sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | sprai 0.9.9.23+dfsg1-2 (amd64) Mon, 05 Aug 2024 02:03:03 +0000 | +==============================================================================+ Package: sprai Version: 0.9.9.23+dfsg1-2 Source Version: 0.9.9.23+dfsg1-2 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-1ebd5afa-49b4-4590-ad85-564579b03ec5' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup sprai_0.9.9.23+dfsg1-2 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup sprai_0.9.9.23+dfsg1-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/sprai-jzFXAN/resolver-i3Rm7j' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/sprai_0.9.9.23+dfsg1-2.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/sprai-jzFXAN/sprai-0.9.9.23+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/sprai-jzFXAN' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [617 B] Get:5 copy:/<>/apt_archive ./ Packages [649 B] Fetched 1875 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After this operation, 75.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [880 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-1 [96.1 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.7 MB in 0s (148 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22966 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../31-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.16) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.4 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-1 bsdutils_1:2.40.2-1 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-4 g++-13-x86-64-linux-gnu_13.3.0-4 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-4 gcc-13-base_13.3.0-4 gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libblkid1_2.40.2-1 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.2.0-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-4 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.42.90.20240720-2 libhogweed6t64_3.10-1 libhwasan0_14.2.0-1 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2+b1 liblsan0_14.2.0-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-1 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-1 libpipeline1_1.5.7-2 libquadmath0_14.2.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b3 libsemanage-common_3.5-1 libsemanage2_3.5-1+b4 libsepol2_3.5-2+b1 libsframe1_2.42.90.20240720-2 libsmartcols1_2.40.2-1 libsqlite3-0_3.46.0-1 libssl3t64_3.3.1-2 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 libsystemd0_256.4-2 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-1 libubsan1_14.2.0-1 libuchardet0_0.0.8-1+b1 libudev1_256.4-2 libunistring5_1.2-1 libuuid1_2.40.2-1 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.9.12-1 locales-all_2.39-6 login_1:4.15.3-3 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.15.3-3 patch_2.7.6-7 perl_5.40.0-1 perl-base_5.40.0-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-1 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-1 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: sprai Binary: sprai Architecture: any Version: 0.9.9.23+dfsg1-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://web.archive.org/web/20180316202959/http://zombie.cb.k.u-tokyo.ac.jp/sprai/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/sprai Vcs-Git: https://salsa.debian.org/med-team/sprai.git Build-Depends: debhelper-compat (= 12) Package-List: sprai deb science optional arch=any Checksums-Sha1: 4c0617d846c40ce0c8e75238e85cd8268dae100f 60428 sprai_0.9.9.23+dfsg1.orig.tar.xz 5706a8ee1f8c6d1ac32220e5b0dd4e138311cd73 1446536 sprai_0.9.9.23+dfsg1-2.debian.tar.xz Checksums-Sha256: b7190784e07c803e465a07b4b3a0ba086b8c82c93878c4e252e8c715d20d22c2 60428 sprai_0.9.9.23+dfsg1.orig.tar.xz a8e0ced7a51f5d8b96cf05f41a80a62d8dcba10ab2807f4a15ae0a3fbea4a1fb 1446536 sprai_0.9.9.23+dfsg1-2.debian.tar.xz Files: 91389cbe7e99874c959933859e76d7bb 60428 sprai_0.9.9.23+dfsg1.orig.tar.xz 23dd12d505b4c89ab7a0998250389728 1446536 sprai_0.9.9.23+dfsg1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6ZShYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGbAw//RZFY0CoUx6pbaN6mm3Iel/1Na6uaUKMM Es856A08VGQWZmYMNXcpSQGCfBjlQwCsEs4FmgPfMiOqEmkj2t61B5Pe9pPJ/W9N uIRkERkeg69LUZNBDIm94/q5T7YEtKUWZbpH/CyxttMpwPwxeo3qwvHTJ9A5BUmL 0JXIaXw8oUxEwAllHeyyGWseKrnAb5GZ7HcyJiY4qqIwp7kY4sQF8dAWQECBxEFS 4JZ+S8bgab0eDwGdENRulADJjI5ta8eCacWFqn8jo0+3NWOqnbGtgR6gCsa7W7qc uMe7wShtGPaY8Jor1UcaPIo2l5gGfFeLnKqfFmkx9lMhr/4EGeEZZukRdjLbcftM Q4Eesg3lFfcJjDeyhjg3EZzPxL5L9YMioHp6khF+yUNbHwnthxTO1cRnmBqoP3eW Bqwrmry5VMSTZ67TFz6ILlFt5jUe8D69QAAFEWyZsNJloXRBWhRPUZFAqFmU04T/ 9s9jl4AY1ybqvHhvvgtVSusPK7oo5L2XmPL9zVEW8U/JA+NTqlChDshXViSxkmIc 1J5JayshioAkW13aQVPOAqMniO3z2Vwf0webawAnDltxbTuHg1bNH+qKRtyh2GDB hK2fV5kHXTctTT2whLQYNqcMWCEN/zPaqRa67SHy/LYXoTv4fQds8cI2HEETv9k/ yrX3cH/WeZY= =sKA0 -----END PGP SIGNATURE----- gpgv: Signature made Fri Apr 17 06:17:58 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sprai_0.9.9.23+dfsg1-2.dsc: no acceptable signature found dpkg-source: info: extracting sprai in /<> dpkg-source: info: unpacking sprai_0.9.9.23+dfsg1.orig.tar.xz dpkg-source: info: unpacking sprai_0.9.9.23+dfsg1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying libexec.patch dpkg-source: info: applying example-specs.patch dpkg-source: info: applying makefile.patch dpkg-source: info: applying no-pwd.patch dpkg-source: info: applying cflags.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network sprai_0.9.9.23+dfsg1-2 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network sprai_0.9.9.23+dfsg1-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-1ebd5afa-49b4-4590-ad85-564579b03ec5 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package sprai dpkg-buildpackage: info: source version 0.9.9.23+dfsg1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=makefile dh_auto_clean -O--buildsystem=makefile dh_autoreconf_clean -O--buildsystem=makefile dh_clean -O--buildsystem=makefile dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building sprai using existing ./sprai_0.9.9.23+dfsg1.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building sprai in sprai_0.9.9.23+dfsg1-2.debian.tar.xz dpkg-source: info: building sprai in sprai_0.9.9.23+dfsg1-2.dsc debian/rules binary dh binary --buildsystem=makefile dh_update_autotools_config -O--buildsystem=makefile dh_autoreconf -O--buildsystem=makefile dh_auto_configure -O--buildsystem=makefile dh_auto_build -O--buildsystem=makefile make -j2 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' cc -Wall -O3 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o bfmt72s bfmt72s.c cc -Wall -O3 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o nss2v_v3 nss2v_v3.c cc -Wall -O3 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o myrealigner myrealigner.c myrealigner.c: In function ‘main’: myrealigner.c:1313:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1313 | for(i = 1; i < 5; ++i) | ^~~ myrealigner.c:1316:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1316 | score += (col->colDepth-max); | ^~~~~ cc -Wall -O3 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o m52bfmt7 m52bfmt7.c make[1]: Leaving directory '/<>' dh_auto_test -O--buildsystem=makefile create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=makefile dh_prep -O--buildsystem=makefile dh_auto_install --destdir=debian/sprai/ -O--buildsystem=makefile make -j2 install DESTDIR=/<>/sprai-0.9.9.23\+dfsg1/debian/sprai AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' chmod 766 bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl mkdir -vp /<>/debian/sprai/usr/bin/ mkdir: created directory '/<>/debian/sprai/usr' mkdir: created directory '/<>/debian/sprai/usr/bin/' cp -p bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl /<>/debian/sprai/usr/bin/ make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' mkdir -p /<>/debian/sprai/usr/lib/sprai cd /<>/debian/sprai/usr/bin \ && mv * ../lib/sprai/ \ && mv ../lib/sprai/ezez* . cd /<>/debian/sprai/usr/bin \ && \ for script in *; \ do \ mv $script $(basename $script .pl) \ && ln -sf $(basename $script .pl) $script; \ done dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -O--buildsystem=makefile debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs doc/_build/html/_sources/index.txt make[1]: Leaving directory '/<>' dh_installexamples -O--buildsystem=makefile debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman --language=C make[1]: Leaving directory '/<>' dh_installinit -O--buildsystem=makefile dh_installsystemduser -O--buildsystem=makefile dh_perl -O--buildsystem=makefile dh_link -O--buildsystem=makefile dh_strip_nondeterminism -O--buildsystem=makefile dh_compress -O--buildsystem=makefile dh_fixperms -O--buildsystem=makefile dh_missing -O--buildsystem=makefile dh_dwz -O--buildsystem=makefile dh_strip -O--buildsystem=makefile dh_makeshlibs -O--buildsystem=makefile dh_shlibdeps -O--buildsystem=makefile dh_installdeb -O--buildsystem=makefile dh_gencontrol -O--buildsystem=makefile dh_md5sums -O--buildsystem=makefile dh_builddeb -O--buildsystem=makefile dpkg-deb: building package 'sprai-dbgsym' in '../sprai-dbgsym_0.9.9.23+dfsg1-2_amd64.deb'. dpkg-deb: building package 'sprai' in '../sprai_0.9.9.23+dfsg1-2_amd64.deb'. dpkg-genbuildinfo -O../sprai_0.9.9.23+dfsg1-2_amd64.buildinfo dpkg-genchanges -O../sprai_0.9.9.23+dfsg1-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-05T02:03:26Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ sprai_0.9.9.23+dfsg1-2_amd64.changes: ------------------------------------- Format: 1.8 Date: Fri, 17 Apr 2020 07:11:31 +0200 Source: sprai Binary: sprai sprai-dbgsym Architecture: source amd64 Version: 0.9.9.23+dfsg1-2 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Helmut Grohne Description: sprai - single-pass sequencing read accuracy improver Closes: 956946 Changes: sprai (0.9.9.23+dfsg1-2) unstable; urgency=medium . * Team upload. * Fix FTCBFS: use the makefile buildsystem. (Closes: #956946) Checksums-Sha1: e955487a1a07838a14868c3bbe38db2e2d8ece42 1112 sprai_0.9.9.23+dfsg1-2.dsc cb51ca54bddc03532a56e03339c00808c6b70143 1446544 sprai_0.9.9.23+dfsg1-2.debian.tar.xz e7c6bac1faf12a30b3cb1012d58523858d147747 63380 sprai-dbgsym_0.9.9.23+dfsg1-2_amd64.deb d7420da42a985d645fda2b0fa55de7d048781c24 5369 sprai_0.9.9.23+dfsg1-2_amd64.buildinfo f7fac1ea2a58df20a0a9aa7e0a2a77f9a0ea20d7 1512344 sprai_0.9.9.23+dfsg1-2_amd64.deb Checksums-Sha256: 83d4d669cee8b07fc010be624d8a6438bf95ae5bfceaaebb7075e51359eb0de7 1112 sprai_0.9.9.23+dfsg1-2.dsc 319a50ce737281635c692966df6b76bdb6c39c096b91ab1aa34fb4476e2ae45a 1446544 sprai_0.9.9.23+dfsg1-2.debian.tar.xz b5ceacaa8a07a15bc5e7ca8a5063652ac47e6906a596e36bae0f9d18afd900ef 63380 sprai-dbgsym_0.9.9.23+dfsg1-2_amd64.deb 0a9c0d9c8967e07c9e03e1bac1a1bf7efc10104243d0811ad49b88522c9473de 5369 sprai_0.9.9.23+dfsg1-2_amd64.buildinfo e7347adb0c1abcd4d30c243a16d83cfb885c12f9f23a5a6d07de406094939512 1512344 sprai_0.9.9.23+dfsg1-2_amd64.deb Files: 47c6a8d511d02980d7ccbbef2fca2193 1112 science optional sprai_0.9.9.23+dfsg1-2.dsc 6839c4311014c3cb8d6c5966749f2055 1446544 science optional sprai_0.9.9.23+dfsg1-2.debian.tar.xz e4662e223dc679ee6da36a56c00c9651 63380 debug optional sprai-dbgsym_0.9.9.23+dfsg1-2_amd64.deb c61a53bdf16eb9165d2c58aeb4e6ffe7 5369 science optional sprai_0.9.9.23+dfsg1-2_amd64.buildinfo d8c98dd3a8211916fadea9c73dfc32b8 1512344 science optional sprai_0.9.9.23+dfsg1-2_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: sprai Binary: sprai sprai-dbgsym Architecture: amd64 source Version: 0.9.9.23+dfsg1-2 Checksums-Md5: 47c6a8d511d02980d7ccbbef2fca2193 1112 sprai_0.9.9.23+dfsg1-2.dsc e4662e223dc679ee6da36a56c00c9651 63380 sprai-dbgsym_0.9.9.23+dfsg1-2_amd64.deb d8c98dd3a8211916fadea9c73dfc32b8 1512344 sprai_0.9.9.23+dfsg1-2_amd64.deb Checksums-Sha1: e955487a1a07838a14868c3bbe38db2e2d8ece42 1112 sprai_0.9.9.23+dfsg1-2.dsc e7c6bac1faf12a30b3cb1012d58523858d147747 63380 sprai-dbgsym_0.9.9.23+dfsg1-2_amd64.deb f7fac1ea2a58df20a0a9aa7e0a2a77f9a0ea20d7 1512344 sprai_0.9.9.23+dfsg1-2_amd64.deb Checksums-Sha256: 83d4d669cee8b07fc010be624d8a6438bf95ae5bfceaaebb7075e51359eb0de7 1112 sprai_0.9.9.23+dfsg1-2.dsc b5ceacaa8a07a15bc5e7ca8a5063652ac47e6906a596e36bae0f9d18afd900ef 63380 sprai-dbgsym_0.9.9.23+dfsg1-2_amd64.deb e7347adb0c1abcd4d30c243a16d83cfb885c12f9f23a5a6d07de406094939512 1512344 sprai_0.9.9.23+dfsg1-2_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 05 Aug 2024 02:03:26 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.4), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), binutils-x86-64-linux-gnu (= 2.42.90.20240720-2), bsdextrautils (= 2.40.2-1), bsdutils (= 1:2.40.2-1), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-4), cpp-13-x86-64-linux-gnu (= 13.3.0-4), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-4), gcc-13-base (= 13.3.0-4), gcc-13-x86-64-linux-gnu (= 13.3.0-4), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.42.90.20240720-2), libblkid1 (= 2.40.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.42.90.20240720-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-1), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.2.0-1), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsmartcols1 (= 2.40.2-1), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsystemd0 (= 256.4-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-1), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), patch (= 2.7.6-7), perl (= 5.40.0-1), perl-base (= 5.40.0-1), perl-modules-5.40 (= 5.40.0-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-1), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1587100291" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ sprai-dbgsym_0.9.9.23+dfsg1-2_amd64.deb --------------------------------------- new Debian package, version 2.0. size 63380 bytes: control archive=740 bytes. 503 bytes, 12 lines control 506 bytes, 5 lines md5sums Package: sprai-dbgsym Source: sprai Version: 0.9.9.23+dfsg1-2 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 103 Depends: sprai (= 0.9.9.23+dfsg1-2) Section: debug Priority: optional Description: debug symbols for sprai Build-Ids: 7d0562e6ff5e4ae0ce86d275f13b8421f19d65aa bbfbbe6a389115fe837809e8ae4f7005f14556bb bc73cc25ffc6437f10d168ddf3fd030057dd7c86 e6c21a0247dc8af87b684419edf80565daf62f6b drwxr-xr-x root/root 0 2020-04-17 05:11 ./ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/debug/.build-id/7d/ -rw-r--r-- root/root 8912 2020-04-17 05:11 ./usr/lib/debug/.build-id/7d/0562e6ff5e4ae0ce86d275f13b8421f19d65aa.debug drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/debug/.build-id/bb/ -rw-r--r-- root/root 27928 2020-04-17 05:11 ./usr/lib/debug/.build-id/bb/fbbe6a389115fe837809e8ae4f7005f14556bb.debug drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/debug/.build-id/bc/ -rw-r--r-- root/root 18360 2020-04-17 05:11 ./usr/lib/debug/.build-id/bc/73cc25ffc6437f10d168ddf3fd030057dd7c86.debug drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/debug/.build-id/e6/ -rw-r--r-- root/root 30216 2020-04-17 05:11 ./usr/lib/debug/.build-id/e6/c21a0247dc8af87b684419edf80565daf62f6b.debug drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 2584 2020-04-17 05:11 ./usr/lib/debug/.dwz/x86_64-linux-gnu/sprai.debug drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/share/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-04-17 05:11 ./usr/share/doc/sprai-dbgsym -> sprai sprai_0.9.9.23+dfsg1-2_amd64.deb -------------------------------- new Debian package, version 2.0. size 1512344 bytes: control archive=1840 bytes. 932 bytes, 18 lines control 2569 bytes, 39 lines md5sums Package: sprai Version: 0.9.9.23+dfsg1-2 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1709 Depends: libc6 (>= 2.34), perl:any, ncbi-blast+, time Suggests: pbh5tools, pbgenomicconsensus, pbalign, make Section: science Priority: optional Homepage: https://web.archive.org/web/20180316202959/http://zombie.cb.k.u-tokyo.ac.jp/sprai/ Description: single-pass sequencing read accuracy improver Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction. drwxr-xr-x root/root 0 2020-04-17 05:11 ./ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/bin/ -rwxr-xr-x root/root 30466 2020-04-17 05:11 ./usr/bin/ezez4makefile_v4 lrwxrwxrwx root/root 0 2020-04-17 05:11 ./usr/bin/ezez4makefile_v4.pl -> ezez4makefile_v4 -rwxr-xr-x root/root 44130 2020-04-17 05:11 ./usr/bin/ezez4qsub_vx1 lrwxrwxrwx root/root 0 2020-04-17 05:11 ./usr/bin/ezez4qsub_vx1.pl -> ezez4qsub_vx1 -rwxr-xr-x root/root 20445 2020-04-17 05:11 ./usr/bin/ezez_vx1 lrwxrwxrwx root/root 0 2020-04-17 05:11 ./usr/bin/ezez_vx1.pl -> ezez_vx1 drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/lib/sprai/ -rwxr-xr-x root/root 23040 2020-04-17 05:11 ./usr/lib/sprai/bfmt72s -rwxr-xr-x root/root 1819 2013-07-01 03:19 ./usr/lib/sprai/bfmtx2m4.pl -rwxr-xr-x root/root 5690 2016-04-15 03:55 ./usr/lib/sprai/ca_ikki_v5.pl -rwxr-xr-x root/root 6754 2020-04-17 05:11 ./usr/lib/sprai/check_circularity.pl -rwxr-xr-x root/root 2256 2020-04-17 05:11 ./usr/lib/sprai/check_redundancy.pl -rwxr-xr-x root/root 7288 2014-08-30 05:46 ./usr/lib/sprai/dfq2fq_v2.pl -rwxr-xr-x root/root 3172 2017-02-13 01:11 ./usr/lib/sprai/dumbbell_filter.pl -rwxr-xr-x root/root 3089 2013-07-01 03:19 ./usr/lib/sprai/extract_fq.pl -rwxr-xr-x root/root 3787 2014-08-30 05:46 ./usr/lib/sprai/fa2fq.pl -rwxr-xr-x root/root 946 2013-05-17 06:31 ./usr/lib/sprai/fq2fa.pl -rwxr-xr-x root/root 3115 2014-08-30 05:46 ./usr/lib/sprai/fq2idfq.pl -rwxr-xr-x root/root 911 2014-08-30 05:46 ./usr/lib/sprai/fqfilt.pl -rwxr-xr-x root/root 1946 2013-07-01 03:19 ./usr/lib/sprai/get_target_fasta_records.pl -rwxr-xr-x root/root 8353 2014-08-30 05:46 ./usr/lib/sprai/get_top_20x_fa.pl -rwxr-xr-x root/root 14760 2020-04-17 05:11 ./usr/lib/sprai/m52bfmt7 -rwxr-xr-x root/root 31256 2020-04-17 05:11 ./usr/lib/sprai/myrealigner -rwxr-xr-x root/root 27152 2020-04-17 05:11 ./usr/lib/sprai/nss2v_v3 -rwxr-xr-x root/root 3187 2014-08-30 05:46 ./usr/lib/sprai/partition_fa.pl drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/share/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/share/doc/sprai/ -rw-r--r-- root/root 343 2017-01-14 02:55 ./usr/share/doc/sprai/Contact.txt -rw-r--r-- root/root 3214 2013-11-19 03:37 ./usr/share/doc/sprai/FAQ.txt -rw-r--r-- root/root 433 2020-04-17 05:11 ./usr/share/doc/sprai/README.Debian -rw-r--r-- root/root 8239 2016-06-22 09:21 ./usr/share/doc/sprai/README.txt.gz -rw-r--r-- root/root 830 2020-04-17 05:11 ./usr/share/doc/sprai/changelog.Debian.gz -rw-r--r-- root/root 1517 2017-01-14 02:55 ./usr/share/doc/sprai/changelog.gz -rw-r--r-- root/root 3587 2020-04-17 05:11 ./usr/share/doc/sprai/copyright drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/share/doc/sprai/examples/ -rw-r--r-- root/root 4761 2016-04-15 04:01 ./usr/share/doc/sprai/examples/Example.txt -rw-r--r-- root/root 2197 2020-04-17 05:11 ./usr/share/doc/sprai/examples/ec.spec -rw-r--r-- root/root 1438028 2020-04-17 05:11 ./usr/share/doc/sprai/examples/pacbio.filtered_subreads.fasta.gz -rw-r--r-- root/root 2696 2014-08-30 05:46 ./usr/share/doc/sprai/examples/pbasm.spec drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/share/man/ drwxr-xr-x root/root 0 2020-04-17 05:11 ./usr/share/man/man1/ -rw-r--r-- root/root 755 2020-04-17 05:11 ./usr/share/man/man1/ezez4makefile_v4.1.gz -rw-r--r-- root/root 755 2020-04-17 05:11 ./usr/share/man/man1/ezez4makefile_v4.pl.1.gz -rw-r--r-- root/root 755 2020-04-17 05:11 ./usr/share/man/man1/ezez4qsub_vx1.1.gz -rw-r--r-- root/root 755 2020-04-17 05:11 ./usr/share/man/man1/ezez4qsub_vx1.pl.1.gz -rw-r--r-- root/root 755 2020-04-17 05:11 ./usr/share/man/man1/ezez_vx1.1.gz -rw-r--r-- root/root 755 2020-04-17 05:11 ./usr/share/man/man1/ezez_vx1.pl.1.gz -rw-r--r-- root/root 755 2020-04-17 05:11 ./usr/share/man/man1/sprai.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 7296 Build-Time: 10 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 5 Job: /srv/debomatic/incoming/sprai_0.9.9.23+dfsg1-2.dsc Machine Architecture: amd64 Package: sprai Package-Time: 23 Source-Version: 0.9.9.23+dfsg1-2 Space: 7296 Status: successful Version: 0.9.9.23+dfsg1-2 -------------------------------------------------------------------------------- Finished at 2024-08-05T02:03:26Z Build needed 00:00:23, 7296k disk space