sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk

+==============================================================================+
| roary 3.13.0+dfsg-1 (amd64)                  Tue, 06 Aug 2024 07:48:11 +0000 |
+==============================================================================+

Package: roary
Version: 3.13.0+dfsg-1
Source Version: 3.13.0+dfsg-1
Distribution: perl-5.40-throwaway
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: full

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-13cd45eb-64cf-467d-9927-7743f1ee22c0' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup roary_3.13.0+dfsg-1 perl-5.40-throwaway amd64
--------------------------------------------------------------------------------------------------------------------


I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup roary_3.13.0+dfsg-1 perl-5.40-throwaway amd64'.

Finished processing commands.
--------------------------------------------------------------------------------
I: NOTICE: Log filtering will replace 'build/roary-7zkoJ8/resolver-ke5RPw' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B]
Hit:2 http://deb.debian.org/debian unstable InRelease
Hit:3 http://localhost:3142/debian sid InRelease
Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B]
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

/srv/debomatic/incoming/roary_3.13.0+dfsg-1.dsc exists in /srv/debomatic/incoming; copying to chroot
I: NOTICE: Log filtering will replace 'build/roary-7zkoJ8/roary-3.13.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/roary-7zkoJ8' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 12~), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree, build-essential, fakeroot, perl
Filtered Build-Depends: debhelper (>= 12~), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree, build-essential, fakeroot, perl
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1166 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1179 B]
Fetched 2960 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bedtools bioperl bsdextrautils
  ca-certificates cd-hit debhelper dh-autoreconf dh-dist-zilla
  dh-strip-nondeterminism dwz fakeroot fasttree file fontconfig
  fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext gettext-base
  groff-base intltool-debian libalgorithm-c3-perl libalgorithm-diff-perl
  libaliased-perl libapp-cmd-perl libarchive-zip-perl libarray-utils-perl
  libautobox-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libbio-perl-perl libblas3 libbrotli1 libcairo2 libcapture-tiny-perl
  libcarp-clan-perl libclass-c3-perl libclass-data-inheritable-perl
  libclass-inspector-perl libclass-load-perl libclass-load-xs-perl
  libclass-method-modifiers-perl libclass-singleton-perl
  libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-ini-perl
  libconfig-mvp-perl libconfig-mvp-reader-ini-perl libconst-fast-perl
  libcpan-uploader-perl libcpanel-json-xs-perl libcurl4t64
  libdata-compare-perl libdata-optlist-perl libdata-section-perl
  libdata-stag-perl libdatetime-locale-perl libdatetime-perl
  libdatetime-timezone-perl libdatrie1 libdebhelper-perl libdeflate0
  libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdist-zilla-perl
  libdist-zilla-plugin-podweaver-perl libdynaloader-functions-perl libelf1t64
  libencode-locale-perl libenv-path-perl libeval-closure-perl
  libexception-class-perl libexpat1 libexporter-tiny-perl libfakeroot
  libfile-chdir-perl libfile-copy-recursive-perl libfile-find-rule-perl
  libfile-grep-perl libfile-listing-perl libfile-pushd-perl
  libfile-sharedir-install-perl libfile-sharedir-perl libfile-slurper-perl
  libfile-stripnondeterminism-perl libfile-which-perl libfindbin-libs-perl
  libfontconfig1 libfreetype6 libfribidi0 libgetopt-long-descriptive-perl
  libgfortran5 libglib2.0-0t64 libgraph-perl libgraph-readwrite-perl
  libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhash-merge-simple-perl
  libheap-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libice6 libicu72 libimport-into-perl libio-all-perl
  libio-html-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl
  libio-tiecombine-perl libjbig0 libjpeg62-turbo libjson-maybexs-perl
  libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3
  liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0
  liblog-dispatch-array-perl liblog-dispatch-perl liblog-dispatchouli-perl
  liblog-log4perl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl
  libmagic-mgc libmagic1t64 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64
  libmixin-linewise-perl libmodule-implementation-perl libmodule-path-perl
  libmodule-pluggable-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoo-perl libmoose-autobox-perl libmoose-perl
  libmoosex-lazyrequire-perl libmoosex-oneargnew-perl
  libmoosex-role-parameterized-perl libmoosex-setonce-perl
  libmoosex-types-perl libmoosex-types-perl-perl libmro-compat-perl
  libnamespace-autoclean-perl libnamespace-clean-perl libnet-http-perl
  libnet-ssleay-perl libnghttp2-14 libnumber-compare-perl
  libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
  libparams-classify-perl libparams-util-perl libparams-validate-perl
  libparams-validationcompiler-perl libparse-yapp-perl libpath-tiny-perl
  libperl-prereqscanner-perl libperl-version-perl libperlio-utf8-strict-perl
  libpipeline1 libpixman-1-0 libpng16-16t64 libpod-elemental-perl
  libpod-elemental-perlmunger-perl libpod-eventual-perl libpod-weaver-perl
  libppi-perl libproc2-0 libpsl5t64 libpython3-stdlib libpython3.12-minimal
  libpython3.12-stdlib librole-hasmessage-perl librole-identifiable-perl
  librole-tiny-perl librtmp1 libscope-guard-perl libsensors-config libsensors5
  libset-object-perl libsharpyuv0 libsm6 libsoftware-license-perl
  libspecio-perl libspiffy-perl libssh2-1t64 libstring-errf-perl
  libstring-flogger-perl libstring-formatter-perl libstring-rewriteprefix-perl
  libstring-truncate-perl libsub-exporter-formethods-perl
  libsub-exporter-globexporter-perl libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-quote-perl libsub-uplevel-perl
  libsyntax-keyword-junction-perl libsyntax-perl libtask-weaken-perl libtcl8.6
  libterm-encoding-perl libterm-readkey-perl libtest-deep-perl
  libtest-differences-perl libtest-exception-perl libtest-file-perl
  libtest-files-perl libtest-most-perl libtest-output-perl libtest-warn-perl
  libtext-csv-perl libtext-diff-perl libtext-glob-perl libtext-template-perl
  libthai-data libthai0 libthrowable-perl libtie-ixhash-perl libtiff6
  libtimedate-perl libtingea0 libtirpc-common libtirpc3t64 libtk8.6 libtool
  libtry-tiny-perl libtype-tiny-perl libuchardet0 liburi-perl libuv1t64
  libvariable-magic-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6
  libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
  libxft2 libxml-parser-perl libxml-writer-perl libxml2 libxrender1 libxss1
  libxstring-perl libxt6t64 libyaml-tiny-perl m4 mafft man-db mcl media-types
  ncbi-blast+ ncbi-data netbase openssl parallel perl-openssl-defaults
  po-debconf prank procps python3 python3-minimal python3.12
  python3.12-minimal r-base-core sensible-utils sysstat tzdata ucf unzip
  x11-common xdg-utils zip
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make
  libdist-zilla-app-command-authordebs-perl pristine-tar gettext-doc
  libasprintf-dev libgettextpo-dev groff libxml-sax-expatxs-perl
  libscalar-properties-perl low-memory-monitor krb5-doc krb5-user
  libdata-dump-perl libdb-file-lock-perl libfile-mimeinfo-perl
  libfile-readbackwards-perl libfreezethaw-perl libmldbm-perl libdbd-csv-perl
  liblog-dispatch-filerotate-perl librrds-perl libxml-dom-perl
  libcrypt-ssleay-perl libscalar-number-perl lm-sensors libtest-fatal-perl
  tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk
  libdevel-lexalias-perl libbusiness-isbn-perl libregexp-ipv6-perl
  libauthen-ntlm-perl m4-doc apparmor less www-browser mcl-doc csh fish ksh
  tcsh zsh libmail-box-perl python3-doc python3-tk python3-venv
  python3.12-venv python3.12-doc binfmt-support elpa-ess r-doc-info
  | r-doc-pdf r-mathlib r-base-html isag
Recommended packages:
  bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libdbi-perl
  libgd-gd2-perl libapache-dbi-perl libxml-simple-perl libyaml-perl
  libace-perl libxml-twig-perl libset-scalar-perl devscripts curl | wget
  | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl
  libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
  libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
  libdbd-pg-perl libgd-perl libgraphviz-perl libhtml-tableextract-perl
  libpostscript-perl libsoap-lite-perl libsort-naturally-perl
  libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl
  libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-perl
  libxml-sax-writer-perl libxml-libxml-perl libclass-c3-xs-perl perl-tk
  libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl
  libxml-perl bash-completion cpanminus libarchive-tar-wrapper-perl
  libpod-coverage-trustpod-perl libterm-readline-gnu-perl libterm-ui-perl
  libtest-cpan-meta-perl libtest-pod-coverage-perl libtest-pod-perl
  libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libhtml-format-perl libio-compress-brotli-perl libjson-xs-perl
  krb5-locales libmail-sendmail-perl libmailtools-perl libmime-lite-perl
  libipc-shareable-perl libdevel-partialdump-perl libunicode-utf8-perl
  publicsuffix libref-util-perl libtext-csv-xs-perl libltdl-dev
  libtype-tiny-xs-perl libdata-dump-perl libhtml-form-perl libhttp-daemon-perl
  blast2 lynx ruby psmisc linux-sysctl-defaults r-recommended r-base-dev
  r-doc-html systemd | cron | cron-daemon libfile-mimeinfo-perl
  libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bedtools bioperl bsdextrautils
  ca-certificates cd-hit debhelper dh-autoreconf dh-dist-zilla
  dh-strip-nondeterminism dwz fakeroot fasttree file fontconfig
  fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext gettext-base
  groff-base intltool-debian libalgorithm-c3-perl libalgorithm-diff-perl
  libaliased-perl libapp-cmd-perl libarchive-zip-perl libarray-utils-perl
  libautobox-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libbio-perl-perl libblas3 libbrotli1 libcairo2 libcapture-tiny-perl
  libcarp-clan-perl libclass-c3-perl libclass-data-inheritable-perl
  libclass-inspector-perl libclass-load-perl libclass-load-xs-perl
  libclass-method-modifiers-perl libclass-singleton-perl
  libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-ini-perl
  libconfig-mvp-perl libconfig-mvp-reader-ini-perl libconst-fast-perl
  libcpan-uploader-perl libcpanel-json-xs-perl libcurl4t64
  libdata-compare-perl libdata-optlist-perl libdata-section-perl
  libdata-stag-perl libdatetime-locale-perl libdatetime-perl
  libdatetime-timezone-perl libdatrie1 libdebhelper-perl libdeflate0
  libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdist-zilla-perl
  libdist-zilla-plugin-podweaver-perl libdynaloader-functions-perl libelf1t64
  libencode-locale-perl libenv-path-perl libeval-closure-perl
  libexception-class-perl libexpat1 libexporter-tiny-perl libfakeroot
  libfile-chdir-perl libfile-copy-recursive-perl libfile-find-rule-perl
  libfile-grep-perl libfile-listing-perl libfile-pushd-perl
  libfile-sharedir-install-perl libfile-sharedir-perl libfile-slurper-perl
  libfile-stripnondeterminism-perl libfile-which-perl libfindbin-libs-perl
  libfontconfig1 libfreetype6 libfribidi0 libgetopt-long-descriptive-perl
  libgfortran5 libglib2.0-0t64 libgraph-perl libgraph-readwrite-perl
  libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhash-merge-simple-perl
  libheap-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libice6 libicu72 libimport-into-perl libio-all-perl
  libio-html-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl
  libio-tiecombine-perl libjbig0 libjpeg62-turbo libjson-maybexs-perl
  libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3
  liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0
  liblog-dispatch-array-perl liblog-dispatch-perl liblog-dispatchouli-perl
  liblog-log4perl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl
  libmagic-mgc libmagic1t64 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64
  libmixin-linewise-perl libmodule-implementation-perl libmodule-path-perl
  libmodule-pluggable-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoo-perl libmoose-autobox-perl libmoose-perl
  libmoosex-lazyrequire-perl libmoosex-oneargnew-perl
  libmoosex-role-parameterized-perl libmoosex-setonce-perl
  libmoosex-types-perl libmoosex-types-perl-perl libmro-compat-perl
  libnamespace-autoclean-perl libnamespace-clean-perl libnet-http-perl
  libnet-ssleay-perl libnghttp2-14 libnumber-compare-perl
  libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
  libparams-classify-perl libparams-util-perl libparams-validate-perl
  libparams-validationcompiler-perl libparse-yapp-perl libpath-tiny-perl
  libperl-prereqscanner-perl libperl-version-perl libperlio-utf8-strict-perl
  libpipeline1 libpixman-1-0 libpng16-16t64 libpod-elemental-perl
  libpod-elemental-perlmunger-perl libpod-eventual-perl libpod-weaver-perl
  libppi-perl libproc2-0 libpsl5t64 libpython3-stdlib libpython3.12-minimal
  libpython3.12-stdlib librole-hasmessage-perl librole-identifiable-perl
  librole-tiny-perl librtmp1 libscope-guard-perl libsensors-config libsensors5
  libset-object-perl libsharpyuv0 libsm6 libsoftware-license-perl
  libspecio-perl libspiffy-perl libssh2-1t64 libstring-errf-perl
  libstring-flogger-perl libstring-formatter-perl libstring-rewriteprefix-perl
  libstring-truncate-perl libsub-exporter-formethods-perl
  libsub-exporter-globexporter-perl libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-quote-perl libsub-uplevel-perl
  libsyntax-keyword-junction-perl libsyntax-perl libtask-weaken-perl libtcl8.6
  libterm-encoding-perl libterm-readkey-perl libtest-deep-perl
  libtest-differences-perl libtest-exception-perl libtest-file-perl
  libtest-files-perl libtest-most-perl libtest-output-perl libtest-warn-perl
  libtext-csv-perl libtext-diff-perl libtext-glob-perl libtext-template-perl
  libthai-data libthai0 libthrowable-perl libtie-ixhash-perl libtiff6
  libtimedate-perl libtingea0 libtirpc-common libtirpc3t64 libtk8.6 libtool
  libtry-tiny-perl libtype-tiny-perl libuchardet0 liburi-perl libuv1t64
  libvariable-magic-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6
  libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
  libxft2 libxml-parser-perl libxml-writer-perl libxml2 libxrender1 libxss1
  libxstring-perl libxt6t64 libyaml-tiny-perl m4 mafft man-db mcl media-types
  ncbi-blast+ ncbi-data netbase openssl parallel perl-openssl-defaults
  po-debconf prank procps python3 python3-minimal python3.12
  python3.12-minimal r-base-core sbuild-build-depends-main-dummy
  sensible-utils sysstat tzdata ucf unzip x11-common xdg-utils zip
0 upgraded, 312 newly installed, 0 to remove and 0 not upgraded.
Need to get 114 MB/116 MB of archives.
After this operation, 391 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1112 B]
Get:2 file:/srv/reprepro perl-5.40/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.3 kB]
Get:3 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.4-3 [812 kB]
Get:4 file:/srv/reprepro perl-5.40/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get:5 file:/srv/reprepro perl-5.40/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.1 kB]
Get:6 file:/srv/reprepro perl-5.40/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.4 kB]
Get:7 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB]
Get:8 file:/srv/reprepro perl-5.40/main amd64 libparams-validate-perl amd64 1.31-2+b3 [63.4 kB]
Get:9 file:/srv/reprepro perl-5.40/main amd64 libautobox-perl amd64 3.0.1-2+b4 [33.4 kB]
Get:10 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.4-3 [2137 kB]
Get:11 file:/srv/reprepro perl-5.40/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB]
Get:12 file:/srv/reprepro perl-5.40/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.1 kB]
Get:13 file:/srv/reprepro perl-5.40/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.7 kB]
Get:14 file:/srv/reprepro perl-5.40/main amd64 libmoose-perl amd64 2.2207-1+b2 [766 kB]
Get:15 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.4-1 [26.5 kB]
Get:16 file:/srv/reprepro perl-5.40/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get:17 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB]
Get:18 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get:19 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB]
Get:20 file:/srv/reprepro perl-5.40/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get:21 file:/srv/reprepro perl-5.40/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB]
Get:22 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.4-3 [1950 kB]
Get:23 file:/srv/reprepro perl-5.40/main amd64 libcpanel-json-xs-perl amd64 4.38-1+b1 [129 kB]
Get:24 file:/srv/reprepro perl-5.40/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b4 [36.1 kB]
Get:25 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.4-3 [664 kB]
Get:26 file:/srv/reprepro perl-5.40/main amd64 libnet-ssleay-perl amd64 1.94-1+b2 [339 kB]
Get:27 file:/srv/reprepro perl-5.40/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB]
Get:28 file:/srv/reprepro perl-5.40/main amd64 libclone-perl amd64 0.46-1+b3 [13.7 kB]
Get:29 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.4-1 [9500 B]
Get:30 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.4-1 [27.6 kB]
Get:31 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-5 [64.7 kB]
Get:32 file:/srv/reprepro perl-5.40/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB]
Get:33 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-5 [878 kB]
Get:34 file:/srv/reprepro perl-5.40/main amd64 libxstring-perl amd64 0.005-2+b4 [8056 B]
Get:35 file:/srv/reprepro perl-5.40/main amd64 libdatetime-perl amd64 2:1.65-1+b2 [116 kB]
Get:36 file:/srv/reprepro perl-5.40/main amd64 liblist-moreutils-xs-perl amd64 0.430-4+b2 [42.1 kB]
Get:37 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get:38 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.1-2 [1380 kB]
Get:39 file:/srv/reprepro perl-5.40/main amd64 libset-object-perl amd64 1.42-1+b5 [37.6 kB]
Get:40 file:/srv/reprepro perl-5.40/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB]
Get:41 file:/srv/reprepro perl-5.40/main amd64 libpadwalker-perl amd64 2.5-1+b6 [18.6 kB]
Get:42 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB]
Get:43 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB]
Get:44 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB]
Get:45 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB]
Get:46 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB]
Get:47 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB]
Get:48 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB]
Get:49 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-4 [96.6 kB]
Get:50 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB]
Get:51 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB]
Get:52 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB]
Get:53 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB]
Get:54 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB]
Get:55 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:56 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:57 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB]
Get:58 http://deb.debian.org/debian unstable/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB]
Get:59 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:60 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB]
Get:61 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get:62 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:63 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:64 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:65 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB]
Get:66 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get:67 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get:68 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB]
Get:69 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB]
Get:70 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get:71 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB]
Get:72 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB]
Get:73 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB]
Get:74 http://deb.debian.org/debian unstable/main amd64 bioperl all 1.7.8-1 [246 kB]
Get:75 http://deb.debian.org/debian unstable/main amd64 cd-hit amd64 4.8.1-4 [522 kB]
Get:76 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB]
Get:77 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB]
Get:78 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:79 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:80 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:81 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:82 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB]
Get:83 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:84 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB]
Get:85 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB]
Get:86 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB]
Get:87 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:88 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:89 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB]
Get:90 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:91 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:92 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB]
Get:93 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:94 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:95 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:96 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:97 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB]
Get:98 http://deb.debian.org/debian unstable/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB]
Get:99 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:100 http://deb.debian.org/debian unstable/main amd64 libgetopt-long-descriptive-perl all 0.111-1 [27.8 kB]
Get:101 http://deb.debian.org/debian unstable/main amd64 libio-tiecombine-perl all 1.005-3 [10.8 kB]
Get:102 http://deb.debian.org/debian unstable/main amd64 libmodule-pluggable-perl all 5.2-5 [23.0 kB]
Get:103 http://deb.debian.org/debian unstable/main amd64 libstring-rewriteprefix-perl all 0.009-1 [7140 B]
Get:104 http://deb.debian.org/debian unstable/main amd64 libapp-cmd-perl all 0.336-1 [65.8 kB]
Get:105 http://deb.debian.org/debian unstable/main amd64 libscope-guard-perl all 0.21-2 [8212 B]
Get:106 http://deb.debian.org/debian unstable/main amd64 libmixin-linewise-perl all 0.111-1 [14.4 kB]
Get:107 http://deb.debian.org/debian unstable/main amd64 libconfig-ini-perl all 1:0.029-1 [23.7 kB]
Get:108 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:109 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:110 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:111 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB]
Get:112 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB]
Get:113 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:114 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB]
Get:115 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:116 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:117 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:118 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB]
Get:119 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:120 http://deb.debian.org/debian unstable/main amd64 libnamespace-autoclean-perl all 0.29-2 [13.5 kB]
Get:121 http://deb.debian.org/debian unstable/main amd64 libmoosex-role-parameterized-perl all 1.11-2 [41.9 kB]
Get:122 http://deb.debian.org/debian unstable/main amd64 libmoosex-oneargnew-perl all 0.007-1 [8180 B]
Get:123 http://deb.debian.org/debian unstable/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB]
Get:124 http://deb.debian.org/debian unstable/main amd64 libstring-formatter-perl all 1.235-1 [22.1 kB]
Get:125 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:126 http://deb.debian.org/debian unstable/main amd64 libstring-errf-perl all 0.009-1 [12.9 kB]
Get:127 http://deb.debian.org/debian unstable/main amd64 librole-hasmessage-perl all 0.007-1 [9112 B]
Get:128 http://deb.debian.org/debian unstable/main amd64 librole-identifiable-perl all 0.009-1 [10.4 kB]
Get:129 http://deb.debian.org/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:130 http://deb.debian.org/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:131 http://deb.debian.org/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:132 http://deb.debian.org/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get:133 http://deb.debian.org/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:134 http://deb.debian.org/debian unstable/main amd64 libthrowable-perl all 1.001-2 [15.7 kB]
Get:135 http://deb.debian.org/debian unstable/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB]
Get:136 http://deb.debian.org/debian unstable/main amd64 libconfig-mvp-perl all 2.200013-1 [47.1 kB]
Get:137 http://deb.debian.org/debian unstable/main amd64 libconfig-mvp-reader-ini-perl all 2.101465-1 [6900 B]
Get:138 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get:139 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.088-1 [222 kB]
Get:140 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB]
Get:141 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB]
Get:142 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:143 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:144 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:145 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get:146 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:147 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:148 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:149 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB]
Get:150 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:151 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:152 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:153 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB]
Get:154 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get:155 http://deb.debian.org/debian unstable/main amd64 libcpan-uploader-perl all 0.103018-1 [16.3 kB]
Get:156 http://deb.debian.org/debian unstable/main amd64 libdata-section-perl all 0.200008-1 [13.1 kB]
Get:157 http://deb.debian.org/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get:158 http://deb.debian.org/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get:159 http://deb.debian.org/debian unstable/main amd64 libparams-validationcompiler-perl all 0.31-1 [30.9 kB]
Get:160 http://deb.debian.org/debian unstable/main amd64 libspecio-perl all 0.48-1 [142 kB]
Get:161 http://deb.debian.org/debian unstable/main amd64 libdatetime-locale-perl all 1:1.41-1 [3131 kB]
Get:162 http://deb.debian.org/debian unstable/main amd64 libclass-singleton-perl all 1.6-2 [12.5 kB]
Get:163 http://deb.debian.org/debian unstable/main amd64 libdatetime-timezone-perl all 1:2.62-1+2024a [262 kB]
Get:164 http://deb.debian.org/debian unstable/main amd64 libfile-copy-recursive-perl all 0.45-4 [20.0 kB]
Get:165 http://deb.debian.org/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get:166 http://deb.debian.org/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get:167 http://deb.debian.org/debian unstable/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB]
Get:168 http://deb.debian.org/debian unstable/main amd64 libfile-pushd-perl all 1.016-2 [13.5 kB]
Get:169 http://deb.debian.org/debian unstable/main amd64 libfile-sharedir-install-perl all 0.14-2 [11.6 kB]
Get:170 http://deb.debian.org/debian unstable/main amd64 libhash-merge-simple-perl all 0.051-3 [7404 B]
Get:171 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB]
Get:172 http://deb.debian.org/debian unstable/main amd64 liblog-dispatch-perl all 2.71-1 [75.8 kB]
Get:173 http://deb.debian.org/debian unstable/main amd64 liblog-dispatch-array-perl all 1.005-1 [6700 B]
Get:174 http://deb.debian.org/debian unstable/main amd64 libstring-flogger-perl all 1.101246-1 [7380 B]
Get:175 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-globexporter-perl all 0.006-1 [8024 B]
Get:176 http://deb.debian.org/debian unstable/main amd64 liblog-dispatchouli-perl all 3.007-1 [35.0 kB]
Get:177 http://deb.debian.org/debian unstable/main amd64 libexporter-tiny-perl all 1.006002-1 [38.7 kB]
Get:178 http://deb.debian.org/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB]
Get:179 http://deb.debian.org/debian unstable/main amd64 libsyntax-perl all 0.004-1.1 [6548 B]
Get:180 http://deb.debian.org/debian unstable/main amd64 libsyntax-keyword-junction-perl all 0.003008-4 [11.7 kB]
Get:181 http://deb.debian.org/debian unstable/main amd64 libmoose-autobox-perl all 0.16-2 [52.8 kB]
Get:182 http://deb.debian.org/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:183 http://deb.debian.org/debian unstable/main amd64 libmoosex-lazyrequire-perl all 0.11-2 [9212 B]
Get:184 http://deb.debian.org/debian unstable/main amd64 libmoosex-setonce-perl all 0.200002-2 [6632 B]
Get:185 http://deb.debian.org/debian unstable/main amd64 libcarp-clan-perl all 6.08-2 [14.1 kB]
Get:186 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-formethods-perl all 0.100055-1 [8024 B]
Get:187 http://deb.debian.org/debian unstable/main amd64 libmoosex-types-perl all 0.50-2 [54.6 kB]
Get:188 http://deb.debian.org/debian unstable/main amd64 libmoosex-types-perl-perl all 0.101344-1 [8160 B]
Get:189 http://deb.debian.org/debian unstable/main amd64 libpath-tiny-perl all 0.146-1 [56.2 kB]
Get:190 http://deb.debian.org/debian unstable/main amd64 libmodule-path-perl all 0.19-3 [12.3 kB]
Get:191 http://deb.debian.org/debian unstable/main amd64 libtask-weaken-perl all 1.06-2 [9364 B]
Get:192 http://deb.debian.org/debian unstable/main amd64 libppi-perl all 1.278-1 [294 kB]
Get:193 http://deb.debian.org/debian unstable/main amd64 libtype-tiny-perl all 2.004000-1 [357 kB]
Get:194 http://deb.debian.org/debian unstable/main amd64 libperl-prereqscanner-perl all 1.100-1 [31.0 kB]
Get:195 http://deb.debian.org/debian unstable/main amd64 libperl-version-perl all 1.017-1 [29.0 kB]
Get:196 http://deb.debian.org/debian unstable/main amd64 libtext-template-perl all 1.61-1 [54.4 kB]
Get:197 http://deb.debian.org/debian unstable/main amd64 libsoftware-license-perl all 0.104006-1 [116 kB]
Get:198 http://deb.debian.org/debian unstable/main amd64 libterm-encoding-perl all 0.03-2 [4980 B]
Get:199 http://deb.debian.org/debian unstable/main amd64 libyaml-tiny-perl all 1.74-1 [30.7 kB]
Get:200 http://deb.debian.org/debian unstable/main amd64 libdist-zilla-perl all 6.032-1 [343 kB]
Get:201 http://deb.debian.org/debian unstable/main amd64 dh-dist-zilla all 1.4.1 [17.9 kB]
Get:202 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB]
Get:203 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB]
Get:204 http://deb.debian.org/debian unstable/main amd64 fasttree amd64 2.1.11-2 [181 kB]
Get:205 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB]
Get:206 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB]
Get:207 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB]
Get:208 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:209 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:210 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB]
Get:211 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB]
Get:212 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB]
Get:213 http://deb.debian.org/debian unstable/main amd64 libarray-utils-perl all 0.5-3 [6184 B]
Get:214 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB]
Get:215 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB]
Get:216 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB]
Get:217 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB]
Get:218 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB]
Get:219 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB]
Get:220 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB]
Get:221 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB]
Get:222 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB]
Get:223 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB]
Get:224 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB]
Get:225 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB]
Get:226 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB]
Get:227 http://deb.debian.org/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:228 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB]
Get:229 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB]
Get:230 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B]
Get:231 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB]
Get:232 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB]
Get:233 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.62.1-2 [74.9 kB]
Get:234 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB]
Get:235 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB]
Get:236 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-7 [216 kB]
Get:237 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.9.1-1 [463 kB]
Get:238 http://deb.debian.org/debian unstable/main amd64 libdata-compare-perl all 1.29-1 [19.6 kB]
Get:239 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB]
Get:240 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB]
Get:241 http://deb.debian.org/debian unstable/main amd64 libpod-eventual-perl all 0.094003-1 [14.2 kB]
Get:242 http://deb.debian.org/debian unstable/main amd64 libstring-truncate-perl all 1.100603-1 [10.2 kB]
Get:243 http://deb.debian.org/debian unstable/main amd64 libpod-elemental-perl all 0.103006-1 [67.2 kB]
Get:244 http://deb.debian.org/debian unstable/main amd64 libpod-elemental-perlmunger-perl all 0.200007-1 [10.5 kB]
Get:245 http://deb.debian.org/debian unstable/main amd64 libpod-weaver-perl all 4.020-1 [70.1 kB]
Get:246 http://deb.debian.org/debian unstable/main amd64 libdist-zilla-plugin-podweaver-perl all 4.010-1 [9580 B]
Get:247 http://deb.debian.org/debian unstable/main amd64 libenv-path-perl all 0.19-4 [19.1 kB]
Get:248 http://deb.debian.org/debian unstable/main amd64 libfile-chdir-perl all 0.1008-1.2 [11.9 kB]
Get:249 http://deb.debian.org/debian unstable/main amd64 libfile-grep-perl all 0.02-3 [8352 B]
Get:250 http://deb.debian.org/debian unstable/main amd64 libfile-slurper-perl all 0.014-1 [8560 B]
Get:251 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get:252 http://deb.debian.org/debian unstable/main amd64 libfindbin-libs-perl all 3.0.2-1 [29.7 kB]
Get:253 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB]
Get:254 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-1 [837 kB]
Get:255 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.81.1-3 [1496 kB]
Get:256 http://deb.debian.org/debian unstable/main amd64 libheap-perl all 0.80-5 [34.3 kB]
Get:257 http://deb.debian.org/debian unstable/main amd64 libgraph-perl all 1:0.9729-1 [108 kB]
Get:258 http://deb.debian.org/debian unstable/main amd64 libspiffy-perl all 0.46-1 [25.7 kB]
Get:259 http://deb.debian.org/debian unstable/main amd64 libio-all-perl all 0.87-2 [67.3 kB]
Get:260 http://deb.debian.org/debian unstable/main amd64 libparse-yapp-perl all 1.21-4 [41.5 kB]
Get:261 http://deb.debian.org/debian unstable/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB]
Get:262 http://deb.debian.org/debian unstable/main amd64 libgraph-readwrite-perl all 2.10-1 [45.2 kB]
Get:263 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB]
Get:264 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB]
Get:265 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB]
Get:266 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB]
Get:267 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB]
Get:268 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB]
Get:269 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB]
Get:270 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB]
Get:271 http://deb.debian.org/debian unstable/main amd64 liblmdb0 amd64 0.9.31-1+b1 [44.8 kB]
Get:272 http://deb.debian.org/debian unstable/main amd64 liblog-log4perl-perl all 1.57-1 [367 kB]
Get:273 http://deb.debian.org/debian unstable/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB]
Get:274 http://deb.debian.org/debian unstable/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB]
Get:275 http://deb.debian.org/debian unstable/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB]
Get:276 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get:277 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB]
Get:278 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.54.0+ds-1 [219 kB]
Get:279 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-1 [48.0 kB]
Get:280 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-1 [35.0 kB]
Get:281 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB]
Get:282 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b1 [9176 B]
Get:283 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get:284 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10 [34.7 kB]
Get:285 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB]
Get:286 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB]
Get:287 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB]
Get:288 http://deb.debian.org/debian unstable/main amd64 libtest-file-perl all 1.993-1 [24.5 kB]
Get:289 http://deb.debian.org/debian unstable/main amd64 libtest-files-perl all 0.26-1 [21.6 kB]
Get:290 http://deb.debian.org/debian unstable/main amd64 libtest-output-perl all 1.034-1 [16.0 kB]
Get:291 http://deb.debian.org/debian unstable/main amd64 libtext-csv-perl all 2.04-1 [112 kB]
Get:292 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB]
Get:293 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB]
Get:294 http://deb.debian.org/debian unstable/main amd64 libtingea0 amd64 21-361-2+b1 [51.3 kB]
Get:295 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:296 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB]
Get:297 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB]
Get:298 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB]
Get:299 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB]
Get:300 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-5 [148 kB]
Get:301 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB]
Get:302 http://deb.debian.org/debian unstable/main amd64 mafft amd64 7.505-1 [1078 kB]
Get:303 http://deb.debian.org/debian unstable/main amd64 mcl amd64 1:22-282+ds-2 [474 kB]
Get:304 http://deb.debian.org/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg2-3 [3539 kB]
Get:305 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+ amd64 2.16.0+ds-5 [15.2 MB]
Get:306 http://deb.debian.org/debian unstable/main amd64 sysstat amd64 12.7.5-2 [623 kB]
Get:307 http://deb.debian.org/debian unstable/main amd64 parallel all 20240222+ds-2 [2163 kB]
Get:308 http://deb.debian.org/debian unstable/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB]
Get:309 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-14 [233 kB]
Get:310 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB]
Get:311 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:312 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.1-1 [28.3 MB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 114 MB in 1s (136 MB/s)
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Setting up libexpat1:amd64 (2.6.2-1) ...
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Setting up python3-minimal (3.12.4-1) ...
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Preparing to unpack .../301-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up cd-hit (4.8.1-4) ...
Setting up libarray-utils-perl (0.5-3) ...
Setting up media-types (10.1.0) ...
Setting up libmodule-pluggable-perl (5.2-5) ...
Setting up libpipeline1:amd64 (1.5.7-2) ...
Setting up liblmdb0:amd64 (0.9.31-1+b1) ...
Setting up libgraphite2-3:amd64 (1.3.14-2) ...
Setting up libfile-sharedir-install-perl (0.14-2) ...
Setting up ncbi-data (6.1.20170106+dfsg2-3) ...
Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ...
Setting up libsharpyuv0:amd64 (1.4.0-0.1) ...
Setting up libfile-slurper-perl (0.014-1) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libxau6:amd64 (1:1.0.9-1+b1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ...
Setting up libkeyutils1:amd64 (1.6.3-3) ...
Setting up libxcb1:amd64 (1.17.0-2) ...
Setting up libtie-ixhash-perl (1.23-4) ...
Setting up libtask-weaken-perl (1.06-2) ...
Setting up libicu72:amd64 (72.1-5) ...
Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ...
Setting up libhash-merge-simple-perl (0.051-3) ...
Setting up bsdextrautils (2.40.2-4) ...
Setting up libparse-yapp-perl (1.21-4) ...
Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ...
Setting up libclass-inspector-perl (1.36-3) ...
Setting up libdynaloader-functions-perl (0.004-1) ...
Setting up libdatrie1:amd64 (0.2.13-3) ...
Setting up libtext-glob-perl (0.11-3) ...
Setting up libtest-deep-perl (1.204-1) ...
Setting up libclass-method-modifiers-perl (2.15-1) ...
Setting up libfile-pushd-perl (1.016-2) ...
Setting up libmagic-mgc (1:5.45-3) ...
Setting up libxcb-render0:amd64 (1.17.0-2) ...
Setting up mafft (7.505-1) ...
Setting up libclone-perl:amd64 (0.46-1+b3) ...
Setting up libalgorithm-diff-perl (1.201-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3+b3) ...
Setting up libcpanel-json-xs-perl:amd64 (4.38-1+b1) ...
Setting up libio-stringy-perl (2.113-2) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up libhtml-tagset-perl (3.24-1) ...
Setting up libtest-file-perl (1.993-1) ...
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.16) ...
Setting up libbrotli1:amd64 (1.1.0-2+b4) ...
Setting up libheap-perl (0.80-5) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libuv1t64:amd64 (1.48.0-5) ...
Setting up libmagic1t64:amd64 (1:5.45-3) ...
Setting up x11-common (1:7.7+23.1) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libsensors-config (1:3.6.0-10) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1) ...
Setting up libnghttp2-14:amd64 (1.62.1-2) ...
Setting up libdeflate0:amd64 (1.20-1) ...
Setting up perl-openssl-defaults:amd64 (7+b2) ...
Setting up gettext-base (0.22.5-2) ...
Setting up m4 (1.4.19-4) ...
Setting up libclass-singleton-perl (1.6-2) ...
Setting up libpadwalker-perl (2.5-1+b6) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libxcb-shm0:amd64 (1.17.0-2) ...
Setting up libfindbin-libs-perl (3.0.2-1) ...
Setting up libcom-err2:amd64 (1.47.1-1) ...
Setting up file (1:5.45-3) ...
Setting up libxstring-perl:amd64 (0.005-2+b4) ...
Setting up libyaml-tiny-perl (1.74-1) ...
Setting up libjbig0:amd64 (2.1-6.1+b1) ...
Setting up libfakeroot:amd64 (1.35.1-1) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up libelf1t64:amd64 (0.191-2) ...
Setting up libkrb5support0:amd64 (1.21.3-3) ...
Setting up libterm-encoding-perl (0.03-2) ...
Setting up libnumber-compare-perl (0.03-3) ...
Setting up libscope-guard-perl (0.21-2) ...
Setting up libfile-copy-recursive-perl (0.45-4) ...
Setting up tzdata (2024a-4) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Tue Aug  6 07:48:35 UTC 2024.
Universal Time is now:  Tue Aug  6 07:48:35 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up fakeroot (1.35.1-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Setting up libjson-maybexs-perl (1.004005-1) ...
Setting up libio-string-perl (1.08-4) ...
Setting up zip (3.0-14) ...
Setting up libpackage-stash-xs-perl:amd64 (0.30-1+b4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libglib2.0-0t64:amd64 (2.81.1-3) ...
No schema files found: doing nothing.
Setting up libblas3:amd64 (3.12.0-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up libclass-data-inheritable-perl (0.08-3) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libset-object-perl (1.42-1+b5) ...
Setting up liblog-log4perl-perl (1.57-1) ...
Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ...
Setting up libx11-data (2:1.8.7-1) ...
Setting up libtext-diff-perl (1.45-2) ...
Setting up libfile-find-rule-perl (0.34-3) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ...
Setting up libio-tiecombine-perl (1.005-3) ...
Setting up libperlio-utf8-strict-perl (0.010-1+b3) ...
Setting up libxml-writer-perl (0.900-2) ...
Setting up libenv-path-perl (0.19-4) ...
Setting up libfribidi0:amd64 (1.0.15-1) ...
Setting up libproc2-0:amd64 (2:4.0.4-5) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:amd64 (1.6.43-5) ...
Setting up libvariable-magic-perl (0.64-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtext-template-perl (1.61-1) ...
Setting up libtcl8.6:amd64 (8.6.14+dfsg-1) ...
Setting up autopoint (0.22.5-2) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Setting up libfile-grep-perl (0.02-3) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up liblist-moreutils-xs-perl (0.430-4+b2) ...
Setting up libsensors5:amd64 (1:3.6.0-10) ...
Setting up libk5crypto3:amd64 (1.21.3-3) ...
Setting up libparams-util-perl (1.102-3+b1) ...
Setting up libspiffy-perl (0.46-1) ...
Setting up libgfortran5:amd64 (14.2.0-1) ...
Setting up autoconf (2.71-3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:amd64 (1.4.0-0.1) ...
Setting up libcapture-tiny-perl (0.48-2) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libsub-name-perl:amd64 (0.27-1+b3) ...
Setting up dwz (0.15-1+b1) ...
Setting up libdata-stag-perl (0.14-3) ...
Setting up libfile-chdir-perl (0.1008-1.2) ...
Setting up sensible-utils (0.0.24) ...
Setting up libtiff6:amd64 (4.5.1+git230720-4) ...
Setting up libpath-tiny-perl (0.146-1) ...
Setting up libuchardet0:amd64 (0.0.8-1+b1) ...
Setting up procps (2:4.0.4-5) ...
Setting up libjson-perl (4.10000-1) ...
Setting up libtingea0:amd64 (21-361-2+b1) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libfile-sharedir-perl (1.118-3) ...
Setting up libsub-uplevel-perl (0.2800-3) ...
Setting up libx11-6:amd64 (2:1.8.7-1+b1) ...
Setting up libaliased-perl (0.34-3) ...
Setting up libthai-data (0.1.29-2) ...
Setting up libcarp-clan-perl (6.08-2) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up fasttree (2.1.11-2) ...

Configuration file '/etc/protocols'
 ==> File on system created by you or by a script.
 ==> File also in package provided by package maintainer.
 ==> Using current old file as you requested.

Setting up netbase (6.4) ...
Configuration file '/etc/services'
 ==> File on system created by you or by a script.
 ==> File also in package provided by package maintainer.
 ==> Using current old file as you requested.
Setting up libsub-quote-perl (2.006008-1) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libclass-xsaccessor-perl (1.19-4+b4) ...
Setting up libkrb5-3:amd64 (1.21.3-3) ...
Setting up libmodule-path-perl (0.19-3) ...
Setting up libbio-perl-perl (1.7.8-1) ...
Setting up libssh2-1t64:amd64 (1.11.0-7) ...
Setting up libexporter-tiny-perl (1.006002-1) ...
Setting up libterm-readkey-perl (2.38-2+b4) ...
Setting up libperl-version-perl (1.017-1) ...
Setting up openssl (3.3.1-2) ...
Setting up libautobox-perl (3.0.1-2+b4) ...
Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up bedtools (2.31.1+dfsg-2) ...
Setting up liburi-perl (5.28-1) ...
Setting up prank (0.0.170427+dfsg-3) ...
Setting up libtext-csv-perl (2.04-1) ...
Setting up libnet-ssleay-perl:amd64 (1.94-1+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up libice6:amd64 (2:1.0.10-1+b1) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up liblapack3:amd64 (3.12.0-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up gettext (0.22.5-2) ...
Setting up libmbedx509-1t64:amd64 (2.28.8-1) ...
Setting up libfile-listing-perl (6.16-1) ...
Setting up libpython3.12-stdlib:amd64 (3.12.4-3) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ...
Setting up libtool (2.4.7-7) ...
Setting up fontconfig-config (2.15.0-1.1) ...
Setting up liblist-moreutils-perl (0.430-2) ...
Setting up libtest-warn-perl (0.37-2) ...
Setting up python3.12 (3.12.4-3) ...
Setting up libtype-tiny-perl (2.004000-1) ...
Setting up libtest-differences-perl (0.71-1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b1) ...
Setting up libnet-http-perl (6.23-1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libio-all-perl (0.87-2) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libgraph-perl (1:0.9729-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ...
Setting up libdata-compare-perl (1.29-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:amd64 (0.1.29-2) ...
Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
146 added, 0 removed; done.
Setting up libtest-exception-perl (0.43-3) ...
Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ...
Setting up mcl (1:22-282+ds-2) ...
Setting up libppi-perl (1.278-1) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up libtest-output-perl (1.034-1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libmbedtls14t64:amd64 (2.28.8-1) ...
Setting up groff-base (1.23.0-5) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ...
Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ...
Setting up libxss1:amd64 (1:1.2.3-1+b1) ...
Setting up libfontconfig1:amd64 (2.15.0-1.1) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:amd64 (2:1.2.3-1+b1) ...
Setting up sysstat (12.7.5-2) ...

Creating config file /etc/default/sysstat with new version
update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode
Setting up libio-socket-ssl-perl (2.088-1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libpython3-stdlib:amd64 (3.12.4-1) ...
Setting up libhttp-message-perl (6.46-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libstring-truncate-perl (1.100603-1) ...
Setting up libpaper1:amd64 (1.1.29+b1) ...

Creating config file /etc/papersize with new version
Setting up libstring-flogger-perl (1.101246-1) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up fontconfig (2.15.0-1.1) ...
Regenerating fonts cache... done.
Setting up libparams-validationcompiler-perl (0.31-1) ...
Setting up libxft2:amd64 (2.3.6-1+b1) ...
Setting up libcurl4t64:amd64 (8.9.1-1) ...
Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libtest-most-perl (0.38-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libtk8.6:amd64 (8.6.14-1) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libpango-1.0-0:amd64 (1.54.0+ds-1) ...
Setting up libsub-exporter-formethods-perl (0.100055-1) ...
Setting up python3 (3.12.4-1) ...
Setting up libpaper-utils (1.1.29+b1) ...
Setting up man-db (2.12.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libmixin-linewise-perl (0.111-1) ...
Setting up libcairo2:amd64 (1.18.0-3+b1) ...
Setting up libconfig-ini-perl (1:0.029-1) ...
Setting up ncbi-blast+ (2.16.0+ds-5) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libstring-formatter-perl (1.235-1) ...
Setting up parallel (20240222+ds-2) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-section-perl (0.200008-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ...
Setting up libsub-exporter-globexporter-perl (0.006-1) ...
Setting up libstring-rewriteprefix-perl (0.009-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ...
Setting up bioperl (1.7.8-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up debhelper (13.16) ...
Setting up libpod-eventual-perl (0.094003-1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libtest-files-perl (0.26-1) ...
Setting up libsoftware-license-perl (0.104006-1) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libstring-errf-perl (0.009-1) ...
Setting up libspecio-perl (0.48-1) ...
Setting up r-base-core (4.4.1-1) ...

Creating config file /etc/R/Renviron with new version
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b4) ...
Setting up libparams-validate-perl:amd64 (1.31-2+b3) ...
Setting up libb-hooks-endofscope-perl (0.28-1) ...
Setting up libthrowable-perl (1.001-2) ...
Setting up libmoose-perl:amd64 (2.2207-1+b2) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libmoosex-setonce-perl (0.200002-2) ...
Setting up libsyntax-perl (0.004-1.1) ...
Setting up libgetopt-long-descriptive-perl (0.111-1) ...
Setting up librole-identifiable-perl (0.009-1) ...
Setting up libnamespace-autoclean-perl (0.29-2) ...
Setting up libdatetime-locale-perl (1:1.41-1) ...
Setting up libmoosex-role-parameterized-perl (1.11-2) ...
Setting up libapp-cmd-perl (0.336-1) ...
Setting up librole-hasmessage-perl (0.007-1) ...
Setting up libperl-prereqscanner-perl (1.100-1) ...
Setting up libdatetime-timezone-perl (1:2.62-1+2024a) ...
Setting up libmoosex-types-perl (0.50-2) ...
Setting up libmoosex-oneargnew-perl (0.007-1) ...
Setting up libmoosex-lazyrequire-perl (0.11-2) ...
Setting up libsyntax-keyword-junction-perl (0.003008-4) ...
Setting up liblog-dispatch-perl (2.71-1) ...
Setting up libconfig-mvp-perl (2.200013-1) ...
Setting up libdatetime-perl (2:1.65-1+b2) ...
Setting up libpod-elemental-perl (0.103006-1) ...
Setting up libmoose-autobox-perl (0.16-2) ...
Setting up libmoosex-types-perl-perl (0.101344-1) ...
Setting up libconfig-mvp-reader-ini-perl (2.101465-1) ...
Setting up liblog-dispatch-array-perl (1.005-1) ...
Setting up libpod-elemental-perlmunger-perl (0.200007-1) ...
Setting up liblog-dispatchouli-perl (3.007-1) ...
Setting up libpod-weaver-perl (4.020-1) ...
Setting up libwww-perl (6.77-1) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libxml-parser-perl (2.47-1+b3) ...
Setting up libgraph-readwrite-perl (2.10-1) ...
Setting up libcpan-uploader-perl (0.103018-1) ...
Setting up libdist-zilla-perl (6.032-1) ...
Setting up libdist-zilla-plugin-podweaver-perl (4.010-1) ...
Setting up dh-dist-zilla (1.4.1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.39-6) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64)
Toolchain package versions: binutils_2.43-1 dpkg-dev_1.22.11 g++-13_13.3.0-5 g++-14_14.2.0-1 gcc-13_13.3.0-5 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-5 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.10.3-1
Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.21-2.1 bedtools_2.31.1+dfsg-2 binutils_2.43-1 binutils-common_2.43-1 binutils-x86-64-linux-gnu_2.43-1 bioperl_1.7.8-1 bsdextrautils_2.40.2-4 bsdutils_1:2.40.2-4 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 cd-hit_4.8.1-4 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-5 cpp-13-x86-64-linux-gnu_13.3.0-5 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-dist-zilla_1.4.1 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 fasttree_2.1.11-2 file_1:5.45-3 findutils_4.10.0-2 fontconfig_2.15.0-1.1 fontconfig-config_2.15.0-1.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: roary
Binary: roary
Architecture: all
Version: 3.13.0+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Homepage: http://sanger-pathogens.github.io/Roary/
Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/roary
Vcs-Git: https://salsa.debian.org/med-team/roary.git
Testsuite: autopkgtest
Build-Depends: debhelper (>= 12~), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree
Build-Depends-Indep: perl
Package-List:
 roary deb science optional arch=all
Checksums-Sha1:
 ec41e9813412b1e168328131cabc91ae1ea06162 207348 roary_3.13.0+dfsg.orig.tar.xz
 00f683879e2465a2f91d2214d806d3209ace2dcd 6612 roary_3.13.0+dfsg-1.debian.tar.xz
Checksums-Sha256:
 5450fe6f4bab8b27829d2ec6836c0a8c9a38d42b3891fab29b10a9587dee2fd1 207348 roary_3.13.0+dfsg.orig.tar.xz
 f316c055c6c368084b80133c39749d78c70f229ecb1e5a8134ee35c4e7d1e830 6612 roary_3.13.0+dfsg-1.debian.tar.xz
Files:
 fe3935332843c9d4dfb4d4c5cb9080a6 207348 roary_3.13.0+dfsg.orig.tar.xz
 5e189111d062819d48d66eff830c7c36 6612 roary_3.13.0+dfsg-1.debian.tar.xz

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gpgv: Signature made Fri Nov  8 13:51:49 2019 UTC
gpgv:                using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./roary_3.13.0+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting roary in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking roary_3.13.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking roary_3.13.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying rename_R_script.patch
dpkg-source: info: applying use-dz-starter.patch
dpkg-source: info: applying use-debian-perl-path.patch
dpkg-source: info: applying new-bioperl-require.patch

Check disk space
----------------

Sufficient free space for build

+------------------------------------------------------------------------------+
| Starting Timed Build Commands                                                |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network roary_3.13.0+dfsg-1 perl-5.40-throwaway amd64
--------------------------------------------------------------------------------------------------------------------


I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network roary_3.13.0+dfsg-1 perl-5.40-throwaway amd64'.

Finished processing commands.
--------------------------------------------------------------------------------

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LANGUAGE=en_GB:en
LC_ALL=C.UTF-8
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
LOGNAME=debomatic
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic
SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic
SCHROOT_COMMAND=env
SCHROOT_GID=110
SCHROOT_GROUP=sbuild
SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-13cd45eb-64cf-467d-9927-7743f1ee22c0
SCHROOT_UID=1002
SCHROOT_USER=debomatic
SHELL=/bin/sh
USER=debomatic

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz
dpkg-buildpackage: info: source package roary
dpkg-buildpackage: info: source version 3.13.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Sascha Steinbiss <satta@debian.org>
 dpkg-source -Zxz --before-build .
dpkg-buildpackage: info: host architecture amd64
 fakeroot debian/rules clean
dh clean --with dist-zilla
   dh_dzil_clean
   dh_clean
 dpkg-source -Zxz -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building roary using existing ./roary_3.13.0+dfsg.orig.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building roary in roary_3.13.0+dfsg-1.debian.tar.xz
dpkg-source: info: building roary in roary_3.13.0+dfsg-1.dsc
 debian/rules build
dh build --with dist-zilla
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_dzil_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mv bin/create_pan_genome_plots.R bin/create_pan_genome_plots
dh_dzil_build --
[DZ] beginning to build Bio-Roary
[DZ] writing Bio-Roary in .build/debian-build
[DZ] built in .build/debian-build
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_configure -D .build/debian-build
	cd .build/debian-build && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro"
Warning: prerequisite Digest::MD5::File 0 not found.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::Roary
Writing MYMETA.yml and MYMETA.json
   dh_auto_build -D .build/debian-build
	cd .build/debian-build && make -j2
make[1]: Entering directory '/<<PKGBUILDDIR>>/.build/debian-build'
cp lib/Bio/Roary/Exceptions.pm blib/lib/Bio/Roary/Exceptions.pm
cp lib/Bio/Roary/CommandLine/IterativeCdhit.pm blib/lib/Bio/Roary/CommandLine/IterativeCdhit.pm
cp lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm blib/lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
cp lib/Bio/Roary/AssemblyStatistics.pm blib/lib/Bio/Roary/AssemblyStatistics.pm
cp lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm blib/lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
cp lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm blib/lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
cp lib/Bio/Roary/ClustersRole.pm blib/lib/Bio/Roary/ClustersRole.pm
cp lib/Bio/Roary/CombinedProteome.pm blib/lib/Bio/Roary/CombinedProteome.pm
cp lib/Bio/Roary/AccessoryClustering.pm blib/lib/Bio/Roary/AccessoryClustering.pm
cp lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
cp lib/Bio/Roary/CommandLine/AssemblyStatistics.pm blib/lib/Bio/Roary/CommandLine/AssemblyStatistics.pm
cp lib/Bio/Roary/External/Cdhit.pm blib/lib/Bio/Roary/External/Cdhit.pm
cp lib/Bio/Roary/AccessoryBinaryFasta.pm blib/lib/Bio/Roary/AccessoryBinaryFasta.pm
cp lib/Bio/Roary/CommandLine/Roary.pm blib/lib/Bio/Roary/CommandLine/Roary.pm
cp lib/Bio/Roary.pm blib/lib/Bio/Roary.pm
cp lib/Bio/Roary/CommandLine/CreatePanGenome.pm blib/lib/Bio/Roary/CommandLine/CreatePanGenome.pm
cp lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm blib/lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
cp lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm blib/lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
cp lib/Bio/Roary/BedFromGFFRole.pm blib/lib/Bio/Roary/BedFromGFFRole.pm
cp lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm blib/lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
cp lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm blib/lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm
cp lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm blib/lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
cp lib/Bio/Roary/AnalyseGroups.pm blib/lib/Bio/Roary/AnalyseGroups.pm
cp lib/Bio/Roary/External/CheckTools.pm blib/lib/Bio/Roary/External/CheckTools.pm
cp lib/Bio/Roary/CommandLine/Common.pm blib/lib/Bio/Roary/CommandLine/Common.pm
cp lib/Bio/Roary/External/Blastp.pm blib/lib/Bio/Roary/External/Blastp.pm
cp lib/Bio/Roary/AnnotateGroups.pm blib/lib/Bio/Roary/AnnotateGroups.pm
cp lib/Bio/Roary/ChunkFastaFile.pm blib/lib/Bio/Roary/ChunkFastaFile.pm
cp lib/Bio/Roary/CommandLine/QueryRoary.pm blib/lib/Bio/Roary/CommandLine/QueryRoary.pm
cp lib/Bio/Roary/GroupStatistics.pm blib/lib/Bio/Roary/GroupStatistics.pm
cp lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
cp lib/Bio/Roary/FilterFullClusters.pm blib/lib/Bio/Roary/FilterFullClusters.pm
cp lib/Bio/Roary/External/PostAnalysis.pm blib/lib/Bio/Roary/External/PostAnalysis.pm
cp lib/Bio/Roary/External/Makeblastdb.pm blib/lib/Bio/Roary/External/Makeblastdb.pm
cp lib/Bio/Roary/OrderGenes.pm blib/lib/Bio/Roary/OrderGenes.pm
cp lib/Bio/Roary/External/Prank.pm blib/lib/Bio/Roary/External/Prank.pm
cp lib/Bio/Roary/IterativeCdhit.pm blib/lib/Bio/Roary/IterativeCdhit.pm
cp lib/Bio/Roary/External/Fasttree.pm blib/lib/Bio/Roary/External/Fasttree.pm
cp lib/Bio/Roary/Output/EMBLHeaderCommon.pm blib/lib/Bio/Roary/Output/EMBLHeaderCommon.pm
cp lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm blib/lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
cp lib/Bio/Roary/InflateClusters.pm blib/lib/Bio/Roary/InflateClusters.pm
cp lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm blib/lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
cp lib/Bio/Roary/ExtractProteomeFromGFF.pm blib/lib/Bio/Roary/ExtractProteomeFromGFF.pm
cp lib/Bio/Roary/FilterUnknownsFromFasta.pm blib/lib/Bio/Roary/FilterUnknownsFromFasta.pm
cp lib/Bio/Roary/External/IterativeCdhit.pm blib/lib/Bio/Roary/External/IterativeCdhit.pm
cp lib/Bio/Roary/MergeMultifastaAlignments.pm blib/lib/Bio/Roary/MergeMultifastaAlignments.pm
cp lib/Bio/Roary/Output/EmblGroups.pm blib/lib/Bio/Roary/Output/EmblGroups.pm
cp lib/Bio/Roary/JobRunner/Parallel.pm blib/lib/Bio/Roary/JobRunner/Parallel.pm
cp lib/Bio/Roary/Output/GroupMultifasta.pm blib/lib/Bio/Roary/Output/GroupMultifasta.pm
cp lib/Bio/Roary/Output/DifferenceBetweenSets.pm blib/lib/Bio/Roary/Output/DifferenceBetweenSets.pm
cp lib/Bio/Roary/JobRunner/Role.pm blib/lib/Bio/Roary/JobRunner/Role.pm
cp lib/Bio/Roary/JobRunner/Local.pm blib/lib/Bio/Roary/JobRunner/Local.pm
cp lib/Bio/Roary/External/Mafft.pm blib/lib/Bio/Roary/External/Mafft.pm
cp lib/Bio/Roary/External/Mcl.pm blib/lib/Bio/Roary/External/Mcl.pm
cp lib/Bio/Roary/ExtractProteomeFromGFFs.pm blib/lib/Bio/Roary/ExtractProteomeFromGFFs.pm
cp lib/Bio/Roary/Output/BlastIdentityFrequency.pm blib/lib/Bio/Roary/Output/BlastIdentityFrequency.pm
cp lib/Bio/Roary/LookupGeneFiles.pm blib/lib/Bio/Roary/LookupGeneFiles.pm
cp lib/Bio/Roary/GeneNamesFromGFF.pm blib/lib/Bio/Roary/GeneNamesFromGFF.pm
cp lib/Bio/Roary/GroupLabels.pm blib/lib/Bio/Roary/GroupLabels.pm
cp lib/Bio/Roary/UniqueGenesPerSample.pm blib/lib/Bio/Roary/UniqueGenesPerSample.pm
cp lib/Bio/Roary/SortFasta.pm blib/lib/Bio/Roary/SortFasta.pm
cp lib/Bio/Roary/PresenceAbsenceMatrix.pm blib/lib/Bio/Roary/PresenceAbsenceMatrix.pm
cp lib/Bio/Roary/QC/Report.pm blib/lib/Bio/Roary/QC/Report.pm
cp lib/Bio/Roary/SpreadsheetRole.pm blib/lib/Bio/Roary/SpreadsheetRole.pm
cp lib/Bio/Roary/PrepareInputFiles.pm blib/lib/Bio/Roary/PrepareInputFiles.pm
cp lib/Bio/Roary/SplitGroups.pm blib/lib/Bio/Roary/SplitGroups.pm
cp lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
cp lib/Bio/Roary/PostAnalysis.pm blib/lib/Bio/Roary/PostAnalysis.pm
cp lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
cp lib/Bio/Roary/Output/GroupsMultifastaProtein.pm blib/lib/Bio/Roary/Output/GroupsMultifastaProtein.pm
cp lib/Bio/Roary/SampleOrder.pm blib/lib/Bio/Roary/SampleOrder.pm
cp lib/Bio/Roary/ParseGFFAnnotationRole.pm blib/lib/Bio/Roary/ParseGFFAnnotationRole.pm
cp lib/Bio/Roary/SequenceLengths.pm blib/lib/Bio/Roary/SequenceLengths.pm
cp lib/Bio/Roary/Output/QueryGroups.pm blib/lib/Bio/Roary/Output/QueryGroups.pm
cp lib/Bio/Roary/Output/NumberOfGroups.pm blib/lib/Bio/Roary/Output/NumberOfGroups.pm
cp lib/Bio/Roary/ReorderSpreadsheet.pm blib/lib/Bio/Roary/ReorderSpreadsheet.pm
cp lib/Bio/Roary/ReformatInputGFFs.pm blib/lib/Bio/Roary/ReformatInputGFFs.pm
cp lib/Bio/Roary/Output/GroupsMultifastas.pm blib/lib/Bio/Roary/Output/GroupsMultifastas.pm
cp lib/Bio/Roary/ParallelAllAgainstAllBlast.pm blib/lib/Bio/Roary/ParallelAllAgainstAllBlast.pm
cp bin/create_pan_genome blib/script/create_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome
cp bin/create_pan_genome_plots blib/script/create_pan_genome_plots
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome_plots
cp bin/extract_proteome_from_gff blib/script/extract_proteome_from_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/extract_proteome_from_gff
cp bin/iterative_cdhit blib/script/iterative_cdhit
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/iterative_cdhit
cp bin/pan_genome_assembly_statistics blib/script/pan_genome_assembly_statistics
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_assembly_statistics
cp bin/pan_genome_core_alignment blib/script/pan_genome_core_alignment
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_core_alignment
cp bin/pan_genome_post_analysis blib/script/pan_genome_post_analysis
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_post_analysis
cp bin/pan_genome_reorder_spreadsheet blib/script/pan_genome_reorder_spreadsheet
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_reorder_spreadsheet
cp bin/parallel_all_against_all_blastp blib/script/parallel_all_against_all_blastp
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/parallel_all_against_all_blastp
cp bin/protein_alignment_from_nucleotides blib/script/protein_alignment_from_nucleotides
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/protein_alignment_from_nucleotides
cp bin/query_pan_genome blib/script/query_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/query_pan_genome
cp bin/roary blib/script/roary
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary
cp bin/roary-create_pan_genome_plots.R blib/script/roary-create_pan_genome_plots.R
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-create_pan_genome_plots.R
cp bin/roary-pan_genome_reorder_spreadsheet blib/script/roary-pan_genome_reorder_spreadsheet
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-pan_genome_reorder_spreadsheet
cp bin/roary-query_pan_genome blib/script/roary-query_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-query_pan_genome
cp bin/roary-unique_genes_per_sample blib/script/roary-unique_genes_per_sample
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-unique_genes_per_sample
cp bin/transfer_annotation_to_groups blib/script/transfer_annotation_to_groups
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/transfer_annotation_to_groups
Manifying 16 pod documents
Manifying 26 pod documents
Manifying 28 pod documents
Manifying 25 pod documents
make[1]: Leaving directory '/<<PKGBUILDDIR>>/.build/debian-build'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Hmmm, seems the test is not automatically run anyway by the build system
dh_auto_test || true
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary
dh binary --with dist-zilla
   dh_testroot
   dh_prep
   dh_auto_install -D .build/debian-build --destdir=debian/roary/
	cd .build/debian-build && make -j2 install DESTDIR=/<<BUILDDIR>>/roary-3.13.0\+dfsg/debian/roary AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<PKGBUILDDIR>>/.build/debian-build'
Manifying 16 pod documents
Manifying 26 pod documents
Manifying 28 pod documents
Manifying 25 pod documents
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/LookupGeneFiles.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/AnnotateGroups.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/AccessoryClustering.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/GroupStatistics.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/IterativeCdhit.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CombinedProteome.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/ParallelAllAgainstAllBlast.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/ReorderSpreadsheet.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/ReformatInputGFFs.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/ParseGFFAnnotationRole.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/UniqueGenesPerSample.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/GroupLabels.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/SortFasta.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/FilterFullClusters.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/PresenceAbsenceMatrix.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/SplitGroups.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/ClustersRole.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/PrepareInputFiles.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Exceptions.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/SpreadsheetRole.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/PostAnalysis.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/InflateClusters.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/ChunkFastaFile.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/AnalyseGroups.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/BedFromGFFRole.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/ContigsToGeneIDsFromGFF.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/OrderGenes.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/SampleOrder.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/AssemblyStatistics.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/AccessoryBinaryFasta.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/SequenceLengths.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/MergeMultifastaAlignments.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/FilterUnknownsFromFasta.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/Cdhit.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/Mafft.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/IterativeCdhit.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/Mcl.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/Fasttree.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/Blastp.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/CheckTools.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/PostAnalysis.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/Makeblastdb.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/External/Prank.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Local.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Parallel.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Role.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaProtein.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastas.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/EmblGroups.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupMultifasta.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/NumberOfGroups.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/EMBLHeaderCommon.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/QueryGroups.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/BlastIdentityFrequency.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/Output/DifferenceBetweenSets.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/QC/Report.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/QueryRoary.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/IterativeCdhit.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Common.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Roary.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/AssemblyStatistics.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/CreatePanGenome.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/roary-pan_genome_reorder_spreadsheet.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/extract_proteome_from_gff.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/roary-unique_genes_per_sample.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/create_pan_genome.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/protein_alignment_from_nucleotides.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/query_pan_genome.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/pan_genome_post_analysis.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/pan_genome_reorder_spreadsheet.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/parallel_all_against_all_blastp.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/transfer_annotation_to_groups.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/pan_genome_assembly_statistics.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/iterative_cdhit.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/roary.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/create_pan_genome_plots.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/pan_genome_core_alignment.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man1/roary-query_pan_genome.1p
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupMultifasta.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::ParseGFFAnnotationRole.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::SampleOrder.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::QueryGroups.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::OrderGenes.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::PostAnalysis.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::PrepareInputFiles.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Parallel.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::ReorderSpreadsheet.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::CheckTools.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::TransferAnnotationToGroups.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CombinedProteome.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::UniqueGenesPerSample.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::AnnotateGroups.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Local.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::Cdhit.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::QueryRoary.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::AssemblyStatistics.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Roary.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::IterativeCdhit.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::QC::Report.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::LookupGeneFiles.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::FilterFullClusters.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::AnalyseGroups.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::GeneNamesFromGFF.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFF.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::Makeblastdb.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::GroupStatistics.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::BlastIdentityFrequency.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Exceptions.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::AssemblyStatistics.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::PostAnalysis.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::ClustersRole.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::FilterUnknownsFromFasta.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::Blastp.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::UniqueGenesPerSample.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastasNucleotide.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::Fasttree.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::ExtractCoreGenesFromSpreadsheet.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::GeneAlignmentFromNucleotides.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::SplitGroups.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaNucleotide.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryReorderSpreadsheet.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Role.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryPostAnalysis.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::ParallelAllAgainstAllBlast.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::EmblGroups.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::MergeMultifastaAlignments.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::ContigsToGeneIDsFromGFF.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::GeneAlignmentFromNucleotides.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastas.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::DifferenceBetweenSets.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryCoreAlignment.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::NumberOfGroups.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::Prank.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaProtein.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::SpreadsheetRole.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::PresenceAbsenceMatrix.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::Mafft.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::ReformatInputGFFs.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::SequenceLengths.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Common.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFFs.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::Mcl.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ExtractProteomeFromGff.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::CreatePanGenome.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::IterativeCdhit.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::InflateClusters.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::SortFasta.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::External::IterativeCdhit.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::BedFromGFFRole.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::Output::EMBLHeaderCommon.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/share/man/man3/Bio::Roary::GroupLabels.3pm
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/pan_genome_post_analysis
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/iterative_cdhit
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/pan_genome_assembly_statistics
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/protein_alignment_from_nucleotides
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/roary
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/roary-pan_genome_reorder_spreadsheet
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/pan_genome_core_alignment
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/pan_genome_reorder_spreadsheet
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/extract_proteome_from_gff
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/create_pan_genome
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/transfer_annotation_to_groups
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/parallel_all_against_all_blastp
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/roary-create_pan_genome_plots.R
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/roary-query_pan_genome
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/roary-unique_genes_per_sample
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/query_pan_genome
Installing /<<PKGBUILDDIR>>/debian/roary/usr/bin/create_pan_genome_plots
make[1]: Leaving directory '/<<PKGBUILDDIR>>/.build/debian-build'
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_lintian
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'roary' in '../roary_3.13.0+dfsg-1_all.deb'.
 dpkg-genbuildinfo -O../roary_3.13.0+dfsg-1_amd64.buildinfo
 dpkg-genchanges -O../roary_3.13.0+dfsg-1_amd64.changes
dpkg-genchanges: info: including full source code in upload
 dpkg-source -Zxz --after-build .
dpkg-buildpackage: info: full upload (original source is included)
--------------------------------------------------------------------------------
Build finished at 2024-08-06T07:49:08Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


roary_3.13.0+dfsg-1_amd64.changes:
----------------------------------

Format: 1.8
Date: Fri, 08 Nov 2019 14:37:07 +0100
Source: roary
Binary: roary
Architecture: source all
Version: 3.13.0+dfsg-1
Distribution: perl-5.40-throwaway
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
 roary      - high speed stand alone pan genome pipeline
Changes:
 roary (3.13.0+dfsg-1) unstable; urgency=medium
 .
   * New upstream release.
   * Use debhelper 12.
   * Bump Standards-Version.
   * Update source lintian override location and tags.
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 af01483d1d735e74de6bd65123abd903 172956 science optional roary_3.13.0+dfsg-1_all.deb
 3dcddf36106451b3300b9613f679e8fb 14712 science optional roary_3.13.0+dfsg-1_amd64.buildinfo

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: roary
Binary: roary
Architecture: all source
Version: 3.13.0+dfsg-1
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Tue, 06 Aug 2024 07:49:08 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
 usr-local-has-programs
Installed-Build-Depends:
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.22.5-2),
 autotools-dev (= 20220109.1),
 base-files (= 13.5),
 base-passwd (= 3.6.4),
 bash (= 5.2.21-2.1),
 bedtools (= 2.31.1+dfsg-2),
 binutils (= 2.43-1),
 binutils-common (= 2.43-1),
 binutils-x86-64-linux-gnu (= 2.43-1),
 bioperl (= 1.7.8-1),
 bsdextrautils (= 2.40.2-4),
 bsdutils (= 1:2.40.2-4),
 build-essential (= 12.10),
 bzip2 (= 1.0.8-5.1),
 ca-certificates (= 20240203),
 cd-hit (= 4.8.1-4),
 coreutils (= 9.4-3.1),
 cpp (= 4:14.1.0-2),
 cpp-13 (= 13.3.0-5),
 cpp-13-x86-64-linux-gnu (= 13.3.0-5),
 cpp-14 (= 14.2.0-1),
 cpp-14-x86-64-linux-gnu (= 14.2.0-1),
 cpp-x86-64-linux-gnu (= 4:14.1.0-2),
 dash (= 0.5.12-9),
 debconf (= 1.5.87),
 debhelper (= 13.16),
 debianutils (= 5.20),
 dh-autoreconf (= 20),
 dh-dist-zilla (= 1.4.1),
 dh-strip-nondeterminism (= 1.14.0-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.11),
 dpkg-dev (= 1.22.11),
 dwz (= 0.15-1+b1),
 fasttree (= 2.1.11-2),
 file (= 1:5.45-3),
 findutils (= 4.10.0-2),
 fontconfig (= 2.15.0-1.1),
 fontconfig-config (= 2.15.0-1.1),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 g++ (= 4:14.1.0-2),
 g++-14 (= 14.2.0-1),
 g++-14-x86-64-linux-gnu (= 14.2.0-1),
 g++-x86-64-linux-gnu (= 4:14.1.0-2),
 gcc (= 4:14.1.0-2),
 gcc-13 (= 13.3.0-5),
 gcc-13-base (= 13.3.0-5),
 gcc-13-x86-64-linux-gnu (= 13.3.0-5),
 gcc-14 (= 14.2.0-1),
 gcc-14-base (= 14.2.0-1),
 gcc-14-x86-64-linux-gnu (= 14.2.0-1),
 gcc-x86-64-linux-gnu (= 4:14.1.0-2),
 gettext (= 0.22.5-2),
 gettext-base (= 0.22.5-2),
 grep (= 3.11-4),
 groff-base (= 1.23.0-5),
 gzip (= 1.12-1.1),
 hostname (= 3.23+nmu2),
 init-system-helpers (= 1.66),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-2),
 libalgorithm-c3-perl (= 0.11-2),
 libalgorithm-diff-perl (= 1.201-1),
 libaliased-perl (= 0.34-3),
 libapp-cmd-perl (= 0.336-1),
 libarchive-zip-perl (= 1.68-1),
 libarray-utils-perl (= 0.5-3),
 libasan8 (= 14.2.0-1),
 libatomic1 (= 14.2.0-1),
 libattr1 (= 1:2.5.2-1),
 libaudit-common (= 1:3.1.2-4),
 libaudit1 (= 1:3.1.2-4+b1),
 libautobox-perl (= 3.0.1-2+b4),
 libb-hooks-endofscope-perl (= 0.28-1),
 libb-hooks-op-check-perl (= 0.22-3+b2),
 libbinutils (= 2.43-1),
 libbio-perl-perl (= 1.7.8-1),
 libblas3 (= 3.12.0-3),
 libblkid1 (= 2.40.2-4),
 libbrotli1 (= 1.1.0-2+b4),
 libbsd0 (= 0.12.2-1),
 libbz2-1.0 (= 1.0.8-5.1),
 libc-bin (= 2.39-6),
 libc-dev-bin (= 2.39-6),
 libc6 (= 2.39-6),
 libc6-dev (= 2.39-6),
 libcairo2 (= 1.18.0-3+b1),
 libcap-ng0 (= 0.8.5-1+b1),
 libcap2 (= 1:2.66-5),
 libcapture-tiny-perl (= 0.48-2),
 libcarp-clan-perl (= 6.08-2),
 libcc1-0 (= 14.2.0-1),
 libclass-c3-perl (= 0.35-2),
 libclass-data-inheritable-perl (= 0.08-3),
 libclass-inspector-perl (= 1.36-3),
 libclass-load-perl (= 0.25-2),
 libclass-load-xs-perl (= 0.10-2+b4),
 libclass-method-modifiers-perl (= 2.15-1),
 libclass-singleton-perl (= 1.6-2),
 libclass-xsaccessor-perl (= 1.19-4+b4),
 libclone-perl (= 0.46-1+b3),
 libcom-err2 (= 1.47.1-1),
 libconfig-ini-perl (= 1:0.029-1),
 libconfig-mvp-perl (= 2.200013-1),
 libconfig-mvp-reader-ini-perl (= 2.101465-1),
 libconst-fast-perl (= 0.014-2),
 libcpan-uploader-perl (= 0.103018-1),
 libcpanel-json-xs-perl (= 4.38-1+b1),
 libcrypt-dev (= 1:4.4.36-4),
 libcrypt1 (= 1:4.4.36-4),
 libctf-nobfd0 (= 2.43-1),
 libctf0 (= 2.43-1),
 libcurl4t64 (= 8.9.1-1),
 libdata-compare-perl (= 1.29-1),
 libdata-optlist-perl (= 0.114-1),
 libdata-section-perl (= 0.200008-1),
 libdata-stag-perl (= 0.14-3),
 libdatetime-locale-perl (= 1:1.41-1),
 libdatetime-perl (= 2:1.65-1+b2),
 libdatetime-timezone-perl (= 1:2.62-1+2024a),
 libdatrie1 (= 0.2.13-3),
 libdb5.3t64 (= 5.3.28+dfsg2-7),
 libdebconfclient0 (= 0.272),
 libdebhelper-perl (= 13.16),
 libdeflate0 (= 1.20-1),
 libdevel-callchecker-perl (= 0.009-1+b1),
 libdevel-globaldestruction-perl (= 0.14-4),
 libdevel-overloadinfo-perl (= 0.007-1),
 libdevel-stacktrace-perl (= 2.0500-1),
 libdist-checkconflicts-perl (= 0.11-2),
 libdist-zilla-perl (= 6.032-1),
 libdist-zilla-plugin-podweaver-perl (= 4.010-1),
 libdpkg-perl (= 1.22.11),
 libdynaloader-functions-perl (= 0.004-1),
 libelf1t64 (= 0.191-2),
 libencode-locale-perl (= 1.05-3),
 libenv-path-perl (= 0.19-4),
 libeval-closure-perl (= 0.14-3),
 libexception-class-perl (= 1.45-1),
 libexpat1 (= 2.6.2-1),
 libexporter-tiny-perl (= 1.006002-1),
 libffi8 (= 3.4.6-1),
 libfile-chdir-perl (= 0.1008-1.2),
 libfile-copy-recursive-perl (= 0.45-4),
 libfile-find-rule-perl (= 0.34-3),
 libfile-grep-perl (= 0.02-3),
 libfile-listing-perl (= 6.16-1),
 libfile-pushd-perl (= 1.016-2),
 libfile-sharedir-install-perl (= 0.14-2),
 libfile-sharedir-perl (= 1.118-3),
 libfile-slurper-perl (= 0.014-1),
 libfile-stripnondeterminism-perl (= 1.14.0-1),
 libfile-which-perl (= 1.27-2),
 libfindbin-libs-perl (= 3.0.2-1),
 libfontconfig1 (= 2.15.0-1.1),
 libfreetype6 (= 2.13.2+dfsg-1+b4),
 libfribidi0 (= 1.0.15-1),
 libgcc-13-dev (= 13.3.0-5),
 libgcc-14-dev (= 14.2.0-1),
 libgcc-s1 (= 14.2.0-1),
 libgdbm-compat4t64 (= 1.23-6),
 libgdbm6t64 (= 1.23-6),
 libgetopt-long-descriptive-perl (= 0.111-1),
 libgfortran5 (= 14.2.0-1),
 libglib2.0-0t64 (= 2.81.1-3),
 libgmp10 (= 2:6.3.0+dfsg-2+b1),
 libgnutls30t64 (= 3.8.6-2),
 libgomp1 (= 14.2.0-1),
 libgprofng0 (= 2.43-1),
 libgraph-perl (= 1:0.9729-1),
 libgraph-readwrite-perl (= 2.10-1),
 libgraphite2-3 (= 1.3.14-2),
 libgssapi-krb5-2 (= 1.21.3-3),
 libharfbuzz0b (= 8.3.0-2+b1),
 libhash-merge-simple-perl (= 0.051-3),
 libheap-perl (= 0.80-5),
 libhogweed6t64 (= 3.10-1),
 libhtml-parser-perl (= 3.83-1+b1),
 libhtml-tagset-perl (= 3.24-1),
 libhtml-tree-perl (= 5.07-3),
 libhttp-cookies-perl (= 6.11-1),
 libhttp-date-perl (= 6.06-1),
 libhttp-message-perl (= 6.46-1),
 libhttp-negotiate-perl (= 6.01-2),
 libhwasan0 (= 14.2.0-1),
 libice6 (= 2:1.0.10-1+b1),
 libicu72 (= 72.1-5),
 libidn2-0 (= 2.3.7-2),
 libimport-into-perl (= 1.002005-2),
 libio-all-perl (= 0.87-2),
 libio-html-perl (= 1.004-3),
 libio-socket-ssl-perl (= 2.088-1),
 libio-string-perl (= 1.08-4),
 libio-stringy-perl (= 2.113-2),
 libio-tiecombine-perl (= 1.005-3),
 libisl23 (= 0.26-3+b2),
 libitm1 (= 14.2.0-1),
 libjansson4 (= 2.14-2+b2),
 libjbig0 (= 2.1-6.1+b1),
 libjpeg62-turbo (= 1:2.1.5-3),
 libjson-maybexs-perl (= 1.004005-1),
 libjson-perl (= 4.10000-1),
 libk5crypto3 (= 1.21.3-3),
 libkeyutils1 (= 1.6.3-3),
 libkrb5-3 (= 1.21.3-3),
 libkrb5support0 (= 1.21.3-3),
 liblapack3 (= 3.12.0-3),
 libldap-2.5-0 (= 2.5.18+dfsg-2+b1),
 liblerc4 (= 4.0.0+ds-4+b1),
 liblist-moreutils-perl (= 0.430-2),
 liblist-moreutils-xs-perl (= 0.430-4+b2),
 liblmdb0 (= 0.9.31-1+b1),
 liblog-dispatch-array-perl (= 1.005-1),
 liblog-dispatch-perl (= 2.71-1),
 liblog-dispatchouli-perl (= 3.007-1),
 liblog-log4perl-perl (= 1.57-1),
 liblsan0 (= 14.2.0-1),
 liblwp-mediatypes-perl (= 6.04-2),
 liblwp-protocol-https-perl (= 6.14-1),
 liblzma5 (= 5.6.2-2),
 libmagic-mgc (= 1:5.45-3),
 libmagic1t64 (= 1:5.45-3),
 libmbedcrypto7t64 (= 2.28.8-1),
 libmbedtls14t64 (= 2.28.8-1),
 libmbedx509-1t64 (= 2.28.8-1),
 libmd0 (= 1.1.0-2),
 libmixin-linewise-perl (= 0.111-1),
 libmodule-implementation-perl (= 0.09-2),
 libmodule-path-perl (= 0.19-3),
 libmodule-pluggable-perl (= 5.2-5),
 libmodule-runtime-conflicts-perl (= 0.003-2),
 libmodule-runtime-perl (= 0.016-2),
 libmoo-perl (= 2.005005-1),
 libmoose-autobox-perl (= 0.16-2),
 libmoose-perl (= 2.2207-1+b2),
 libmoosex-lazyrequire-perl (= 0.11-2),
 libmoosex-oneargnew-perl (= 0.007-1),
 libmoosex-role-parameterized-perl (= 1.11-2),
 libmoosex-setonce-perl (= 0.200002-2),
 libmoosex-types-perl (= 0.50-2),
 libmoosex-types-perl-perl (= 0.101344-1),
 libmount1 (= 2.40.2-4),
 libmpc3 (= 1.3.1-1+b2),
 libmpfr6 (= 4.2.1-1+b1),
 libmro-compat-perl (= 0.15-2),
 libnamespace-autoclean-perl (= 0.29-2),
 libnamespace-clean-perl (= 0.27-2),
 libncursesw6 (= 6.5-2),
 libnet-http-perl (= 6.23-1),
 libnet-ssleay-perl (= 1.94-1+b2),
 libnettle8t64 (= 3.10-1),
 libnghttp2-14 (= 1.62.1-2),
 libnumber-compare-perl (= 0.03-3),
 libp11-kit0 (= 0.25.5-2),
 libpackage-deprecationmanager-perl (= 0.18-1),
 libpackage-stash-perl (= 0.40-1),
 libpackage-stash-xs-perl (= 0.30-1+b4),
 libpadwalker-perl (= 2.5-1+b6),
 libpam-modules (= 1.5.3-7),
 libpam-modules-bin (= 1.5.3-7),
 libpam-runtime (= 1.5.3-7),
 libpam0g (= 1.5.3-7),
 libpango-1.0-0 (= 1.54.0+ds-1),
 libpangocairo-1.0-0 (= 1.54.0+ds-1),
 libpangoft2-1.0-0 (= 1.54.0+ds-1),
 libpaper-utils (= 1.1.29+b1),
 libpaper1 (= 1.1.29+b1),
 libparams-classify-perl (= 0.015-2+b4),
 libparams-util-perl (= 1.102-3+b1),
 libparams-validate-perl (= 1.31-2+b3),
 libparams-validationcompiler-perl (= 0.31-1),
 libparse-yapp-perl (= 1.21-4),
 libpath-tiny-perl (= 0.146-1),
 libpcre2-8-0 (= 10.42-4+b1),
 libperl-prereqscanner-perl (= 1.100-1),
 libperl-version-perl (= 1.017-1),
 libperl5.40 (= 5.40.0-1),
 libperlio-utf8-strict-perl (= 0.010-1+b3),
 libpipeline1 (= 1.5.7-2),
 libpixman-1-0 (= 0.42.2-1+b1),
 libpng16-16t64 (= 1.6.43-5),
 libpod-elemental-perl (= 0.103006-1),
 libpod-elemental-perlmunger-perl (= 0.200007-1),
 libpod-eventual-perl (= 0.094003-1),
 libpod-weaver-perl (= 4.020-1),
 libppi-perl (= 1.278-1),
 libproc2-0 (= 2:4.0.4-5),
 libpsl5t64 (= 0.21.2-1.1),
 libpython3-stdlib (= 3.12.4-1),
 libpython3.12-minimal (= 3.12.4-3),
 libpython3.12-stdlib (= 3.12.4-3),
 libquadmath0 (= 14.2.0-1),
 libreadline8t64 (= 8.2-4),
 librole-hasmessage-perl (= 0.007-1),
 librole-identifiable-perl (= 0.009-1),
 librole-tiny-perl (= 2.002004-1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4),
 libsasl2-2 (= 2.1.28+dfsg1-6),
 libsasl2-modules-db (= 2.1.28+dfsg1-6),
 libscope-guard-perl (= 0.21-2),
 libseccomp2 (= 2.5.5-1+b1),
 libselinux1 (= 3.5-2+b3),
 libsensors-config (= 1:3.6.0-10),
 libsensors5 (= 1:3.6.0-10),
 libset-object-perl (= 1.42-1+b5),
 libsframe1 (= 2.43-1),
 libsharpyuv0 (= 1.4.0-0.1),
 libsm6 (= 2:1.2.3-1+b1),
 libsmartcols1 (= 2.40.2-4),
 libsoftware-license-perl (= 0.104006-1),
 libspecio-perl (= 0.48-1),
 libspiffy-perl (= 0.46-1),
 libsqlite3-0 (= 3.46.0-1),
 libssh2-1t64 (= 1.11.0-7),
 libssl3t64 (= 3.3.1-2),
 libstdc++-14-dev (= 14.2.0-1),
 libstdc++6 (= 14.2.0-1),
 libstring-errf-perl (= 0.009-1),
 libstring-flogger-perl (= 1.101246-1),
 libstring-formatter-perl (= 1.235-1),
 libstring-rewriteprefix-perl (= 0.009-1),
 libstring-truncate-perl (= 1.100603-1),
 libsub-exporter-formethods-perl (= 0.100055-1),
 libsub-exporter-globexporter-perl (= 0.006-1),
 libsub-exporter-perl (= 0.990-1),
 libsub-exporter-progressive-perl (= 0.001013-3),
 libsub-identify-perl (= 0.14-3+b3),
 libsub-install-perl (= 0.929-1),
 libsub-name-perl (= 0.27-1+b3),
 libsub-quote-perl (= 2.006008-1),
 libsub-uplevel-perl (= 0.2800-3),
 libsyntax-keyword-junction-perl (= 0.003008-4),
 libsyntax-perl (= 0.004-1.1),
 libsystemd0 (= 256.4-2),
 libtask-weaken-perl (= 1.06-2),
 libtasn1-6 (= 4.19.0-3+b2),
 libtcl8.6 (= 8.6.14+dfsg-1),
 libterm-encoding-perl (= 0.03-2),
 libterm-readkey-perl (= 2.38-2+b4),
 libtest-deep-perl (= 1.204-1),
 libtest-differences-perl (= 0.71-1),
 libtest-exception-perl (= 0.43-3),
 libtest-file-perl (= 1.993-1),
 libtest-files-perl (= 0.26-1),
 libtest-most-perl (= 0.38-1),
 libtest-output-perl (= 1.034-1),
 libtest-warn-perl (= 0.37-2),
 libtext-csv-perl (= 2.04-1),
 libtext-diff-perl (= 1.45-2),
 libtext-glob-perl (= 0.11-3),
 libtext-template-perl (= 1.61-1),
 libthai-data (= 0.1.29-2),
 libthai0 (= 0.1.29-2),
 libthrowable-perl (= 1.001-2),
 libtie-ixhash-perl (= 1.23-4),
 libtiff6 (= 4.5.1+git230720-4),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.5-2),
 libtingea0 (= 21-361-2+b1),
 libtirpc-common (= 1.3.4+ds-1.3),
 libtirpc3t64 (= 1.3.4+ds-1.3),
 libtk8.6 (= 8.6.14-1),
 libtool (= 2.4.7-7),
 libtry-tiny-perl (= 0.31-2),
 libtsan2 (= 14.2.0-1),
 libtype-tiny-perl (= 2.004000-1),
 libubsan1 (= 14.2.0-1),
 libuchardet0 (= 0.0.8-1+b1),
 libudev1 (= 256.4-2),
 libunistring5 (= 1.2-1),
 liburi-perl (= 5.28-1),
 libuuid1 (= 2.40.2-4),
 libuv1t64 (= 1.48.0-5),
 libvariable-magic-perl (= 0.64-1+b1),
 libwebp7 (= 1.4.0-0.1),
 libwww-perl (= 6.77-1),
 libwww-robotrules-perl (= 6.02-1),
 libx11-6 (= 2:1.8.7-1+b1),
 libx11-data (= 2:1.8.7-1),
 libxau6 (= 1:1.0.9-1+b1),
 libxcb-render0 (= 1.17.0-2),
 libxcb-shm0 (= 1.17.0-2),
 libxcb1 (= 1.17.0-2),
 libxdmcp6 (= 1:1.1.2-3+b1),
 libxext6 (= 2:1.3.4-1+b1),
 libxft2 (= 2.3.6-1+b1),
 libxml-parser-perl (= 2.47-1+b3),
 libxml-writer-perl (= 0.900-2),
 libxml2 (= 2.12.7+dfsg-3+b1),
 libxrender1 (= 1:0.9.10-1.1+b1),
 libxss1 (= 1:1.2.3-1+b1),
 libxstring-perl (= 0.005-2+b4),
 libxt6t64 (= 1:1.2.1-1.2),
 libyaml-tiny-perl (= 1.74-1),
 libzstd1 (= 1.5.6+dfsg-1),
 linux-libc-dev (= 6.10.3-1),
 m4 (= 1.4.19-4),
 mafft (= 7.505-1),
 make (= 4.3-4.1),
 man-db (= 2.12.1-2),
 mawk (= 1.3.4.20240622-2),
 mcl (= 1:22-282+ds-2),
 media-types (= 10.1.0),
 ncbi-blast+ (= 2.16.0+ds-5),
 ncbi-data (= 6.1.20170106+dfsg2-3),
 ncurses-base (= 6.5-2),
 ncurses-bin (= 6.5-2),
 netbase (= 6.4),
 openssl (= 3.3.1-2),
 parallel (= 20240222+ds-2),
 patch (= 2.7.6-7),
 perl (= 5.40.0-1),
 perl-base (= 5.40.0-1),
 perl-modules-5.40 (= 5.40.0-1),
 perl-openssl-defaults (= 7+b2),
 po-debconf (= 1.0.21+nmu1),
 prank (= 0.0.170427+dfsg-3),
 procps (= 2:4.0.4-5),
 python3 (= 3.12.4-1),
 python3-minimal (= 3.12.4-1),
 python3.12 (= 3.12.4-3),
 python3.12-minimal (= 3.12.4-3),
 r-base-core (= 4.4.1-1),
 readline-common (= 8.2-4),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.24),
 sysstat (= 12.7.5-2),
 sysvinit-utils (= 3.09-2),
 tar (= 1.35+dfsg-3),
 tzdata (= 2024a-4),
 ucf (= 3.0043+nmu1),
 unzip (= 6.0-28),
 usr-is-merged (= 39),
 util-linux (= 2.40.2-4),
 x11-common (= 1:7.7+23.1),
 xdg-utils (= 1.1.3-4.1),
 xz-utils (= 5.6.2-2),
 zip (= 3.0-14),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1)
Environment:
 DEB_BUILD_OPTIONS="parallel=2"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 LD_LIBRARY_PATH="/usr/lib/libeatmydata"
 SOURCE_DATE_EPOCH="1573220227"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


roary_3.13.0+dfsg-1_all.deb
---------------------------

 new Debian package, version 2.0.
 size 172956 bytes: control archive=6132 bytes.
    1489 bytes,    19 lines      control
   16882 bytes,   195 lines      md5sums
 Package: roary
 Version: 3.13.0+dfsg-1
 Architecture: all
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 669
 Depends: perl:any, bioperl (>= 1.7.4), libarray-utils-perl, libdigest-md5-file-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree
 Section: science
 Priority: optional
 Homepage: http://sanger-pathogens.github.io/Roary/
 Description: high speed stand alone pan genome pipeline
  Roary is a high speed stand alone pan genome pipeline, which takes annotated
  assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates
  the pan genome. Using a standard desktop PC, it can analyse datasets with
  thousands of samples, something which is computationally infeasible with
  existing methods, without compromising the quality of the results. 128 samples
  can be analysed in under 1 hour using 1 GB of RAM and a single processor.
  To perform this analysis using existing methods would take weeks and hundreds
  of GB of RAM. Roary is not intended for meta-genomics or for comparing
  extremely diverse sets of genomes.

drwxr-xr-x root/root         0 2019-11-08 13:37 ./
drwxr-xr-x root/root         0 2019-11-08 13:37 ./usr/
drwxr-xr-x root/root         0 2019-11-08 13:37 ./usr/bin/
-rwxr-xr-x root/root       969 2019-11-08 13:37 ./usr/bin/create_pan_genome
-rwxr-xr-x root/root      3198 2019-11-08 13:37 ./usr/bin/create_pan_genome_plots
-rwxr-xr-x root/root       950 2019-11-08 13:37 ./usr/bin/extract_proteome_from_gff
-rwxr-xr-x root/root       839 2019-11-08 13:37 ./usr/bin/iterative_cdhit
-rwxr-xr-x root/root      1043 2019-11-08 13:37 ./usr/bin/pan_genome_assembly_statistics
-rwxr-xr-x root/root      1157 2019-11-08 13:37 ./usr/bin/pan_genome_core_alignment
-rwxr-xr-x root/root       934 2019-11-08 13:37 ./usr/bin/pan_genome_post_analysis
-rwxr-xr-x root/root      1042 2019-11-08 13:37 ./usr/bin/pan_genome_reorder_spreadsheet
-rwxr-xr-x root/root      1030 2019-11-08 13:37 ./usr/bin/parallel_all_against_all_blastp
-rwxr-xr-x root/root      1109 2019-11-08 13:37 ./usr/bin/protein_alignment_from_nucleotides
-rwxr-xr-x root/root       983 2019-11-08 13:37 ./usr/bin/query_pan_genome
-rwxr-xr-x root/root       848 2019-11-08 13:37 ./usr/bin/roary
-rwxr-xr-x root/root      2832 2019-11-08 13:37 ./usr/bin/roary-create_pan_genome_plots.R
-rwxr-xr-x root/root      1042 2019-11-08 13:37 ./usr/bin/roary-pan_genome_reorder_spreadsheet
-rwxr-xr-x root/root       983 2019-11-08 13:37 ./usr/bin/roary-query_pan_genome
-rwxr-xr-x root/root      1127 2019-11-08 13:37 ./usr/bin/roary-unique_genes_per_sample
-rwxr-xr-x root/root      1097 2019-11-08 13:37 ./usr/bin/transfer_annotation_to_groups
drwxr-xr-x root/root         0 2019-11-08 13:37 ./usr/share/
drwxr-xr-x root/root         0 2019-11-08 13:37 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-11-08 13:37 ./usr/share/doc/roary/
-rw-r--r-- root/root       546 2019-11-08 13:37 ./usr/share/doc/roary/changelog.Debian.gz
-rw-r--r-- root/root     10620 2019-11-06 10:55 ./usr/share/doc/roary/changelog.gz
-rw-r--r-- root/root      1058 2019-11-08 13:36 ./usr/share/doc/roary/copyright
drwxr-xr-x root/root         0 2019-11-08 13:37 ./usr/share/lintian/
drwxr-xr-x root/root         0 2019-11-08 13:37 ./usr/share/lintian/overrides/
-rw-r--r-- root/root        70 2019-11-08 13:36 ./usr/share/lintian/overrides/roary
drwxr-xr-x root/root         0 2019-11-08 13:37 ./usr/share/man/
drwxr-xr-x root/root         0 2019-11-08 13:37 ./usr/share/man/man1/
-rw-r--r-- root/root      1108 2019-11-08 13:37 ./usr/share/man/man1/create_pan_genome.1p.gz
-rw-r--r-- root/root      1067 2019-11-08 13:37 ./usr/share/man/man1/create_pan_genome_plots.1p.gz
-rw-r--r-- root/root      1106 2019-11-08 13:37 ./usr/share/man/man1/extract_proteome_from_gff.1p.gz
-rw-r--r-- root/root      1079 2019-11-08 13:37 ./usr/share/man/man1/iterative_cdhit.1p.gz
-rw-r--r-- root/root      1135 2019-11-08 13:37 ./usr/share/man/man1/pan_genome_assembly_statistics.1p.gz
-rw-r--r-- root/root      1155 2019-11-08 13:37 ./usr/share/man/man1/pan_genome_core_alignment.1p.gz
-rw-r--r-- root/root      1105 2019-11-08 13:37 ./usr/share/man/man1/pan_genome_post_analysis.1p.gz
-rw-r--r-- root/root      1121 2019-11-08 13:37 ./usr/share/man/man1/pan_genome_reorder_spreadsheet.1p.gz
-rw-r--r-- root/root      1122 2019-11-08 13:37 ./usr/share/man/man1/parallel_all_against_all_blastp.1p.gz
-rw-r--r-- root/root      1149 2019-11-08 13:37 ./usr/share/man/man1/protein_alignment_from_nucleotides.1p.gz
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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: full
Build-Space: 10508
Build-Time: 20
Distribution: perl-5.40-throwaway
Host Architecture: amd64
Install-Time: 32
Job: /srv/debomatic/incoming/roary_3.13.0+dfsg-1.dsc
Machine Architecture: amd64
Package: roary
Package-Time: 57
Source-Version: 3.13.0+dfsg-1
Space: 10508
Status: successful
Version: 3.13.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2024-08-06T07:49:08Z
Build needed 00:00:57, 10508k disk space