sbuild (Debian sbuild) 0.88.2 (16 January 2025) on carme.larted.org.uk

+==============================================================================+
| roary 3.13.0+dfsg-2 (amd64)                  Wed, 22 Jan 2025 12:13:17 +0000 |
+==============================================================================+

Package: roary
Version: 3.13.0+dfsg-2
Source Version: 3.13.0+dfsg-2
Distribution: perl-5.40-throwaway
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: full

I: Setting up the chroot...
I: Creating chroot session...
I: Setting up log color...

+------------------------------------------------------------------------------+
| Chroot Setup Commands                        Wed, 22 Jan 2025 12:13:18 +0000 |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup roary_3.13.0+dfsg-2 perl-5.40-throwaway amd64
--------------------------------------------------------------------------------------------------------------------


I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup roary_3.13.0+dfsg-2 perl-5.40-throwaway amd64'.

Finished processing commands.
--------------------------------------------------------------------------------
I: Setting up apt archive...

+------------------------------------------------------------------------------+
| Update chroot                                Wed, 22 Jan 2025 12:13:18 +0000 |
+------------------------------------------------------------------------------+

Get:1 file:/srv/reprepro perl-5.40 InRelease [3030 B]
Get:2 http://deb.debian.org/debian unstable InRelease [205 kB]
Get:3 http://localhost:3142/debian sid InRelease [205 kB]
Get:1 file:/srv/reprepro perl-5.40 InRelease [3030 B]
Get:4 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [144 kB]
Get:6 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB]
Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [144 kB]
Get:7 http://localhost:3142/debian sid/main Sources T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [147 kB]
Get:8 file:/srv/reprepro perl-5.40/main amd64 Packages [8875 B]
Get:7 http://localhost:3142/debian sid/main Sources T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [147 kB]
Fetched 829 kB in 3s (259 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  apt libapt-pkg6.0t64
2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 2494 kB of archives.
After this operation, 4096 B disk space will be freed.
Get:1 http://deb.debian.org/debian unstable/main amd64 libapt-pkg6.0t64 amd64 2.9.24 [1114 kB]
Get:2 http://deb.debian.org/debian unstable/main amd64 apt amd64 2.9.24 [1380 kB]
Fetched 2494 kB in 0s (79.3 MB/s)
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 23043 files and directories currently installed.)
Preparing to unpack .../libapt-pkg6.0t64_2.9.24_amd64.deb ...
Unpacking libapt-pkg6.0t64:amd64 (2.9.24) over (2.9.23) ...
Setting up libapt-pkg6.0t64:amd64 (2.9.24) ...
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 23043 files and directories currently installed.)
Preparing to unpack .../archives/apt_2.9.24_amd64.deb ...
Unpacking apt (2.9.24) over (2.9.23) ...
Setting up apt (2.9.24) ...
Processing triggers for libc-bin (2.40-5) ...

+------------------------------------------------------------------------------+
| Fetch source files                           Wed, 22 Jan 2025 12:13:25 +0000 |
+------------------------------------------------------------------------------+


Local sources
-------------

/srv/debomatic/incoming/roary_3.13.0+dfsg-2.dsc exists in /srv/debomatic/incoming; copying to chroot

+------------------------------------------------------------------------------+
| Install package build dependencies           Wed, 22 Jan 2025 12:13:25 +0000 |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree, build-essential, perl
Filtered Build-Depends: debhelper-compat (= 13), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree, build-essential, perl
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/roary-6JKoJ0/resolver-q1MON1/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/build/roary-6JKoJ0/resolver-q1MON1/apt_archive ./ InRelease
Get:2 copy:/build/roary-6JKoJ0/resolver-q1MON1/apt_archive ./ Release [615 B]
Ign:3 copy:/build/roary-6JKoJ0/resolver-q1MON1/apt_archive ./ Release.gpg
Get:4 copy:/build/roary-6JKoJ0/resolver-q1MON1/apt_archive ./ Sources [1154 B]
Get:5 copy:/build/roary-6JKoJ0/resolver-q1MON1/apt_archive ./ Packages [1174 B]
Fetched 2943 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bedtools bioperl bsdextrautils
  ca-certificates cd-hit debhelper dh-autoreconf dh-dist-zilla
  dh-strip-nondeterminism dwz fasttree file fontconfig fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono gettext gettext-base groff-base
  intltool-debian libalgorithm-c3-perl libalgorithm-diff-perl libaliased-perl
  libapp-cmd-perl libarchive-zip-perl libarray-utils-perl libautobox-perl
  libb-hooks-endofscope-perl libb-hooks-op-check-perl libbio-perl-perl
  libblas3 libbrotli1 libcairo2 libcapture-tiny-perl libcarp-clan-perl
  libclass-c3-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl
  libclass-singleton-perl libclass-xsaccessor-perl libclone-perl libcom-err2
  libconfig-ini-perl libconfig-mvp-perl libconfig-mvp-reader-ini-perl
  libconst-fast-perl libcpan-uploader-perl libcpanel-json-xs-perl libcurl4t64
  libdata-compare-perl libdata-optlist-perl libdata-section-perl
  libdata-stag-perl libdatetime-locale-perl libdatetime-perl
  libdatetime-timezone-perl libdatrie1 libdebhelper-perl libdeflate0
  libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdist-zilla-perl
  libdist-zilla-plugin-podweaver-perl libdynaloader-functions-perl libelf1t64
  libencode-locale-perl libenv-path-perl libeval-closure-perl
  libexception-class-perl libexpat1 libexporter-tiny-perl libfile-chdir-perl
  libfile-copy-recursive-perl libfile-find-rule-perl libfile-grep-perl
  libfile-listing-perl libfile-pushd-perl libfile-sharedir-install-perl
  libfile-sharedir-perl libfile-slurper-perl libfile-stripnondeterminism-perl
  libfile-which-perl libfindbin-libs-perl libfontconfig1 libfreetype6
  libfribidi0 libgetopt-long-descriptive-perl libgfortran5 libglib2.0-0t64
  libgraph-perl libgraph-readwrite-perl libgraphite2-3 libgssapi-krb5-2
  libharfbuzz0b libhash-merge-simple-perl libheap-perl libhtml-parser-perl
  libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
  libhttp-message-perl libhttp-negotiate-perl libice6 libicu72
  libimport-into-perl libio-all-perl libio-html-perl libio-socket-ssl-perl
  libio-string-perl libio-stringy-perl libio-tiecombine-perl libjbig0
  libjpeg62-turbo libjson-maybexs-perl libjson-perl libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 liblapack3 liblerc4 liblist-moreutils-perl
  liblist-moreutils-xs-perl liblmdb0 liblog-dispatch-array-perl
  liblog-dispatch-perl liblog-dispatchouli-perl liblog-log4perl-perl
  liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64
  libmbedcrypto16 libmbedtls21 libmbedx509-7 libmixin-linewise-perl
  libmodule-implementation-perl libmodule-path-perl libmodule-pluggable-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoo-perl
  libmoose-autobox-perl libmoose-perl libmoosex-lazyrequire-perl
  libmoosex-oneargnew-perl libmoosex-role-parameterized-perl
  libmoosex-setonce-perl libmoosex-types-perl libmoosex-types-perl-perl
  libmro-compat-perl libnamespace-autoclean-perl libnamespace-clean-perl
  libnet-http-perl libnet-ssleay-perl libnghttp2-14 libnumber-compare-perl
  libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2
  libparams-classify-perl libparams-util-perl libparams-validate-perl
  libparams-validationcompiler-perl libparse-yapp-perl libpath-tiny-perl
  libperl-prereqscanner-perl libperl-version-perl libperlio-utf8-strict-perl
  libpipeline1 libpixman-1-0 libpng16-16t64 libpod-elemental-perl
  libpod-elemental-perlmunger-perl libpod-eventual-perl libpod-weaver-perl
  libppi-perl libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal
  libpython3.13-stdlib librole-hasmessage-perl librole-identifiable-perl
  librole-tiny-perl librtmp1 libsafe-isa-perl libscope-guard-perl
  libsensors-config libsensors5 libset-object-perl libsharpyuv0 libsm6
  libsoftware-license-perl libspecio-perl libspiffy-perl libssh2-1t64
  libstring-errf-perl libstring-flogger-perl libstring-formatter-perl
  libstring-rewriteprefix-perl libstring-truncate-perl
  libsub-exporter-formethods-perl libsub-exporter-globexporter-perl
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl
  libsyntax-keyword-junction-perl libtask-weaken-perl libtcl8.6
  libterm-encoding-perl libterm-readkey-perl libtest-deep-perl
  libtest-differences-perl libtest-exception-perl libtest-file-perl
  libtest-files-perl libtest-most-perl libtest-output-perl libtest-warn-perl
  libtest2-suite-perl libtext-charwidth-perl libtext-csv-perl
  libtext-diff-perl libtext-glob-perl libtext-template-perl
  libtext-wrapi18n-perl libthai-data libthai0 libthrowable-perl
  libtie-ixhash-perl libtiff6 libtimedate-perl libtingea0 libtirpc-common
  libtirpc3t64 libtk8.6 libtool libtry-tiny-perl libtype-tiny-perl
  libuchardet0 liburi-perl libuv1t64 libvariable-magic-perl libwebp7
  libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
  libxml-parser-perl libxml-writer-perl libxml2 libxrender1 libxss1
  libxstring-perl libxt6t64 libyaml-pp-perl libyaml-tiny-perl m4 mafft man-db
  mcl media-types ncbi-blast+ ncbi-data netbase openssl parallel
  perl-openssl-defaults po-debconf prank procps python3 python3-minimal
  python3.13 python3.13-minimal r-base-core sensible-utils sysstat tzdata ucf
  unzip x11-common xdg-utils zip
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make
  libdist-zilla-app-command-authordebs-perl pristine-tar gettext-doc
  libasprintf-dev libgettextpo-dev groff libxml-sax-expatxs-perl
  libscalar-properties-perl low-memory-monitor krb5-doc krb5-user
  libdata-dump-perl libdb-file-lock-perl libfile-mimeinfo-perl
  libfile-readbackwards-perl libfreezethaw-perl libmldbm-perl libdbd-csv-perl
  liblog-dispatch-filerotate-perl librrds-perl libxml-dom-perl
  libcrypt-ssleay-perl libscalar-number-perl lm-sensors libtest-fatal-perl
  tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk
  libdevel-lexalias-perl libbusiness-isbn-perl libmime-base32-perl
  libregexp-ipv6-perl libauthen-ntlm-perl m4-doc apparmor less www-browser
  mcl-doc csh fish ksh tcsh zsh libmail-box-perl python3-doc python3-tk
  python3-venv python3.13-venv python3.13-doc binfmt-support elpa-ess
  r-doc-info | r-doc-pdf r-mathlib r-base-html isag
Recommended packages:
  bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libdbi-perl
  libgd-gd2-perl libapache-dbi-perl libxml-simple-perl libyaml-perl
  libace-perl libxml-twig-perl libset-scalar-perl devscripts curl | wget
  | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl
  libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
  libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
  libdbd-pg-perl libgd-perl libgraphviz-perl libhtml-tableextract-perl
  libpostscript-perl libsoap-lite-perl libsort-naturally-perl
  libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl
  libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-perl
  libxml-sax-writer-perl libxml-libxml-perl libclass-c3-xs-perl perl-tk
  libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl
  libxml-perl bash-completion cpanminus libarchive-tar-wrapper-perl
  libpod-coverage-trustpod-perl libterm-readline-gnu-perl libterm-ui-perl
  libtest-cpan-meta-perl libtest-pod-coverage-perl libtest-pod-perl
  libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libhtml-format-perl libio-compress-brotli-perl libjson-xs-perl
  krb5-locales libmail-sendmail-perl libmailtools-perl libmime-lite-perl
  libipc-shareable-perl libdevel-partialdump-perl libunicode-utf8-perl
  publicsuffix libref-util-perl libtext-csv-xs-perl libltdl-dev
  libtype-tiny-xs-perl libdata-dump-perl libhtml-form-perl libhttp-daemon-perl
  blast2 lynx ruby psmisc linux-sysctl-defaults r-recommended r-base-dev
  r-doc-html systemd | cron | cron-daemon libfile-mimeinfo-perl
  libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bedtools bioperl bsdextrautils
  ca-certificates cd-hit debhelper dh-autoreconf dh-dist-zilla
  dh-strip-nondeterminism dwz fasttree file fontconfig fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono gettext gettext-base groff-base
  intltool-debian libalgorithm-c3-perl libalgorithm-diff-perl libaliased-perl
  libapp-cmd-perl libarchive-zip-perl libarray-utils-perl libautobox-perl
  libb-hooks-endofscope-perl libb-hooks-op-check-perl libbio-perl-perl
  libblas3 libbrotli1 libcairo2 libcapture-tiny-perl libcarp-clan-perl
  libclass-c3-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl
  libclass-singleton-perl libclass-xsaccessor-perl libclone-perl libcom-err2
  libconfig-ini-perl libconfig-mvp-perl libconfig-mvp-reader-ini-perl
  libconst-fast-perl libcpan-uploader-perl libcpanel-json-xs-perl libcurl4t64
  libdata-compare-perl libdata-optlist-perl libdata-section-perl
  libdata-stag-perl libdatetime-locale-perl libdatetime-perl
  libdatetime-timezone-perl libdatrie1 libdebhelper-perl libdeflate0
  libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdist-zilla-perl
  libdist-zilla-plugin-podweaver-perl libdynaloader-functions-perl libelf1t64
  libencode-locale-perl libenv-path-perl libeval-closure-perl
  libexception-class-perl libexpat1 libexporter-tiny-perl libfile-chdir-perl
  libfile-copy-recursive-perl libfile-find-rule-perl libfile-grep-perl
  libfile-listing-perl libfile-pushd-perl libfile-sharedir-install-perl
  libfile-sharedir-perl libfile-slurper-perl libfile-stripnondeterminism-perl
  libfile-which-perl libfindbin-libs-perl libfontconfig1 libfreetype6
  libfribidi0 libgetopt-long-descriptive-perl libgfortran5 libglib2.0-0t64
  libgraph-perl libgraph-readwrite-perl libgraphite2-3 libgssapi-krb5-2
  libharfbuzz0b libhash-merge-simple-perl libheap-perl libhtml-parser-perl
  libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
  libhttp-message-perl libhttp-negotiate-perl libice6 libicu72
  libimport-into-perl libio-all-perl libio-html-perl libio-socket-ssl-perl
  libio-string-perl libio-stringy-perl libio-tiecombine-perl libjbig0
  libjpeg62-turbo libjson-maybexs-perl libjson-perl libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 liblapack3 liblerc4 liblist-moreutils-perl
  liblist-moreutils-xs-perl liblmdb0 liblog-dispatch-array-perl
  liblog-dispatch-perl liblog-dispatchouli-perl liblog-log4perl-perl
  liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64
  libmbedcrypto16 libmbedtls21 libmbedx509-7 libmixin-linewise-perl
  libmodule-implementation-perl libmodule-path-perl libmodule-pluggable-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoo-perl
  libmoose-autobox-perl libmoose-perl libmoosex-lazyrequire-perl
  libmoosex-oneargnew-perl libmoosex-role-parameterized-perl
  libmoosex-setonce-perl libmoosex-types-perl libmoosex-types-perl-perl
  libmro-compat-perl libnamespace-autoclean-perl libnamespace-clean-perl
  libnet-http-perl libnet-ssleay-perl libnghttp2-14 libnumber-compare-perl
  libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2
  libparams-classify-perl libparams-util-perl libparams-validate-perl
  libparams-validationcompiler-perl libparse-yapp-perl libpath-tiny-perl
  libperl-prereqscanner-perl libperl-version-perl libperlio-utf8-strict-perl
  libpipeline1 libpixman-1-0 libpng16-16t64 libpod-elemental-perl
  libpod-elemental-perlmunger-perl libpod-eventual-perl libpod-weaver-perl
  libppi-perl libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal
  libpython3.13-stdlib librole-hasmessage-perl librole-identifiable-perl
  librole-tiny-perl librtmp1 libsafe-isa-perl libscope-guard-perl
  libsensors-config libsensors5 libset-object-perl libsharpyuv0 libsm6
  libsoftware-license-perl libspecio-perl libspiffy-perl libssh2-1t64
  libstring-errf-perl libstring-flogger-perl libstring-formatter-perl
  libstring-rewriteprefix-perl libstring-truncate-perl
  libsub-exporter-formethods-perl libsub-exporter-globexporter-perl
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl
  libsyntax-keyword-junction-perl libtask-weaken-perl libtcl8.6
  libterm-encoding-perl libterm-readkey-perl libtest-deep-perl
  libtest-differences-perl libtest-exception-perl libtest-file-perl
  libtest-files-perl libtest-most-perl libtest-output-perl libtest-warn-perl
  libtest2-suite-perl libtext-charwidth-perl libtext-csv-perl
  libtext-diff-perl libtext-glob-perl libtext-template-perl
  libtext-wrapi18n-perl libthai-data libthai0 libthrowable-perl
  libtie-ixhash-perl libtiff6 libtimedate-perl libtingea0 libtirpc-common
  libtirpc3t64 libtk8.6 libtool libtry-tiny-perl libtype-tiny-perl
  libuchardet0 liburi-perl libuv1t64 libvariable-magic-perl libwebp7
  libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
  libxml-parser-perl libxml-writer-perl libxml2 libxrender1 libxss1
  libxstring-perl libxt6t64 libyaml-pp-perl libyaml-tiny-perl m4 mafft man-db
  mcl media-types ncbi-blast+ ncbi-data netbase openssl parallel
  perl-openssl-defaults po-debconf prank procps python3 python3-minimal
  python3.13 python3.13-minimal r-base-core sbuild-build-depends-main-dummy
  sensible-utils sysstat tzdata ucf unzip x11-common xdg-utils zip
0 upgraded, 314 newly installed, 0 to remove and 0 not upgraded.
Need to get 116 MB/116 MB of archives.
After this operation, 391 MB of additional disk space will be used.
Get:1 file:/srv/reprepro perl-5.40/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.2 kB]
Get:2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB]
Get:3 copy:/build/roary-6JKoJ0/resolver-q1MON1/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1092 B]
Get:4 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get:5 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB]
Get:6 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB]
Get:7 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB]
Get:8 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get:9 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-1 [259 kB]
Get:10 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB]
Get:11 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.1-3 [740 kB]
Get:12 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B]
Get:13 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB]
Get:14 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB]
Get:15 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB]
Get:16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get:17 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.4.0-2 [1422 kB]
Get:18 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB]
Get:19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get:20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get:21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get:22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get:23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get:24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get:25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB]
Get:26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get:27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get:28 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:29 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:30 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0048 [42.0 kB]
Get:31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get:32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get:33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB]
Get:36 http://deb.debian.org/debian unstable/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB]
Get:37 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:38 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB]
Get:39 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get:40 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get:41 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:42 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:43 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB]
Get:44 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get:45 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get:46 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB]
Get:47 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB]
Get:48 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get:49 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB]
Get:50 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB]
Get:51 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB]
Get:52 http://deb.debian.org/debian unstable/main amd64 bioperl all 1.7.8-1 [246 kB]
Get:53 http://deb.debian.org/debian unstable/main amd64 cd-hit amd64 4.8.1-4 [522 kB]
Get:54 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get:55 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-2 [539 kB]
Get:56 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:57 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:58 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB]
Get:59 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B]
Get:60 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get:61 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:62 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get:63 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get:64 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get:65 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:66 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:67 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB]
Get:68 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get:69 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:70 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:71 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get:72 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB]
Get:73 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB]
Get:74 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get:75 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:76 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get:77 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:78 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:79 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB]
Get:80 http://deb.debian.org/debian unstable/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB]
Get:81 http://deb.debian.org/debian unstable/main amd64 libparams-validate-perl amd64 1.31-2+b3 [63.4 kB]
Get:82 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:83 http://deb.debian.org/debian unstable/main amd64 libgetopt-long-descriptive-perl all 0.116-2 [27.7 kB]
Get:84 http://deb.debian.org/debian unstable/main amd64 libio-tiecombine-perl all 1.005-3 [10.8 kB]
Get:85 http://deb.debian.org/debian unstable/main amd64 libmodule-pluggable-perl all 5.2-5 [23.0 kB]
Get:86 http://deb.debian.org/debian unstable/main amd64 libstring-rewriteprefix-perl all 0.009-1 [7140 B]
Get:87 http://deb.debian.org/debian unstable/main amd64 libapp-cmd-perl all 0.337-2 [61.4 kB]
Get:88 http://deb.debian.org/debian unstable/main amd64 libscope-guard-perl all 0.21-2 [8212 B]
Get:89 http://deb.debian.org/debian unstable/main amd64 libautobox-perl amd64 3.0.2-1+b1 [33.0 kB]
Get:90 http://deb.debian.org/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB]
Get:91 http://deb.debian.org/debian unstable/main amd64 libmixin-linewise-perl all 0.111-1 [14.4 kB]
Get:92 http://deb.debian.org/debian unstable/main amd64 libconfig-ini-perl all 1:0.029-1 [23.7 kB]
Get:93 http://deb.debian.org/debian unstable/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB]
Get:94 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:95 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:96 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:97 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB]
Get:98 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB]
Get:99 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:100 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB]
Get:101 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:102 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:103 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:104 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB]
Get:105 http://deb.debian.org/debian unstable/main amd64 libmoose-perl amd64 2.2207-1+b3 [766 kB]
Get:106 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get:107 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB]
Get:108 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get:109 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB]
Get:110 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:111 http://deb.debian.org/debian unstable/main amd64 libnamespace-autoclean-perl all 0.31-1 [13.8 kB]
Get:112 http://deb.debian.org/debian unstable/main amd64 libmoosex-role-parameterized-perl all 1.11-2 [41.9 kB]
Get:113 http://deb.debian.org/debian unstable/main amd64 libmoosex-oneargnew-perl all 0.007-1 [8180 B]
Get:114 http://deb.debian.org/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.39-1 [130 kB]
Get:115 http://deb.debian.org/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB]
Get:116 http://deb.debian.org/debian unstable/main amd64 libstring-formatter-perl all 1.235-1 [22.1 kB]
Get:117 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:118 http://deb.debian.org/debian unstable/main amd64 libstring-errf-perl all 0.009-1 [12.9 kB]
Get:119 http://deb.debian.org/debian unstable/main amd64 librole-hasmessage-perl all 0.007-1 [9112 B]
Get:120 http://deb.debian.org/debian unstable/main amd64 librole-identifiable-perl all 0.009-1 [10.4 kB]
Get:121 http://deb.debian.org/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:122 http://deb.debian.org/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:123 http://deb.debian.org/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:124 http://deb.debian.org/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get:125 http://deb.debian.org/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:126 http://deb.debian.org/debian unstable/main amd64 libthrowable-perl all 1.001-2 [15.7 kB]
Get:127 http://deb.debian.org/debian unstable/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB]
Get:128 http://deb.debian.org/debian unstable/main amd64 libconfig-mvp-perl all 2.200013-1 [47.1 kB]
Get:129 http://deb.debian.org/debian unstable/main amd64 libconfig-mvp-reader-ini-perl all 2.101465-1 [6900 B]
Get:130 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get:131 http://deb.debian.org/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB]
Get:132 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB]
Get:133 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB]
Get:134 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB]
Get:135 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:136 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:137 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:138 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get:139 http://deb.debian.org/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB]
Get:140 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:141 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get:142 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:143 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:144 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB]
Get:145 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:146 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:147 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:148 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB]
Get:149 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get:150 http://deb.debian.org/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB]
Get:151 http://deb.debian.org/debian unstable/main amd64 libcpan-uploader-perl all 0.103018-1 [16.3 kB]
Get:152 http://deb.debian.org/debian unstable/main amd64 libdata-section-perl all 0.200008-1 [13.1 kB]
Get:153 http://deb.debian.org/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get:154 http://deb.debian.org/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get:155 http://deb.debian.org/debian unstable/main amd64 libparams-validationcompiler-perl all 0.31-1 [30.9 kB]
Get:156 http://deb.debian.org/debian unstable/main amd64 libxstring-perl amd64 0.005-2+b4 [8076 B]
Get:157 http://deb.debian.org/debian unstable/main amd64 libspecio-perl all 0.49-1 [132 kB]
Get:158 http://deb.debian.org/debian unstable/main amd64 libdatetime-locale-perl all 1:1.41-1 [3131 kB]
Get:159 http://deb.debian.org/debian unstable/main amd64 libclass-singleton-perl all 1.6-2 [12.5 kB]
Get:160 http://deb.debian.org/debian unstable/main amd64 libdatetime-timezone-perl all 1:2.64-1+2025a [261 kB]
Get:161 http://deb.debian.org/debian unstable/main amd64 libdatetime-perl amd64 2:1.65-1+b2 [116 kB]
Get:162 http://deb.debian.org/debian unstable/main amd64 libfile-copy-recursive-perl all 0.45-4 [20.0 kB]
Get:163 http://deb.debian.org/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get:164 http://deb.debian.org/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get:165 http://deb.debian.org/debian unstable/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB]
Get:166 http://deb.debian.org/debian unstable/main amd64 libfile-pushd-perl all 1.016-2 [13.5 kB]
Get:167 http://deb.debian.org/debian unstable/main amd64 libfile-sharedir-install-perl all 0.14-2 [11.6 kB]
Get:168 http://deb.debian.org/debian unstable/main amd64 libhash-merge-simple-perl all 0.052-1 [8232 B]
Get:169 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB]
Get:170 http://deb.debian.org/debian unstable/main amd64 liblog-dispatch-perl all 2.71-1 [75.8 kB]
Get:171 http://deb.debian.org/debian unstable/main amd64 liblog-dispatch-array-perl all 1.005-1 [6700 B]
Get:172 http://deb.debian.org/debian unstable/main amd64 libstring-flogger-perl all 1.101246-1 [7380 B]
Get:173 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-globexporter-perl all 0.006-1 [8024 B]
Get:174 http://deb.debian.org/debian unstable/main amd64 liblog-dispatchouli-perl all 3.008-1 [34.4 kB]
Get:175 http://deb.debian.org/debian unstable/main amd64 libexporter-tiny-perl all 1.006002-1 [38.7 kB]
Get:176 http://deb.debian.org/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-4+b2 [42.1 kB]
Get:177 http://deb.debian.org/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB]
Get:178 http://deb.debian.org/debian unstable/main amd64 libsyntax-keyword-junction-perl all 0.003009-1 [12.7 kB]
Get:179 http://deb.debian.org/debian unstable/main amd64 libmoose-autobox-perl all 0.16-2 [52.8 kB]
Get:180 http://deb.debian.org/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:181 http://deb.debian.org/debian unstable/main amd64 libmoosex-lazyrequire-perl all 0.11-2 [9212 B]
Get:182 http://deb.debian.org/debian unstable/main amd64 libmoosex-setonce-perl all 0.200002-2 [6632 B]
Get:183 http://deb.debian.org/debian unstable/main amd64 libcarp-clan-perl all 6.08-2 [14.1 kB]
Get:184 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-formethods-perl all 0.100055-1 [8024 B]
Get:185 http://deb.debian.org/debian unstable/main amd64 libmoosex-types-perl all 0.50-2 [54.6 kB]
Get:186 http://deb.debian.org/debian unstable/main amd64 libmoosex-types-perl-perl all 0.101344-1 [8160 B]
Get:187 http://deb.debian.org/debian unstable/main amd64 libpath-tiny-perl all 0.146-1 [56.2 kB]
Get:188 http://deb.debian.org/debian unstable/main amd64 libmodule-path-perl all 0.19-3 [12.3 kB]
Get:189 http://deb.debian.org/debian unstable/main amd64 libsafe-isa-perl all 1.000010-1 [8288 B]
Get:190 http://deb.debian.org/debian unstable/main amd64 libtask-weaken-perl all 1.06-2 [9364 B]
Get:191 http://deb.debian.org/debian unstable/main amd64 libyaml-pp-perl all 0.38.0-1 [109 kB]
Get:192 http://deb.debian.org/debian unstable/main amd64 libppi-perl all 1.281-1 [299 kB]
Get:193 http://deb.debian.org/debian unstable/main amd64 libtype-tiny-perl all 2.004000-1 [357 kB]
Get:194 http://deb.debian.org/debian unstable/main amd64 libperl-prereqscanner-perl all 1.100-1 [31.0 kB]
Get:195 http://deb.debian.org/debian unstable/main amd64 libperl-version-perl all 1.017-1 [29.0 kB]
Get:196 http://deb.debian.org/debian unstable/main amd64 libtext-template-perl all 1.61-1 [54.4 kB]
Get:197 http://deb.debian.org/debian unstable/main amd64 libsoftware-license-perl all 0.104006-1 [116 kB]
Get:198 http://deb.debian.org/debian unstable/main amd64 libterm-encoding-perl all 0.03-2 [4980 B]
Get:199 http://deb.debian.org/debian unstable/main amd64 libyaml-tiny-perl all 1.76-1 [29.8 kB]
Get:200 http://deb.debian.org/debian unstable/main amd64 libdist-zilla-perl all 6.032-1 [343 kB]
Get:201 http://deb.debian.org/debian unstable/main amd64 dh-dist-zilla all 1.4.1 [17.9 kB]
Get:202 http://deb.debian.org/debian unstable/main amd64 fasttree amd64 2.1.11-2 [181 kB]
Get:203 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get:204 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.45-1 [281 kB]
Get:205 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get:206 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:207 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:208 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB]
Get:209 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB]
Get:210 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2 [463 kB]
Get:211 http://deb.debian.org/debian unstable/main amd64 libarray-utils-perl all 0.5-3 [6184 B]
Get:212 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB]
Get:213 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get:214 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get:215 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get:216 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get:217 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get:218 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get:219 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get:220 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get:221 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get:222 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b3 [27.8 kB]
Get:223 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB]
Get:224 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get:225 http://deb.debian.org/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:226 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get:227 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get:228 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get:229 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get:230 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get:231 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get:232 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:233 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get:234 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:235 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.1-1+b1 [352 kB]
Get:236 http://deb.debian.org/debian unstable/main amd64 libdata-compare-perl all 1.29-1 [19.6 kB]
Get:237 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get:238 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get:239 http://deb.debian.org/debian unstable/main amd64 libpod-eventual-perl all 0.094003-1 [14.2 kB]
Get:240 http://deb.debian.org/debian unstable/main amd64 libstring-truncate-perl all 1.100603-1 [10.2 kB]
Get:241 http://deb.debian.org/debian unstable/main amd64 libpod-elemental-perl all 0.103006-1 [67.2 kB]
Get:242 http://deb.debian.org/debian unstable/main amd64 libpod-elemental-perlmunger-perl all 0.200007-1 [10.5 kB]
Get:243 http://deb.debian.org/debian unstable/main amd64 libpod-weaver-perl all 4.020-1 [70.1 kB]
Get:244 http://deb.debian.org/debian unstable/main amd64 libdist-zilla-plugin-podweaver-perl all 4.010-1 [9580 B]
Get:245 http://deb.debian.org/debian unstable/main amd64 libenv-path-perl all 0.19-4 [19.1 kB]
Get:246 http://deb.debian.org/debian unstable/main amd64 libfile-chdir-perl all 0.1008-1.2 [11.9 kB]
Get:247 http://deb.debian.org/debian unstable/main amd64 libfile-grep-perl all 0.02-3 [8352 B]
Get:248 http://deb.debian.org/debian unstable/main amd64 libfile-slurper-perl all 0.014-1 [8560 B]
Get:249 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get:250 http://deb.debian.org/debian unstable/main amd64 libfindbin-libs-perl all 3.0.2-1 [29.7 kB]
Get:251 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get:252 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-14 [837 kB]
Get:253 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.4-2 [1502 kB]
Get:254 http://deb.debian.org/debian unstable/main amd64 libheap-perl all 0.80-5 [34.3 kB]
Get:255 http://deb.debian.org/debian unstable/main amd64 libset-object-perl amd64 1.42-1+b5 [37.6 kB]
Get:256 http://deb.debian.org/debian unstable/main amd64 libgraph-perl all 1:0.9729-1 [108 kB]
Get:257 http://deb.debian.org/debian unstable/main amd64 libspiffy-perl all 0.46-1 [25.7 kB]
Get:258 http://deb.debian.org/debian unstable/main amd64 libio-all-perl all 0.87-2 [67.3 kB]
Get:259 http://deb.debian.org/debian unstable/main amd64 libparse-yapp-perl all 1.21-4 [41.5 kB]
Get:260 http://deb.debian.org/debian unstable/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB]
Get:261 http://deb.debian.org/debian unstable/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB]
Get:262 http://deb.debian.org/debian unstable/main amd64 libgraph-readwrite-perl all 2.10-1 [45.2 kB]
Get:263 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get:264 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB]
Get:265 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.2 [216 kB]
Get:266 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get:267 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get:268 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB]
Get:269 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB]
Get:270 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get:271 http://deb.debian.org/debian unstable/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB]
Get:272 http://deb.debian.org/debian unstable/main amd64 liblog-log4perl-perl all 1.57-1 [367 kB]
Get:273 http://deb.debian.org/debian unstable/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB]
Get:274 http://deb.debian.org/debian unstable/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB]
Get:275 http://deb.debian.org/debian unstable/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB]
Get:276 http://deb.debian.org/debian unstable/main amd64 libpadwalker-perl amd64 2.5-1+b6 [18.6 kB]
Get:277 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get:278 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get:279 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.56.1-1 [226 kB]
Get:280 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [55.3 kB]
Get:281 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [35.8 kB]
Get:282 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3 [16.3 kB]
Get:283 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3 [16.1 kB]
Get:284 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get:285 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB]
Get:286 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get:287 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB]
Get:288 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB]
Get:289 http://deb.debian.org/debian unstable/main amd64 libtest-file-perl all 1.994-1 [24.8 kB]
Get:290 http://deb.debian.org/debian unstable/main amd64 libtest2-suite-perl all 0.000163-1 [383 kB]
Get:291 http://deb.debian.org/debian unstable/main amd64 libtest-files-perl all 0.26-1 [21.6 kB]
Get:292 http://deb.debian.org/debian unstable/main amd64 libtest-output-perl all 1.035-1 [16.4 kB]
Get:293 http://deb.debian.org/debian unstable/main amd64 libtext-csv-perl all 2.05-1 [115 kB]
Get:294 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get:295 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB]
Get:296 http://deb.debian.org/debian unstable/main amd64 libtingea0 amd64 21-361-2+b2 [52.1 kB]
Get:297 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:298 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get:299 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b3 [54.6 kB]
Get:300 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB]
Get:301 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB]
Get:302 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB]
Get:303 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB]
Get:304 http://deb.debian.org/debian unstable/main amd64 mafft amd64 7.505-1 [1078 kB]
Get:305 http://deb.debian.org/debian unstable/main amd64 mcl amd64 1:22-282+ds-3 [478 kB]
Get:306 http://deb.debian.org/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB]
Get:307 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB]
Get:308 http://deb.debian.org/debian unstable/main amd64 sysstat amd64 12.7.5-2 [623 kB]
Get:309 http://deb.debian.org/debian unstable/main amd64 parallel all 20240222+ds-2 [2163 kB]
Get:310 http://deb.debian.org/debian unstable/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB]
Get:311 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-14 [233 kB]
Get:312 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB]
Get:313 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get:314 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB]
Preconfiguring packages ...
Fetched 116 MB in 1s (119 MB/s)
Selecting previously unselected package libpython3.13-minimal:amd64.
(Reading database ... 23043 files and directories currently installed.)
Preparing to unpack .../libpython3.13-minimal_3.13.1-3_amd64.deb ...
Unpacking libpython3.13-minimal:amd64 (3.13.1-3) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.6.4-1) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../python3.13-minimal_3.13.1-3_amd64.deb ...
Unpacking python3.13-minimal (3.13.1-3) ...
Setting up libpython3.13-minimal:amd64 (3.13.1-3) ...
Setting up libexpat1:amd64 (2.6.4-1) ...
Setting up python3.13-minimal (3.13.1-3) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 23377 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ...
Unpacking python3-minimal (3.13.1-2) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../2-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../3-tzdata_2025a-1_all.deb ...
Unpacking tzdata (2025a-1) ...
Selecting previously unselected package libpython3.13-stdlib:amd64.
Preparing to unpack .../4-libpython3.13-stdlib_3.13.1-3_amd64.deb ...
Unpacking libpython3.13-stdlib:amd64 (3.13.1-3) ...
Selecting previously unselected package python3.13.
Preparing to unpack .../5-python3.13_3.13.1-3_amd64.deb ...
Unpacking python3.13 (3.13.1-3) ...
Selecting previously unselected package libpython3-stdlib:amd64.
Preparing to unpack .../6-libpython3-stdlib_3.13.1-2_amd64.deb ...
Unpacking libpython3-stdlib:amd64 (3.13.1-2) ...
Setting up python3-minimal (3.13.1-2) ...
Selecting previously unselected package python3.
(Reading database ... 24350 files and directories currently installed.)
Preparing to unpack .../000-python3_3.13.1-2_amd64.deb ...
Unpacking python3 (3.13.1-2) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../001-libproc2-0_2%3a4.0.4-6_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-6) ...
Selecting previously unselected package procps.
Preparing to unpack .../002-procps_2%3a4.0.4-6_amd64.deb ...
Unpacking procps (2:4.0.4-6) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package openssl.
Preparing to unpack .../004-openssl_3.4.0-2_amd64.deb ...
Unpacking openssl (3.4.0-2) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../005-ca-certificates_20241223_all.deb ...
Unpacking ca-certificates (20241223) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../007-libmagic1t64_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../008-file_1%3a5.45-3+b1_amd64.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../009-gettext-base_0.23.1-1_amd64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../010-libuchardet0_0.0.8-1+b2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../011-groff-base_1.23.0-7_amd64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../012-bsdextrautils_2.40.4-1_amd64.deb ...
Unpacking bsdextrautils (2.40.4-1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../013-libpipeline1_1.5.8-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../014-man-db_2.13.0-1_amd64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package libtext-charwidth-perl:amd64.
Preparing to unpack .../015-libtext-charwidth-perl_0.04-11+b4_amd64.deb ...
Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../016-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../017-ucf_3.0048_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0048) ...
Selecting previously unselected package m4.
Preparing to unpack .../018-m4_1.4.19-5_amd64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../019-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../021-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../022-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package bedtools.
Preparing to unpack .../023-bedtools_2.31.1+dfsg-2_amd64.deb ...
Unpacking bedtools (2.31.1+dfsg-2) ...
Selecting previously unselected package libio-string-perl.
Preparing to unpack .../024-libio-string-perl_1.08-4_all.deb ...
Unpacking libio-string-perl (1.08-4) ...
Selecting previously unselected package libdata-stag-perl.
Preparing to unpack .../025-libdata-stag-perl_0.14-3_all.deb ...
Unpacking libdata-stag-perl (0.14-3) ...
Selecting previously unselected package libbio-perl-perl.
Preparing to unpack .../026-libbio-perl-perl_1.7.8-1_all.deb ...
Unpacking libbio-perl-perl (1.7.8-1) ...
Selecting previously unselected package libclass-data-inheritable-perl.
Preparing to unpack .../027-libclass-data-inheritable-perl_0.10-1_all.deb ...
Unpacking libclass-data-inheritable-perl (0.10-1) ...
Selecting previously unselected package libdevel-stacktrace-perl.
Preparing to unpack .../028-libdevel-stacktrace-perl_2.0500-1_all.deb ...
Unpacking libdevel-stacktrace-perl (2.0500-1) ...
Selecting previously unselected package libexception-class-perl.
Preparing to unpack .../029-libexception-class-perl_1.45-1_all.deb ...
Unpacking libexception-class-perl (1.45-1) ...
Selecting previously unselected package libtest-deep-perl.
Preparing to unpack .../030-libtest-deep-perl_1.204-1_all.deb ...
Unpacking libtest-deep-perl (1.204-1) ...
Selecting previously unselected package libcapture-tiny-perl.
Preparing to unpack .../031-libcapture-tiny-perl_0.48-2_all.deb ...
Unpacking libcapture-tiny-perl (0.48-2) ...
Selecting previously unselected package libalgorithm-diff-perl.
Preparing to unpack .../032-libalgorithm-diff-perl_1.201-1_all.deb ...
Unpacking libalgorithm-diff-perl (1.201-1) ...
Selecting previously unselected package libtext-diff-perl.
Preparing to unpack .../033-libtext-diff-perl_1.45-2_all.deb ...
Unpacking libtext-diff-perl (1.45-2) ...
Selecting previously unselected package libtest-differences-perl.
Preparing to unpack .../034-libtest-differences-perl_0.71-1_all.deb ...
Unpacking libtest-differences-perl (0.71-1) ...
Selecting previously unselected package libsub-uplevel-perl.
Preparing to unpack .../035-libsub-uplevel-perl_0.2800-3_all.deb ...
Unpacking libsub-uplevel-perl (0.2800-3) ...
Selecting previously unselected package libtest-exception-perl.
Preparing to unpack .../036-libtest-exception-perl_0.43-3_all.deb ...
Unpacking libtest-exception-perl (0.43-3) ...
Selecting previously unselected package libtest-warn-perl.
Preparing to unpack .../037-libtest-warn-perl_0.37-2_all.deb ...
Unpacking libtest-warn-perl (0.37-2) ...
Selecting previously unselected package libtest-most-perl.
Preparing to unpack .../038-libtest-most-perl_0.38-1_all.deb ...
Unpacking libtest-most-perl (0.38-1) ...
Selecting previously unselected package bioperl.
Preparing to unpack .../039-bioperl_1.7.8-1_all.deb ...
Unpacking bioperl (1.7.8-1) ...
Selecting previously unselected package cd-hit.
Preparing to unpack .../040-cd-hit_4.8.1-4_amd64.deb ...
Unpacking cd-hit (4.8.1-4) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../041-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../042-libtool_2.5.4-2_all.deb ...
Unpacking libtool (2.5.4-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../043-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../044-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../045-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../046-dh-strip-nondeterminism_1.14.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.1-1) ...
Selecting previously unselected package libelf1t64:amd64.
Preparing to unpack .../047-libelf1t64_0.192-4_amd64.deb ...
Unpacking libelf1t64:amd64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../048-dwz_0.15-1+b1_amd64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../049-libicu72_72.1-6_amd64.deb ...
Unpacking libicu72:amd64 (72.1-6) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../050-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ...
Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../051-gettext_0.23.1-1_amd64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../052-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../053-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../054-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Selecting previously unselected package libparams-util-perl.
Preparing to unpack .../055-libparams-util-perl_1.102-3+b1_amd64.deb ...
Unpacking libparams-util-perl (1.102-3+b1) ...
Selecting previously unselected package libsub-install-perl.
Preparing to unpack .../056-libsub-install-perl_0.929-1_all.deb ...
Unpacking libsub-install-perl (0.929-1) ...
Selecting previously unselected package libdata-optlist-perl.
Preparing to unpack .../057-libdata-optlist-perl_0.114-1_all.deb ...
Unpacking libdata-optlist-perl (0.114-1) ...
Selecting previously unselected package libb-hooks-op-check-perl:amd64.
Preparing to unpack .../058-libb-hooks-op-check-perl_0.22-3+b2_amd64.deb ...
Unpacking libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Selecting previously unselected package libdynaloader-functions-perl.
Preparing to unpack .../059-libdynaloader-functions-perl_0.004-1_all.deb ...
Unpacking libdynaloader-functions-perl (0.004-1) ...
Selecting previously unselected package libdevel-callchecker-perl:amd64.
Preparing to unpack .../060-libdevel-callchecker-perl_0.009-1+b1_amd64.deb ...
Unpacking libdevel-callchecker-perl:amd64 (0.009-1+b1) ...
Selecting previously unselected package libparams-classify-perl:amd64.
Preparing to unpack .../061-libparams-classify-perl_0.015-2+b4_amd64.deb ...
Unpacking libparams-classify-perl:amd64 (0.015-2+b4) ...
Selecting previously unselected package libmodule-runtime-perl.
Preparing to unpack .../062-libmodule-runtime-perl_0.016-2_all.deb ...
Unpacking libmodule-runtime-perl (0.016-2) ...
Selecting previously unselected package libtry-tiny-perl.
Preparing to unpack .../063-libtry-tiny-perl_0.32-1_all.deb ...
Unpacking libtry-tiny-perl (0.32-1) ...
Selecting previously unselected package libmodule-implementation-perl.
Preparing to unpack .../064-libmodule-implementation-perl_0.09-2_all.deb ...
Unpacking libmodule-implementation-perl (0.09-2) ...
Selecting previously unselected package libpackage-stash-perl.
Preparing to unpack .../065-libpackage-stash-perl_0.40-1_all.deb ...
Unpacking libpackage-stash-perl (0.40-1) ...
Selecting previously unselected package libclass-load-perl.
Preparing to unpack .../066-libclass-load-perl_0.25-2_all.deb ...
Unpacking libclass-load-perl (0.25-2) ...
Selecting previously unselected package libio-stringy-perl.
Preparing to unpack .../067-libio-stringy-perl_2.113-2_all.deb ...
Unpacking libio-stringy-perl (2.113-2) ...
Selecting previously unselected package libparams-validate-perl:amd64.
Preparing to unpack .../068-libparams-validate-perl_1.31-2+b3_amd64.deb ...
Unpacking libparams-validate-perl:amd64 (1.31-2+b3) ...
Selecting previously unselected package libsub-exporter-perl.
Preparing to unpack .../069-libsub-exporter-perl_0.990-1_all.deb ...
Unpacking libsub-exporter-perl (0.990-1) ...
Selecting previously unselected package libgetopt-long-descriptive-perl.
Preparing to unpack .../070-libgetopt-long-descriptive-perl_0.116-2_all.deb ...
Unpacking libgetopt-long-descriptive-perl (0.116-2) ...
Selecting previously unselected package libio-tiecombine-perl.
Preparing to unpack .../071-libio-tiecombine-perl_1.005-3_all.deb ...
Unpacking libio-tiecombine-perl (1.005-3) ...
Selecting previously unselected package libmodule-pluggable-perl.
Preparing to unpack .../072-libmodule-pluggable-perl_5.2-5_all.deb ...
Unpacking libmodule-pluggable-perl (5.2-5) ...
Selecting previously unselected package libstring-rewriteprefix-perl.
Preparing to unpack .../073-libstring-rewriteprefix-perl_0.009-1_all.deb ...
Unpacking libstring-rewriteprefix-perl (0.009-1) ...
Selecting previously unselected package libapp-cmd-perl.
Preparing to unpack .../074-libapp-cmd-perl_0.337-2_all.deb ...
Unpacking libapp-cmd-perl (0.337-2) ...
Selecting previously unselected package libscope-guard-perl.
Preparing to unpack .../075-libscope-guard-perl_0.21-2_all.deb ...
Unpacking libscope-guard-perl (0.21-2) ...
Selecting previously unselected package libautobox-perl.
Preparing to unpack .../076-libautobox-perl_3.0.2-1+b1_amd64.deb ...
Unpacking libautobox-perl (3.0.2-1+b1) ...
Selecting previously unselected package libperlio-utf8-strict-perl.
Preparing to unpack .../077-libperlio-utf8-strict-perl_0.010-1+b3_amd64.deb ...
Unpacking libperlio-utf8-strict-perl (0.010-1+b3) ...
Selecting previously unselected package libmixin-linewise-perl.
Preparing to unpack .../078-libmixin-linewise-perl_0.111-1_all.deb ...
Unpacking libmixin-linewise-perl (0.111-1) ...
Selecting previously unselected package libconfig-ini-perl.
Preparing to unpack .../079-libconfig-ini-perl_1%3a0.029-1_all.deb ...
Unpacking libconfig-ini-perl (1:0.029-1) ...
Selecting previously unselected package libclass-load-xs-perl.
Preparing to unpack .../080-libclass-load-xs-perl_0.10-2+b4_amd64.deb ...
Unpacking libclass-load-xs-perl (0.10-2+b4) ...
Selecting previously unselected package libsub-exporter-progressive-perl.
Preparing to unpack .../081-libsub-exporter-progressive-perl_0.001013-3_all.deb ...
Unpacking libsub-exporter-progressive-perl (0.001013-3) ...
Selecting previously unselected package libdevel-globaldestruction-perl.
Preparing to unpack .../082-libdevel-globaldestruction-perl_0.14-4_all.deb ...
Unpacking libdevel-globaldestruction-perl (0.14-4) ...
Selecting previously unselected package libalgorithm-c3-perl.
Preparing to unpack .../083-libalgorithm-c3-perl_0.11-2_all.deb ...
Unpacking libalgorithm-c3-perl (0.11-2) ...
Selecting previously unselected package libclass-c3-perl.
Preparing to unpack .../084-libclass-c3-perl_0.35-2_all.deb ...
Unpacking libclass-c3-perl (0.35-2) ...
Selecting previously unselected package libmro-compat-perl.
Preparing to unpack .../085-libmro-compat-perl_0.15-2_all.deb ...
Unpacking libmro-compat-perl (0.15-2) ...
Selecting previously unselected package libdevel-overloadinfo-perl.
Preparing to unpack .../086-libdevel-overloadinfo-perl_0.007-1_all.deb ...
Unpacking libdevel-overloadinfo-perl (0.007-1) ...
Selecting previously unselected package libeval-closure-perl.
Preparing to unpack .../087-libeval-closure-perl_0.14-3_all.deb ...
Unpacking libeval-closure-perl (0.14-3) ...
Selecting previously unselected package libdist-checkconflicts-perl.
Preparing to unpack .../088-libdist-checkconflicts-perl_0.11-2_all.deb ...
Unpacking libdist-checkconflicts-perl (0.11-2) ...
Selecting previously unselected package libmodule-runtime-conflicts-perl.
Preparing to unpack .../089-libmodule-runtime-conflicts-perl_0.003-2_all.deb ...
Unpacking libmodule-runtime-conflicts-perl (0.003-2) ...
Selecting previously unselected package libpackage-deprecationmanager-perl.
Preparing to unpack .../090-libpackage-deprecationmanager-perl_0.18-1_all.deb ...
Unpacking libpackage-deprecationmanager-perl (0.18-1) ...
Selecting previously unselected package libpackage-stash-xs-perl:amd64.
Preparing to unpack .../091-libpackage-stash-xs-perl_0.30-1+b4_amd64.deb ...
Unpacking libpackage-stash-xs-perl:amd64 (0.30-1+b4) ...
Selecting previously unselected package libmoose-perl:amd64.
Preparing to unpack .../092-libmoose-perl_2.2207-1+b3_amd64.deb ...
Unpacking libmoose-perl:amd64 (2.2207-1+b3) ...
Selecting previously unselected package libvariable-magic-perl.
Preparing to unpack .../093-libvariable-magic-perl_0.64-1+b1_amd64.deb ...
Unpacking libvariable-magic-perl (0.64-1+b1) ...
Selecting previously unselected package libb-hooks-endofscope-perl.
Preparing to unpack .../094-libb-hooks-endofscope-perl_0.28-1_all.deb ...
Unpacking libb-hooks-endofscope-perl (0.28-1) ...
Selecting previously unselected package libsub-identify-perl.
Preparing to unpack .../095-libsub-identify-perl_0.14-3+b3_amd64.deb ...
Unpacking libsub-identify-perl (0.14-3+b3) ...
Selecting previously unselected package libsub-name-perl:amd64.
Preparing to unpack .../096-libsub-name-perl_0.28-1_amd64.deb ...
Unpacking libsub-name-perl:amd64 (0.28-1) ...
Selecting previously unselected package libnamespace-clean-perl.
Preparing to unpack .../097-libnamespace-clean-perl_0.27-2_all.deb ...
Unpacking libnamespace-clean-perl (0.27-2) ...
Selecting previously unselected package libnamespace-autoclean-perl.
Preparing to unpack .../098-libnamespace-autoclean-perl_0.31-1_all.deb ...
Unpacking libnamespace-autoclean-perl (0.31-1) ...
Selecting previously unselected package libmoosex-role-parameterized-perl.
Preparing to unpack .../099-libmoosex-role-parameterized-perl_1.11-2_all.deb ...
Unpacking libmoosex-role-parameterized-perl (1.11-2) ...
Selecting previously unselected package libmoosex-oneargnew-perl.
Preparing to unpack .../100-libmoosex-oneargnew-perl_0.007-1_all.deb ...
Unpacking libmoosex-oneargnew-perl (0.007-1) ...
Selecting previously unselected package libcpanel-json-xs-perl:amd64.
Preparing to unpack .../101-libcpanel-json-xs-perl_4.39-1_amd64.deb ...
Unpacking libcpanel-json-xs-perl:amd64 (4.39-1) ...
Selecting previously unselected package libjson-maybexs-perl.
Preparing to unpack .../102-libjson-maybexs-perl_1.004008-1_all.deb ...
Unpacking libjson-maybexs-perl (1.004008-1) ...
Selecting previously unselected package libstring-formatter-perl.
Preparing to unpack .../103-libstring-formatter-perl_1.235-1_all.deb ...
Unpacking libstring-formatter-perl (1.235-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../104-libtimedate-perl_2.3300-2_all.deb ...
Unpacking libtimedate-perl (2.3300-2) ...
Selecting previously unselected package libstring-errf-perl.
Preparing to unpack .../105-libstring-errf-perl_0.009-1_all.deb ...
Unpacking libstring-errf-perl (0.009-1) ...
Selecting previously unselected package librole-hasmessage-perl.
Preparing to unpack .../106-librole-hasmessage-perl_0.007-1_all.deb ...
Unpacking librole-hasmessage-perl (0.007-1) ...
Selecting previously unselected package librole-identifiable-perl.
Preparing to unpack .../107-librole-identifiable-perl_0.009-1_all.deb ...
Unpacking librole-identifiable-perl (0.009-1) ...
Selecting previously unselected package libclass-method-modifiers-perl.
Preparing to unpack .../108-libclass-method-modifiers-perl_2.15-1_all.deb ...
Unpacking libclass-method-modifiers-perl (2.15-1) ...
Selecting previously unselected package libclass-xsaccessor-perl.
Preparing to unpack .../109-libclass-xsaccessor-perl_1.19-4+b5_amd64.deb ...
Unpacking libclass-xsaccessor-perl (1.19-4+b5) ...
Selecting previously unselected package libimport-into-perl.
Preparing to unpack .../110-libimport-into-perl_1.002005-2_all.deb ...
Unpacking libimport-into-perl (1.002005-2) ...
Selecting previously unselected package librole-tiny-perl.
Preparing to unpack .../111-librole-tiny-perl_2.002004-1_all.deb ...
Unpacking librole-tiny-perl (2.002004-1) ...
Selecting previously unselected package libsub-quote-perl.
Preparing to unpack .../112-libsub-quote-perl_2.006008-1_all.deb ...
Unpacking libsub-quote-perl (2.006008-1) ...
Selecting previously unselected package libmoo-perl.
Preparing to unpack .../113-libmoo-perl_2.005005-1_all.deb ...
Unpacking libmoo-perl (2.005005-1) ...
Selecting previously unselected package libthrowable-perl.
Preparing to unpack .../114-libthrowable-perl_1.001-2_all.deb ...
Unpacking libthrowable-perl (1.001-2) ...
Selecting previously unselected package libtie-ixhash-perl.
Preparing to unpack .../115-libtie-ixhash-perl_1.23-4_all.deb ...
Unpacking libtie-ixhash-perl (1.23-4) ...
Selecting previously unselected package libconfig-mvp-perl.
Preparing to unpack .../116-libconfig-mvp-perl_2.200013-1_all.deb ...
Unpacking libconfig-mvp-perl (2.200013-1) ...
Selecting previously unselected package libconfig-mvp-reader-ini-perl.
Preparing to unpack .../117-libconfig-mvp-reader-ini-perl_2.101465-1_all.deb ...
Unpacking libconfig-mvp-reader-ini-perl (2.101465-1) ...
Selecting previously unselected package perl-openssl-defaults:amd64.
Preparing to unpack .../118-perl-openssl-defaults_7+b2_amd64.deb ...
Unpacking perl-openssl-defaults:amd64 (7+b2) ...
Selecting previously unselected package libnet-ssleay-perl:amd64.
Preparing to unpack .../119-libnet-ssleay-perl_1.94-2_amd64.deb ...
Unpacking libnet-ssleay-perl:amd64 (1.94-2) ...
Selecting previously unselected package libio-socket-ssl-perl.
Preparing to unpack .../120-libio-socket-ssl-perl_2.089-1_all.deb ...
Unpacking libio-socket-ssl-perl (2.089-1) ...
Selecting previously unselected package liburi-perl.
Preparing to unpack .../121-liburi-perl_5.30-1_all.deb ...
Unpacking liburi-perl (5.30-1) ...
Selecting previously unselected package libnet-http-perl.
Preparing to unpack .../122-libnet-http-perl_6.23-1_all.deb ...
Unpacking libnet-http-perl (6.23-1) ...
Selecting previously unselected package libencode-locale-perl.
Preparing to unpack .../123-libencode-locale-perl_1.05-3_all.deb ...
Unpacking libencode-locale-perl (1.05-3) ...
Selecting previously unselected package libhttp-date-perl.
Preparing to unpack .../124-libhttp-date-perl_6.06-1_all.deb ...
Unpacking libhttp-date-perl (6.06-1) ...
Selecting previously unselected package libfile-listing-perl.
Preparing to unpack .../125-libfile-listing-perl_6.16-1_all.deb ...
Unpacking libfile-listing-perl (6.16-1) ...
Selecting previously unselected package libhtml-tagset-perl.
Preparing to unpack .../126-libhtml-tagset-perl_3.24-1_all.deb ...
Unpacking libhtml-tagset-perl (3.24-1) ...
Selecting previously unselected package libhtml-parser-perl:amd64.
Preparing to unpack .../127-libhtml-parser-perl_3.83-1+b2_amd64.deb ...
Unpacking libhtml-parser-perl:amd64 (3.83-1+b2) ...
Selecting previously unselected package libhtml-tree-perl.
Preparing to unpack .../128-libhtml-tree-perl_5.07-3_all.deb ...
Unpacking libhtml-tree-perl (5.07-3) ...
Selecting previously unselected package libclone-perl:amd64.
Preparing to unpack .../129-libclone-perl_0.47-1+b1_amd64.deb ...
Unpacking libclone-perl:amd64 (0.47-1+b1) ...
Selecting previously unselected package libio-html-perl.
Preparing to unpack .../130-libio-html-perl_1.004-3_all.deb ...
Unpacking libio-html-perl (1.004-3) ...
Selecting previously unselected package liblwp-mediatypes-perl.
Preparing to unpack .../131-liblwp-mediatypes-perl_6.04-2_all.deb ...
Unpacking liblwp-mediatypes-perl (6.04-2) ...
Selecting previously unselected package libhttp-message-perl.
Preparing to unpack .../132-libhttp-message-perl_7.00-2_all.deb ...
Unpacking libhttp-message-perl (7.00-2) ...
Selecting previously unselected package libhttp-cookies-perl.
Preparing to unpack .../133-libhttp-cookies-perl_6.11-1_all.deb ...
Unpacking libhttp-cookies-perl (6.11-1) ...
Selecting previously unselected package libhttp-negotiate-perl.
Preparing to unpack .../134-libhttp-negotiate-perl_6.01-2_all.deb ...
Unpacking libhttp-negotiate-perl (6.01-2) ...
Selecting previously unselected package libwww-robotrules-perl.
Preparing to unpack .../135-libwww-robotrules-perl_6.02-1_all.deb ...
Unpacking libwww-robotrules-perl (6.02-1) ...
Selecting previously unselected package libwww-perl.
Preparing to unpack .../136-libwww-perl_6.77-1_all.deb ...
Unpacking libwww-perl (6.77-1) ...
Selecting previously unselected package liblwp-protocol-https-perl.
Preparing to unpack .../137-liblwp-protocol-https-perl_6.14-1_all.deb ...
Unpacking liblwp-protocol-https-perl (6.14-1) ...
Selecting previously unselected package libterm-readkey-perl.
Preparing to unpack .../138-libterm-readkey-perl_2.38-2+b4_amd64.deb ...
Unpacking libterm-readkey-perl (2.38-2+b4) ...
Selecting previously unselected package libcpan-uploader-perl.
Preparing to unpack .../139-libcpan-uploader-perl_0.103018-1_all.deb ...
Unpacking libcpan-uploader-perl (0.103018-1) ...
Selecting previously unselected package libdata-section-perl.
Preparing to unpack .../140-libdata-section-perl_0.200008-1_all.deb ...
Unpacking libdata-section-perl (0.200008-1) ...
Selecting previously unselected package libclass-inspector-perl.
Preparing to unpack .../141-libclass-inspector-perl_1.36-3_all.deb ...
Unpacking libclass-inspector-perl (1.36-3) ...
Selecting previously unselected package libfile-sharedir-perl.
Preparing to unpack .../142-libfile-sharedir-perl_1.118-3_all.deb ...
Unpacking libfile-sharedir-perl (1.118-3) ...
Selecting previously unselected package libparams-validationcompiler-perl.
Preparing to unpack .../143-libparams-validationcompiler-perl_0.31-1_all.deb ...
Unpacking libparams-validationcompiler-perl (0.31-1) ...
Selecting previously unselected package libxstring-perl:amd64.
Preparing to unpack .../144-libxstring-perl_0.005-2+b4_amd64.deb ...
Unpacking libxstring-perl:amd64 (0.005-2+b4) ...
Selecting previously unselected package libspecio-perl.
Preparing to unpack .../145-libspecio-perl_0.49-1_all.deb ...
Unpacking libspecio-perl (0.49-1) ...
Selecting previously unselected package libdatetime-locale-perl.
Preparing to unpack .../146-libdatetime-locale-perl_1%3a1.41-1_all.deb ...
Unpacking libdatetime-locale-perl (1:1.41-1) ...
Selecting previously unselected package libclass-singleton-perl.
Preparing to unpack .../147-libclass-singleton-perl_1.6-2_all.deb ...
Unpacking libclass-singleton-perl (1.6-2) ...
Selecting previously unselected package libdatetime-timezone-perl.
Preparing to unpack .../148-libdatetime-timezone-perl_1%3a2.64-1+2025a_all.deb ...
Unpacking libdatetime-timezone-perl (1:2.64-1+2025a) ...
Selecting previously unselected package libdatetime-perl.
Preparing to unpack .../149-libdatetime-perl_2%3a1.65-1+b2_amd64.deb ...
Unpacking libdatetime-perl (2:1.65-1+b2) ...
Selecting previously unselected package libfile-copy-recursive-perl.
Preparing to unpack .../150-libfile-copy-recursive-perl_0.45-4_all.deb ...
Unpacking libfile-copy-recursive-perl (0.45-4) ...
Selecting previously unselected package libnumber-compare-perl.
Preparing to unpack .../151-libnumber-compare-perl_0.03-3_all.deb ...
Unpacking libnumber-compare-perl (0.03-3) ...
Selecting previously unselected package libtext-glob-perl.
Preparing to unpack .../152-libtext-glob-perl_0.11-3_all.deb ...
Unpacking libtext-glob-perl (0.11-3) ...
Selecting previously unselected package libfile-find-rule-perl.
Preparing to unpack .../153-libfile-find-rule-perl_0.34-3_all.deb ...
Unpacking libfile-find-rule-perl (0.34-3) ...
Selecting previously unselected package libfile-pushd-perl.
Preparing to unpack .../154-libfile-pushd-perl_1.016-2_all.deb ...
Unpacking libfile-pushd-perl (1.016-2) ...
Selecting previously unselected package libfile-sharedir-install-perl.
Preparing to unpack .../155-libfile-sharedir-install-perl_0.14-2_all.deb ...
Unpacking libfile-sharedir-install-perl (0.14-2) ...
Selecting previously unselected package libhash-merge-simple-perl.
Preparing to unpack .../156-libhash-merge-simple-perl_0.052-1_all.deb ...
Unpacking libhash-merge-simple-perl (0.052-1) ...
Selecting previously unselected package libjson-perl.
Preparing to unpack .../157-libjson-perl_4.10000-1_all.deb ...
Unpacking libjson-perl (4.10000-1) ...
Selecting previously unselected package liblog-dispatch-perl.
Preparing to unpack .../158-liblog-dispatch-perl_2.71-1_all.deb ...
Unpacking liblog-dispatch-perl (2.71-1) ...
Selecting previously unselected package liblog-dispatch-array-perl.
Preparing to unpack .../159-liblog-dispatch-array-perl_1.005-1_all.deb ...
Unpacking liblog-dispatch-array-perl (1.005-1) ...
Selecting previously unselected package libstring-flogger-perl.
Preparing to unpack .../160-libstring-flogger-perl_1.101246-1_all.deb ...
Unpacking libstring-flogger-perl (1.101246-1) ...
Selecting previously unselected package libsub-exporter-globexporter-perl.
Preparing to unpack .../161-libsub-exporter-globexporter-perl_0.006-1_all.deb ...
Unpacking libsub-exporter-globexporter-perl (0.006-1) ...
Selecting previously unselected package liblog-dispatchouli-perl.
Preparing to unpack .../162-liblog-dispatchouli-perl_3.008-1_all.deb ...
Unpacking liblog-dispatchouli-perl (3.008-1) ...
Selecting previously unselected package libexporter-tiny-perl.
Preparing to unpack .../163-libexporter-tiny-perl_1.006002-1_all.deb ...
Unpacking libexporter-tiny-perl (1.006002-1) ...
Selecting previously unselected package liblist-moreutils-xs-perl.
Preparing to unpack .../164-liblist-moreutils-xs-perl_0.430-4+b2_amd64.deb ...
Unpacking liblist-moreutils-xs-perl (0.430-4+b2) ...
Selecting previously unselected package liblist-moreutils-perl.
Preparing to unpack .../165-liblist-moreutils-perl_0.430-2_all.deb ...
Unpacking liblist-moreutils-perl (0.430-2) ...
Selecting previously unselected package libsyntax-keyword-junction-perl.
Preparing to unpack .../166-libsyntax-keyword-junction-perl_0.003009-1_all.deb ...
Unpacking libsyntax-keyword-junction-perl (0.003009-1) ...
Selecting previously unselected package libmoose-autobox-perl.
Preparing to unpack .../167-libmoose-autobox-perl_0.16-2_all.deb ...
Unpacking libmoose-autobox-perl (0.16-2) ...
Selecting previously unselected package libaliased-perl.
Preparing to unpack .../168-libaliased-perl_0.34-3_all.deb ...
Unpacking libaliased-perl (0.34-3) ...
Selecting previously unselected package libmoosex-lazyrequire-perl.
Preparing to unpack .../169-libmoosex-lazyrequire-perl_0.11-2_all.deb ...
Unpacking libmoosex-lazyrequire-perl (0.11-2) ...
Selecting previously unselected package libmoosex-setonce-perl.
Preparing to unpack .../170-libmoosex-setonce-perl_0.200002-2_all.deb ...
Unpacking libmoosex-setonce-perl (0.200002-2) ...
Selecting previously unselected package libcarp-clan-perl.
Preparing to unpack .../171-libcarp-clan-perl_6.08-2_all.deb ...
Unpacking libcarp-clan-perl (6.08-2) ...
Selecting previously unselected package libsub-exporter-formethods-perl.
Preparing to unpack .../172-libsub-exporter-formethods-perl_0.100055-1_all.deb ...
Unpacking libsub-exporter-formethods-perl (0.100055-1) ...
Selecting previously unselected package libmoosex-types-perl.
Preparing to unpack .../173-libmoosex-types-perl_0.50-2_all.deb ...
Unpacking libmoosex-types-perl (0.50-2) ...
Selecting previously unselected package libmoosex-types-perl-perl.
Preparing to unpack .../174-libmoosex-types-perl-perl_0.101344-1_all.deb ...
Unpacking libmoosex-types-perl-perl (0.101344-1) ...
Selecting previously unselected package libpath-tiny-perl.
Preparing to unpack .../175-libpath-tiny-perl_0.146-1_all.deb ...
Unpacking libpath-tiny-perl (0.146-1) ...
Selecting previously unselected package libmodule-path-perl.
Preparing to unpack .../176-libmodule-path-perl_0.19-3_all.deb ...
Unpacking libmodule-path-perl (0.19-3) ...
Selecting previously unselected package libsafe-isa-perl.
Preparing to unpack .../177-libsafe-isa-perl_1.000010-1_all.deb ...
Unpacking libsafe-isa-perl (1.000010-1) ...
Selecting previously unselected package libtask-weaken-perl.
Preparing to unpack .../178-libtask-weaken-perl_1.06-2_all.deb ...
Unpacking libtask-weaken-perl (1.06-2) ...
Selecting previously unselected package libyaml-pp-perl.
Preparing to unpack .../179-libyaml-pp-perl_0.38.0-1_all.deb ...
Unpacking libyaml-pp-perl (0.38.0-1) ...
Selecting previously unselected package libppi-perl.
Preparing to unpack .../180-libppi-perl_1.281-1_all.deb ...
Unpacking libppi-perl (1.281-1) ...
Selecting previously unselected package libtype-tiny-perl.
Preparing to unpack .../181-libtype-tiny-perl_2.004000-1_all.deb ...
Unpacking libtype-tiny-perl (2.004000-1) ...
Selecting previously unselected package libperl-prereqscanner-perl.
Preparing to unpack .../182-libperl-prereqscanner-perl_1.100-1_all.deb ...
Unpacking libperl-prereqscanner-perl (1.100-1) ...
Selecting previously unselected package libperl-version-perl.
Preparing to unpack .../183-libperl-version-perl_1.017-1_all.deb ...
Unpacking libperl-version-perl (1.017-1) ...
Selecting previously unselected package libtext-template-perl.
Preparing to unpack .../184-libtext-template-perl_1.61-1_all.deb ...
Unpacking libtext-template-perl (1.61-1) ...
Selecting previously unselected package libsoftware-license-perl.
Preparing to unpack .../185-libsoftware-license-perl_0.104006-1_all.deb ...
Unpacking libsoftware-license-perl (0.104006-1) ...
Selecting previously unselected package libterm-encoding-perl.
Preparing to unpack .../186-libterm-encoding-perl_0.03-2_all.deb ...
Unpacking libterm-encoding-perl (0.03-2) ...
Selecting previously unselected package libyaml-tiny-perl.
Preparing to unpack .../187-libyaml-tiny-perl_1.76-1_all.deb ...
Unpacking libyaml-tiny-perl (1.76-1) ...
Selecting previously unselected package libdist-zilla-perl.
Preparing to unpack .../188-libdist-zilla-perl_6.032-1_all.deb ...
Unpacking libdist-zilla-perl (6.032-1) ...
Selecting previously unselected package dh-dist-zilla.
Preparing to unpack .../189-dh-dist-zilla_1.4.1_all.deb ...
Unpacking dh-dist-zilla (1.4.1) ...
Selecting previously unselected package fasttree.
Preparing to unpack .../190-fasttree_2.1.11-2_amd64.deb ...
Unpacking fasttree (2.1.11-2) ...
Selecting previously unselected package libbrotli1:amd64.
Preparing to unpack .../191-libbrotli1_1.1.0-2+b6_amd64.deb ...
Unpacking libbrotli1:amd64 (1.1.0-2+b6) ...
Selecting previously unselected package libpng16-16t64:amd64.
Preparing to unpack .../192-libpng16-16t64_1.6.45-1_amd64.deb ...
Unpacking libpng16-16t64:amd64 (1.6.45-1) ...
Selecting previously unselected package libfreetype6:amd64.
Preparing to unpack .../193-libfreetype6_2.13.3+dfsg-1_amd64.deb ...
Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../194-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../195-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../196-fontconfig-config_2.15.0-2_amd64.deb ...
Unpacking fontconfig-config (2.15.0-2) ...
Selecting previously unselected package libfontconfig1:amd64.
Preparing to unpack .../197-libfontconfig1_2.15.0-2_amd64.deb ...
Unpacking libfontconfig1:amd64 (2.15.0-2) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../198-fontconfig_2.15.0-2_amd64.deb ...
Unpacking fontconfig (2.15.0-2) ...
Selecting previously unselected package libarray-utils-perl.
Preparing to unpack .../199-libarray-utils-perl_0.5-3_all.deb ...
Unpacking libarray-utils-perl (0.5-3) ...
Selecting previously unselected package libblas3:amd64.
Preparing to unpack .../200-libblas3_3.12.0-4_amd64.deb ...
Unpacking libblas3:amd64 (3.12.0-4) ...
Selecting previously unselected package libpixman-1-0:amd64.
Preparing to unpack .../201-libpixman-1-0_0.44.0-3_amd64.deb ...
Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
Selecting previously unselected package libxau6:amd64.
Preparing to unpack .../202-libxau6_1%3a1.0.11-1_amd64.deb ...
Unpacking libxau6:amd64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:amd64.
Preparing to unpack .../203-libxdmcp6_1%3a1.1.5-1_amd64.deb ...
Unpacking libxdmcp6:amd64 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:amd64.
Preparing to unpack .../204-libxcb1_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb1:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../205-libx11-data_2%3a1.8.10-2_all.deb ...
Unpacking libx11-data (2:1.8.10-2) ...
Selecting previously unselected package libx11-6:amd64.
Preparing to unpack .../206-libx11-6_2%3a1.8.10-2_amd64.deb ...
Unpacking libx11-6:amd64 (2:1.8.10-2) ...
Selecting previously unselected package libxcb-render0:amd64.
Preparing to unpack .../207-libxcb-render0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0:amd64.
Preparing to unpack .../208-libxcb-shm0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxext6:amd64.
Preparing to unpack .../209-libxext6_2%3a1.3.4-1+b3_amd64.deb ...
Unpacking libxext6:amd64 (2:1.3.4-1+b3) ...
Selecting previously unselected package libxrender1:amd64.
Preparing to unpack .../210-libxrender1_1%3a0.9.10-1.1+b3_amd64.deb ...
Unpacking libxrender1:amd64 (1:0.9.10-1.1+b3) ...
Selecting previously unselected package libcairo2:amd64.
Preparing to unpack .../211-libcairo2_1.18.2-2_amd64.deb ...
Unpacking libcairo2:amd64 (1.18.2-2) ...
Selecting previously unselected package libcom-err2:amd64.
Preparing to unpack .../212-libcom-err2_1.47.2-1_amd64.deb ...
Unpacking libcom-err2:amd64 (1.47.2-1) ...
Selecting previously unselected package libconst-fast-perl.
Preparing to unpack .../213-libconst-fast-perl_0.014-2_all.deb ...
Unpacking libconst-fast-perl (0.014-2) ...
Selecting previously unselected package libkrb5support0:amd64.
Preparing to unpack .../214-libkrb5support0_1.21.3-4_amd64.deb ...
Unpacking libkrb5support0:amd64 (1.21.3-4) ...
Selecting previously unselected package libk5crypto3:amd64.
Preparing to unpack .../215-libk5crypto3_1.21.3-4_amd64.deb ...
Unpacking libk5crypto3:amd64 (1.21.3-4) ...
Selecting previously unselected package libkeyutils1:amd64.
Preparing to unpack .../216-libkeyutils1_1.6.3-4_amd64.deb ...
Unpacking libkeyutils1:amd64 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:amd64.
Preparing to unpack .../217-libkrb5-3_1.21.3-4_amd64.deb ...
Unpacking libkrb5-3:amd64 (1.21.3-4) ...
Selecting previously unselected package libgssapi-krb5-2:amd64.
Preparing to unpack .../218-libgssapi-krb5-2_1.21.3-4_amd64.deb ...
Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ...
Selecting previously unselected package libnghttp2-14:amd64.
Preparing to unpack .../219-libnghttp2-14_1.64.0-1_amd64.deb ...
Unpacking libnghttp2-14:amd64 (1.64.0-1) ...
Selecting previously unselected package libpsl5t64:amd64.
Preparing to unpack .../220-libpsl5t64_0.21.2-1.1+b1_amd64.deb ...
Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../221-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:amd64.
Preparing to unpack .../222-libssh2-1t64_1.11.1-1_amd64.deb ...
Unpacking libssh2-1t64:amd64 (1.11.1-1) ...
Selecting previously unselected package libcurl4t64:amd64.
Preparing to unpack .../223-libcurl4t64_8.11.1-1+b1_amd64.deb ...
Unpacking libcurl4t64:amd64 (8.11.1-1+b1) ...
Selecting previously unselected package libdata-compare-perl.
Preparing to unpack .../224-libdata-compare-perl_1.29-1_all.deb ...
Unpacking libdata-compare-perl (1.29-1) ...
Selecting previously unselected package libdatrie1:amd64.
Preparing to unpack .../225-libdatrie1_0.2.13-3+b1_amd64.deb ...
Unpacking libdatrie1:amd64 (0.2.13-3+b1) ...
Selecting previously unselected package libdeflate0:amd64.
Preparing to unpack .../226-libdeflate0_1.23-1+b1_amd64.deb ...
Unpacking libdeflate0:amd64 (1.23-1+b1) ...
Selecting previously unselected package libpod-eventual-perl.
Preparing to unpack .../227-libpod-eventual-perl_0.094003-1_all.deb ...
Unpacking libpod-eventual-perl (0.094003-1) ...
Selecting previously unselected package libstring-truncate-perl.
Preparing to unpack .../228-libstring-truncate-perl_1.100603-1_all.deb ...
Unpacking libstring-truncate-perl (1.100603-1) ...
Selecting previously unselected package libpod-elemental-perl.
Preparing to unpack .../229-libpod-elemental-perl_0.103006-1_all.deb ...
Unpacking libpod-elemental-perl (0.103006-1) ...
Selecting previously unselected package libpod-elemental-perlmunger-perl.
Preparing to unpack .../230-libpod-elemental-perlmunger-perl_0.200007-1_all.deb ...
Unpacking libpod-elemental-perlmunger-perl (0.200007-1) ...
Selecting previously unselected package libpod-weaver-perl.
Preparing to unpack .../231-libpod-weaver-perl_4.020-1_all.deb ...
Unpacking libpod-weaver-perl (4.020-1) ...
Selecting previously unselected package libdist-zilla-plugin-podweaver-perl.
Preparing to unpack .../232-libdist-zilla-plugin-podweaver-perl_4.010-1_all.deb ...
Unpacking libdist-zilla-plugin-podweaver-perl (4.010-1) ...
Selecting previously unselected package libenv-path-perl.
Preparing to unpack .../233-libenv-path-perl_0.19-4_all.deb ...
Unpacking libenv-path-perl (0.19-4) ...
Selecting previously unselected package libfile-chdir-perl.
Preparing to unpack .../234-libfile-chdir-perl_0.1008-1.2_all.deb ...
Unpacking libfile-chdir-perl (0.1008-1.2) ...
Selecting previously unselected package libfile-grep-perl.
Preparing to unpack .../235-libfile-grep-perl_0.02-3_all.deb ...
Unpacking libfile-grep-perl (0.02-3) ...
Selecting previously unselected package libfile-slurper-perl.
Preparing to unpack .../236-libfile-slurper-perl_0.014-1_all.deb ...
Unpacking libfile-slurper-perl (0.014-1) ...
Selecting previously unselected package libfile-which-perl.
Preparing to unpack .../237-libfile-which-perl_1.27-2_all.deb ...
Unpacking libfile-which-perl (1.27-2) ...
Selecting previously unselected package libfindbin-libs-perl.
Preparing to unpack .../238-libfindbin-libs-perl_3.0.2-1_all.deb ...
Unpacking libfindbin-libs-perl (3.0.2-1) ...
Selecting previously unselected package libfribidi0:amd64.
Preparing to unpack .../239-libfribidi0_1.0.16-1_amd64.deb ...
Unpacking libfribidi0:amd64 (1.0.16-1) ...
Selecting previously unselected package libgfortran5:amd64.
Preparing to unpack .../240-libgfortran5_14.2.0-14_amd64.deb ...
Unpacking libgfortran5:amd64 (14.2.0-14) ...
Selecting previously unselected package libglib2.0-0t64:amd64.
Preparing to unpack .../241-libglib2.0-0t64_2.82.4-2_amd64.deb ...
Unpacking libglib2.0-0t64:amd64 (2.82.4-2) ...
Selecting previously unselected package libheap-perl.
Preparing to unpack .../242-libheap-perl_0.80-5_all.deb ...
Unpacking libheap-perl (0.80-5) ...
Selecting previously unselected package libset-object-perl.
Preparing to unpack .../243-libset-object-perl_1.42-1+b5_amd64.deb ...
Unpacking libset-object-perl (1.42-1+b5) ...
Selecting previously unselected package libgraph-perl.
Preparing to unpack .../244-libgraph-perl_1%3a0.9729-1_all.deb ...
Unpacking libgraph-perl (1:0.9729-1) ...
Selecting previously unselected package libspiffy-perl.
Preparing to unpack .../245-libspiffy-perl_0.46-1_all.deb ...
Unpacking libspiffy-perl (0.46-1) ...
Selecting previously unselected package libio-all-perl.
Preparing to unpack .../246-libio-all-perl_0.87-2_all.deb ...
Unpacking libio-all-perl (0.87-2) ...
Selecting previously unselected package libparse-yapp-perl.
Preparing to unpack .../247-libparse-yapp-perl_1.21-4_all.deb ...
Unpacking libparse-yapp-perl (1.21-4) ...
Selecting previously unselected package libxml-parser-perl.
Preparing to unpack .../248-libxml-parser-perl_2.47-1+b3_amd64.deb ...
Unpacking libxml-parser-perl (2.47-1+b3) ...
Selecting previously unselected package libxml-writer-perl.
Preparing to unpack .../249-libxml-writer-perl_0.900-2_all.deb ...
Unpacking libxml-writer-perl (0.900-2) ...
Selecting previously unselected package libgraph-readwrite-perl.
Preparing to unpack .../250-libgraph-readwrite-perl_2.10-1_all.deb ...
Unpacking libgraph-readwrite-perl (2.10-1) ...
Selecting previously unselected package libgraphite2-3:amd64.
Preparing to unpack .../251-libgraphite2-3_1.3.14-2+b1_amd64.deb ...
Unpacking libgraphite2-3:amd64 (1.3.14-2+b1) ...
Selecting previously unselected package libharfbuzz0b:amd64.
Preparing to unpack .../252-libharfbuzz0b_10.2.0-1_amd64.deb ...
Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../253-x11-common_1%3a7.7+23.2_all.deb ...
Unpacking x11-common (1:7.7+23.2) ...
Selecting previously unselected package libice6:amd64.
Preparing to unpack .../254-libice6_2%3a1.1.1-1_amd64.deb ...
Unpacking libice6:amd64 (2:1.1.1-1) ...
Selecting previously unselected package libjbig0:amd64.
Preparing to unpack .../255-libjbig0_2.1-6.1+b2_amd64.deb ...
Unpacking libjbig0:amd64 (2.1-6.1+b2) ...
Selecting previously unselected package libjpeg62-turbo:amd64.
Preparing to unpack .../256-libjpeg62-turbo_1%3a2.1.5-3+b1_amd64.deb ...
Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ...
Selecting previously unselected package liblapack3:amd64.
Preparing to unpack .../257-liblapack3_3.12.0-4_amd64.deb ...
Unpacking liblapack3:amd64 (3.12.0-4) ...
Selecting previously unselected package liblerc4:amd64.
Preparing to unpack .../258-liblerc4_4.0.0+ds-5_amd64.deb ...
Unpacking liblerc4:amd64 (4.0.0+ds-5) ...
Selecting previously unselected package liblmdb0:amd64.
Preparing to unpack .../259-liblmdb0_0.9.31-1+b2_amd64.deb ...
Unpacking liblmdb0:amd64 (0.9.31-1+b2) ...
Selecting previously unselected package liblog-log4perl-perl.
Preparing to unpack .../260-liblog-log4perl-perl_1.57-1_all.deb ...
Unpacking liblog-log4perl-perl (1.57-1) ...
Selecting previously unselected package libmbedcrypto16:amd64.
Preparing to unpack .../261-libmbedcrypto16_3.6.2-3_amd64.deb ...
Unpacking libmbedcrypto16:amd64 (3.6.2-3) ...
Selecting previously unselected package libmbedx509-7:amd64.
Preparing to unpack .../262-libmbedx509-7_3.6.2-3_amd64.deb ...
Unpacking libmbedx509-7:amd64 (3.6.2-3) ...
Selecting previously unselected package libmbedtls21:amd64.
Preparing to unpack .../263-libmbedtls21_3.6.2-3_amd64.deb ...
Unpacking libmbedtls21:amd64 (3.6.2-3) ...
Selecting previously unselected package libpadwalker-perl.
Preparing to unpack .../264-libpadwalker-perl_2.5-1+b6_amd64.deb ...
Unpacking libpadwalker-perl (2.5-1+b6) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../265-libthai-data_0.1.29-2_all.deb ...
Unpacking libthai-data (0.1.29-2) ...
Selecting previously unselected package libthai0:amd64.
Preparing to unpack .../266-libthai0_0.1.29-2+b1_amd64.deb ...
Unpacking libthai0:amd64 (0.1.29-2+b1) ...
Selecting previously unselected package libpango-1.0-0:amd64.
Preparing to unpack .../267-libpango-1.0-0_1.56.1-1_amd64.deb ...
Unpacking libpango-1.0-0:amd64 (1.56.1-1) ...
Selecting previously unselected package libpangoft2-1.0-0:amd64.
Preparing to unpack .../268-libpangoft2-1.0-0_1.56.1-1_amd64.deb ...
Unpacking libpangoft2-1.0-0:amd64 (1.56.1-1) ...
Selecting previously unselected package libpangocairo-1.0-0:amd64.
Preparing to unpack .../269-libpangocairo-1.0-0_1.56.1-1_amd64.deb ...
Unpacking libpangocairo-1.0-0:amd64 (1.56.1-1) ...
Selecting previously unselected package libpaper2:amd64.
Preparing to unpack .../270-libpaper2_2.2.5-0.3_amd64.deb ...
Unpacking libpaper2:amd64 (2.2.5-0.3) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../271-libpaper-utils_2.2.5-0.3_amd64.deb ...
Unpacking libpaper-utils (2.2.5-0.3) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../272-libsensors-config_1%3a3.6.0-10_all.deb ...
Unpacking libsensors-config (1:3.6.0-10) ...
Selecting previously unselected package libsensors5:amd64.
Preparing to unpack .../273-libsensors5_1%3a3.6.0-10+b1_amd64.deb ...
Unpacking libsensors5:amd64 (1:3.6.0-10+b1) ...
Selecting previously unselected package libsharpyuv0:amd64.
Preparing to unpack .../274-libsharpyuv0_1.5.0-0.1_amd64.deb ...
Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libsm6:amd64.
Preparing to unpack .../275-libsm6_2%3a1.2.4-1_amd64.deb ...
Unpacking libsm6:amd64 (2:1.2.4-1) ...
Selecting previously unselected package libtcl8.6:amd64.
Preparing to unpack .../276-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Selecting previously unselected package libtest-file-perl.
Preparing to unpack .../277-libtest-file-perl_1.994-1_all.deb ...
Unpacking libtest-file-perl (1.994-1) ...
Selecting previously unselected package libtest2-suite-perl.
Preparing to unpack .../278-libtest2-suite-perl_0.000163-1_all.deb ...
Unpacking libtest2-suite-perl (0.000163-1) ...
Selecting previously unselected package libtest-files-perl.
Preparing to unpack .../279-libtest-files-perl_0.26-1_all.deb ...
Unpacking libtest-files-perl (0.26-1) ...
Selecting previously unselected package libtest-output-perl.
Preparing to unpack .../280-libtest-output-perl_1.035-1_all.deb ...
Unpacking libtest-output-perl (1.035-1) ...
Selecting previously unselected package libtext-csv-perl.
Preparing to unpack .../281-libtext-csv-perl_2.05-1_all.deb ...
Unpacking libtext-csv-perl (2.05-1) ...
Selecting previously unselected package libwebp7:amd64.
Preparing to unpack .../282-libwebp7_1.5.0-0.1_amd64.deb ...
Unpacking libwebp7:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libtiff6:amd64.
Preparing to unpack .../283-libtiff6_4.5.1+git230720-5_amd64.deb ...
Unpacking libtiff6:amd64 (4.5.1+git230720-5) ...
Selecting previously unselected package libtingea0:amd64.
Preparing to unpack .../284-libtingea0_21-361-2+b2_amd64.deb ...
Unpacking libtingea0:amd64 (21-361-2+b2) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../285-libtirpc-common_1.3.4+ds-1.3_all.deb ...
Unpacking libtirpc-common (1.3.4+ds-1.3) ...
Selecting previously unselected package libtirpc3t64:amd64.
Preparing to unpack .../286-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
Selecting previously unselected package libxft2:amd64.
Preparing to unpack .../287-libxft2_2.3.6-1+b3_amd64.deb ...
Unpacking libxft2:amd64 (2.3.6-1+b3) ...
Selecting previously unselected package libxss1:amd64.
Preparing to unpack .../288-libxss1_1%3a1.2.3-1+b3_amd64.deb ...
Unpacking libxss1:amd64 (1:1.2.3-1+b3) ...
Selecting previously unselected package libtk8.6:amd64.
Preparing to unpack .../289-libtk8.6_8.6.16-1_amd64.deb ...
Unpacking libtk8.6:amd64 (8.6.16-1) ...
Selecting previously unselected package libuv1t64:amd64.
Preparing to unpack .../290-libuv1t64_1.48.0-7_amd64.deb ...
Unpacking libuv1t64:amd64 (1.48.0-7) ...
Selecting previously unselected package libxt6t64:amd64.
Preparing to unpack .../291-libxt6t64_1%3a1.2.1-1.2+b2_amd64.deb ...
Unpacking libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Selecting previously unselected package mafft.
Preparing to unpack .../292-mafft_7.505-1_amd64.deb ...
Unpacking mafft (7.505-1) ...
Selecting previously unselected package mcl.
Preparing to unpack .../293-mcl_1%3a22-282+ds-3_amd64.deb ...
Unpacking mcl (1:22-282+ds-3) ...
Selecting previously unselected package ncbi-data.
Preparing to unpack .../294-ncbi-data_6.1.20170106+dfsg2-5_all.deb ...
Unpacking ncbi-data (6.1.20170106+dfsg2-5) ...
Selecting previously unselected package ncbi-blast+.
Preparing to unpack .../295-ncbi-blast+_2.16.0+ds-6+b1_amd64.deb ...
Unpacking ncbi-blast+ (2.16.0+ds-6+b1) ...
Selecting previously unselected package sysstat.
Preparing to unpack .../296-sysstat_12.7.5-2_amd64.deb ...
Unpacking sysstat (12.7.5-2) ...
Selecting previously unselected package parallel.
Preparing to unpack .../297-parallel_20240222+ds-2_all.deb ...
Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel'
Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel'
Unpacking parallel (20240222+ds-2) ...
Selecting previously unselected package prank.
Preparing to unpack .../298-prank_0.0.170427+dfsg-3_amd64.deb ...
Unpacking prank (0.0.170427+dfsg-3) ...
Selecting previously unselected package zip.
Preparing to unpack .../299-zip_3.0-14_amd64.deb ...
Unpacking zip (3.0-14) ...
Selecting previously unselected package unzip.
Preparing to unpack .../300-unzip_6.0-28_amd64.deb ...
Unpacking unzip (6.0-28) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../301-xdg-utils_1.2.1-2_all.deb ...
Unpacking xdg-utils (1.2.1-2) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../302-r-base-core_4.4.2-1_amd64.deb ...
Unpacking r-base-core (4.4.2-1) ...
Selecting previously unselected package sbuild-build-depends-main-dummy.
Preparing to unpack .../303-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up cd-hit (4.8.1-4) ...
Setting up libarray-utils-perl (0.5-3) ...
Setting up media-types (10.1.0) ...
Setting up libmodule-pluggable-perl (5.2-5) ...
Setting up libpipeline1:amd64 (1.5.8-1) ...
Setting up liblmdb0:amd64 (0.9.31-1+b2) ...
Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ...
Setting up libfile-sharedir-install-perl (0.14-2) ...
Setting up ncbi-data (6.1.20170106+dfsg2-5) ...
Setting up libpixman-1-0:amd64 (0.44.0-3) ...
Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
Setting up libfile-slurper-perl (0.014-1) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libxau6:amd64 (1:1.0.11-1) ...
Setting up libxdmcp6:amd64 (1:1.1.5-1) ...
Setting up libkeyutils1:amd64 (1.6.3-4) ...
Setting up libxcb1:amd64 (1.17.0-2+b1) ...
Setting up libsafe-isa-perl (1.000010-1) ...
Setting up libtie-ixhash-perl (1.23-4) ...
Setting up libtask-weaken-perl (1.06-2) ...
Setting up libicu72:amd64 (72.1-6) ...
Setting up liblerc4:amd64 (4.0.0+ds-5) ...
Setting up bsdextrautils (2.40.4-1) ...
Setting up libparse-yapp-perl (1.21-4) ...
Setting up libclass-inspector-perl (1.36-3) ...
Setting up libdynaloader-functions-perl (0.004-1) ...
Setting up libdatrie1:amd64 (0.2.13-3+b1) ...
Setting up libtext-glob-perl (0.11-3) ...
Setting up libtest-deep-perl (1.204-1) ...
Setting up libclass-method-modifiers-perl (2.15-1) ...
Setting up libfile-pushd-perl (1.016-2) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libxcb-render0:amd64 (1.17.0-2+b1) ...
Setting up mafft (7.505-1) ...
Setting up libclone-perl:amd64 (0.47-1+b1) ...
Setting up libalgorithm-diff-perl (1.201-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3+b3) ...
Setting up libcpanel-json-xs-perl:amd64 (4.39-1) ...
Setting up libio-stringy-perl (2.113-2) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up libhtml-tagset-perl (3.24-1) ...
Setting up libtest-file-perl (1.994-1) ...
Setting up libyaml-pp-perl (0.38.0-1) ...
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libbrotli1:amd64 (1.1.0-2+b6) ...
Setting up libheap-perl (0.80-5) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libuv1t64:amd64 (1.48.0-7) ...
Setting up libmagic1t64:amd64 (1:5.45-3+b1) ...
Setting up x11-common (1:7.7+23.2) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libtry-tiny-perl (0.32-1) ...
Setting up libsensors-config (1:3.6.0-10) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libnghttp2-14:amd64 (1.64.0-1) ...
Setting up libdeflate0:amd64 (1.23-1+b1) ...
Setting up perl-openssl-defaults:amd64 (7+b2) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up libclass-singleton-perl (1.6-2) ...
Setting up libpadwalker-perl (2.5-1+b6) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ...
Setting up libfindbin-libs-perl (3.0.2-1) ...
Setting up libcom-err2:amd64 (1.47.2-1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libxstring-perl:amd64 (0.005-2+b4) ...
Setting up libyaml-tiny-perl (1.76-1) ...
Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libjbig0:amd64 (2.1-6.1+b2) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up libelf1t64:amd64 (0.192-4) ...
Setting up libtest2-suite-perl (0.000163-1) ...
Setting up libkrb5support0:amd64 (1.21.3-4) ...
Setting up libterm-encoding-perl (0.03-2) ...
Setting up libnumber-compare-perl (0.03-3) ...
Setting up libscope-guard-perl (0.21-2) ...
Setting up libfile-copy-recursive-perl (0.45-4) ...
Setting up tzdata (2025a-1) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Wed Jan 22 12:13:43 UTC 2025.
Universal Time is now:  Wed Jan 22 12:13:43 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up libjson-maybexs-perl (1.004008-1) ...
Setting up libio-string-perl (1.08-4) ...
Setting up zip (3.0-14) ...
Setting up libpackage-stash-xs-perl:amd64 (0.30-1+b4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libglib2.0-0t64:amd64 (2.82.4-2) ...
No schema files found: doing nothing.
Setting up libblas3:amd64 (3.12.0-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up libclass-data-inheritable-perl (0.10-1) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libset-object-perl (1.42-1+b5) ...
Setting up liblog-log4perl-perl (1.57-1) ...
Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ...
Setting up libx11-data (2:1.8.10-2) ...
Setting up libtext-diff-perl (1.45-2) ...
Setting up libfile-find-rule-perl (0.34-3) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libio-tiecombine-perl (1.005-3) ...
Setting up libperlio-utf8-strict-perl (0.010-1+b3) ...
Setting up libxml-writer-perl (0.900-2) ...
Setting up libenv-path-perl (0.19-4) ...
Setting up libfribidi0:amd64 (1.0.16-1) ...
Setting up libproc2-0:amd64 (2:4.0.4-6) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:amd64 (1.6.45-1) ...
Setting up libvariable-magic-perl (0.64-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtext-template-perl (1.61-1) ...
Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Setting up libfile-grep-perl (0.02-3) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up liblist-moreutils-xs-perl (0.430-4+b2) ...
Setting up libsensors5:amd64 (1:3.6.0-10+b1) ...
Setting up libk5crypto3:amd64 (1.21.3-4) ...
Setting up libparams-util-perl (1.102-3+b1) ...
Setting up libspiffy-perl (0.46-1) ...
Setting up libgfortran5:amd64 (14.2.0-14) ...
Setting up autoconf (2.72-3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:amd64 (1.5.0-0.1) ...
Setting up libcapture-tiny-perl (0.48-2) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libsub-name-perl:amd64 (0.28-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up libdata-stag-perl (0.14-3) ...
Setting up libfile-chdir-perl (0.1008-1.2) ...
Setting up sensible-utils (0.0.24) ...
Setting up libtiff6:amd64 (4.5.1+git230720-5) ...
Setting up libpath-tiny-perl (0.146-1) ...
Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-6) ...
Setting up libjson-perl (4.10000-1) ...
Setting up libtingea0:amd64 (21-361-2+b2) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libfile-sharedir-perl (1.118-3) ...
Setting up libsub-uplevel-perl (0.2800-3) ...
Setting up libx11-6:amd64 (2:1.8.10-2) ...
Setting up libaliased-perl (0.34-3) ...
Setting up libthai-data (0.1.29-2) ...
Setting up libcarp-clan-perl (6.08-2) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up fasttree (2.1.11-2) ...
Setting up netbase (6.4) ...

Configuration file '/etc/protocols'
 ==> File on system created by you or by a script.
 ==> File also in package provided by package maintainer.
 ==> Using current old file as you requested.

Configuration file '/etc/services'
 ==> File on system created by you or by a script.
 ==> File also in package provided by package maintainer.
 ==> Using current old file as you requested.
Setting up libsub-quote-perl (2.006008-1) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libclass-xsaccessor-perl (1.19-4+b5) ...
Setting up libkrb5-3:amd64 (1.21.3-4) ...
Setting up libmodule-path-perl (0.19-3) ...
Setting up libbio-perl-perl (1.7.8-1) ...
Setting up libmbedcrypto16:amd64 (3.6.2-3) ...
Setting up libpaper2:amd64 (2.2.5-0.3) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libexporter-tiny-perl (1.006002-1) ...
Setting up libterm-readkey-perl (2.38-2+b4) ...
Setting up libperl-version-perl (1.017-1) ...
Setting up openssl (3.4.0-2) ...
Setting up libautobox-perl (3.0.2-1+b1) ...
Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up bedtools (2.31.1+dfsg-2) ...
Setting up liburi-perl (5.30-1) ...
Setting up libpython3-stdlib:amd64 (3.13.1-2) ...
Setting up prank (0.0.170427+dfsg-3) ...
Setting up libtext-csv-perl (2.05-1) ...
Setting up libnet-ssleay-perl:amd64 (1.94-2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-1) ...
Setting up libice6:amd64 (2:1.1.1-1) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up liblapack3:amd64 (3.12.0-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up gettext (0.23.1-1) ...
Setting up libfile-listing-perl (6.16-1) ...
Setting up libhash-merge-simple-perl (0.052-1) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1+b3) ...
Setting up libtool (2.5.4-2) ...
Setting up python3.13 (3.13.1-3) ...
Setting up fontconfig-config (2.15.0-2) ...
Setting up liblist-moreutils-perl (0.430-2) ...
Setting up libtest-warn-perl (0.37-2) ...
Setting up libtype-tiny-perl (2.004000-1) ...
Setting up libtest-differences-perl (0.71-1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b3) ...
Setting up libnet-http-perl (6.23-1) ...
Setting up python3 (3.13.1-2) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libpaper-utils (2.2.5-0.3) ...
Setting up libio-all-perl (0.87-2) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libgraph-perl (1:0.9729-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ...
Setting up libdata-compare-perl (1.29-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:amd64 (0.1.29-2+b1) ...
Setting up ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libmbedx509-7:amd64 (3.6.2-3) ...
Setting up libtest-exception-perl (0.43-3) ...
Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
Setting up mcl (1:22-282+ds-3) ...
Setting up libppi-perl (1.281-1) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up libtest-output-perl (1.035-1) ...
Setting up ucf (3.0048) ...
Setting up libsyntax-keyword-junction-perl (0.003009-1) ...
Setting up libmbedtls21:amd64 (3.6.2-3) ...
Setting up dh-strip-nondeterminism (1.14.1-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up groff-base (1.23.0-7) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ...
Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
Setting up libxss1:amd64 (1:1.2.3-1+b3) ...
Setting up libfontconfig1:amd64 (2.15.0-2) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:amd64 (2:1.2.4-1) ...
Setting up sysstat (12.7.5-2) ...
Creating config file /etc/default/sysstat with new version
update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode
Setting up libio-socket-ssl-perl (2.089-1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (7.00-2) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libstring-truncate-perl (1.100603-1) ...
Setting up libstring-flogger-perl (1.101246-1) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up fontconfig (2.15.0-2) ...
Regenerating fonts cache... done.
Setting up libparams-validationcompiler-perl (0.31-1) ...
Setting up libxft2:amd64 (2.3.6-1+b3) ...
Setting up libcurl4t64:amd64 (8.11.1-1+b1) ...
Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libtest-most-perl (0.38-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libtk8.6:amd64 (8.6.16-1) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libpango-1.0-0:amd64 (1.56.1-1) ...
Setting up libsub-exporter-formethods-perl (0.100055-1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libmixin-linewise-perl (0.111-1) ...
Setting up libcairo2:amd64 (1.18.2-2) ...
Setting up libconfig-ini-perl (1:0.029-1) ...
Setting up ncbi-blast+ (2.16.0+ds-6+b1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libstring-formatter-perl (1.235-1) ...
Setting up parallel (20240222+ds-2) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-section-perl (0.200008-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.56.1-1) ...
Setting up libsub-exporter-globexporter-perl (0.006-1) ...
Setting up libstring-rewriteprefix-perl (0.009-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.56.1-1) ...
Setting up bioperl (1.7.8-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up debhelper (13.24.1) ...
Setting up libpod-eventual-perl (0.094003-1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libtest-files-perl (0.26-1) ...
Setting up libsoftware-license-perl (0.104006-1) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libstring-errf-perl (0.009-1) ...
Setting up libspecio-perl (0.49-1) ...
Setting up r-base-core (4.4.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b4) ...
Setting up libparams-validate-perl:amd64 (1.31-2+b3) ...
Setting up libb-hooks-endofscope-perl (0.28-1) ...
Setting up libthrowable-perl (1.001-2) ...
Setting up libmoose-perl:amd64 (2.2207-1+b3) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libmoosex-setonce-perl (0.200002-2) ...
Setting up libgetopt-long-descriptive-perl (0.116-2) ...
Setting up librole-identifiable-perl (0.009-1) ...
Setting up libnamespace-autoclean-perl (0.31-1) ...
Setting up libdatetime-locale-perl (1:1.41-1) ...
Setting up libmoosex-role-parameterized-perl (1.11-2) ...
Setting up libmoose-autobox-perl (0.16-2) ...
Setting up libapp-cmd-perl (0.337-2) ...
Setting up librole-hasmessage-perl (0.007-1) ...
Setting up libperl-prereqscanner-perl (1.100-1) ...
Setting up libdatetime-timezone-perl (1:2.64-1+2025a) ...
Setting up libmoosex-types-perl (0.50-2) ...
Setting up libmoosex-oneargnew-perl (0.007-1) ...
Setting up libmoosex-lazyrequire-perl (0.11-2) ...
Setting up liblog-dispatch-perl (2.71-1) ...
Setting up libconfig-mvp-perl (2.200013-1) ...
Setting up libdatetime-perl (2:1.65-1+b2) ...
Setting up libpod-elemental-perl (0.103006-1) ...
Setting up libmoosex-types-perl-perl (0.101344-1) ...
Setting up libconfig-mvp-reader-ini-perl (2.101465-1) ...
Setting up liblog-dispatch-array-perl (1.005-1) ...
Setting up libpod-elemental-perlmunger-perl (0.200007-1) ...
Setting up liblog-dispatchouli-perl (3.008-1) ...
Setting up libpod-weaver-perl (4.020-1) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libwww-perl (6.77-1) ...
Setting up libcpan-uploader-perl (0.103018-1) ...
Setting up libdist-zilla-perl (6.032-1) ...
Setting up libdist-zilla-plugin-podweaver-perl (4.010-1) ...
Setting up libxml-parser-perl (2.47-1+b3) ...
Setting up dh-dist-zilla (1.4.1) ...
Setting up libgraph-readwrite-perl (2.10-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.40-5) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                          Wed, 22 Jan 2025 12:13:50 +0000 |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in all)

+------------------------------------------------------------------------------+
| Build environment                            Wed, 22 Jan 2025 12:13:50 +0000 |
+------------------------------------------------------------------------------+

Kernel: Linux 6.11.10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1 (2024-11-23) amd64 (x86_64)
Toolchain package versions: binutils_2.43.50.20250108-1 dpkg-dev_1.22.14 g++-13_13.3.0-12 g++-14_14.2.0-14 gcc-13_13.3.0-12 gcc-14_14.2.0-14 libc6-dev_2.40-5 libstdc++-13-dev_13.3.0-12 libstdc++-14-dev_14.2.0-14 libstdc++6_14.2.0-14 linux-libc-dev_6.12.10-1
Package versions: adduser_3.137 apt_2.9.24 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1 bedtools_2.31.1+dfsg-2 binutils_2.43.50.20250108-1 binutils-common_2.43.50.20250108-1 binutils-x86-64-linux-gnu_2.43.50.20250108-1 bioperl_1.7.8-1 bsdextrautils_2.40.4-1 bsdutils_1:2.40.4-1 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20241223 cd-hit_4.8.1-4 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-13_13.3.0-12 cpp-13-x86-64-linux-gnu_13.3.0-12 cpp-14_14.2.0-14 cpp-14-x86-64-linux-gnu_14.2.0-14 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-11 debconf_1.5.89 debhelper_13.24.1 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-dist-zilla_1.4.1 dh-strip-nondeterminism_1.14.1-1 diffutils_1:3.10-2 dirmngr_2.2.46-1+b1 dpkg_1.22.14 dpkg-dev_1.22.14 dwz_0.15-1+b1 eatmydata_131-2 fasttree_2.1.11-2 file_1:5.45-3+b1 findutils_4.10.0-3 fontconfig_2.15.0-2 fontconfig-config_2.15.0-2 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-13_13.3.0-12 g++-13-x86-64-linux-gnu_13.3.0-12 g++-14_14.2.0-14 g++-14-x86-64-linux-gnu_14.2.0-14 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.3.0-12 gcc-13-base_13.3.0-12 gcc-13-x86-64-linux-gnu_13.3.0-12 gcc-14_14.2.0-14 gcc-14-base_14.2.0-14 gcc-14-x86-64-linux-gnu_14.2.0-14 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 gnupg_2.2.46-1 gnupg-l10n_2.2.46-1 gnupg-utils_2.2.46-1+b1 gpg_2.2.46-1+b1 gpg-agent_2.2.46-1+b1 gpg-wks-client_2.2.46-1+b1 gpgconf_2.2.46-1+b1 gpgsm_2.2.46-1+b1 gpgv_2.2.46-1+b1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libalgorithm-c3-perl_0.11-2 libalgorithm-diff-perl_1.201-1 libaliased-perl_0.34-3 libapp-cmd-perl_0.337-2 libapt-pkg6.0t64_2.9.24 libarchive-zip-perl_1.68-1 libarray-utils-perl_0.5-3 libasan8_14.2.0-14 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-14 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b1 libautobox-perl_3.0.2-1+b1 libb-hooks-endofscope-perl_0.28-1 libb-hooks-op-check-perl_0.22-3+b2 libbinutils_2.43.50.20250108-1 libbio-perl-perl_1.7.8-1 libblas3_3.12.0-4 libblkid1_2.40.4-1 libbrotli1_1.1.0-2+b6 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-5 libc-dev-bin_2.40-5 libc-l10n_2.40-5 libc6_2.40-5 libc6-dev_2.40-5 libcairo2_1.18.2-2 libcap-ng0_0.8.5-4 libcap2_1:2.66-5+b1 libcapture-tiny-perl_0.48-2 libcarp-clan-perl_6.08-2 libcc1-0_14.2.0-14 libclass-c3-perl_0.35-2 libclass-data-inheritable-perl_0.10-1 libclass-inspector-perl_1.36-3 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b4 libclass-method-modifiers-perl_2.15-1 libclass-singleton-perl_1.6-2 libclass-xsaccessor-perl_1.19-4+b5 libclone-perl_0.47-1+b1 libcom-err2_1.47.2-1 libconfig-ini-perl_1:0.029-1 libconfig-mvp-perl_2.200013-1 libconfig-mvp-reader-ini-perl_2.101465-1 libconst-fast-perl_0.014-2 libcpan-uploader-perl_0.103018-1 libcpanel-json-xs-perl_4.39-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.43.50.20250108-1 libctf0_2.43.50.20250108-1 libcurl4t64_8.11.1-1+b1 libdata-compare-perl_1.29-1 libdata-optlist-perl_0.114-1 libdata-section-perl_0.200008-1 libdata-stag-perl_0.14-3 libdatetime-locale-perl_1:1.41-1 libdatetime-perl_2:1.65-1+b2 libdatetime-timezone-perl_1:2.64-1+2025a libdatrie1_0.2.13-3+b1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdeflate0_1.23-1+b1 libdevel-callchecker-perl_0.009-1+b1 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0500-1 libdist-checkconflicts-perl_0.11-2 libdist-zilla-perl_6.032-1 libdist-zilla-plugin-podweaver-perl_4.010-1 libdpkg-perl_1.22.14 libdynaloader-functions-perl_0.004-1 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libencode-locale-perl_1.05-3 libenv-path-perl_0.19-4 libeval-closure-perl_0.14-3 libexception-class-perl_1.45-1 libexpat1_2.6.4-1 libexporter-tiny-perl_1.006002-1 libffi8_3.4.6-1 libfile-chdir-perl_0.1008-1.2 libfile-copy-recursive-perl_0.45-4 libfile-find-rule-perl_0.34-3 libfile-grep-perl_0.02-3 libfile-listing-perl_6.16-1 libfile-pushd-perl_1.016-2 libfile-sharedir-install-perl_0.14-2 libfile-sharedir-perl_1.118-3 libfile-slurper-perl_0.014-1 libfile-stripnondeterminism-perl_1.14.1-1 libfile-which-perl_1.27-2 libfindbin-libs-perl_3.0.2-1 libfontconfig1_2.15.0-2 libfreetype6_2.13.3+dfsg-1 libfribidi0_1.0.16-1 libgcc-13-dev_13.3.0-12 libgcc-14-dev_14.2.0-14 libgcc-s1_14.2.0-14 libgcrypt20_1.11.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgetopt-long-descriptive-perl_0.116-2 libgfortran5_14.2.0-14 libglib2.0-0t64_2.82.4-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.8-2 libgomp1_14.2.0-14 libgpg-error0_1.51-3 libgprofng0_2.43.50.20250108-1 libgraph-perl_1:0.9729-1 libgraph-readwrite-perl_2.10-1 libgraphite2-3_1.3.14-2+b1 libgssapi-krb5-2_1.21.3-4 libharfbuzz0b_10.2.0-1 libhash-merge-simple-perl_0.052-1 libheap-perl_0.80-5 libhogweed6t64_3.10-1+b1 libhtml-parser-perl_3.83-1+b2 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_7.00-2 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-14 libice6_2:1.1.1-1 libicu72_72.1-6 libidn2-0_2.3.7-2+b1 libimport-into-perl_1.002005-2 libio-all-perl_0.87-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.089-1 libio-string-perl_1.08-4 libio-stringy-perl_2.113-2 libio-tiecombine-perl_1.005-3 libisl23_0.27-1 libitm1_14.2.0-14 libjansson4_2.14-2+b3 libjbig0_2.1-6.1+b2 libjpeg62-turbo_1:2.1.5-3+b1 libjson-maybexs-perl_1.004008-1 libjson-perl_4.10000-1 libk5crypto3_1.21.3-4 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-4 libkrb5support0_1.21.3-4 libksba8_1.6.7-2+b1 liblapack3_3.12.0-4 libldap-2.5-0_2.5.19+dfsg-1 libldap2_2.6.9+dfsg-1 liblerc4_4.0.0+ds-5 liblist-moreutils-perl_0.430-2 liblist-moreutils-xs-perl_0.430-4+b2 liblmdb0_0.9.31-1+b2 liblog-dispatch-array-perl_1.005-1 liblog-dispatch-perl_2.71-1 liblog-dispatchouli-perl_3.008-1 liblog-log4perl-perl_1.57-1 liblsan0_14.2.0-14 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.9.4-4 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmbedcrypto16_3.6.2-3 libmbedtls21_3.6.2-3 libmbedx509-7_3.6.2-3 libmd0_1.1.0-2+b1 libmixin-linewise-perl_0.111-1 libmodule-implementation-perl_0.09-2 libmodule-path-perl_0.19-3 libmodule-pluggable-perl_5.2-5 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoo-perl_2.005005-1 libmoose-autobox-perl_0.16-2 libmoose-perl_2.2207-1+b3 libmoosex-lazyrequire-perl_0.11-2 libmoosex-oneargnew-perl_0.007-1 libmoosex-role-parameterized-perl_1.11-2 libmoosex-setonce-perl_0.200002-2 libmoosex-types-perl_0.50-2 libmoosex-types-perl-perl_0.101344-1 libmount1_2.40.4-1 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libmro-compat-perl_0.15-2 libnamespace-autoclean-perl_0.31-1 libnamespace-clean-perl_0.27-2 libncursesw6_6.5-2+b1 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-2 libnettle8t64_3.10-1+b1 libnghttp2-14_1.64.0-1 libnpth0t64_1.8-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.5-3 libpackage-deprecationmanager-perl_0.18-1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b4 libpadwalker-perl_2.5-1+b6 libpam-modules_1.5.3-7+b1 libpam-modules-bin_1.5.3-7+b1 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7+b1 libpango-1.0-0_1.56.1-1 libpangocairo-1.0-0_1.56.1-1 libpangoft2-1.0-0_1.56.1-1 libpaper-utils_2.2.5-0.3 libpaper2_2.2.5-0.3 libparams-classify-perl_0.015-2+b4 libparams-util-perl_1.102-3+b1 libparams-validate-perl_1.31-2+b3 libparams-validationcompiler-perl_0.31-1 libparse-yapp-perl_1.21-4 libpath-tiny-perl_0.146-1 libpcre2-8-0_10.44-5 libperl-prereqscanner-perl_1.100-1 libperl-version-perl_1.017-1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.1-1 libperlio-utf8-strict-perl_0.010-1+b3 libpipeline1_1.5.8-1 libpixman-1-0_0.44.0-3 libpng16-16t64_1.6.45-1 libpod-elemental-perl_0.103006-1 libpod-elemental-perlmunger-perl_0.200007-1 libpod-eventual-perl_0.094003-1 libpod-weaver-perl_4.020-1 libppi-perl_1.281-1 libproc2-0_2:4.0.4-6 libpsl5t64_0.21.2-1.1+b1 libpython3-stdlib_3.13.1-2 libpython3.13-minimal_3.13.1-3 libpython3.13-stdlib_3.13.1-3 libquadmath0_14.2.0-14 libreadline8t64_8.2-6 librole-hasmessage-perl_0.007-1 librole-identifiable-perl_0.009-1 librole-tiny-perl_2.002004-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsafe-isa-perl_1.000010-1 libsasl2-2_2.1.28+dfsg1-8+b1 libsasl2-modules-db_2.1.28+dfsg1-8+b1 libscope-guard-perl_0.21-2 libseccomp2_2.5.5-2 libselinux1_3.7-3+b1 libsemanage-common_3.7-2 libsemanage2_3.7-2+b1 libsensors-config_1:3.6.0-10 libsensors5_1:3.6.0-10+b1 libsepol2_3.7-1 libset-object-perl_1.42-1+b5 libsframe1_2.43.50.20250108-1 libsharpyuv0_1.5.0-0.1 libsm6_2:1.2.4-1 libsmartcols1_2.40.4-1 libsoftware-license-perl_0.104006-1 libspecio-perl_0.49-1 libspiffy-perl_0.46-1 libsqlite3-0_3.46.1-1 libssh2-1t64_1.11.1-1 libssl3t64_3.4.0-2 libstdc++-13-dev_13.3.0-12 libstdc++-14-dev_14.2.0-14 libstdc++6_14.2.0-14 libstring-errf-perl_0.009-1 libstring-flogger-perl_1.101246-1 libstring-formatter-perl_1.235-1 libstring-rewriteprefix-perl_0.009-1 libstring-truncate-perl_1.100603-1 libsub-exporter-formethods-perl_0.100055-1 libsub-exporter-globexporter-perl_0.006-1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3+b3 libsub-install-perl_0.929-1 libsub-name-perl_0.28-1 libsub-quote-perl_2.006008-1 libsub-uplevel-perl_0.2800-3 libsyntax-keyword-junction-perl_0.003009-1 libsystemd0_257.2-2 libtask-weaken-perl_1.06-2 libtasn1-6_4.19.0-3+b3 libtcl8.6_8.6.16+dfsg-1 libterm-encoding-perl_0.03-2 libterm-readkey-perl_2.38-2+b4 libtest-deep-perl_1.204-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-file-perl_1.994-1 libtest-files-perl_0.26-1 libtest-most-perl_0.38-1 libtest-output-perl_1.035-1 libtest-warn-perl_0.37-2 libtest2-suite-perl_0.000163-1 libtext-charwidth-perl_0.04-11+b4 libtext-csv-perl_2.05-1 libtext-diff-perl_1.45-2 libtext-glob-perl_0.11-3 libtext-template-perl_1.61-1 libtext-wrapi18n-perl_0.06-10 libthai-data_0.1.29-2 libthai0_0.1.29-2+b1 libthrowable-perl_1.001-2 libtie-ixhash-perl_1.23-4 libtiff6_4.5.1+git230720-5 libtimedate-perl_2.3300-2 libtinfo6_6.5-2+b1 libtingea0_21-361-2+b2 libtirpc-common_1.3.4+ds-1.3 libtirpc3t64_1.3.4+ds-1.3+b1 libtk8.6_8.6.16-1 libtool_2.5.4-2 libtry-tiny-perl_0.32-1 libtsan2_14.2.0-14 libtype-tiny-perl_2.004000-1 libubsan1_14.2.0-14 libuchardet0_0.0.8-1+b2 libudev1_257.2-2 libunistring5_1.3-1 liburi-perl_5.30-1 libuuid1_2.40.4-1 libuv1t64_1.48.0-7 libvariable-magic-perl_0.64-1+b1 libwebp7_1.5.0-0.1 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.8.10-2 libx11-data_2:1.8.10-2 libxau6_1:1.0.11-1 libxcb-render0_1.17.0-2+b1 libxcb-shm0_1.17.0-2+b1 libxcb1_1.17.0-2+b1 libxdmcp6_1:1.1.5-1 libxext6_2:1.3.4-1+b3 libxft2_2.3.6-1+b3 libxml-parser-perl_2.47-1+b3 libxml-writer-perl_0.900-2 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libxrender1_1:0.9.10-1.1+b3 libxss1_1:1.2.3-1+b3 libxstring-perl_0.005-2+b4 libxt6t64_1:1.2.1-1.2+b2 libxxhash0_0.8.3-2 libyaml-pp-perl_0.38.0-1 libyaml-tiny-perl_1.76-1 libzstd1_1.5.6+dfsg-2 linux-libc-dev_6.12.10-1 locales-all_2.40-5 login_1:4.16.0-2+really2.40.4-1 login.defs_1:4.16.0-7 m4_1.4.19-5 mafft_7.505-1 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 mcl_1:22-282+ds-3 media-types_10.1.0 ncbi-blast+_2.16.0+ds-6+b1 ncbi-data_6.1.20170106+dfsg2-5 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 netbase_6.4 openssl_3.4.0-2 openssl-provider-legacy_3.4.0-2 parallel_20240222+ds-2 passwd_1:4.16.0-7 patch_2.7.6-7 perl_5.40.1-1 perl-base_5.40.1-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.1-1 perl-openssl-defaults_7+b2 pinentry-curses_1.3.1-2 po-debconf_1.0.21+nmu1 prank_0.0.170427+dfsg-3 procps_2:4.0.4-6 python3_3.13.1-2 python3-minimal_3.13.1-2 python3.13_3.13.1-3 python3.13-minimal_3.13.1-3 r-base-core_4.4.2-1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sqv_1.2.1-5 sysstat_12.7.5-2 sysvinit-utils_3.13-1 tar_1.35+dfsg-3.1 tzdata_2025a-1 ucf_3.0048 unzip_6.0-28 usr-is-merged_39+nmu2 util-linux_2.40.4-1 x11-common_1:7.7+23.2 xdg-utils_1.2.1-2 xz-utils_5.6.3-1+b1 zip_3.0-14 zlib1g_1:1.3.dfsg+really1.3.1-1+b1

+------------------------------------------------------------------------------+
| Build                                        Wed, 22 Jan 2025 12:13:50 +0000 |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: roary
Binary: roary
Architecture: all
Version: 3.13.0+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Homepage: https://sanger-pathogens.github.io/Roary/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/roary
Vcs-Git: https://salsa.debian.org/med-team/roary.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree
Build-Depends-Indep: perl
Package-List:
 roary deb science optional arch=all
Checksums-Sha1:
 ec41e9813412b1e168328131cabc91ae1ea06162 207348 roary_3.13.0+dfsg.orig.tar.xz
 d2845cda817077a90ae16f282ade21b25612ea0f 7308 roary_3.13.0+dfsg-2.debian.tar.xz
Checksums-Sha256:
 5450fe6f4bab8b27829d2ec6836c0a8c9a38d42b3891fab29b10a9587dee2fd1 207348 roary_3.13.0+dfsg.orig.tar.xz
 8eecf0867aba06a3aaf56ba0f2d21bb396aaa1ad1392defeeaf75f267830d7a6 7308 roary_3.13.0+dfsg-2.debian.tar.xz
Files:
 fe3935332843c9d4dfb4d4c5cb9080a6 207348 roary_3.13.0+dfsg.orig.tar.xz
 d26aa7dcb13361bf384ee6dfd489df10 7308 roary_3.13.0+dfsg-2.debian.tar.xz

-----BEGIN PGP SIGNATURE-----

iQIzBAEBCgAdFiEEUtW9Dn1NsITjS1hl1KQc+t2yDbUFAmdN7/UACgkQ1KQc+t2y
DbWiRRAAyCIexAN0Qqc5Efmh8zhru+SDTh3LlLVY11oiEw3XahBYPZ8pmeogRfL5
AcrIxDhOPRBvf+faHvUbII5R3nQMSwhMNPAbdEeSfK/JDWH67M9xhWj4DRgq0JHw
aH9RhiN3gsvxv4I9LJ70Y79fBrk0oY6QplLREJ8LHnbGMn00h/U4vf06nPFFLI0d
lo0mI0XBxQCmkDLL5/I1QW9Rf3rhT04hLynkNdMXIUZ3u4hPpHu61QzBvNVfO/XY
O5cuJ4awbPUmdUBjb6o6QzJw0u58RvNEt/snipu2j0OR1m323UddwYzNtI7VjqSh
LWJViXBLhbWYUVfWXx/FE5Y3aJpikKHbNR4i8bdcP8lrjRaoHulrbeGzQjelia8I
e6BAs8KcaFyRLDirFRN9oCtWvxL79koIYHuXaoUfvniXm8iiPpqGt6vCYhZOfAx1
3XfIV12Avhidevd1jgLp/046Zqc5zGJpAngUJpqSb8AHQY/lPg2hTLtdFQONnrt3
6O1QExGs59u/k+M8H7FHJ0TaKGaL7BSpjjEyncWHA5csdeik7cJA6D/L/EzfJbxV
vnY3lx0/HHf/1qVNUNBhyoj6b47f3N7/Uo6sQrZXM4kPsiJtKmxo9HjjDpbNVqcQ
yQ46LFTPJS2GsACHQudDAe3la3edk1bsKN1WKF30d1908EoAsdI=
=qHd7
-----END PGP SIGNATURE-----

gpgv: Signature made Mon Dec  2 17:35:49 2024 UTC
gpgv:                using RSA key 52D5BD0E7D4DB084E34B5865D4A41CFADDB20DB5
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./roary_3.13.0+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting roary in /build/roary-6JKoJ0/roary-3.13.0+dfsg
dpkg-source: info: unpacking roary_3.13.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking roary_3.13.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying rename_R_script.patch
dpkg-source: info: applying use-dz-starter.patch
dpkg-source: info: applying use-debian-perl-path.patch
dpkg-source: info: applying new-bioperl-require.patch

Check disk space
----------------

Sufficient free space for build

+------------------------------------------------------------------------------+
| Starting Timed Build Commands                Wed, 22 Jan 2025 12:13:50 +0000 |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network roary_3.13.0+dfsg-2 perl-5.40-throwaway amd64
--------------------------------------------------------------------------------------------------------------------


I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network roary_3.13.0+dfsg-2 perl-5.40-throwaway amd64'.

Finished processing commands.
--------------------------------------------------------------------------------

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LANGUAGE=en_GB:en
LC_ALL=C.UTF-8
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
LOGNAME=debomatic
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/roary-6JKoJ0/roary-3.13.0+dfsg
SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic
SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic
SCHROOT_COMMAND=env
SCHROOT_GID=110
SCHROOT_GROUP=sbuild
SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-4a359a21-5dd3-4bf1-b9f4-e3d5b4a6759e
SCHROOT_UID=1002
SCHROOT_USER=debomatic
SHELL=/bin/sh
USER=debomatic

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz
dpkg-buildpackage: info: source package roary
dpkg-buildpackage: info: source version 3.13.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Ananthu C V <weepingclown@disroot.org>
 dpkg-source -Zxz --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --with dist-zilla
   dh_dzil_clean
   dh_clean
 dpkg-source -Zxz -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building roary using existing ./roary_3.13.0+dfsg.orig.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building roary in roary_3.13.0+dfsg-2.debian.tar.xz
dpkg-source: info: building roary in roary_3.13.0+dfsg-2.dsc
 debian/rules binary
dh binary --with dist-zilla
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_dzil_build
make[1]: Entering directory '/build/roary-6JKoJ0/roary-3.13.0+dfsg'
mv bin/create_pan_genome_plots.R bin/create_pan_genome_plots
dh_dzil_build --
[DZ] beginning to build Bio-Roary
[DZ] writing Bio-Roary in .build/debian-build
[DZ] built in .build/debian-build
mv bin/create_pan_genome_plots bin/create_pan_genome_plots.R
make[1]: Leaving directory '/build/roary-6JKoJ0/roary-3.13.0+dfsg'
   dh_auto_configure -D .build/debian-build
	cd .build/debian-build && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/roary-6JKoJ0/roary-3.13.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/roary-6JKoJ0/roary-3.13.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro"
Warning: prerequisite Digest::MD5::File 0 not found.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::Roary
Writing MYMETA.yml and MYMETA.json
   dh_auto_build -D .build/debian-build
	cd .build/debian-build && make -j2
make[1]: Entering directory '/build/roary-6JKoJ0/roary-3.13.0+dfsg/.build/debian-build'
cp lib/Bio/Roary/AnnotateGroups.pm blib/lib/Bio/Roary/AnnotateGroups.pm
cp lib/Bio/Roary/AccessoryClustering.pm blib/lib/Bio/Roary/AccessoryClustering.pm
cp lib/Bio/Roary/AssemblyStatistics.pm blib/lib/Bio/Roary/AssemblyStatistics.pm
cp lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm blib/lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
cp lib/Bio/Roary/CommandLine/CreatePanGenome.pm blib/lib/Bio/Roary/CommandLine/CreatePanGenome.pm
cp lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm blib/lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm
cp lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm blib/lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
cp lib/Bio/Roary/AccessoryBinaryFasta.pm blib/lib/Bio/Roary/AccessoryBinaryFasta.pm
cp lib/Bio/Roary/Exceptions.pm blib/lib/Bio/Roary/Exceptions.pm
cp lib/Bio/Roary/ChunkFastaFile.pm blib/lib/Bio/Roary/ChunkFastaFile.pm
cp lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm blib/lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
cp lib/Bio/Roary/CommandLine/AssemblyStatistics.pm blib/lib/Bio/Roary/CommandLine/AssemblyStatistics.pm
cp lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm blib/lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
cp lib/Bio/Roary/CommandLine/Roary.pm blib/lib/Bio/Roary/CommandLine/Roary.pm
cp lib/Bio/Roary/BedFromGFFRole.pm blib/lib/Bio/Roary/BedFromGFFRole.pm
cp lib/Bio/Roary/CommandLine/QueryRoary.pm blib/lib/Bio/Roary/CommandLine/QueryRoary.pm
cp lib/Bio/Roary.pm blib/lib/Bio/Roary.pm
cp lib/Bio/Roary/AnalyseGroups.pm blib/lib/Bio/Roary/AnalyseGroups.pm
cp lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm blib/lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
cp lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
cp lib/Bio/Roary/CommandLine/IterativeCdhit.pm blib/lib/Bio/Roary/CommandLine/IterativeCdhit.pm
cp lib/Bio/Roary/External/Cdhit.pm blib/lib/Bio/Roary/External/Cdhit.pm
cp lib/Bio/Roary/CombinedProteome.pm blib/lib/Bio/Roary/CombinedProteome.pm
cp lib/Bio/Roary/ClustersRole.pm blib/lib/Bio/Roary/ClustersRole.pm
cp lib/Bio/Roary/External/CheckTools.pm blib/lib/Bio/Roary/External/CheckTools.pm
cp lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm blib/lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
cp lib/Bio/Roary/External/Blastp.pm blib/lib/Bio/Roary/External/Blastp.pm
cp lib/Bio/Roary/CommandLine/Common.pm blib/lib/Bio/Roary/CommandLine/Common.pm
cp lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm blib/lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
cp lib/Bio/Roary/JobRunner/Role.pm blib/lib/Bio/Roary/JobRunner/Role.pm
cp lib/Bio/Roary/GroupLabels.pm blib/lib/Bio/Roary/GroupLabels.pm
cp lib/Bio/Roary/MergeMultifastaAlignments.pm blib/lib/Bio/Roary/MergeMultifastaAlignments.pm
cp lib/Bio/Roary/IterativeCdhit.pm blib/lib/Bio/Roary/IterativeCdhit.pm
cp lib/Bio/Roary/InflateClusters.pm blib/lib/Bio/Roary/InflateClusters.pm
cp lib/Bio/Roary/Output/DifferenceBetweenSets.pm blib/lib/Bio/Roary/Output/DifferenceBetweenSets.pm
cp lib/Bio/Roary/Output/EMBLHeaderCommon.pm blib/lib/Bio/Roary/Output/EMBLHeaderCommon.pm
cp lib/Bio/Roary/FilterUnknownsFromFasta.pm blib/lib/Bio/Roary/FilterUnknownsFromFasta.pm
cp lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm blib/lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
cp lib/Bio/Roary/JobRunner/Local.pm blib/lib/Bio/Roary/JobRunner/Local.pm
cp lib/Bio/Roary/GeneNamesFromGFF.pm blib/lib/Bio/Roary/GeneNamesFromGFF.pm
cp lib/Bio/Roary/External/IterativeCdhit.pm blib/lib/Bio/Roary/External/IterativeCdhit.pm
cp lib/Bio/Roary/Output/GroupMultifasta.pm blib/lib/Bio/Roary/Output/GroupMultifasta.pm
cp lib/Bio/Roary/External/Fasttree.pm blib/lib/Bio/Roary/External/Fasttree.pm
cp lib/Bio/Roary/OrderGenes.pm blib/lib/Bio/Roary/OrderGenes.pm
cp lib/Bio/Roary/LookupGeneFiles.pm blib/lib/Bio/Roary/LookupGeneFiles.pm
cp lib/Bio/Roary/ExtractProteomeFromGFF.pm blib/lib/Bio/Roary/ExtractProteomeFromGFF.pm
cp lib/Bio/Roary/JobRunner/Parallel.pm blib/lib/Bio/Roary/JobRunner/Parallel.pm
cp lib/Bio/Roary/External/PostAnalysis.pm blib/lib/Bio/Roary/External/PostAnalysis.pm
cp lib/Bio/Roary/ExtractProteomeFromGFFs.pm blib/lib/Bio/Roary/ExtractProteomeFromGFFs.pm
cp lib/Bio/Roary/Output/BlastIdentityFrequency.pm blib/lib/Bio/Roary/Output/BlastIdentityFrequency.pm
cp lib/Bio/Roary/External/Mafft.pm blib/lib/Bio/Roary/External/Mafft.pm
cp lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm blib/lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
cp lib/Bio/Roary/GroupStatistics.pm blib/lib/Bio/Roary/GroupStatistics.pm
cp lib/Bio/Roary/External/Prank.pm blib/lib/Bio/Roary/External/Prank.pm
cp lib/Bio/Roary/FilterFullClusters.pm blib/lib/Bio/Roary/FilterFullClusters.pm
cp lib/Bio/Roary/External/Mcl.pm blib/lib/Bio/Roary/External/Mcl.pm
cp lib/Bio/Roary/Output/EmblGroups.pm blib/lib/Bio/Roary/Output/EmblGroups.pm
cp lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
cp lib/Bio/Roary/External/Makeblastdb.pm blib/lib/Bio/Roary/External/Makeblastdb.pm
cp lib/Bio/Roary/ParallelAllAgainstAllBlast.pm blib/lib/Bio/Roary/ParallelAllAgainstAllBlast.pm
cp lib/Bio/Roary/Output/QueryGroups.pm blib/lib/Bio/Roary/Output/QueryGroups.pm
cp lib/Bio/Roary/SortFasta.pm blib/lib/Bio/Roary/SortFasta.pm
cp lib/Bio/Roary/SampleOrder.pm blib/lib/Bio/Roary/SampleOrder.pm
cp lib/Bio/Roary/ParseGFFAnnotationRole.pm blib/lib/Bio/Roary/ParseGFFAnnotationRole.pm
cp lib/Bio/Roary/PresenceAbsenceMatrix.pm blib/lib/Bio/Roary/PresenceAbsenceMatrix.pm
cp lib/Bio/Roary/SequenceLengths.pm blib/lib/Bio/Roary/SequenceLengths.pm
cp lib/Bio/Roary/PostAnalysis.pm blib/lib/Bio/Roary/PostAnalysis.pm
cp lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
cp lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
cp lib/Bio/Roary/Output/GroupsMultifastaProtein.pm blib/lib/Bio/Roary/Output/GroupsMultifastaProtein.pm
cp lib/Bio/Roary/SpreadsheetRole.pm blib/lib/Bio/Roary/SpreadsheetRole.pm
cp lib/Bio/Roary/ReorderSpreadsheet.pm blib/lib/Bio/Roary/ReorderSpreadsheet.pm
cp lib/Bio/Roary/Output/GroupsMultifastas.pm blib/lib/Bio/Roary/Output/GroupsMultifastas.pm
cp lib/Bio/Roary/PrepareInputFiles.pm blib/lib/Bio/Roary/PrepareInputFiles.pm
cp lib/Bio/Roary/ReformatInputGFFs.pm blib/lib/Bio/Roary/ReformatInputGFFs.pm
cp lib/Bio/Roary/QC/Report.pm blib/lib/Bio/Roary/QC/Report.pm
cp lib/Bio/Roary/Output/NumberOfGroups.pm blib/lib/Bio/Roary/Output/NumberOfGroups.pm
cp lib/Bio/Roary/UniqueGenesPerSample.pm blib/lib/Bio/Roary/UniqueGenesPerSample.pm
cp lib/Bio/Roary/SplitGroups.pm blib/lib/Bio/Roary/SplitGroups.pm
cp bin/create_pan_genome blib/script/create_pan_genome
cp bin/create_pan_genome_plots blib/script/create_pan_genome_plots
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome_plots
cp bin/extract_proteome_from_gff blib/script/extract_proteome_from_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/extract_proteome_from_gff
cp bin/iterative_cdhit blib/script/iterative_cdhit
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/iterative_cdhit
cp bin/pan_genome_assembly_statistics blib/script/pan_genome_assembly_statistics
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_assembly_statistics
cp bin/pan_genome_core_alignment blib/script/pan_genome_core_alignment
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_core_alignment
cp bin/pan_genome_post_analysis blib/script/pan_genome_post_analysis
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_post_analysis
cp bin/pan_genome_reorder_spreadsheet blib/script/pan_genome_reorder_spreadsheet
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_reorder_spreadsheet
cp bin/parallel_all_against_all_blastp blib/script/parallel_all_against_all_blastp
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/parallel_all_against_all_blastp
cp bin/protein_alignment_from_nucleotides blib/script/protein_alignment_from_nucleotides
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/protein_alignment_from_nucleotides
cp bin/query_pan_genome blib/script/query_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/query_pan_genome
cp bin/roary blib/script/roary
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary
cp bin/roary-create_pan_genome_plots.R blib/script/roary-create_pan_genome_plots.R
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-create_pan_genome_plots.R
cp bin/roary-pan_genome_reorder_spreadsheet blib/script/roary-pan_genome_reorder_spreadsheet
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-pan_genome_reorder_spreadsheet
cp bin/roary-query_pan_genome blib/script/roary-query_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-query_pan_genome
cp bin/roary-unique_genes_per_sample blib/script/roary-unique_genes_per_sample
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-unique_genes_per_sample
cp bin/transfer_annotation_to_groups blib/script/transfer_annotation_to_groups
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/transfer_annotation_to_groups
Manifying 16 pod documents
Manifying 26 pod documents
Manifying 28 pod documents
Manifying 25 pod documents
make[1]: Leaving directory '/build/roary-6JKoJ0/roary-3.13.0+dfsg/.build/debian-build'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/roary-6JKoJ0/roary-3.13.0+dfsg'
# Hmmm, seems the test is not automatically run anyway by the build system
dh_auto_test || true
make[1]: Leaving directory '/build/roary-6JKoJ0/roary-3.13.0+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install -D .build/debian-build --destdir=debian/roary/
	cd .build/debian-build && make -j2 install DESTDIR=/build/roary-6JKoJ0/roary-3.13.0\+dfsg/debian/roary AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/roary-6JKoJ0/roary-3.13.0+dfsg/.build/debian-build'
Manifying 16 pod documents
Manifying 26 pod documents
Manifying 28 pod documents
Manifying 25 pod documents
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/LookupGeneFiles.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AnnotateGroups.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AccessoryClustering.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GroupStatistics.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/IterativeCdhit.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CombinedProteome.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ParallelAllAgainstAllBlast.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ReorderSpreadsheet.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ReformatInputGFFs.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ParseGFFAnnotationRole.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/UniqueGenesPerSample.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GroupLabels.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SortFasta.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/FilterFullClusters.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PresenceAbsenceMatrix.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SplitGroups.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ClustersRole.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PrepareInputFiles.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Exceptions.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SpreadsheetRole.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PostAnalysis.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/InflateClusters.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ChunkFastaFile.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AnalyseGroups.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/BedFromGFFRole.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ContigsToGeneIDsFromGFF.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/OrderGenes.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SampleOrder.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AssemblyStatistics.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AccessoryBinaryFasta.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SequenceLengths.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/MergeMultifastaAlignments.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/FilterUnknownsFromFasta.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Cdhit.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Mafft.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/IterativeCdhit.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Mcl.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Fasttree.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Blastp.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/CheckTools.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/PostAnalysis.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Makeblastdb.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Prank.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Local.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Parallel.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Role.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaProtein.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastas.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/EmblGroups.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupMultifasta.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/NumberOfGroups.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/EMBLHeaderCommon.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/QueryGroups.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/BlastIdentityFrequency.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/DifferenceBetweenSets.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/QC/Report.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/QueryRoary.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/IterativeCdhit.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Common.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Roary.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/AssemblyStatistics.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/CreatePanGenome.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-pan_genome_reorder_spreadsheet.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/extract_proteome_from_gff.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-unique_genes_per_sample.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/create_pan_genome.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/protein_alignment_from_nucleotides.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/query_pan_genome.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_post_analysis.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_reorder_spreadsheet.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/parallel_all_against_all_blastp.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/transfer_annotation_to_groups.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_assembly_statistics.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/iterative_cdhit.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/create_pan_genome_plots.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_core_alignment.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-query_pan_genome.1p
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupMultifasta.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ParseGFFAnnotationRole.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SampleOrder.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::QueryGroups.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::OrderGenes.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PostAnalysis.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PrepareInputFiles.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Parallel.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ReorderSpreadsheet.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::CheckTools.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::TransferAnnotationToGroups.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CombinedProteome.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::UniqueGenesPerSample.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AnnotateGroups.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Local.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Cdhit.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::QueryRoary.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AssemblyStatistics.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Roary.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::IterativeCdhit.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::QC::Report.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::LookupGeneFiles.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::FilterFullClusters.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AnalyseGroups.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GeneNamesFromGFF.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFF.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Makeblastdb.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GroupStatistics.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::BlastIdentityFrequency.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Exceptions.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::AssemblyStatistics.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::PostAnalysis.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ClustersRole.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::FilterUnknownsFromFasta.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Blastp.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::UniqueGenesPerSample.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastasNucleotide.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Fasttree.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractCoreGenesFromSpreadsheet.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::GeneAlignmentFromNucleotides.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SplitGroups.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaNucleotide.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryReorderSpreadsheet.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Role.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryPostAnalysis.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ParallelAllAgainstAllBlast.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::EmblGroups.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::MergeMultifastaAlignments.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ContigsToGeneIDsFromGFF.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::GeneAlignmentFromNucleotides.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastas.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::DifferenceBetweenSets.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryCoreAlignment.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::NumberOfGroups.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Prank.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaProtein.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SpreadsheetRole.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PresenceAbsenceMatrix.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Mafft.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ReformatInputGFFs.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SequenceLengths.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Common.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFFs.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Mcl.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ExtractProteomeFromGff.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::CreatePanGenome.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::IterativeCdhit.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::InflateClusters.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SortFasta.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::IterativeCdhit.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::BedFromGFFRole.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::EMBLHeaderCommon.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GroupLabels.3pm
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_post_analysis
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/iterative_cdhit
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_assembly_statistics
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/protein_alignment_from_nucleotides
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/roary
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-pan_genome_reorder_spreadsheet
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_core_alignment
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_reorder_spreadsheet
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/extract_proteome_from_gff
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/create_pan_genome
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/transfer_annotation_to_groups
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/parallel_all_against_all_blastp
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-create_pan_genome_plots.R
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-query_pan_genome
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-unique_genes_per_sample
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/query_pan_genome
Installing /build/roary-6JKoJ0/roary-3.13.0+dfsg/debian/roary/usr/bin/create_pan_genome_plots
make[1]: Leaving directory '/build/roary-6JKoJ0/roary-3.13.0+dfsg/.build/debian-build'
   debian/rules execute_after_dh_install
make[1]: Entering directory '/build/roary-6JKoJ0/roary-3.13.0+dfsg'
# debian policy 10.4
mv debian/roary/usr/bin/roary-create_pan_genome_plots.R debian/roary/usr/bin/roary-create_pan_genome_plots
make[1]: Leaving directory '/build/roary-6JKoJ0/roary-3.13.0+dfsg'
   dh_installdocs
   dh_installchangelogs
   dh_installexamples
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'roary' in '../roary_3.13.0+dfsg-2_all.deb'.
 dpkg-genbuildinfo -O../roary_3.13.0+dfsg-2_amd64.buildinfo
 dpkg-genchanges -O../roary_3.13.0+dfsg-2_amd64.changes
dpkg-genchanges: info: not including original source code in upload
 dpkg-source -Zxz --after-build .
dpkg-buildpackage: info: binary and diff upload (original source NOT included)
--------------------------------------------------------------------------------
Build finished at 2025-01-22T12:14:24Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                      Wed, 22 Jan 2025 12:14:24 +0000 |
+------------------------------------------------------------------------------+


roary_3.13.0+dfsg-2_amd64.changes:
----------------------------------

Format: 1.8
Date: Mon, 02 Dec 2024 23:00:41 +0530
Source: roary
Binary: roary
Architecture: source all
Version: 3.13.0+dfsg-2
Distribution: perl-5.40-throwaway
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Ananthu C V <weepingclown@disroot.org>
Description:
 roary      - high speed stand alone pan genome pipeline
Closes: 1047005 1049576
Changes:
 roary (3.13.0+dfsg-2) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * Team upload.
   * Use common naming scheme for autopkgtest scripts
   * Provide autopkgtest as user example
   * Standards-Version: 4.6.1 (routine-update)
   * debhelper-compat 13 (routine-update)
   * Add salsa-ci file (routine-update)
   * Rules-Requires-Root: no (routine-update)
   * Use secure URI in Homepage field.
   * Drop unneeded lintian-overrides
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
     Repository-Browse.
   * Add debug for "Cannot find the mcxdeblast executable, please ensure
     its in your PATH"
   * Fix autopkgtest
   * The missing mcxdeblast issue is gone
 .
   [ Ananthu C V ]
   * Move file to original place after build (Closes: #1047005, #1049576)
   * Remove language suffix from installed scripts
   * Bump standards version to 4.7.0 (no changes needed)
Checksums-Sha1:
 71cef04c0241443e7b8e5a13fd400586a3514bb7 1624 roary_3.13.0+dfsg-2.dsc
 d2845cda817077a90ae16f282ade21b25612ea0f 7308 roary_3.13.0+dfsg-2.debian.tar.xz
 40e590cf7179e54c0b82ea613f59d36e33188b5f 185016 roary_3.13.0+dfsg-2_all.deb
 8244cdf0ffd114adf71589247e9cdb31580fd094 14967 roary_3.13.0+dfsg-2_amd64.buildinfo
Checksums-Sha256:
 353dfaff486264b4979957ae0f9967257f7abe47e33febfb839791b95c8228c4 1624 roary_3.13.0+dfsg-2.dsc
 8eecf0867aba06a3aaf56ba0f2d21bb396aaa1ad1392defeeaf75f267830d7a6 7308 roary_3.13.0+dfsg-2.debian.tar.xz
 48fecc1e1f31e83140f775fb97e5c27e2de68cf48e05ee3341fa5cdc86397498 185016 roary_3.13.0+dfsg-2_all.deb
 e09ed1fbf9576d0b70244cbcb0f378fd888d103fb36ee27a5b11190ea7aeaf63 14967 roary_3.13.0+dfsg-2_amd64.buildinfo
Files:
 8001be1ed89575162299593ec7cfaf90 1624 science optional roary_3.13.0+dfsg-2.dsc
 d26aa7dcb13361bf384ee6dfd489df10 7308 science optional roary_3.13.0+dfsg-2.debian.tar.xz
 247652fdecd41717bda218c403fa60b1 185016 science optional roary_3.13.0+dfsg-2_all.deb
 b6ca1fb47e91da5675d2a5d64c7f9942 14967 science optional roary_3.13.0+dfsg-2_amd64.buildinfo

+------------------------------------------------------------------------------+
| Buildinfo                                    Wed, 22 Jan 2025 12:14:24 +0000 |
+------------------------------------------------------------------------------+

Format: 1.0
Source: roary
Binary: roary
Architecture: all source
Version: 3.13.0+dfsg-2
Checksums-Md5:
 8001be1ed89575162299593ec7cfaf90 1624 roary_3.13.0+dfsg-2.dsc
 247652fdecd41717bda218c403fa60b1 185016 roary_3.13.0+dfsg-2_all.deb
Checksums-Sha1:
 71cef04c0241443e7b8e5a13fd400586a3514bb7 1624 roary_3.13.0+dfsg-2.dsc
 40e590cf7179e54c0b82ea613f59d36e33188b5f 185016 roary_3.13.0+dfsg-2_all.deb
Checksums-Sha256:
 353dfaff486264b4979957ae0f9967257f7abe47e33febfb839791b95c8228c4 1624 roary_3.13.0+dfsg-2.dsc
 48fecc1e1f31e83140f775fb97e5c27e2de68cf48e05ee3341fa5cdc86397498 185016 roary_3.13.0+dfsg-2_all.deb
Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Wed, 22 Jan 2025 12:14:24 +0000
Build-Path: /build/roary-6JKoJ0/roary-3.13.0+dfsg
Build-Tainted-By:
 usr-local-has-programs
Installed-Build-Depends:
 autoconf (= 2.72-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.23.1-1),
 autotools-dev (= 20220109.1),
 base-files (= 13.6),
 base-passwd (= 3.6.6),
 bash (= 5.2.37-1),
 bedtools (= 2.31.1+dfsg-2),
 binutils (= 2.43.50.20250108-1),
 binutils-common (= 2.43.50.20250108-1),
 binutils-x86-64-linux-gnu (= 2.43.50.20250108-1),
 bioperl (= 1.7.8-1),
 bsdextrautils (= 2.40.4-1),
 bsdutils (= 1:2.40.4-1),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6),
 ca-certificates (= 20241223),
 cd-hit (= 4.8.1-4),
 coreutils (= 9.5-1+b1),
 cpp (= 4:14.2.0-1),
 cpp-13 (= 13.3.0-12),
 cpp-13-x86-64-linux-gnu (= 13.3.0-12),
 cpp-14 (= 14.2.0-14),
 cpp-14-x86-64-linux-gnu (= 14.2.0-14),
 cpp-x86-64-linux-gnu (= 4:14.2.0-1),
 dash (= 0.5.12-11),
 debconf (= 1.5.89),
 debhelper (= 13.24.1),
 debianutils (= 5.21),
 dh-autoreconf (= 20),
 dh-dist-zilla (= 1.4.1),
 dh-strip-nondeterminism (= 1.14.1-1),
 diffutils (= 1:3.10-2),
 dpkg (= 1.22.14),
 dpkg-dev (= 1.22.14),
 dwz (= 0.15-1+b1),
 fasttree (= 2.1.11-2),
 file (= 1:5.45-3+b1),
 findutils (= 4.10.0-3),
 fontconfig (= 2.15.0-2),
 fontconfig-config (= 2.15.0-2),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 g++ (= 4:14.2.0-1),
 g++-14 (= 14.2.0-14),
 g++-14-x86-64-linux-gnu (= 14.2.0-14),
 g++-x86-64-linux-gnu (= 4:14.2.0-1),
 gcc (= 4:14.2.0-1),
 gcc-13 (= 13.3.0-12),
 gcc-13-base (= 13.3.0-12),
 gcc-13-x86-64-linux-gnu (= 13.3.0-12),
 gcc-14 (= 14.2.0-14),
 gcc-14-base (= 14.2.0-14),
 gcc-14-x86-64-linux-gnu (= 14.2.0-14),
 gcc-x86-64-linux-gnu (= 4:14.2.0-1),
 gettext (= 0.23.1-1),
 gettext-base (= 0.23.1-1),
 grep (= 3.11-4),
 groff-base (= 1.23.0-7),
 gzip (= 1.13-1),
 hostname (= 3.25),
 init-system-helpers (= 1.68),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-2+b1),
 libalgorithm-c3-perl (= 0.11-2),
 libalgorithm-diff-perl (= 1.201-1),
 libaliased-perl (= 0.34-3),
 libapp-cmd-perl (= 0.337-2),
 libarchive-zip-perl (= 1.68-1),
 libarray-utils-perl (= 0.5-3),
 libasan8 (= 14.2.0-14),
 libatomic1 (= 14.2.0-14),
 libattr1 (= 1:2.5.2-2),
 libaudit-common (= 1:4.0.2-2),
 libaudit1 (= 1:4.0.2-2+b1),
 libautobox-perl (= 3.0.2-1+b1),
 libb-hooks-endofscope-perl (= 0.28-1),
 libb-hooks-op-check-perl (= 0.22-3+b2),
 libbinutils (= 2.43.50.20250108-1),
 libbio-perl-perl (= 1.7.8-1),
 libblas3 (= 3.12.0-4),
 libblkid1 (= 2.40.4-1),
 libbrotli1 (= 1.1.0-2+b6),
 libbz2-1.0 (= 1.0.8-6),
 libc-bin (= 2.40-5),
 libc-dev-bin (= 2.40-5),
 libc6 (= 2.40-5),
 libc6-dev (= 2.40-5),
 libcairo2 (= 1.18.2-2),
 libcap-ng0 (= 0.8.5-4),
 libcap2 (= 1:2.66-5+b1),
 libcapture-tiny-perl (= 0.48-2),
 libcarp-clan-perl (= 6.08-2),
 libcc1-0 (= 14.2.0-14),
 libclass-c3-perl (= 0.35-2),
 libclass-data-inheritable-perl (= 0.10-1),
 libclass-inspector-perl (= 1.36-3),
 libclass-load-perl (= 0.25-2),
 libclass-load-xs-perl (= 0.10-2+b4),
 libclass-method-modifiers-perl (= 2.15-1),
 libclass-singleton-perl (= 1.6-2),
 libclass-xsaccessor-perl (= 1.19-4+b5),
 libclone-perl (= 0.47-1+b1),
 libcom-err2 (= 1.47.2-1),
 libconfig-ini-perl (= 1:0.029-1),
 libconfig-mvp-perl (= 2.200013-1),
 libconfig-mvp-reader-ini-perl (= 2.101465-1),
 libconst-fast-perl (= 0.014-2),
 libcpan-uploader-perl (= 0.103018-1),
 libcpanel-json-xs-perl (= 4.39-1),
 libcrypt-dev (= 1:4.4.38-1),
 libcrypt1 (= 1:4.4.38-1),
 libctf-nobfd0 (= 2.43.50.20250108-1),
 libctf0 (= 2.43.50.20250108-1),
 libcurl4t64 (= 8.11.1-1+b1),
 libdata-compare-perl (= 1.29-1),
 libdata-optlist-perl (= 0.114-1),
 libdata-section-perl (= 0.200008-1),
 libdata-stag-perl (= 0.14-3),
 libdatetime-locale-perl (= 1:1.41-1),
 libdatetime-perl (= 2:1.65-1+b2),
 libdatetime-timezone-perl (= 1:2.64-1+2025a),
 libdatrie1 (= 0.2.13-3+b1),
 libdb5.3t64 (= 5.3.28+dfsg2-9),
 libdebconfclient0 (= 0.277),
 libdebhelper-perl (= 13.24.1),
 libdeflate0 (= 1.23-1+b1),
 libdevel-callchecker-perl (= 0.009-1+b1),
 libdevel-globaldestruction-perl (= 0.14-4),
 libdevel-overloadinfo-perl (= 0.007-1),
 libdevel-stacktrace-perl (= 2.0500-1),
 libdist-checkconflicts-perl (= 0.11-2),
 libdist-zilla-perl (= 6.032-1),
 libdist-zilla-plugin-podweaver-perl (= 4.010-1),
 libdpkg-perl (= 1.22.14),
 libdynaloader-functions-perl (= 0.004-1),
 libelf1t64 (= 0.192-4),
 libencode-locale-perl (= 1.05-3),
 libenv-path-perl (= 0.19-4),
 libeval-closure-perl (= 0.14-3),
 libexception-class-perl (= 1.45-1),
 libexpat1 (= 2.6.4-1),
 libexporter-tiny-perl (= 1.006002-1),
 libffi8 (= 3.4.6-1),
 libfile-chdir-perl (= 0.1008-1.2),
 libfile-copy-recursive-perl (= 0.45-4),
 libfile-find-rule-perl (= 0.34-3),
 libfile-grep-perl (= 0.02-3),
 libfile-listing-perl (= 6.16-1),
 libfile-pushd-perl (= 1.016-2),
 libfile-sharedir-install-perl (= 0.14-2),
 libfile-sharedir-perl (= 1.118-3),
 libfile-slurper-perl (= 0.014-1),
 libfile-stripnondeterminism-perl (= 1.14.1-1),
 libfile-which-perl (= 1.27-2),
 libfindbin-libs-perl (= 3.0.2-1),
 libfontconfig1 (= 2.15.0-2),
 libfreetype6 (= 2.13.3+dfsg-1),
 libfribidi0 (= 1.0.16-1),
 libgcc-13-dev (= 13.3.0-12),
 libgcc-14-dev (= 14.2.0-14),
 libgcc-s1 (= 14.2.0-14),
 libgdbm-compat4t64 (= 1.24-2),
 libgdbm6t64 (= 1.24-2),
 libgetopt-long-descriptive-perl (= 0.116-2),
 libgfortran5 (= 14.2.0-14),
 libglib2.0-0t64 (= 2.82.4-2),
 libgmp10 (= 2:6.3.0+dfsg-3),
 libgnutls30t64 (= 3.8.8-2),
 libgomp1 (= 14.2.0-14),
 libgprofng0 (= 2.43.50.20250108-1),
 libgraph-perl (= 1:0.9729-1),
 libgraph-readwrite-perl (= 2.10-1),
 libgraphite2-3 (= 1.3.14-2+b1),
 libgssapi-krb5-2 (= 1.21.3-4),
 libharfbuzz0b (= 10.2.0-1),
 libhash-merge-simple-perl (= 0.052-1),
 libheap-perl (= 0.80-5),
 libhogweed6t64 (= 3.10-1+b1),
 libhtml-parser-perl (= 3.83-1+b2),
 libhtml-tagset-perl (= 3.24-1),
 libhtml-tree-perl (= 5.07-3),
 libhttp-cookies-perl (= 6.11-1),
 libhttp-date-perl (= 6.06-1),
 libhttp-message-perl (= 7.00-2),
 libhttp-negotiate-perl (= 6.01-2),
 libhwasan0 (= 14.2.0-14),
 libice6 (= 2:1.1.1-1),
 libicu72 (= 72.1-6),
 libidn2-0 (= 2.3.7-2+b1),
 libimport-into-perl (= 1.002005-2),
 libio-all-perl (= 0.87-2),
 libio-html-perl (= 1.004-3),
 libio-socket-ssl-perl (= 2.089-1),
 libio-string-perl (= 1.08-4),
 libio-stringy-perl (= 2.113-2),
 libio-tiecombine-perl (= 1.005-3),
 libisl23 (= 0.27-1),
 libitm1 (= 14.2.0-14),
 libjansson4 (= 2.14-2+b3),
 libjbig0 (= 2.1-6.1+b2),
 libjpeg62-turbo (= 1:2.1.5-3+b1),
 libjson-maybexs-perl (= 1.004008-1),
 libjson-perl (= 4.10000-1),
 libk5crypto3 (= 1.21.3-4),
 libkeyutils1 (= 1.6.3-4),
 libkrb5-3 (= 1.21.3-4),
 libkrb5support0 (= 1.21.3-4),
 liblapack3 (= 3.12.0-4),
 libldap2 (= 2.6.9+dfsg-1),
 liblerc4 (= 4.0.0+ds-5),
 liblist-moreutils-perl (= 0.430-2),
 liblist-moreutils-xs-perl (= 0.430-4+b2),
 liblmdb0 (= 0.9.31-1+b2),
 liblog-dispatch-array-perl (= 1.005-1),
 liblog-dispatch-perl (= 2.71-1),
 liblog-dispatchouli-perl (= 3.008-1),
 liblog-log4perl-perl (= 1.57-1),
 liblsan0 (= 14.2.0-14),
 liblwp-mediatypes-perl (= 6.04-2),
 liblwp-protocol-https-perl (= 6.14-1),
 liblzma5 (= 5.6.3-1+b1),
 libmagic-mgc (= 1:5.45-3+b1),
 libmagic1t64 (= 1:5.45-3+b1),
 libmbedcrypto16 (= 3.6.2-3),
 libmbedtls21 (= 3.6.2-3),
 libmbedx509-7 (= 3.6.2-3),
 libmd0 (= 1.1.0-2+b1),
 libmixin-linewise-perl (= 0.111-1),
 libmodule-implementation-perl (= 0.09-2),
 libmodule-path-perl (= 0.19-3),
 libmodule-pluggable-perl (= 5.2-5),
 libmodule-runtime-conflicts-perl (= 0.003-2),
 libmodule-runtime-perl (= 0.016-2),
 libmoo-perl (= 2.005005-1),
 libmoose-autobox-perl (= 0.16-2),
 libmoose-perl (= 2.2207-1+b3),
 libmoosex-lazyrequire-perl (= 0.11-2),
 libmoosex-oneargnew-perl (= 0.007-1),
 libmoosex-role-parameterized-perl (= 1.11-2),
 libmoosex-setonce-perl (= 0.200002-2),
 libmoosex-types-perl (= 0.50-2),
 libmoosex-types-perl-perl (= 0.101344-1),
 libmount1 (= 2.40.4-1),
 libmpc3 (= 1.3.1-1+b3),
 libmpfr6 (= 4.2.1-1+b2),
 libmro-compat-perl (= 0.15-2),
 libnamespace-autoclean-perl (= 0.31-1),
 libnamespace-clean-perl (= 0.27-2),
 libncursesw6 (= 6.5-2+b1),
 libnet-http-perl (= 6.23-1),
 libnet-ssleay-perl (= 1.94-2),
 libnettle8t64 (= 3.10-1+b1),
 libnghttp2-14 (= 1.64.0-1),
 libnumber-compare-perl (= 0.03-3),
 libp11-kit0 (= 0.25.5-3),
 libpackage-deprecationmanager-perl (= 0.18-1),
 libpackage-stash-perl (= 0.40-1),
 libpackage-stash-xs-perl (= 0.30-1+b4),
 libpadwalker-perl (= 2.5-1+b6),
 libpam-modules (= 1.5.3-7+b1),
 libpam-modules-bin (= 1.5.3-7+b1),
 libpam-runtime (= 1.5.3-7),
 libpam0g (= 1.5.3-7+b1),
 libpango-1.0-0 (= 1.56.1-1),
 libpangocairo-1.0-0 (= 1.56.1-1),
 libpangoft2-1.0-0 (= 1.56.1-1),
 libpaper-utils (= 2.2.5-0.3),
 libpaper2 (= 2.2.5-0.3),
 libparams-classify-perl (= 0.015-2+b4),
 libparams-util-perl (= 1.102-3+b1),
 libparams-validate-perl (= 1.31-2+b3),
 libparams-validationcompiler-perl (= 0.31-1),
 libparse-yapp-perl (= 1.21-4),
 libpath-tiny-perl (= 0.146-1),
 libpcre2-8-0 (= 10.44-5),
 libperl-prereqscanner-perl (= 1.100-1),
 libperl-version-perl (= 1.017-1),
 libperl5.40 (= 5.40.1-1),
 libperlio-utf8-strict-perl (= 0.010-1+b3),
 libpipeline1 (= 1.5.8-1),
 libpixman-1-0 (= 0.44.0-3),
 libpng16-16t64 (= 1.6.45-1),
 libpod-elemental-perl (= 0.103006-1),
 libpod-elemental-perlmunger-perl (= 0.200007-1),
 libpod-eventual-perl (= 0.094003-1),
 libpod-weaver-perl (= 4.020-1),
 libppi-perl (= 1.281-1),
 libproc2-0 (= 2:4.0.4-6),
 libpsl5t64 (= 0.21.2-1.1+b1),
 libpython3-stdlib (= 3.13.1-2),
 libpython3.13-minimal (= 3.13.1-3),
 libpython3.13-stdlib (= 3.13.1-3),
 libquadmath0 (= 14.2.0-14),
 libreadline8t64 (= 8.2-6),
 librole-hasmessage-perl (= 0.007-1),
 librole-identifiable-perl (= 0.009-1),
 librole-tiny-perl (= 2.002004-1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5),
 libsafe-isa-perl (= 1.000010-1),
 libsasl2-2 (= 2.1.28+dfsg1-8+b1),
 libsasl2-modules-db (= 2.1.28+dfsg1-8+b1),
 libscope-guard-perl (= 0.21-2),
 libseccomp2 (= 2.5.5-2),
 libselinux1 (= 3.7-3+b1),
 libsensors-config (= 1:3.6.0-10),
 libsensors5 (= 1:3.6.0-10+b1),
 libset-object-perl (= 1.42-1+b5),
 libsframe1 (= 2.43.50.20250108-1),
 libsharpyuv0 (= 1.5.0-0.1),
 libsm6 (= 2:1.2.4-1),
 libsmartcols1 (= 2.40.4-1),
 libsoftware-license-perl (= 0.104006-1),
 libspecio-perl (= 0.49-1),
 libspiffy-perl (= 0.46-1),
 libsqlite3-0 (= 3.46.1-1),
 libssh2-1t64 (= 1.11.1-1),
 libssl3t64 (= 3.4.0-2),
 libstdc++-14-dev (= 14.2.0-14),
 libstdc++6 (= 14.2.0-14),
 libstring-errf-perl (= 0.009-1),
 libstring-flogger-perl (= 1.101246-1),
 libstring-formatter-perl (= 1.235-1),
 libstring-rewriteprefix-perl (= 0.009-1),
 libstring-truncate-perl (= 1.100603-1),
 libsub-exporter-formethods-perl (= 0.100055-1),
 libsub-exporter-globexporter-perl (= 0.006-1),
 libsub-exporter-perl (= 0.990-1),
 libsub-exporter-progressive-perl (= 0.001013-3),
 libsub-identify-perl (= 0.14-3+b3),
 libsub-install-perl (= 0.929-1),
 libsub-name-perl (= 0.28-1),
 libsub-quote-perl (= 2.006008-1),
 libsub-uplevel-perl (= 0.2800-3),
 libsyntax-keyword-junction-perl (= 0.003009-1),
 libsystemd0 (= 257.2-2),
 libtask-weaken-perl (= 1.06-2),
 libtasn1-6 (= 4.19.0-3+b3),
 libtcl8.6 (= 8.6.16+dfsg-1),
 libterm-encoding-perl (= 0.03-2),
 libterm-readkey-perl (= 2.38-2+b4),
 libtest-deep-perl (= 1.204-1),
 libtest-differences-perl (= 0.71-1),
 libtest-exception-perl (= 0.43-3),
 libtest-file-perl (= 1.994-1),
 libtest-files-perl (= 0.26-1),
 libtest-most-perl (= 0.38-1),
 libtest-output-perl (= 1.035-1),
 libtest-warn-perl (= 0.37-2),
 libtest2-suite-perl (= 0.000163-1),
 libtext-charwidth-perl (= 0.04-11+b4),
 libtext-csv-perl (= 2.05-1),
 libtext-diff-perl (= 1.45-2),
 libtext-glob-perl (= 0.11-3),
 libtext-template-perl (= 1.61-1),
 libtext-wrapi18n-perl (= 0.06-10),
 libthai-data (= 0.1.29-2),
 libthai0 (= 0.1.29-2+b1),
 libthrowable-perl (= 1.001-2),
 libtie-ixhash-perl (= 1.23-4),
 libtiff6 (= 4.5.1+git230720-5),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.5-2+b1),
 libtingea0 (= 21-361-2+b2),
 libtirpc-common (= 1.3.4+ds-1.3),
 libtirpc3t64 (= 1.3.4+ds-1.3+b1),
 libtk8.6 (= 8.6.16-1),
 libtool (= 2.5.4-2),
 libtry-tiny-perl (= 0.32-1),
 libtsan2 (= 14.2.0-14),
 libtype-tiny-perl (= 2.004000-1),
 libubsan1 (= 14.2.0-14),
 libuchardet0 (= 0.0.8-1+b2),
 libudev1 (= 257.2-2),
 libunistring5 (= 1.3-1),
 liburi-perl (= 5.30-1),
 libuuid1 (= 2.40.4-1),
 libuv1t64 (= 1.48.0-7),
 libvariable-magic-perl (= 0.64-1+b1),
 libwebp7 (= 1.5.0-0.1),
 libwww-perl (= 6.77-1),
 libwww-robotrules-perl (= 6.02-1),
 libx11-6 (= 2:1.8.10-2),
 libx11-data (= 2:1.8.10-2),
 libxau6 (= 1:1.0.11-1),
 libxcb-render0 (= 1.17.0-2+b1),
 libxcb-shm0 (= 1.17.0-2+b1),
 libxcb1 (= 1.17.0-2+b1),
 libxdmcp6 (= 1:1.1.5-1),
 libxext6 (= 2:1.3.4-1+b3),
 libxft2 (= 2.3.6-1+b3),
 libxml-parser-perl (= 2.47-1+b3),
 libxml-writer-perl (= 0.900-2),
 libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
 libxrender1 (= 1:0.9.10-1.1+b3),
 libxss1 (= 1:1.2.3-1+b3),
 libxstring-perl (= 0.005-2+b4),
 libxt6t64 (= 1:1.2.1-1.2+b2),
 libyaml-pp-perl (= 0.38.0-1),
 libyaml-tiny-perl (= 1.76-1),
 libzstd1 (= 1.5.6+dfsg-2),
 linux-libc-dev (= 6.12.10-1),
 m4 (= 1.4.19-5),
 mafft (= 7.505-1),
 make (= 4.4.1-1),
 man-db (= 2.13.0-1),
 mawk (= 1.3.4.20240905-1),
 mcl (= 1:22-282+ds-3),
 media-types (= 10.1.0),
 ncbi-blast+ (= 2.16.0+ds-6+b1),
 ncbi-data (= 6.1.20170106+dfsg2-5),
 ncurses-base (= 6.5-2),
 ncurses-bin (= 6.5-2+b1),
 netbase (= 6.4),
 openssl (= 3.4.0-2),
 openssl-provider-legacy (= 3.4.0-2),
 parallel (= 20240222+ds-2),
 patch (= 2.7.6-7),
 perl (= 5.40.1-1),
 perl-base (= 5.40.1-1),
 perl-modules-5.40 (= 5.40.1-1),
 perl-openssl-defaults (= 7+b2),
 po-debconf (= 1.0.21+nmu1),
 prank (= 0.0.170427+dfsg-3),
 procps (= 2:4.0.4-6),
 python3 (= 3.13.1-2),
 python3-minimal (= 3.13.1-2),
 python3.13 (= 3.13.1-3),
 python3.13-minimal (= 3.13.1-3),
 r-base-core (= 4.4.2-1),
 readline-common (= 8.2-6),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.24),
 sysstat (= 12.7.5-2),
 sysvinit-utils (= 3.13-1),
 tar (= 1.35+dfsg-3.1),
 tzdata (= 2025a-1),
 ucf (= 3.0048),
 unzip (= 6.0-28),
 util-linux (= 2.40.4-1),
 x11-common (= 1:7.7+23.2),
 xdg-utils (= 1.2.1-2),
 xz-utils (= 5.6.3-1+b1),
 zip (= 3.0-14),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
 DEB_BUILD_OPTIONS="parallel=2"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 LD_LIBRARY_PATH="/usr/lib/libeatmydata"
 SOURCE_DATE_EPOCH="1733160641"


+------------------------------------------------------------------------------+
| Package contents                             Wed, 22 Jan 2025 12:14:24 +0000 |
+------------------------------------------------------------------------------+


roary_3.13.0+dfsg-2_all.deb
---------------------------

 new Debian package, version 2.0.
 size 185016 bytes: control archive=6356 bytes.
    1490 bytes,    19 lines      control
   17638 bytes,   204 lines      md5sums
 Package: roary
 Version: 3.13.0+dfsg-2
 Architecture: all
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 732
 Depends: perl:any, bioperl (>= 1.7.4), libarray-utils-perl, libdigest-md5-file-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree
 Section: science
 Priority: optional
 Homepage: https://sanger-pathogens.github.io/Roary/
 Description: high speed stand alone pan genome pipeline
  Roary is a high speed stand alone pan genome pipeline, which takes annotated
  assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates
  the pan genome. Using a standard desktop PC, it can analyse datasets with
  thousands of samples, something which is computationally infeasible with
  existing methods, without compromising the quality of the results. 128 samples
  can be analysed in under 1 hour using 1 GB of RAM and a single processor.
  To perform this analysis using existing methods would take weeks and hundreds
  of GB of RAM. Roary is not intended for meta-genomics or for comparing
  extremely diverse sets of genomes.

drwxr-xr-x root/root         0 2024-12-02 17:30 ./
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/bin/
-rwxr-xr-x root/root       969 2024-12-02 17:30 ./usr/bin/create_pan_genome
-rwxr-xr-x root/root      3198 2024-12-02 17:30 ./usr/bin/create_pan_genome_plots
-rwxr-xr-x root/root       950 2024-12-02 17:30 ./usr/bin/extract_proteome_from_gff
-rwxr-xr-x root/root       839 2024-12-02 17:30 ./usr/bin/iterative_cdhit
-rwxr-xr-x root/root      1043 2024-12-02 17:30 ./usr/bin/pan_genome_assembly_statistics
-rwxr-xr-x root/root      1157 2024-12-02 17:30 ./usr/bin/pan_genome_core_alignment
-rwxr-xr-x root/root       934 2024-12-02 17:30 ./usr/bin/pan_genome_post_analysis
-rwxr-xr-x root/root      1042 2024-12-02 17:30 ./usr/bin/pan_genome_reorder_spreadsheet
-rwxr-xr-x root/root      1030 2024-12-02 17:30 ./usr/bin/parallel_all_against_all_blastp
-rwxr-xr-x root/root      1109 2024-12-02 17:30 ./usr/bin/protein_alignment_from_nucleotides
-rwxr-xr-x root/root       983 2024-12-02 17:30 ./usr/bin/query_pan_genome
-rwxr-xr-x root/root       848 2024-12-02 17:30 ./usr/bin/roary
-rwxr-xr-x root/root      2832 2024-12-02 17:30 ./usr/bin/roary-create_pan_genome_plots
-rwxr-xr-x root/root      1042 2024-12-02 17:30 ./usr/bin/roary-pan_genome_reorder_spreadsheet
-rwxr-xr-x root/root       983 2024-12-02 17:30 ./usr/bin/roary-query_pan_genome
-rwxr-xr-x root/root      1127 2024-12-02 17:30 ./usr/bin/roary-unique_genes_per_sample
-rwxr-xr-x root/root      1097 2024-12-02 17:30 ./usr/bin/transfer_annotation_to_groups
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/doc/roary/
-rw-r--r-- root/root       278 2024-12-02 16:03 ./usr/share/doc/roary/README.test
-rw-r--r-- root/root       957 2024-12-02 17:30 ./usr/share/doc/roary/changelog.Debian.gz
-rw-r--r-- root/root     10620 2019-11-06 10:55 ./usr/share/doc/roary/changelog.gz
-rw-r--r-- root/root      1058 2024-12-02 16:03 ./usr/share/doc/roary/copyright
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/doc/roary/examples/
-rw-r--r-- root/root     15083 2019-11-06 10:55 ./usr/share/doc/roary/examples/genbank1.gff
-rw-r--r-- root/root      2444 2019-11-06 10:55 ./usr/share/doc/roary/examples/genbank1.gff.proteome.faa.expected
-rw-r--r-- root/root     18667 2019-11-06 10:55 ./usr/share/doc/roary/examples/genbank2.gff
-rw-r--r-- root/root      1355 2019-11-06 10:55 ./usr/share/doc/roary/examples/genbank2.gff.proteome.faa.expected
-rw-r--r-- root/root     18665 2019-11-06 10:55 ./usr/share/doc/roary/examples/genbank3.gff
-rw-r--r-- root/root      1355 2019-11-06 10:55 ./usr/share/doc/roary/examples/genbank3.gff.proteome.faa.expected
-rw-r--r-- root/root      1720 2019-11-06 10:55 ./usr/share/doc/roary/examples/genbank_gene_presence_absence.csv
-rw-r--r-- root/root       502 2024-12-02 16:03 ./usr/share/doc/roary/expected_files.out
-rw-r--r-- root/root       511 2024-12-02 16:59 ./usr/share/doc/roary/run-unit-test
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/man/
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/man/man1/
-rw-r--r-- root/root      1107 2024-12-02 17:30 ./usr/share/man/man1/create_pan_genome.1p.gz
-rw-r--r-- root/root      1066 2024-12-02 17:30 ./usr/share/man/man1/create_pan_genome_plots.1p.gz
-rw-r--r-- root/root      1106 2024-12-02 17:30 ./usr/share/man/man1/extract_proteome_from_gff.1p.gz
-rw-r--r-- root/root      1079 2024-12-02 17:30 ./usr/share/man/man1/iterative_cdhit.1p.gz
-rw-r--r-- root/root      1135 2024-12-02 17:30 ./usr/share/man/man1/pan_genome_assembly_statistics.1p.gz
-rw-r--r-- root/root      1155 2024-12-02 17:30 ./usr/share/man/man1/pan_genome_core_alignment.1p.gz
-rw-r--r-- root/root      1104 2024-12-02 17:30 ./usr/share/man/man1/pan_genome_post_analysis.1p.gz
-rw-r--r-- root/root      1120 2024-12-02 17:30 ./usr/share/man/man1/pan_genome_reorder_spreadsheet.1p.gz
-rw-r--r-- root/root      1122 2024-12-02 17:30 ./usr/share/man/man1/parallel_all_against_all_blastp.1p.gz
-rw-r--r-- root/root      1149 2024-12-02 17:30 ./usr/share/man/man1/protein_alignment_from_nucleotides.1p.gz
-rw-r--r-- root/root      1113 2024-12-02 17:30 ./usr/share/man/man1/query_pan_genome.1p.gz
-rw-r--r-- root/root      1127 2024-12-02 17:30 ./usr/share/man/man1/roary-pan_genome_reorder_spreadsheet.1p.gz
-rw-r--r-- root/root      1119 2024-12-02 17:30 ./usr/share/man/man1/roary-query_pan_genome.1p.gz
-rw-r--r-- root/root      1149 2024-12-02 17:30 ./usr/share/man/man1/roary-unique_genes_per_sample.1p.gz
-rw-r--r-- root/root      1082 2024-12-02 17:30 ./usr/share/man/man1/roary.1p.gz
-rw-r--r-- root/root      1128 2024-12-02 17:30 ./usr/share/man/man1/transfer_annotation_to_groups.1p.gz
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/man/man3/
-rw-r--r-- root/root      1070 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary.3pm.gz
-rw-r--r-- root/root      1247 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm.gz
-rw-r--r-- root/root      1234 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm.gz
-rw-r--r-- root/root      1212 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::AnalyseGroups.3pm.gz
-rw-r--r-- root/root      1242 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::AnnotateGroups.3pm.gz
-rw-r--r-- root/root      1112 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::AssemblyStatistics.3pm.gz
-rw-r--r-- root/root      1114 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::BedFromGFFRole.3pm.gz
-rw-r--r-- root/root      1185 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm.gz
-rw-r--r-- root/root      1103 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::ClustersRole.3pm.gz
-rw-r--r-- root/root      1287 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CombinedProteome.3pm.gz
-rw-r--r-- root/root      1122 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::AssemblyStatistics.3pm.gz
-rw-r--r-- root/root      1104 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::Common.3pm.gz
-rw-r--r-- root/root      1110 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::CreatePanGenome.3pm.gz
-rw-r--r-- root/root      1111 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::ExtractProteomeFromGff.3pm.gz
-rw-r--r-- root/root      1162 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::GeneAlignmentFromNucleotides.3pm.gz
-rw-r--r-- root/root      1089 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::IterativeCdhit.3pm.gz
-rw-r--r-- root/root      1122 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp.3pm.gz
-rw-r--r-- root/root      1117 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::QueryRoary.3pm.gz
-rw-r--r-- root/root      1100 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::Roary.3pm.gz
-rw-r--r-- root/root      1144 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::RoaryCoreAlignment.3pm.gz
-rw-r--r-- root/root      1101 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::RoaryPostAnalysis.3pm.gz
-rw-r--r-- root/root      1112 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::RoaryReorderSpreadsheet.3pm.gz
-rw-r--r-- root/root      1127 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::TransferAnnotationToGroups.3pm.gz
-rw-r--r-- root/root      1140 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::CommandLine::UniqueGenesPerSample.3pm.gz
-rw-r--r-- root/root      1195 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::ContigsToGeneIDsFromGFF.3pm.gz
-rw-r--r-- root/root      1075 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Exceptions.3pm.gz
-rw-r--r-- root/root      1254 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::Blastp.3pm.gz
-rw-r--r-- root/root      1186 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::Cdhit.3pm.gz
-rw-r--r-- root/root      1195 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::CheckTools.3pm.gz
-rw-r--r-- root/root      1188 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::Fasttree.3pm.gz
-rw-r--r-- root/root      1247 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::GeneAlignmentFromNucleotides.3pm.gz
-rw-r--r-- root/root      1205 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::IterativeCdhit.3pm.gz
-rw-r--r-- root/root      1197 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::Mafft.3pm.gz
-rw-r--r-- root/root      1264 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::Makeblastdb.3pm.gz
-rw-r--r-- root/root      1221 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::Mcl.3pm.gz
-rw-r--r-- root/root      1159 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::PostAnalysis.3pm.gz
-rw-r--r-- root/root      1204 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::External::Prank.3pm.gz
-rw-r--r-- root/root      1207 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::ExtractCoreGenesFromSpreadsheet.3pm.gz
-rw-r--r-- root/root      1189 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFF.3pm.gz
-rw-r--r-- root/root      1195 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFFs.3pm.gz
-rw-r--r-- root/root      1251 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::FilterFullClusters.3pm.gz
-rw-r--r-- root/root      1196 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::FilterUnknownsFromFasta.3pm.gz
-rw-r--r-- root/root      1180 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::GeneNamesFromGFF.3pm.gz
-rw-r--r-- root/root      1165 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::GroupLabels.3pm.gz
-rw-r--r-- root/root      1200 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::GroupStatistics.3pm.gz
-rw-r--r-- root/root      1212 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::InflateClusters.3pm.gz
-rw-r--r-- root/root      1250 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::IterativeCdhit.3pm.gz
-rw-r--r-- root/root      1178 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::JobRunner::Local.3pm.gz
-rw-r--r-- root/root      1201 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::JobRunner::Parallel.3pm.gz
-rw-r--r-- root/root      1104 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::JobRunner::Role.3pm.gz
-rw-r--r-- root/root      1237 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::LookupGeneFiles.3pm.gz
-rw-r--r-- root/root      1251 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::MergeMultifastaAlignments.3pm.gz
-rw-r--r-- root/root      1223 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::OrderGenes.3pm.gz
-rw-r--r-- root/root      1218 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::BlastIdentityFrequency.3pm.gz
-rw-r--r-- root/root      1332 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL.3pm.gz
-rw-r--r-- root/root      1279 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::DifferenceBetweenSets.3pm.gz
-rw-r--r-- root/root      1119 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::EMBLHeaderCommon.3pm.gz
-rw-r--r-- root/root      1226 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::EmblGroups.3pm.gz
-rw-r--r-- root/root      1206 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::GroupMultifasta.3pm.gz
-rw-r--r-- root/root      1224 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaNucleotide.3pm.gz
-rw-r--r-- root/root      1200 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaProtein.3pm.gz
-rw-r--r-- root/root      1211 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::GroupsMultifastas.3pm.gz
-rw-r--r-- root/root      1240 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::GroupsMultifastasNucleotide.3pm.gz
-rw-r--r-- root/root      1201 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::NumberOfGroups.3pm.gz
-rw-r--r-- root/root      1188 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::Output::QueryGroups.3pm.gz
-rw-r--r-- root/root      1191 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::ParallelAllAgainstAllBlast.3pm.gz
-rw-r--r-- root/root      1105 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::ParseGFFAnnotationRole.3pm.gz
-rw-r--r-- root/root      1090 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::PostAnalysis.3pm.gz
-rw-r--r-- root/root      1200 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::PrepareInputFiles.3pm.gz
-rw-r--r-- root/root      1330 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::PresenceAbsenceMatrix.3pm.gz
-rw-r--r-- root/root      1082 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::QC::Report.3pm.gz
-rw-r--r-- root/root      1220 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::ReformatInputGFFs.3pm.gz
-rw-r--r-- root/root      1198 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::ReorderSpreadsheet.3pm.gz
-rw-r--r-- root/root      1190 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::SampleOrder.3pm.gz
-rw-r--r-- root/root      1193 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::SequenceLengths.3pm.gz
-rw-r--r-- root/root      1169 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::SortFasta.3pm.gz
-rw-r--r-- root/root      1082 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::SplitGroups.3pm.gz
-rw-r--r-- root/root      1089 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::SpreadsheetRole.3pm.gz
-rw-r--r-- root/root      1232 2024-12-02 17:30 ./usr/share/man/man3/Bio::Roary::UniqueGenesPerSample.3pm.gz
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/perl5/
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/perl5/Bio/
-rw-r--r-- root/root      7303 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary.pm
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/
-rw-r--r-- root/root      4509 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/AccessoryBinaryFasta.pm
-rw-r--r-- root/root      3875 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/AccessoryClustering.pm
-rw-r--r-- root/root      4041 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/AnalyseGroups.pm
-rw-r--r-- root/root     12185 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/AnnotateGroups.pm
-rw-r--r-- root/root      8624 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/AssemblyStatistics.pm
-rw-r--r-- root/root      2433 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/BedFromGFFRole.pm
-rw-r--r-- root/root      3048 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/ChunkFastaFile.pm
-rw-r--r-- root/root      2162 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/ClustersRole.pm
-rw-r--r-- root/root      1924 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CombinedProteome.pm
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/
-rw-r--r-- root/root      4578 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/AssemblyStatistics.pm
-rw-r--r-- root/root      1431 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/Common.pm
-rw-r--r-- root/root      3261 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/CreatePanGenome.pm
-rw-r--r-- root/root      4511 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
-rw-r--r-- root/root      4925 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
-rw-r--r-- root/root      5729 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/IterativeCdhit.pm
-rw-r--r-- root/root      5312 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
-rw-r--r-- root/root     10262 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/QueryRoary.pm
-rw-r--r-- root/root     17186 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/Roary.pm
-rw-r--r-- root/root      6129 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
-rw-r--r-- root/root     11279 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
-rw-r--r-- root/root      4606 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
-rw-r--r-- root/root      3575 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
-rw-r--r-- root/root      3319 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
-rw-r--r-- root/root      4649 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/ContigsToGeneIDsFromGFF.pm
-rw-r--r-- root/root       808 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Exceptions.pm
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/
-rw-r--r-- root/root      2400 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/Blastp.pm
-rw-r--r-- root/root      3745 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/Cdhit.pm
-rw-r--r-- root/root      6101 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/CheckTools.pm
-rw-r--r-- root/root      2446 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/Fasttree.pm
-rw-r--r-- root/root      5144 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
-rw-r--r-- root/root      3137 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/IterativeCdhit.pm
-rw-r--r-- root/root      2151 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/Mafft.pm
-rw-r--r-- root/root      2571 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/Makeblastdb.pm
-rw-r--r-- root/root      3544 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/Mcl.pm
-rw-r--r-- root/root      6984 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/PostAnalysis.pm
-rw-r--r-- root/root      2295 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/External/Prank.pm
-rw-r--r-- root/root      7266 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
-rw-r--r-- root/root      7411 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm
-rw-r--r-- root/root      3500 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm
-rw-r--r-- root/root      4668 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/FilterFullClusters.pm
-rw-r--r-- root/root      2967 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/FilterUnknownsFromFasta.pm
-rw-r--r-- root/root      2836 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm
-rw-r--r-- root/root      2091 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/GroupLabels.pm
-rw-r--r-- root/root      9068 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/GroupStatistics.pm
-rw-r--r-- root/root      3531 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/InflateClusters.pm
-rw-r--r-- root/root      4815 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/IterativeCdhit.pm
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/JobRunner/
-rw-r--r-- root/root      1756 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/JobRunner/Local.pm
-rw-r--r-- root/root      2194 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/JobRunner/Parallel.pm
-rw-r--r-- root/root      2149 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/JobRunner/Role.pm
-rw-r--r-- root/root      1801 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/LookupGeneFiles.pm
-rw-r--r-- root/root      4852 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/MergeMultifastaAlignments.pm
-rw-r--r-- root/root     15679 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/OrderGenes.pm
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/
-rw-r--r-- root/root      2166 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/BlastIdentityFrequency.pm
-rw-r--r-- root/root      3610 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
-rw-r--r-- root/root      4451 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/DifferenceBetweenSets.pm
-rw-r--r-- root/root      1529 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/EMBLHeaderCommon.pm
-rw-r--r-- root/root     10038 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/EmblGroups.pm
-rw-r--r-- root/root      2539 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/GroupMultifasta.pm
-rw-r--r-- root/root      7217 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
-rw-r--r-- root/root      2516 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/GroupsMultifastaProtein.pm
-rw-r--r-- root/root      1937 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/GroupsMultifastas.pm
-rw-r--r-- root/root      3808 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
-rw-r--r-- root/root      5122 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/NumberOfGroups.pm
-rw-r--r-- root/root      5135 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/Output/QueryGroups.pm
-rw-r--r-- root/root      5735 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/ParallelAllAgainstAllBlast.pm
-rw-r--r-- root/root      1377 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/ParseGFFAnnotationRole.pm
-rw-r--r-- root/root     15494 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/PostAnalysis.pm
-rw-r--r-- root/root      5886 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/PrepareInputFiles.pm
-rw-r--r-- root/root      3541 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/PresenceAbsenceMatrix.pm
drwxr-xr-x root/root         0 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/QC/
-rw-r--r-- root/root      6752 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/QC/Report.pm
-rw-r--r-- root/root      7171 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/ReformatInputGFFs.pm
-rw-r--r-- root/root      4407 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/ReorderSpreadsheet.pm
-rw-r--r-- root/root      1766 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/SampleOrder.pm
-rw-r--r-- root/root      1599 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/SequenceLengths.pm
-rw-r--r-- root/root      4493 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/SortFasta.pm
-rw-r--r-- root/root      8854 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/SplitGroups.pm
-rw-r--r-- root/root      2329 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/SpreadsheetRole.pm
-rw-r--r-- root/root      2909 2024-12-02 17:30 ./usr/share/perl5/Bio/Roary/UniqueGenesPerSample.pm


+------------------------------------------------------------------------------+
| Post Build                                   Wed, 22 Jan 2025 12:14:24 +0000 |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                      Wed, 22 Jan 2025 12:14:24 +0000 |
+------------------------------------------------------------------------------+

Purging /build/roary-6JKoJ0
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                      Wed, 22 Jan 2025 12:14:26 +0000 |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: full
Build-Space: 10420
Build-Time: 34
Distribution: perl-5.40-throwaway
Host Architecture: amd64
Install-Time: 25
Job: /srv/debomatic/incoming/roary_3.13.0+dfsg-2.dsc
Machine Architecture: amd64
Package: roary
Package-Time: 67
Source-Version: 3.13.0+dfsg-2
Space: 10420
Status: successful
Version: 3.13.0+dfsg-2
--------------------------------------------------------------------------------
Finished at 2025-01-22T12:14:24Z
Build needed 00:01:07, 10420k disk space