/usr/share/man/man1/fill-ref-md5.1 mv debian/vcftools/usr/share/man/man1/fill-rsIDs.1.dh-new debian/vcftools/usr/share/man/man1/fill-rsIDs.1 mv debian/vcftools/usr/share/man/man1/vcf-annotate.1.dh-new debian/vcftools/usr/share/man/man1/vcf-annotate.1 mv debian/vcftools/usr/share/man/man1/vcf-compare.1.dh-new debian/vcftools/usr/share/man/man1/vcf-compare.1 mv debian/vcftools/usr/share/man/man1/vcf-concat.1.dh-new debian/vcftools/usr/share/man/man1/vcf-concat.1 mv debian/vcftools/usr/share/man/man1/vcf-consensus.1.dh-new debian/vcftools/usr/share/man/man1/vcf-consensus.1 mv debian/vcftools/usr/share/man/man1/vcf-contrast.1.dh-new debian/vcftools/usr/share/man/man1/vcf-contrast.1 mv debian/vcftools/usr/share/man/man1/vcf-convert.1.dh-new debian/vcftools/usr/share/man/man1/vcf-convert.1 mv debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1.dh-new debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 mv debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1.dh-new debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 chmod 0644 -- debian/vcftools/usr/share/man/man1/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 dh_perl mv debian/vcftools.substvars.new debian/vcftools.substvars rmdir --ignore-fail-on-non-empty --parents debian/vcftools/usr/share/perl5 dh_link dh_strip_nondeterminism dh_compress cd debian/vcftools chmod a-x usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1 gzip -9nf usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1 cd '/<>' dh_fixperms find debian/vcftools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/vcftools/usr/share/doc -type f -a -true -a ! -regex 'debian/vcftools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/vcftools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/share/perl5 -type f -perm -5 -name '*.pm' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a-X find debian/vcftools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/vcftools/usr/bin/vcftools dh_strip -a install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/54 objcopy --only-keep-debug --compress-debug-sections debian/vcftools/usr/bin/vcftools debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/54/aef5f0638a12d8578233705618c0124866b186.debug chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/54/aef5f0638a12d8578233705618c0124866b186.debug strip --remove-section=.comment --remove-section=.note debian/vcftools/usr/bin/vcftools objcopy --add-gnu-debuglink debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/54/aef5f0638a12d8578233705618c0124866b186.debug debian/vcftools/usr/bin/vcftools install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/usr/share/doc ln -s vcftools debian/.debhelper/vcftools/dbgsym-root/usr/share/doc/vcftools-dbgsym install -m0755 -d debian/.debhelper/vcftools dh_makeshlibs -a rm -f debian/vcftools/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/vcftools/DEBIAN dpkg-shlibdeps -Tdebian/vcftools.substvars debian/vcftools/usr/bin/vcftools dh_installdeb install -m0755 -d debian/vcftools/DEBIAN dh_gencontrol install -m0755 -d debian/vcftools/DEBIAN echo misc:Depends= >> debian/vcftools.substvars echo misc:Pre-Depends= >> debian/vcftools.substvars install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/DEBIAN dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -cdebian/control -Pdebian/.debhelper/vcftools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=vcftools-dbgsym "-DDepends=vcftools (= \${binary:Version})" "-DDescription=debug symbols for vcftools" -DBuild-Ids=54aef5f0638a12d8578233705618c0124866b186 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/DEBIAN/control dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -cdebian/control -Pdebian/vcftools chmod 0644 -- debian/vcftools/DEBIAN/control dh_md5sums install -m0755 -d debian/vcftools/DEBIAN cd debian/vcftools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/vcftools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/DEBIAN cd debian/.debhelper/vcftools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/vcftools .. dpkg-deb --root-owner-group --build debian/.debhelper/vcftools/dbgsym-root .. dpkg-deb: building package 'vcftools' in '../vcftools_0.1.16-3_amd64.deb'. dpkg-deb: building package 'vcftools-dbgsym' in '../vcftools-dbgsym_0.1.16-3_amd64.deb'. dpkg-genbuildinfo -O../vcftools_0.1.16-3_amd64.buildinfo dpkg-genchanges -O../vcftools_0.1.16-3_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-09-16T22:08:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ vcftools_0.1.16-3_amd64.changes: -------------------------------- Format: 1.8 Date: Thu, 07 Oct 2021 07:36:06 +0200 Source: vcftools Binary: vcftools vcftools-dbgsym Architecture: source amd64 Version: 0.1.16-3 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: vcftools - Collection of tools to work with VCF files Changes: vcftools (0.1.16-3) unstable; urgency=medium . * Fix watchfile to detect new versions on github (routine-update) * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 27aee6acc34ac469822c8d3a1498ef05446d0d1d 1163 vcftools_0.1.16-3.dsc 2c0b49bf116f582ddeed82a6b3889244dbccd83a 13976 vcftools_0.1.16-3.debian.tar.xz 4bd6dd4d2d43493a1daf3d77c261b1baeb252321 5215548 vcftools-dbgsym_0.1.16-3_amd64.deb 99e74dfca30b77d938abdbfc4e3837a1aace71d8 5410 vcftools_0.1.16-3_amd64.buildinfo a2df1b184452e541b94a0da018634bc02b2e6da1 467200 vcftools_0.1.16-3_amd64.deb Checksums-Sha256: be1481ca7d7ff44dbb63e6b7418ff054ce8e0af0b74383b352dc50d20d63405e 1163 vcftools_0.1.16-3.dsc 8f801a7198f254af7eb2645a651f3dc210724470ab2b20e4198160b43684c15e 13976 vcftools_0.1.16-3.debian.tar.xz 42e73c783d692579066a907cda655a8ba402c29d5e1194948718cf73f33efc5f 5215548 vcftools-dbgsym_0.1.16-3_amd64.deb 7ffd82f8d40ac236f26a3f4689222da310356b5b225d0dfe7f8dfde95aabe43b 5410 vcftools_0.1.16-3_amd64.buildinfo 112fdff742888fb9ea0cb769e1d1e5d9c974fcbf9fecae2832237c8ca51f423d 467200 vcftools_0.1.16-3_amd64.deb Files: 004e9d0620ff544b81acf09a7c858981 1163 science optional vcftools_0.1.16-3.dsc 549d26d140556a6bfa7bdfded5cb4b72 13976 science optional vcftools_0.1.16-3.debian.tar.xz 03c32f4716bf95ac4416a76ff3524732 5215548 debug optional vcftools-dbgsym_0.1.16-3_amd64.deb 8d127ad533fdec4f4c92a02ae537d069 5410 science optional vcftools_0.1.16-3_amd64.buildinfo 4489b54cbdfe725cf31b6fb12ff7580d 467200 science optional vcftools_0.1.16-3_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: vcftools Binary: vcftools vcftools-dbgsym Architecture: amd64 source Version: 0.1.16-3 Checksums-Md5: 004e9d0620ff544b81acf09a7c858981 1163 vcftools_0.1.16-3.dsc 03c32f4716bf95ac4416a76ff3524732 5215548 vcftools-dbgsym_0.1.16-3_amd64.deb 4489b54cbdfe725cf31b6fb12ff7580d 467200 vcftools_0.1.16-3_amd64.deb Checksums-Sha1: 27aee6acc34ac469822c8d3a1498ef05446d0d1d 1163 vcftools_0.1.16-3.dsc 4bd6dd4d2d43493a1daf3d77c261b1baeb252321 5215548 vcftools-dbgsym_0.1.16-3_amd64.deb a2df1b184452e541b94a0da018634bc02b2e6da1 467200 vcftools_0.1.16-3_amd64.deb Checksums-Sha256: be1481ca7d7ff44dbb63e6b7418ff054ce8e0af0b74383b352dc50d20d63405e 1163 vcftools_0.1.16-3.dsc 42e73c783d692579066a907cda655a8ba402c29d5e1194948718cf73f33efc5f 5215548 vcftools-dbgsym_0.1.16-3_amd64.deb 112fdff742888fb9ea0cb769e1d1e5d9c974fcbf9fecae2832237c8ca51f423d 467200 vcftools_0.1.16-3_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 16 Sep 2024 22:08:06 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-4), binutils-common (= 2.43.1-4), binutils-x86-64-linux-gnu (= 2.43.1-4), bsdextrautils (= 2.40.2-8), bsdutils (= 1:2.40.2-8), build-essential (= 12.10), bzip2 (= 1.0.8-6), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-6), cpp-13-x86-64-linux-gnu (= 13.3.0-6), cpp-14 (= 14.2.0-5), cpp-14-x86-64-linux-gnu (= 14.2.0-5), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-5), g++-14-x86-64-linux-gnu (= 14.2.0-5), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-6), gcc-13-base (= 13.3.0-6), gcc-13-x86-64-linux-gnu (= 13.3.0-6), gcc-14 (= 14.2.0-5), gcc-14-base (= 14.2.0-5), gcc-14-x86-64-linux-gnu (= 14.2.0-5), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-5), libatomic1 (= 14.2.0-5), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-4), libblkid1 (= 2.40.2-8), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-2), libc-dev-bin (= 2.40-2), libc6 (= 2.40-2), libc6-dev (= 2.40-2), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-5), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-4), libctf0 (= 2.43.1-4), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-6), libgcc-14-dev (= 14.2.0-5), libgcc-s1 (= 14.2.0-5), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-5), libgprofng0 (= 2.43.1-4), libhwasan0 (= 14.2.0-5), libicu72 (= 72.1-5), libisl23 (= 0.27-1), libitm1 (= 14.2.0-5), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-5), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-5), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-3), libquadmath0 (= 14.2.0-5), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-4), libsmartcols1 (= 2.40.2-8), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-5), libstdc++6 (= 14.2.0-5), libsystemd0 (= 256.6-1), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-5), libubsan1 (= 14.2.0-5), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.6-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-8), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.9-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-5), perl-base (= 5.40.0-5), perl-modules-5.40 (= 5.40.0-5), pkg-config (= 1.8.1-3), pkgconf (= 1.8.1-3), pkgconf-bin (= 1.8.1-3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-8), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1633584966" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ vcftools-dbgsym_0.1.16-3_amd64.deb ---------------------------------- new Debian package, version 2.0. size 5215548 bytes: control archive=536 bytes. 377 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: vcftools-dbgsym Source: vcftools Version: 0.1.16-3 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 5213 Depends: vcftools (= 0.1.16-3) Section: debug Priority: optional Description: debug symbols for vcftools Build-Ids: 54aef5f0638a12d8578233705618c0124866b186 drwxr-xr-x root/root 0 2021-10-07 05:36 ./ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/lib/debug/.build-id/54/ -rw-r--r-- root/root 5327184 2021-10-07 05:36 ./usr/lib/debug/.build-id/54/aef5f0638a12d8578233705618c0124866b186.debug drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-07 05:36 ./usr/share/doc/vcftools-dbgsym -> vcftools vcftools_0.1.16-3_amd64.deb --------------------------- new Debian package, version 2.0. size 467200 bytes: control archive=3420 bytes. 689 bytes, 15 lines control 8619 bytes, 114 lines md5sums Package: vcftools Version: 0.1.16-3 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1797 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.6), perl:any Recommends: tabix Section: science Priority: optional Homepage: https://vcftools.github.io/ Description: Collection of tools to work with VCF files VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. drwxr-xr-x root/root 0 2021-10-07 05:36 ./ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/bin/ -rwxr-xr-x root/root 6100 2021-10-07 05:36 ./usr/bin/fill-aa -rwxr-xr-x root/root 1257 2021-10-07 05:36 ./usr/bin/fill-an-ac -rwxr-xr-x root/root 8064 2021-10-07 05:36 ./usr/bin/fill-fs -rwxr-xr-x root/root 6563 2021-10-07 05:36 ./usr/bin/fill-ref-md5 -rwxr-xr-x root/root 51249 2021-10-07 05:36 ./usr/bin/vcf-annotate -rwxr-xr-x root/root 57386 2021-10-07 05:36 ./usr/bin/vcf-compare -rwxr-xr-x root/root 10948 2021-10-07 05:36 ./usr/bin/vcf-concat -rwxr-xr-x root/root 9222 2021-10-07 05:36 ./usr/bin/vcf-consensus -rwxr-xr-x root/root 8793 2021-10-07 05:36 ./usr/bin/vcf-contrast -rwxr-xr-x root/root 6167 2021-10-07 05:36 ./usr/bin/vcf-convert -rwxr-xr-x root/root 2294 2021-10-07 05:36 ./usr/bin/vcf-fix-newlines -rwxr-xr-x root/root 10811 2021-10-07 05:36 ./usr/bin/vcf-fix-ploidy -rwxr-xr-x root/root 4372 2021-10-07 05:36 ./usr/bin/vcf-indel-stats -rwxr-xr-x root/root 21169 2021-10-07 05:36 ./usr/bin/vcf-isec -rwxr-xr-x root/root 22984 2021-10-07 05:36 ./usr/bin/vcf-merge -rwxr-xr-x root/root 23230 2021-10-07 05:36 ./usr/bin/vcf-phased-join -rwxr-xr-x root/root 15828 2021-10-07 05:36 ./usr/bin/vcf-query -rwxr-xr-x root/root 2297 2021-10-07 05:36 ./usr/bin/vcf-shuffle-cols -rwxr-xr-x root/root 3306 2021-10-07 05:36 ./usr/bin/vcf-sort -rwxr-xr-x root/root 4870 2021-10-07 05:36 ./usr/bin/vcf-stats -rwxr-xr-x root/root 7702 2021-10-07 05:36 ./usr/bin/vcf-subset -rwxr-xr-x root/root 2539 2021-10-07 05:36 ./usr/bin/vcf-to-tab -rwxr-xr-x root/root 1816 2021-10-07 05:36 ./usr/bin/vcf-tstv -rwxr-xr-x root/root 3349 2021-10-07 05:36 ./usr/bin/vcf-validator -rwxr-xr-x root/root 1038592 2021-10-07 05:36 ./usr/bin/vcftools drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/doc/vcftools/ -rw-r--r-- root/root 261 2021-10-07 05:36 ./usr/share/doc/vcftools/README.test -rw-r--r-- root/root 727 2021-10-07 05:36 ./usr/share/doc/vcftools/changelog.Debian.gz -rw-r--r-- root/root 1961 2018-08-03 13:56 ./usr/share/doc/vcftools/changelog.gz -rw-r--r-- root/root 1155 2021-10-07 05:36 ./usr/share/doc/vcftools/copyright drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/ -rw-r--r-- root/root 1685 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/annotate-test.vcf -rw-r--r-- root/root 1376 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/annotate.out -rw-r--r-- root/root 299 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/annotate.txt -rw-r--r-- root/root 3107 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/annotate2.out -rw-r--r-- root/root 1394 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/annotate3.out -rw-r--r-- root/root 522 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/cmp-test-a-3.3.vcf -rw-r--r-- root/root 638 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/cmp-test-a.vcf -rw-r--r-- root/root 520 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/cmp-test-b-3.3.vcf -rw-r--r-- root/root 636 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/cmp-test-b.vcf -rw-r--r-- root/root 2633 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/cmp-test.out -rw-r--r-- root/root 1180 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/concat-a.vcf -rw-r--r-- root/root 674 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/concat-b.vcf -rw-r--r-- root/root 972 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/concat-c.vcf -rw-r--r-- root/root 2074 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/concat.out -rw-r--r-- root/root 1038 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/consensus.fa -rw-r--r-- root/root 1037 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/consensus.out -rw-r--r-- root/root 1037 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/consensus.out2 -rw-r--r-- root/root 275 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/consensus.vcf -rw-r--r-- root/root 6951 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/contrast.out -rw-r--r-- root/root 28065 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/contrast.vcf -rw-r--r-- root/root 1524 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/fill-an-ac.out -rw-r--r-- root/root 4901 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/filters.txt -rw-r--r-- root/root 1924 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.out -rw-r--r-- root/root 42 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.samples -rw-r--r-- root/root 223 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.txt -rw-r--r-- root/root 9005 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.vcf -rw-r--r-- root/root 564 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/floats.vcf -rw-r--r-- root/root 48 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/indel-stats.out -rw-r--r-- root/root 24 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/indel-stats.tab -rw-r--r-- root/root 523 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/indel-stats.vcf -rw-r--r-- root/root 2086 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/invalid-4.0.vcf -rw-r--r-- root/root 1120 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/isec-n2-test.vcf.out -rw-r--r-- root/root 965 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/merge-test-a.vcf -rw-r--r-- root/root 1020 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/merge-test-b.vcf -rw-r--r-- root/root 798 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/merge-test-c.vcf -rw-r--r-- root/root 2240 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/merge-test.vcf.out -rw-r--r-- root/root 230 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/parse-test.vcf -rw-r--r-- root/root 1435 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/perl-api-1.pl -rw-r--r-- root/root 255 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/query-test.out -rw-r--r-- root/root 638 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/shuffle-test.vcf -rw-r--r-- root/root 522 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/subset.SNPs.out -rw-r--r-- root/root 931 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/subset.indels.out -rw-r--r-- root/root 1229 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/subset.vcf -rw-r--r-- root/root 1612 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/valid-3.3.vcf -rw-r--r-- root/root 2182 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf -rw-r--r-- root/root 5161 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf.stats -rw-r--r-- root/root 2999 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testdata/valid-4.1.vcf drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testsuite/ -rw-r--r-- root/root 6724 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testsuite/FaSlice.pm -rw-r--r-- root/root 107597 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testsuite/Vcf.pm -rw-r--r-- root/root 18147 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testsuite/VcfStats.pm -rwxr-xr-x root/root 6100 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testsuite/fill-aa -rwxr-xr-x root/root 1257 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testsuite/fill-an-ac -rwxr-xr-x root/root 8064 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testsuite/fill-fs -rwxr-xr-x root/root 6563 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testsuite/fill-ref-md5 -rw-r--r-- root/root 18274 2021-10-07 05:36 ./usr/share/doc/vcftools/examples/testsuite/test.t -rw-r--r-- root/root 381 2021-10-07 05:36 ./usr/share/doc/vcftools/run-unit-test drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/man/man1/ -rw-r--r-- root/root 272 2021-10-07 05:36 ./usr/share/man/man1/fill-aa.1.gz -rw-r--r-- root/root 241 2021-10-07 05:36 ./usr/share/man/man1/fill-an-ac.1.gz -rw-r--r-- root/root 664 2021-10-07 05:36 ./usr/share/man/man1/fill-fs.1.gz -rw-r--r-- root/root 654 2021-10-07 05:36 ./usr/share/man/man1/fill-ref-md5.1.gz -rw-r--r-- root/root 280 2021-10-07 05:36 ./usr/share/man/man1/fill-rsIDs.1.gz -rw-r--r-- root/root 1281 2021-10-07 05:36 ./usr/share/man/man1/vcf-annotate.1.gz -rw-r--r-- root/root 852 2021-10-07 05:36 ./usr/share/man/man1/vcf-compare.1.gz -rw-r--r-- root/root 518 2021-10-07 05:36 ./usr/share/man/man1/vcf-concat.1.gz -rw-r--r-- root/root 277 2021-10-07 05:36 ./usr/share/man/man1/vcf-consensus.1.gz -rw-r--r-- root/root 724 2021-10-07 05:36 ./usr/share/man/man1/vcf-contrast.1.gz -rw-r--r-- root/root 389 2021-10-07 05:36 ./usr/share/man/man1/vcf-convert.1.gz -rw-r--r-- root/root 429 2021-10-07 05:36 ./usr/share/man/man1/vcf-fix-newlines.1.gz -rw-r--r-- root/root 651 2021-10-07 05:36 ./usr/share/man/man1/vcf-fix-ploidy.1.gz -rw-r--r-- root/root 366 2021-10-07 05:36 ./usr/share/man/man1/vcf-indel-stats.1.gz -rw-r--r-- root/root 956 2021-10-07 05:36 ./usr/share/man/man1/vcf-isec.1.gz -rw-r--r-- root/root 599 2021-10-07 05:36 ./usr/share/man/man1/vcf-merge.1.gz -rw-r--r-- root/root 551 2021-10-07 05:36 ./usr/share/man/man1/vcf-phased-join.1.gz -rw-r--r-- root/root 500 2021-10-07 05:36 ./usr/share/man/man1/vcf-query.1.gz -rw-r--r-- root/root 343 2021-10-07 05:36 ./usr/share/man/man1/vcf-shuffle-cols.1.gz -rw-r--r-- root/root 254 2021-10-07 05:36 ./usr/share/man/man1/vcf-sort.1.gz -rw-r--r-- root/root 685 2021-10-07 05:36 ./usr/share/man/man1/vcf-stats.1.gz -rw-r--r-- root/root 558 2021-10-07 05:36 ./usr/share/man/man1/vcf-subset.1.gz -rw-r--r-- root/root 280 2021-10-07 05:36 ./usr/share/man/man1/vcf-to-tab.1.gz -rw-r--r-- root/root 227 2021-10-07 05:36 ./usr/share/man/man1/vcf-tstv.1.gz -rw-r--r-- root/root 307 2021-10-07 05:36 ./usr/share/man/man1/vcf-validator.1.gz -rw-r--r-- root/root 8615 2021-10-07 05:36 ./usr/share/man/man1/vcftools.1.gz drwxr-xr-x root/root 0 2021-10-07 05:36 ./usr/share/perl5/ -rw-r--r-- root/root 6724 2021-10-07 05:36 ./usr/share/perl5/FaSlice.pm -rw-r--r-- root/root 107597 2021-10-07 05:36 ./usr/share/perl5/Vcf.pm -rw-r--r-- root/root 18147 2021-10-07 05:36 ./usr/share/perl5/VcfStats.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 76668 Build-Time: 54 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 5 Job: /srv/debomatic/incoming/vcftools_0.1.16-3.dsc Machine Architecture: amd64 Package: vcftools Package-Time: 69 Source-Version: 0.1.16-3 Space: 76668 Status: successful Version: 0.1.16-3 -------------------------------------------------------------------------------- Finished at 2024-09-16T22:08:06Z Build needed 00:01:09, 76668k disk space