sbuild (Debian sbuild) 0.88.2 (16 January 2025) on carme.larted.org.uk +==============================================================================+ | seer 1.1.4-8 (amd64) Wed, 22 Jan 2025 13:20:33 +0000 | +==============================================================================+ Package: seer Version: 1.1.4-8 Source Version: 1.1.4-8 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Wed, 22 Jan 2025 13:20:33 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup seer_1.1.4-8 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup seer_1.1.4-8 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Wed, 22 Jan 2025 13:20:34 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3030 B] Get:2 http://localhost:3142/debian sid InRelease [205 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3030 B] Get:3 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:4 file:/srv/reprepro perl-5.40/main amd64 Packages [8875 B] Get:5 http://localhost:3142/debian sid/main Sources T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [147 kB] Get:5 http://localhost:3142/debian sid/main Sources T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [147 kB] Get:6 http://deb.debian.org/debian unstable InRelease [205 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [144 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [144 kB] Fetched 829 kB in 6s (145 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0t64 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2494 kB of archives. After this operation, 4096 B disk space will be freed. Get:1 http://deb.debian.org/debian unstable/main amd64 libapt-pkg6.0t64 amd64 2.9.24 [1114 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 apt amd64 2.9.24 [1380 kB] Fetched 2494 kB in 0s (117 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23043 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.24_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.24) over (2.9.23) ... Setting up libapt-pkg6.0t64:amd64 (2.9.24) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23043 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.24_amd64.deb ... Unpacking apt (2.9.24) over (2.9.23) ... Setting up apt (2.9.24) ... Processing triggers for libc-bin (2.40-5) ... +------------------------------------------------------------------------------+ | Fetch source files Wed, 22 Jan 2025 13:20:42 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/seer_1.1.4-8.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 22 Jan 2025 13:20:42 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/seer-PEPgK9/resolver-xLqLqs/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/seer-PEPgK9/resolver-xLqLqs/apt_archive ./ InRelease Get:2 copy:/build/seer-PEPgK9/resolver-xLqLqs/apt_archive ./ Release [609 B] Ign:3 copy:/build/seer-PEPgK9/resolver-xLqLqs/apt_archive ./ Release.gpg Get:4 copy:/build/seer-PEPgK9/resolver-xLqLqs/apt_archive ./ Sources [705 B] Get:5 copy:/build/seer-PEPgK9/resolver-xLqLqs/apt_archive ./ Packages [744 B] Fetched 2058 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils comerr-dev debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian krb5-multidev libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo14 libarpack2-dev libarpack2t64 libblas-dev libblas3 libboost-dev libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost1.83-dev libbrotli-dev libbrotli1 libcom-err2 libcurl4-openssl-dev libcurl4t64 libdebhelper-perl libdlib-data libdlib-dev libdlib19.2 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 libelf1t64 libevent-2.1-7t64 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgbm1 libgfortran5 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgssapi-krb5-2 libgssrpc4t64 libgzstream-dev libgzstream0 libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwloc15 libicu72 libidn2-dev libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3 libldap-dev libllvm19 libmagic-mgc libmagic1t64 libnghttp2-14 libnghttp2-dev libopencv-core-dev libopencv-core406t64 libp11-kit-dev libpciaccess0 libpipeline1 libpkgconf3 libpng-dev libpng16-16t64 libpsl-dev libpsl5t64 libpython3-dev libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib librtmp-dev librtmp1 libsensors-config libsensors5 libsqlite3-dev libssh2-1-dev libssh2-1t64 libssl-dev libsuperlu-dev libsuperlu7 libsz2 libtasn1-6-dev libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtool libuchardet0 libunbound8 libvulkan1 libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext6 libxml2 libxshmfence1 libxxf86vm1 libz3-4 libzstd-dev m4 man-db media-types mesa-libgallium netbase nettle-dev pkgconf pkgconf-bin po-debconf pybind11-dev sensible-utils tzdata x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc doc-base dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc libitpp-dev liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc libidn-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc krb5-user libhdf5-doc libhwloc-contrib-plugins libnghttp2-doc p11-kit-doc pciutils lm-sensors sqlite3-doc libssl-doc libsuperlu-doc libtbb-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libxcb-doc m4-doc apparmor less www-browser libmail-box-perl pybind11-doc Recommended packages: curl | wget | lynx ca-certificates libarchive-cpio-perl libhwloc-plugins krb5-locales libpng-tools publicsuffix libtasn1-doc libltdl-dev mesa-vulkan-drivers | vulkan-icd libmail-sendmail-perl libeigen3-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils comerr-dev debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian krb5-multidev libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo14 libarpack2-dev libarpack2t64 libblas-dev libblas3 libboost-dev libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost1.83-dev libbrotli-dev libbrotli1 libcom-err2 libcurl4-openssl-dev libcurl4t64 libdebhelper-perl libdlib-data libdlib-dev libdlib19.2 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 libelf1t64 libevent-2.1-7t64 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgbm1 libgfortran5 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgssapi-krb5-2 libgssrpc4t64 libgzstream-dev libgzstream0 libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwloc15 libicu72 libidn2-dev libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack-dev liblapack3 libldap-dev libllvm19 libmagic-mgc libmagic1t64 libnghttp2-14 libnghttp2-dev libopencv-core-dev libopencv-core406t64 libp11-kit-dev libpciaccess0 libpipeline1 libpkgconf3 libpng-dev libpng16-16t64 libpsl-dev libpsl5t64 libpython3-dev libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib librtmp-dev librtmp1 libsensors-config libsensors5 libsqlite3-dev libssh2-1-dev libssh2-1t64 libssl-dev libsuperlu-dev libsuperlu7 libsz2 libtasn1-6-dev libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtool libuchardet0 libunbound8 libvulkan1 libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext6 libxml2 libxshmfence1 libxxf86vm1 libz3-4 libzstd-dev m4 man-db media-types mesa-libgallium netbase nettle-dev pkgconf pkgconf-bin po-debconf pybind11-dev sbuild-build-depends-main-dummy sensible-utils tzdata x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 172 newly installed, 0 to remove and 0 not upgraded. Need to get 195 MB of archives. After this operation, 777 MB of additional disk space will be used. Get:1 copy:/build/seer-PEPgK9/resolver-xLqLqs/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [900 B] Get:2 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-1 [259 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-2 [539 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get:28 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:40 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:49 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-14 [837 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-4 [104 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libarmadillo14 amd64 1:14.2.1+dfsg-1+b1 [102 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libarpack2-dev amd64 3.9.1-4 [120 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.1-1+b1 [352 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.9+dfsg-1 [307 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.4.0-2 [2790 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.11.1-1+b1 [463 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [174 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [21.9 kB] Get:101 http://deb.debian.org/debian unstable/main amd64 libarmadillo-dev amd64 1:14.2.1+dfsg-1+b1 [414 kB] Get:102 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4 [10.6 MB] Get:103 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:104 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4 [347 kB] Get:105 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4 [375 kB] Get:106 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get:107 http://deb.debian.org/debian unstable/main amd64 libdlib-data all 19.24.6+dfsg-1 [63.4 MB] Get:108 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.45-1 [281 kB] Get:109 http://deb.debian.org/debian unstable/main amd64 libdlib19.2 amd64 19.24.6+dfsg-1 [3819 kB] Get:110 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get:111 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:112 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:113 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:114 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:115 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:116 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get:117 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get:118 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:119 http://deb.debian.org/debian unstable/main amd64 libglapi-mesa amd64 24.3.3-1 [38.0 kB] Get:120 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Get:121 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get:122 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get:123 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get:124 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:125 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get:126 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:127 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Get:128 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get:129 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:130 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Get:131 http://deb.debian.org/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get:132 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:133 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:134 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-1 [26.0 MB] Get:135 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get:136 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get:137 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get:138 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get:139 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3-1+b3 [8852 B] Get:140 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 24.3.3-1 [9488 kB] Get:141 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.4.304.0-1 [129 kB] Get:142 http://deb.debian.org/debian unstable/main amd64 libwayland-server0 amd64 1.23.0-1+b1 [34.2 kB] Get:143 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 24.3.3-1 [43.5 kB] Get:144 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 24.3.3-1 [44.9 kB] Get:145 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 24.3.3-1 [142 kB] Get:146 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get:147 http://deb.debian.org/debian unstable/main amd64 libtbbmalloc2 amd64 2022.0.0-1 [49.1 kB] Get:148 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get:149 http://deb.debian.org/debian unstable/main amd64 libtbbbind-2-5 amd64 2022.0.0-1 [14.4 kB] Get:150 http://deb.debian.org/debian unstable/main amd64 libtbb12 amd64 2022.0.0-1 [90.9 kB] Get:151 http://deb.debian.org/debian unstable/main amd64 libopencv-core406t64 amd64 4.6.0+dfsg-14+b3 [1141 kB] Get:152 http://deb.debian.org/debian unstable/main amd64 libtbb-dev amd64 2022.0.0-1 [199 kB] Get:153 http://deb.debian.org/debian unstable/main amd64 libopencv-core-dev amd64 4.6.0+dfsg-14+b3 [1889 kB] Get:154 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.45-1 [367 kB] Get:155 http://deb.debian.org/debian unstable/main amd64 libsqlite3-dev amd64 3.46.1-1 [1107 kB] Get:156 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:157 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get:158 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get:159 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get:160 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:161 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get:162 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB] Get:163 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get:164 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get:165 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.1-3 [2151 kB] Get:166 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get:167 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.1-3 [5013 kB] Get:168 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB] Get:169 http://deb.debian.org/debian unstable/main amd64 pybind11-dev all 2.13.6-1 [204 kB] Get:170 http://deb.debian.org/debian unstable/main amd64 libdlib-dev amd64 19.24.6+dfsg-1 [2187 kB] Get:171 http://deb.debian.org/debian unstable/main amd64 libgzstream0 amd64 1.5+git20171107.9a20658-3 [7032 B] Get:172 http://deb.debian.org/debian unstable/main amd64 libgzstream-dev amd64 1.5+git20171107.9a20658-3 [7332 B] Preconfiguring packages ... Fetched 195 MB in 13s (15.5 MB/s) Selecting previously unselected package tzdata. (Reading database ... 23043 files and directories currently installed.) Preparing to unpack .../000-tzdata_2025a-1_all.deb ... Unpacking tzdata (2025a-1) ... Selecting previously unselected package netbase. Preparing to unpack .../001-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../004-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.45-3+b1_amd64.deb ... 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Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../031-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../032-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../033-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../034-hdf5-helpers_1.14.5+repack-3_amd64.deb ... Unpacking hdf5-helpers (1.14.5+repack-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../035-libkrb5support0_1.21.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../036-libk5crypto3_1.21.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../037-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../038-libkrb5-3_1.21.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../039-libgssapi-krb5-2_1.21.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ... Selecting previously unselected package libgssrpc4t64:amd64. Preparing to unpack .../040-libgssrpc4t64_1.21.3-4_amd64.deb ... Unpacking libgssrpc4t64:amd64 (1.21.3-4) ... Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../041-libkadm5clnt-mit12_1.21.3-4_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-4) ... Selecting previously unselected package libkdb5-10t64:amd64. 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Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libicu72:amd64 (72.1-6) ... Setting up libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Setting up libzstd-dev:amd64 (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.4-1) ... Setting up hdf5-helpers (1.14.5+repack-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:amd64 (1.7.0-1+b2) ... Setting up libxcb-glx0:amd64 (1.17.0-2+b1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libboost-program-options1.83-dev:amd64 (1.83.0-4) ... Setting up libsensors-config (1:3.6.0-10) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 22 13:21:12 UTC 2025. Universal Time is now: Wed Jan 22 13:21:12 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... Setting up libpython3.13-minimal:amd64 (3.13.1-3) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.22.0-1+b1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.8-2) ... Setting up libsqlite3-dev:amd64 (3.46.1-1) ... Setting up libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxcb-sync1:amd64 (1.17.0-2+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libldap-dev:amd64 (2.6.9+dfsg-1) ... Setting up comerr-dev:amd64 (2.1-1.47.2-1) ... Setting up libssl-dev:amd64 (3.4.0-2) ... Setting up libpng16-16t64:amd64 (1.6.45-1) ... Setting up libhwloc15:amd64 (2.11.2-1) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libsensors5:amd64 (1:3.6.0-10+b1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libidn2-dev:amd64 (2.3.7-2+b1) ... Setting up libglapi-mesa:amd64 (24.3.3-1) ... Setting up libgfortran5:amd64 (14.2.0-14) ... Setting up libvulkan1:amd64 (1.4.304.0-1) ... Setting up autoconf (2.72-3) ... Setting up libgzstream0:amd64 (1.5+git20171107.9a20658-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libxshmfence1:amd64 (1.3-1+b3) ... Setting up libxcb-randr0:amd64 (1.17.0-2+b1) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtasn1-6-dev:amd64 (4.19.0-3+b3) ... Setting up libdrm-common (2.4.123-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libdlib-data (19.24.6+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libblas-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libpython3.13:amd64 (3.13.1-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.7-1) ... Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libarpack2t64:amd64 (3.9.1-4) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up nettle-dev:amd64 (3.10-1+b1) ... Setting up libtool (2.5.4-2) ... Setting up libpng-dev:amd64 (1.6.45-1) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libsuperlu7:amd64 (7.0.0+dfsg1-2) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b4) ... Setting up libtbbbind-2-5:amd64 (2022.0.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libdlib19.2:amd64 (19.24.6+dfsg-1) ... Setting up libgzstream-dev:amd64 (1.5+git20171107.9a20658-3) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libpython3.13-dev:amd64 (3.13.1-3) ... Setting up liblapack-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up groff-base (1.23.0-7) ... Setting up libarmadillo14 (1:14.2.1+dfsg-1+b1) ... Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libgnutls28-dev:amd64 (3.8.8-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up libarpack2-dev:amd64 (3.9.1-4) ... Setting up libpython3-dev:amd64 (3.13.1-2) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libcurl4t64:amd64 (8.11.1-1+b1) ... Setting up libdrm-radeon1:amd64 (2.4.123-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libdrm-intel1:amd64 (2.4.123-1) ... Setting up libx11-dev:amd64 (2:1.8.10-2) ... Setting up libtbb12:amd64 (2022.0.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up pybind11-dev (2.13.6-1) ... Setting up libgssrpc4t64:amd64 (1.21.3-4) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up libtbb-dev:amd64 (2022.0.0-1) ... Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-4) ... Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up mesa-libgallium:amd64 (24.3.3-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-4) ... Setting up libgbm1:amd64 (24.3.3-1) ... Setting up libgl1-mesa-dri:amd64 (24.3.3-1) ... Setting up debhelper (13.24.1) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-4) ... Setting up krb5-multidev:amd64 (1.21.3-4) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libglx-mesa0:amd64 (24.3.3-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up libkrb5-dev:amd64 (1.21.3-4) ... Setting up libcurl4-openssl-dev:amd64 (8.11.1-1+b1) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libopencv-core406t64:amd64 (4.6.0+dfsg-14+b3) ... Setting up libarmadillo-dev (1:14.2.1+dfsg-1+b1) ... Setting up libopencv-core-dev:amd64 (4.6.0+dfsg-14+b3) ... Setting up libdlib-dev:amd64 (19.24.6+dfsg-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-5) ... +------------------------------------------------------------------------------+ | Check architectures Wed, 22 Jan 2025 13:21:13 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Wed, 22 Jan 2025 13:21:13 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.11.10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1 (2024-11-23) amd64 (x86_64) Toolchain package versions: binutils_2.43.50.20250108-1 dpkg-dev_1.22.14 g++-13_13.3.0-12 g++-14_14.2.0-14 gcc-13_13.3.0-12 gcc-14_14.2.0-14 libc6-dev_2.40-5 libstdc++-13-dev_13.3.0-12 libstdc++-14-dev_14.2.0-14 libstdc++6_14.2.0-14 linux-libc-dev_6.12.10-1 Package versions: adduser_3.137 apt_2.9.24 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1 binutils_2.43.50.20250108-1 binutils-common_2.43.50.20250108-1 binutils-x86-64-linux-gnu_2.43.50.20250108-1 bsdextrautils_2.40.4-1 bsdutils_1:2.40.4-1 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-13_13.3.0-12 cpp-13-x86-64-linux-gnu_13.3.0-12 cpp-14_14.2.0-14 cpp-14-x86-64-linux-gnu_14.2.0-14 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-11 debconf_1.5.89 debhelper_13.24.1 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-1 diffutils_1:3.10-2 dirmngr_2.2.46-1+b1 dpkg_1.22.14 dpkg-dev_1.22.14 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-13_13.3.0-12 g++-13-x86-64-linux-gnu_13.3.0-12 g++-14_14.2.0-14 g++-14-x86-64-linux-gnu_14.2.0-14 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.3.0-12 gcc-13-base_13.3.0-12 gcc-13-x86-64-linux-gnu_13.3.0-12 gcc-14_14.2.0-14 gcc-14-base_14.2.0-14 gcc-14-x86-64-linux-gnu_14.2.0-14 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 gnupg_2.2.46-1 gnupg-l10n_2.2.46-1 gnupg-utils_2.2.46-1+b1 gpg_2.2.46-1+b1 gpg-agent_2.2.46-1+b1 gpg-wks-client_2.2.46-1+b1 gpgconf_2.2.46-1+b1 gpgsm_2.2.46-1+b1 gpgv_2.2.46-1+b1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hdf5-helpers_1.14.5+repack-3 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-4 libacl1_2.3.2-2+b1 libaec-dev_1.1.3-1+b1 libaec0_1.1.3-1+b1 libapt-pkg6.0t64_2.9.24 libarchive-zip-perl_1.68-1 libarmadillo-dev_1:14.2.1+dfsg-1+b1 libarmadillo14_1:14.2.1+dfsg-1+b1 libarpack2-dev_3.9.1-4 libarpack2t64_3.9.1-4 libasan8_14.2.0-14 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-14 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b1 libbinutils_2.43.50.20250108-1 libblas-dev_3.12.0-4 libblas3_3.12.0-4 libblkid1_2.40.4-1 libboost-dev_1.83.0.2+b2 libboost-program-options-dev_1.83.0.2+b2 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zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Wed, 22 Jan 2025 13:21:13 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seer Binary: seer Architecture: any Version: 1.1.4-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/johnlees/seer Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/seer Vcs-Git: https://salsa.debian.org/med-team/seer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev Package-List: seer deb science optional arch=any Checksums-Sha1: 01aa93df82b6e563f5e06ae47592ae0d98dce2da 972155 seer_1.1.4.orig.tar.gz 5aa0a353c526b23aa829e7334114d8dc53db98b6 9428 seer_1.1.4-8.debian.tar.xz Checksums-Sha256: 96e55b9fe2cde089ff05bbcd55088832e90f44a968a81a8dca9f9cffa6faa9c1 972155 seer_1.1.4.orig.tar.gz da8005864a8263d365688589347dde52f8b3b1b8f14815ea2b217d4a517878a7 9428 seer_1.1.4-8.debian.tar.xz Files: e4b331eaf17819aabc545b032148d8c2 972155 seer_1.1.4.orig.tar.gz cdc4d5c7115c74ca5cac6707ab79c095 9428 seer_1.1.4-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmajW6IACgkQYAMWptwn dHY7Sw/+LMOjwUDySwXEGK96jxofSYObOdZ6az9neFTRNYP2ewPbVjRUE8MLtbz9 1K5wQfi8yTKaEAcgsw2srI409p5HjBmkzkf+MYyfaMdeXltyukPKwVfyuV4jcpDz xXQHd8QFOlldv9NWjIrGR/iTdBhVsDwDTaHArQzOw784lnoFRG4UtHMeKniij1Vv d+c+CKsW9khqk0ZJTJIgfsMxgCfrPIwWOZl+UZBlBaJt5C3k4q9ybZur/6pRbhY9 yTdu130Wb+SE51awz+Xzjrd9HEdwvs0PaPVWcicu7XpS+4MoIKiQ77+PG9z2Y03m nJx+1/V21qsWvfy7hJstIvNFiURdWgbylp4GSp9Dd1jitq8U9XpF1VeakFP0ljL+ aNFhLtdbMxo+C/yDn5jAseLVUYTvCKFuY3k3txs1avDUPuI4Cf6D7dn6pdgXTcuo JBTehdE1CGW0Tnra/m4MxxIuWeMFfDBul4+hMK+mFd2Zfze8ogTNPACw1d2d12ud obUK2vi+RzXH8Jn59PhuT2H3ZCQckZXUr7BJKhBB/k0X9JoBjAmtQMkm8n0fxo80 3Ch4hCMEVrxiMspu6LPyici44JwMMP+rdzyfibWb0YkZH5Jv51LC9PCrbrmMhlLN eh4GwwmIoPovbvEwnhWigZBnXfYX6Hw+qj47+DHTVZKk8YtbD+U= =wA1R -----END PGP SIGNATURE----- gpgv: Signature made Fri Jul 26 08:17:38 2024 UTC gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seer_1.1.4-8.dsc: no acceptable signature found dpkg-source: info: extracting seer in /build/seer-PEPgK9/seer-1.1.4 dpkg-source: info: unpacking seer_1.1.4.orig.tar.gz dpkg-source: info: unpacking seer_1.1.4-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_lib_location.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying gcc11.patch dpkg-source: info: applying typos.patch dpkg-source: info: applying cpp14.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Wed, 22 Jan 2025 13:21:13 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network seer_1.1.4-8 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network seer_1.1.4-8 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/seer-PEPgK9/seer-1.1.4 SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-2028b507-45fe-4298-bfaa-53406e79c029 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package seer dpkg-buildpackage: info: source version 1.1.4-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j2 clean make[1]: Entering directory '/build/seer-PEPgK9/seer-1.1.4' cd src && make clean make[2]: Entering directory '/build/seer-PEPgK9/seer-1.1.4/src' rm -f *.o ~* seer kmds map_back combineKmers filter_seer make[2]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4/src' cd test && make clean make[2]: Entering directory '/build/seer-PEPgK9/seer-1.1.4/test' rm -f *.o ~* tests_passed make[2]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4/test' make[1]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building seer using existing ./seer_1.1.4.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building seer in seer_1.1.4-8.debian.tar.xz dpkg-source: info: building seer in seer_1.1.4-8.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/seer-PEPgK9/seer-1.1.4' dh_auto_build -- LDFLAGS+=-L/usr/lib/x86_64-linux-gnu/hdf5/serial make -j2 "INSTALL=install --strip-program=true" LDFLAGS\+=-L/usr/lib/x86_64-linux-gnu/hdf5/serial make[2]: Entering directory '/build/seer-PEPgK9/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/seer-PEPgK9/seer-1.1.4/src' g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o sample.o sample.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o significant_kmer.o significant_kmer.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmer.o kmer.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o covar.o covar.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCommon.o seerCommon.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerErr.o seerErr.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerIO.o seerIO.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBasicFilter.o seerBasicFilter.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerMain.o seerMain.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCmdLine.o seerCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerStats.o seerStats.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerContinuousAssoc.o seerContinuousAssoc.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBinaryAssoc.o seerBinaryAssoc.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o logitFunction.o logitFunction.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o linearFunction.o linearFunction.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsMain.o kmdsMain.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsStruct.o kmdsStruct.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsCmdLine.o kmdsCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o fasta.o fasta.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapMain.o mapMain.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapCmdLine.o mapCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineInit.o combineInit.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineCmdLine.o combineCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineKmers.o combineKmers.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filter_seer.o filter_seer.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filterCmdLine.o filterCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o seerMain.o seerCmdLine.o seerStats.o seerContinuousAssoc.o seerBinaryAssoc.o logitFunction.o linearFunction.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o seer g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o kmdsMain.o kmdsStruct.o kmdsCmdLine.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o kmds g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial fasta.o significant_kmer.o mapMain.o mapCmdLine.o -lboost_program_options -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o map_back g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial combineInit.o combineCmdLine.o combineKmers.o -lgzstream -lz -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o combineKmers g++ -g -O2 -ffile-prefix-map=/build/seer-PEPgK9/seer-1.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial significant_kmer.o filter_seer.o filterCmdLine.o -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o filter_seer make[3]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4/src' make[2]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4' make[1]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/seer-PEPgK9/seer-1.1.4' if dh_auto_test ; then echo Test passed ; else echo '****************************** TEST FAILED. Please contact upstream *******************************' ; fi make -j2 test make[2]: Entering directory '/build/seer-PEPgK9/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/seer-PEPgK9/seer-1.1.4/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4/src' cd test && make test make[3]: Entering directory '/build/seer-PEPgK9/seer-1.1.4/test' ./run_test.pl && touch tests_passed PASSED test 1, basic filters PASSED test 2, binary phenotype assocation PASSED test 3, print output PASSED test 4, continuous phenotype assocation PASSED test 5, assocation with population structure PASSED test 6, assocation with covariates PASSED test 7, filter output PASSED test 8, map k-mers make[3]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4/test' make[2]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4' Test passed make[1]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/seer-PEPgK9/seer-1.1.4' dh_auto_install -- PREFIX=/build/seer-PEPgK9/seer-1.1.4/debian/seer/usr make -j2 install DESTDIR=/build/seer-PEPgK9/seer-1.1.4/debian/seer AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/build/seer-PEPgK9/seer-1.1.4/debian/seer/usr make[2]: Entering directory '/build/seer-PEPgK9/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/seer-PEPgK9/seer-1.1.4/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4/src' cd src && make install make[3]: Entering directory '/build/seer-PEPgK9/seer-1.1.4/src' install -d /build/seer-PEPgK9/seer-1.1.4/debian/seer/usr/bin install seer kmds map_back combineKmers filter_seer /build/seer-PEPgK9/seer-1.1.4/debian/seer/usr/bin make[3]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4/src' make[2]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4' for pl in scripts/*.pl ; do \ plbase=`basename ${pl} .pl` ; \ sed "s+Usage: ./${plbase}.pl+Usage: ${plbase}+" ${pl} > /build/seer-PEPgK9/seer-1.1.4/debian/seer/usr/bin/${plbase} ; \ done # Fix broken usage hint: sed -i "s+Usage: ./hits_to_matrix.pl+Usage: reformat_output+" /build/seer-PEPgK9/seer-1.1.4/debian/seer/usr/bin/reformat_output make[1]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/seer-PEPgK9/seer-1.1.4' dh_fixperms find debian -name Makefile -exec chmod -x \{\} \; find debian -name "*.fa" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/seer-PEPgK9/seer-1.1.4' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/combineKmers was not linked against libz.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seer' in '../seer_1.1.4-8_amd64.deb'. dpkg-deb: building package 'seer-dbgsym' in '../seer-dbgsym_1.1.4-8_amd64.deb'. dpkg-genbuildinfo -O../seer_1.1.4-8_amd64.buildinfo dpkg-genchanges -O../seer_1.1.4-8_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-01-22T13:23:21Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 22 Jan 2025 13:23:21 +0000 | +------------------------------------------------------------------------------+ seer_1.1.4-8_amd64.changes: --------------------------- Format: 1.8 Date: Fri, 26 Jul 2024 09:57:43 +0200 Source: seer Binary: seer seer-dbgsym Architecture: source amd64 Version: 1.1.4-8 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: seer - genomic sequence element (kmer) enrichment analysis Closes: 1074123 Changes: seer (1.1.4-8) unstable; urgency=medium . * Team upload * Building with --std=c++14 to comply with newest dlib (Closes: #1074123) Checksums-Sha1: 5329fbe849639dd8bb275c2b35d50b75bb353cd5 1150 seer_1.1.4-8.dsc 5aa0a353c526b23aa829e7334114d8dc53db98b6 9428 seer_1.1.4-8.debian.tar.xz 45a4d792a05019e87f58b9546b0de939b07278f8 9254960 seer-dbgsym_1.1.4-8_amd64.deb dad2981d930f15f3dde3a3cf43b1217e7508f9a1 10206 seer_1.1.4-8_amd64.buildinfo ebe1e5c245ac5cee1a49d647d7b2d4de6a005c74 1227212 seer_1.1.4-8_amd64.deb Checksums-Sha256: df7d53dd2cc28556ad553475b6aeb1d4029f3622cf7e5fbe50ab4518d002cc1e 1150 seer_1.1.4-8.dsc da8005864a8263d365688589347dde52f8b3b1b8f14815ea2b217d4a517878a7 9428 seer_1.1.4-8.debian.tar.xz d9bf7908a991cbebbc779c733d4ebabe8e25d215b5f2a5242bf4909799af598b 9254960 seer-dbgsym_1.1.4-8_amd64.deb 50c418169dd3fe5b5ca953bb64a029d5fadb7b6ad1e3eb364f05d1155e921125 10206 seer_1.1.4-8_amd64.buildinfo e2b5dda39a07262a2a483dcd83ac33e8746e518ea7e1ed74e79c7ddb5e2e91d6 1227212 seer_1.1.4-8_amd64.deb Files: 974a3c3f7539990e8c2e5fdcb3eecbe7 1150 science optional seer_1.1.4-8.dsc cdc4d5c7115c74ca5cac6707ab79c095 9428 science optional seer_1.1.4-8.debian.tar.xz e5c5abea3d83506a52aa589cfd112cf0 9254960 debug optional seer-dbgsym_1.1.4-8_amd64.deb bcc7966f8ed687a9a0b61886b348ab20 10206 science optional seer_1.1.4-8_amd64.buildinfo 6cd323bcc9fa982dd44456f62075ce84 1227212 science optional seer_1.1.4-8_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Wed, 22 Jan 2025 13:23:21 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: seer Binary: seer seer-dbgsym Architecture: amd64 source 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1:1.16.5-1.3), autopoint (= 0.23.1-1), autotools-dev (= 20220109.1), base-files (= 13.6), base-passwd (= 3.6.6), bash (= 5.2.37-1), binutils (= 2.43.50.20250108-1), binutils-common (= 2.43.50.20250108-1), binutils-x86-64-linux-gnu (= 2.43.50.20250108-1), bsdextrautils (= 2.40.4-1), bsdutils (= 1:2.40.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-1), coreutils (= 9.5-1+b1), cpp (= 4:14.2.0-1), cpp-13 (= 13.3.0-12), cpp-13-x86-64-linux-gnu (= 13.3.0-12), cpp-14 (= 14.2.0-14), cpp-14-x86-64-linux-gnu (= 14.2.0-14), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-11), debconf (= 1.5.89), debhelper (= 13.24.1), debianutils (= 5.21), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-1), diffutils (= 1:3.10-2), dpkg (= 1.22.14), dpkg-dev (= 1.22.14), dwz (= 0.15-1+b1), file (= 1:5.45-3+b1), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-14), g++-14-x86-64-linux-gnu (= 14.2.0-14), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), 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libmagic-mgc (= 1:5.45-3+b1), libmagic1t64 (= 1:5.45-3+b1), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.40.4-1), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.1-1+b2), libncursesw6 (= 6.5-2+b1), libnettle8t64 (= 3.10-1+b1), libnghttp2-14 (= 1.64.0-1), libnghttp2-dev (= 1.64.0-1), libopencv-core-dev (= 4.6.0+dfsg-14+b3), libopencv-core406t64 (= 4.6.0+dfsg-14+b3), libp11-kit-dev (= 0.25.5-3), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.5.3-7+b1), libpam-modules-bin (= 1.5.3-7+b1), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7+b1), libpciaccess0 (= 0.17-3+b3), libpcre2-8-0 (= 10.44-5), libperl5.40 (= 5.40.1-1), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpng-dev (= 1.6.45-1), libpng16-16t64 (= 1.6.45-1), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-dev (= 3.13.1-2), libpython3.13 (= 3.13.1-3), libpython3.13-dev (= 3.13.1-3), libpython3.13-minimal (= 3.13.1-3), libpython3.13-stdlib (= 3.13.1-3), libquadmath0 (= 14.2.0-14), libreadline8t64 (= 8.2-6), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-8+b1), libsasl2-modules-db (= 2.1.28+dfsg1-8+b1), libseccomp2 (= 2.5.5-2), libselinux1 (= 3.7-3+b1), libsensors-config (= 1:3.6.0-10), libsensors5 (= 1:3.6.0-10+b1), libsframe1 (= 2.43.50.20250108-1), libsmartcols1 (= 2.40.4-1), libsqlite3-0 (= 3.46.1-1), libsqlite3-dev (= 3.46.1-1), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.4.0-2), libssl3t64 (= 3.4.0-2), libstdc++-14-dev (= 14.2.0-14), libstdc++6 (= 14.2.0-14), libsuperlu-dev (= 7.0.0+dfsg1-2), libsuperlu7 (= 7.0.0+dfsg1-2), libsystemd0 (= 257.2-2), libsz2 (= 1.1.3-1+b1), libtasn1-6 (= 4.19.0-3+b3), libtasn1-6-dev (= 4.19.0-3+b3), libtbb-dev (= 2022.0.0-1), libtbb12 (= 2022.0.0-1), libtbbbind-2-5 (= 2022.0.0-1), libtbbmalloc2 (= 2022.0.0-1), libtinfo6 (= 6.5-2+b1), libtool (= 2.5.4-2), libtsan2 (= 14.2.0-14), libubsan1 (= 14.2.0-14), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.2-2), libunbound8 (= 1.22.0-1+b1), libunistring5 (= 1.3-1), libuuid1 (= 2.40.4-1), libvulkan1 (= 1.4.304.0-1), libwayland-server0 (= 1.23.0-1+b1), libx11-6 (= 2:1.8.10-2), libx11-data (= 2:1.8.10-2), libx11-dev (= 2:1.8.10-2), libx11-xcb1 (= 2:1.8.10-2), libxau-dev (= 1:1.0.11-1), libxau6 (= 1:1.0.11-1), libxcb-dri3-0 (= 1.17.0-2+b1), libxcb-glx0 (= 1.17.0-2+b1), libxcb-present0 (= 1.17.0-2+b1), libxcb-randr0 (= 1.17.0-2+b1), libxcb-shm0 (= 1.17.0-2+b1), libxcb-sync1 (= 1.17.0-2+b1), libxcb-xfixes0 (= 1.17.0-2+b1), libxcb1 (= 1.17.0-2+b1), libxcb1-dev (= 1.17.0-2+b1), libxdmcp-dev (= 1:1.1.5-1), libxdmcp6 (= 1:1.1.5-1), libxext6 (= 2:1.3.4-1+b3), libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1), libxshmfence1 (= 1.3-1+b3), libxxf86vm1 (= 1:1.1.4-1+b4), libz3-4 (= 4.13.3-1), libzstd-dev (= 1.5.6+dfsg-2), libzstd1 (= 1.5.6+dfsg-2), linux-libc-dev (= 6.12.10-1), m4 (= 1.4.19-5), make (= 4.4.1-1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), media-types (= 10.1.0), mesa-libgallium (= 24.3.3-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2+b1), netbase (= 6.4), nettle-dev (= 3.10-1+b1), openssl-provider-legacy (= 3.4.0-2), patch (= 2.7.6-7), perl (= 5.40.1-1), perl-base (= 5.40.1-1), perl-modules-5.40 (= 5.40.1-1), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), pybind11-dev (= 2.13.6-1), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.13-1), tar (= 1.35+dfsg-3.1), tzdata (= 2025a-1), util-linux (= 2.40.4-1), x11proto-dev (= 2024.1-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.6.3-1+b1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1721980663" +------------------------------------------------------------------------------+ | Package contents Wed, 22 Jan 2025 13:23:21 +0000 | +------------------------------------------------------------------------------+ seer-dbgsym_1.1.4-8_amd64.deb ----------------------------- new Debian package, version 2.0. size 9254960 bytes: control archive=800 bytes. 523 bytes, 12 lines control 611 bytes, 6 lines md5sums Package: seer-dbgsym Source: seer Version: 1.1.4-8 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 9699 Depends: seer (= 1.1.4-8) Section: debug Priority: optional Description: debug symbols for seer Build-Ids: 3e7acedc7b47ab9a69173b721d6321821f4d0145 518fd3cae11beff935467f74fe755ff849b7429f 59e5275169e4b48785dbca3da3cad4a4e2fbb76d 62ef35e3cc8bb3ed18629d6243371210b7640c71 973583e060fcd2322232f3f6e049222d01a9bb4b drwxr-xr-x root/root 0 2024-07-26 07:57 ./ drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/ drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/lib/ drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/lib/debug/.build-id/3e/ -rw-r--r-- root/root 510480 2024-07-26 07:57 ./usr/lib/debug/.build-id/3e/7acedc7b47ab9a69173b721d6321821f4d0145.debug drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/lib/debug/.build-id/51/ -rw-r--r-- root/root 412616 2024-07-26 07:57 ./usr/lib/debug/.build-id/51/8fd3cae11beff935467f74fe755ff849b7429f.debug drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/lib/debug/.build-id/59/ -rw-r--r-- root/root 3075344 2024-07-26 07:57 ./usr/lib/debug/.build-id/59/e5275169e4b48785dbca3da3cad4a4e2fbb76d.debug drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/lib/debug/.build-id/62/ -rw-r--r-- root/root 3804032 2024-07-26 07:57 ./usr/lib/debug/.build-id/62/ef35e3cc8bb3ed18629d6243371210b7640c71.debug drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/lib/debug/.build-id/97/ -rw-r--r-- root/root 1013264 2024-07-26 07:57 ./usr/lib/debug/.build-id/97/3583e060fcd2322232f3f6e049222d01a9bb4b.debug drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 1097552 2024-07-26 07:57 ./usr/lib/debug/.dwz/x86_64-linux-gnu/seer.debug drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/share/ drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-07-26 07:57 ./usr/share/doc/seer-dbgsym -> seer seer_1.1.4-8_amd64.deb ---------------------- new Debian package, version 2.0. size 1227212 bytes: control archive=2700 bytes. 1458 bytes, 24 lines control 4326 bytes, 62 lines md5sums Package: seer Version: 1.1.4-8 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 5063 Depends: libarmadillo14 (>= 1:14.2.1+dfsg), libblas3 | libblas.so.3, libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgzstream0 (>= 1.5+git20171107.9a20658), libhdf5-310 (>= 1.14.3), libstdc++6 (>= 14), zlib1g (>= 1:1.1.4), libtext-csv-perl Suggests: fsm-lite Section: science Priority: optional Homepage: https://github.com/johnlees/seer Description: genomic sequence element (kmer) enrichment analysis Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics. drwxr-xr-x root/root 0 2024-07-26 07:57 ./ drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/ drwxr-xr-x root/root 0 2024-07-26 07:57 ./usr/bin/ -rwxr-xr-x root/root 4597 2024-07-26 07:57 ./usr/bin/R_mds -rwxr-xr-x root/root 3794 2024-07-26 07:57 ./usr/bin/blast_top_hits -rwxr-xr-x root/root 2152 2024-07-26 07:57 ./usr/bin/blastn_to_phandango -rwxr-xr-x root/root 113048 2024-07-26 07:57 ./usr/bin/combineKmers -rwxr-xr-x root/root 88472 2024-07-26 07:57 ./usr/bin/filter_seer -rwxr-xr-x root/root 1869 2024-07-26 07:57 ./usr/bin/hits_to_fastq -rwxr-xr-x root/root 634296 2024-07-26 07:57 ./usr/bin/kmds -rwxr-xr-x root/root 203176 2024-07-26 07:57 ./usr/bin/map_back -rwxr-xr-x root/root 3200 2024-07-26 07:57 ./usr/bin/mapping_to_phandango -rwxr-xr-x root/root 1208 2024-07-26 07:57 ./usr/bin/mash2matrix 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+------------------------------------------------------------------------------+ | Cleanup Wed, 22 Jan 2025 13:23:22 +0000 | +------------------------------------------------------------------------------+ Purging /build/seer-PEPgK9 Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 22 Jan 2025 13:23:23 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 126188 Build-Time: 128 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 31 Job: /srv/debomatic/incoming/seer_1.1.4-8.dsc Machine Architecture: amd64 Package: seer Package-Time: 168 Source-Version: 1.1.4-8 Space: 126188 Status: successful Version: 1.1.4-8 -------------------------------------------------------------------------------- Finished at 2025-01-22T13:23:21Z Build needed 00:02:48, 126188k disk space