sbuild (Debian sbuild) 0.88.2 (16 January 2025) on carme.larted.org.uk +==============================================================================+ | reprof 1.0.1-9 (amd64) Wed, 22 Jan 2025 11:34:57 +0000 | +==============================================================================+ Package: reprof Version: 1.0.1-9 Source Version: 1.0.1-9 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Wed, 22 Jan 2025 11:34:58 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup reprof_1.0.1-9 perl-5.40-throwaway amd64 --------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup reprof_1.0.1-9 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Wed, 22 Jan 2025 11:34:59 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3030 B] Get:2 http://deb.debian.org/debian unstable InRelease [205 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3030 B] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [144 kB] Get:5 file:/srv/reprepro perl-5.40/main amd64 Packages [8875 B] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [144 kB] Get:6 http://localhost:3142/debian sid InRelease [205 kB] Get:7 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [147 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2025-01-22-0806.21-F-2025-01-20-0805.29.pdiff [147 kB] Fetched 829 kB in 7s (126 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0t64 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2494 kB of archives. After this operation, 4096 B disk space will be freed. Get:1 http://deb.debian.org/debian unstable/main amd64 libapt-pkg6.0t64 amd64 2.9.24 [1114 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 apt amd64 2.9.24 [1380 kB] Fetched 2494 kB in 0s (59.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23043 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.24_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.24) over (2.9.23) ... Setting up libapt-pkg6.0t64:amd64 (2.9.24) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23043 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.24_amd64.deb ... Unpacking apt (2.9.24) over (2.9.23) ... Setting up apt (2.9.24) ... Processing triggers for libc-bin (2.40-5) ... +------------------------------------------------------------------------------+ | Fetch source files Wed, 22 Jan 2025 11:35:10 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/reprof_1.0.1-9.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 22 Jan 2025 11:35:10 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libmodule-build-perl, build-essential Filtered Build-Depends: debhelper-compat (= 13), libmodule-build-perl, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reprof-13ic7g/resolver-2lulsR/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reprof-13ic7g/resolver-2lulsR/apt_archive ./ InRelease Get:2 copy:/build/reprof-13ic7g/resolver-2lulsR/apt_archive ./ Release [609 B] Ign:3 copy:/build/reprof-13ic7g/resolver-2lulsR/apt_archive ./ Release.gpg Get:4 copy:/build/reprof-13ic7g/resolver-2lulsR/apt_archive ./ Sources [622 B] Get:5 copy:/build/reprof-13ic7g/resolver-2lulsR/apt_archive ./ Packages [661 B] Fetched 1892 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libmodule-build-perl libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libmodule-build-perl libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 20.3 MB of archives. After this operation, 76.3 MB of additional disk space will be used. Get:1 copy:/build/reprof-13ic7g/resolver-2lulsR/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [864 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-2 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libmodule-build-perl all 0.423400-2 [252 kB] Preconfiguring packages ... Fetched 20.3 MB in 0s (163 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 23043 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-1_amd64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... 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Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../29-libmodule-build-perl_0.423400-2_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../30-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libmodule-build-perl (0.423400-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-5) ... +------------------------------------------------------------------------------+ | Check architectures Wed, 22 Jan 2025 11:35:17 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Wed, 22 Jan 2025 11:35:17 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.11.10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1 (2024-11-23) amd64 (x86_64) Toolchain package versions: binutils_2.43.50.20250108-1 dpkg-dev_1.22.14 g++-13_13.3.0-12 g++-14_14.2.0-14 gcc-13_13.3.0-12 gcc-14_14.2.0-14 libc6-dev_2.40-5 libstdc++-13-dev_13.3.0-12 libstdc++-14-dev_14.2.0-14 libstdc++6_14.2.0-14 linux-libc-dev_6.12.10-1 Package versions: adduser_3.137 apt_2.9.24 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1 binutils_2.43.50.20250108-1 binutils-common_2.43.50.20250108-1 binutils-x86-64-linux-gnu_2.43.50.20250108-1 bsdextrautils_2.40.4-1 bsdutils_1:2.40.4-1 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-13_13.3.0-12 cpp-13-x86-64-linux-gnu_13.3.0-12 cpp-14_14.2.0-14 cpp-14-x86-64-linux-gnu_14.2.0-14 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-11 debconf_1.5.89 debhelper_13.24.1 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-1 diffutils_1:3.10-2 dirmngr_2.2.46-1+b1 dpkg_1.22.14 dpkg-dev_1.22.14 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-13_13.3.0-12 g++-13-x86-64-linux-gnu_13.3.0-12 g++-14_14.2.0-14 g++-14-x86-64-linux-gnu_14.2.0-14 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.3.0-12 gcc-13-base_13.3.0-12 gcc-13-x86-64-linux-gnu_13.3.0-12 gcc-14_14.2.0-14 gcc-14-base_14.2.0-14 gcc-14-x86-64-linux-gnu_14.2.0-14 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 gnupg_2.2.46-1 gnupg-l10n_2.2.46-1 gnupg-utils_2.2.46-1+b1 gpg_2.2.46-1+b1 gpg-agent_2.2.46-1+b1 gpg-wks-client_2.2.46-1+b1 gpgconf_2.2.46-1+b1 gpgsm_2.2.46-1+b1 gpgv_2.2.46-1+b1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.24 libarchive-zip-perl_1.68-1 libasan8_14.2.0-14 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-14 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b1 libbinutils_2.43.50.20250108-1 libblkid1_2.40.4-1 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-5 libc-dev-bin_2.40-5 libc-l10n_2.40-5 libc6_2.40-5 libc6-dev_2.40-5 libcap-ng0_0.8.5-4 libcap2_1:2.66-5+b1 libcc1-0_14.2.0-14 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.43.50.20250108-1 libctf0_2.43.50.20250108-1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdpkg-perl_1.22.14 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.1-1 libgcc-13-dev_13.3.0-12 libgcc-14-dev_14.2.0-14 libgcc-s1_14.2.0-14 libgcrypt20_1.11.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.8-2 libgomp1_14.2.0-14 libgpg-error0_1.51-3 libgprofng0_2.43.50.20250108-1 libhogweed6t64_3.10-1+b1 libhwasan0_14.2.0-14 libicu72_72.1-6 libidn2-0_2.3.7-2+b1 libisl23_0.27-1 libitm1_14.2.0-14 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 libldap-2.5-0_2.5.19+dfsg-1 libldap2_2.6.9+dfsg-1 liblsan0_14.2.0-14 liblz4-1_1.9.4-4 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmodule-build-perl_0.423400-2 libmount1_2.40.4-1 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncursesw6_6.5-2+b1 libnettle8t64_3.10-1+b1 libnpth0t64_1.8-2 libp11-kit0_0.25.5-3 libpam-modules_1.5.3-7+b1 libpam-modules-bin_1.5.3-7+b1 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7+b1 libpcre2-8-0_10.44-5 libperl5.38t64_5.38.2-5 libperl5.40_5.40.1-1 libpipeline1_1.5.8-1 libquadmath0_14.2.0-14 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-8+b1 libsasl2-modules-db_2.1.28+dfsg1-8+b1 libseccomp2_2.5.5-2 libselinux1_3.7-3+b1 libsemanage-common_3.7-2 libsemanage2_3.7-2+b1 libsepol2_3.7-1 libsframe1_2.43.50.20250108-1 libsmartcols1_2.40.4-1 libsqlite3-0_3.46.1-1 libssl3t64_3.4.0-2 libstdc++-13-dev_13.3.0-12 libstdc++-14-dev_14.2.0-14 libstdc++6_14.2.0-14 libsystemd0_257.2-2 libtasn1-6_4.19.0-3+b3 libtinfo6_6.5-2+b1 libtool_2.5.4-2 libtsan2_14.2.0-14 libubsan1_14.2.0-14 libuchardet0_0.0.8-1+b2 libudev1_257.2-2 libunistring5_1.3-1 libuuid1_2.40.4-1 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libxxhash0_0.8.3-2 libzstd1_1.5.6+dfsg-2 linux-libc-dev_6.12.10-1 locales-all_2.40-5 login_1:4.16.0-2+really2.40.4-1 login.defs_1:4.16.0-7 m4_1.4.19-5 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 openssl-provider-legacy_3.4.0-2 passwd_1:4.16.0-7 patch_2.7.6-7 perl_5.40.1-1 perl-base_5.40.1-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.1-1 pinentry-curses_1.3.1-2 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sqv_1.2.1-5 sysvinit-utils_3.13-1 tar_1.35+dfsg-3.1 usr-is-merged_39+nmu2 util-linux_2.40.4-1 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Wed, 22 Jan 2025 11:35:17 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: reprof Binary: reprof, librg-reprof-bundle-perl Architecture: all Version: 1.0.1-9 Maintainer: Debian Med Packaging Team Uploaders: Peter Hoenigschmid , Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/reprof Vcs-Git: https://salsa.debian.org/med-team/reprof.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, libai-fann-perl, pkg-perl-autopkgtest, pkg-perl-autopkgtest-heavy Build-Depends: debhelper-compat (= 13), libmodule-build-perl Package-List: librg-reprof-bundle-perl deb perl optional arch=all reprof deb science optional arch=all Checksums-Sha1: 7f85dbf7cba54eefde3189cce1eee150910f3c6c 9041799 reprof_1.0.1.orig.tar.gz f4529041e9fda8dec06f9cc8ecf7ba4de864f474 5796 reprof_1.0.1-9.debian.tar.xz Checksums-Sha256: a6ad4a0595e6a152612c9bcd6ab86f9f4c7a649c5aaed7e06bde611e2e9346c2 9041799 reprof_1.0.1.orig.tar.gz e212716c66c1754105d8a93dbd17a25f419e8ce035d23956d19a537af90406f1 5796 reprof_1.0.1-9.debian.tar.xz Files: 77e6f917af1667e93f5bae7c23f78d54 9041799 reprof_1.0.1.orig.tar.gz 5aa40a64f3605ad45684b287fa5dc5c2 5796 reprof_1.0.1-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdojU4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE0HQ//ZjAqh3W2XRj36uEhFASWLrfoPUo8jfdA Br16Jd3AshHThSjpPKEUoW8H/fS6svAPB85UUxBkwHlgVt/txVw1GDze5E/NtxVj o4KuujHxsarG7/IjOC9k1yKqqn996VFMUtiUJ7TKpXgA4hXmkehKZu2pMJAdG2It 8Zhsh5rWCM7ZHcBSDXciQke86mzFRfnkXnP3HjUCnwAs8AQdsIPLUlYRlSIGCoyQ 0XMCEW+d0N7IKTnFgri6zX0DWOIfKW6B78Tx3nTXN6m6ZumtHIgF03L7Zp/t2QBD N9XXWhsKoanOTO/p5FGp6JWJv51h9pUK+9aAquEeSebDZGn/E+D4+dxAoNPOwUiq DWUMclWpGUgXFWNFPmo9d+id6TvuLTwR8KyRj1KrcccOpYlkSlgQC1pU00ivAVYJ 1Qx9hP0uxGk/2sT2/YTHTDFRU2Ps7pr6/mh94HgkbRkBevIjnDqDOL4DwA56KCig zDcgM6WczsuI+q8UoqVf0OGR+YbM1MT6mwuItG1GHgQA71Erjru7oLmw3/Q8ZJx5 fs9QRP70dyjrw5WvzwekGeMOrbrxWuXNsmbOzMPjcMUlWIeaVozecTX12PdtJWgs sPWwp+9qxyGF/bSzeZijrRAi+zeee1p3CmrOwMQ/+pF3ONjuGT0sr08JbBhXvYVv H4gb4gE5It8= =2QBq -----END PGP SIGNATURE----- gpgv: Signature made Sun Dec 22 22:06:06 2024 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./reprof_1.0.1-9.dsc: no acceptable signature found dpkg-source: info: extracting reprof in /build/reprof-13ic7g/reprof-1.0.1 dpkg-source: info: unpacking reprof_1.0.1.orig.tar.gz dpkg-source: info: unpacking reprof_1.0.1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_pp-popcon.patch dpkg-source: info: applying update-model-files.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Wed, 22 Jan 2025 11:35:18 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network reprof_1.0.1-9 perl-5.40-throwaway amd64 --------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network reprof_1.0.1-9 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/reprof-13ic7g/reprof-1.0.1 SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-ff6ad0ec-e39f-4544-8ecc-f5e30dcf0520 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package reprof dpkg-buildpackage: info: source version 1.0.1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_testdir dh_auto_clean dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' find . -name Makefile -delete # restore reprof.spec which is removed in the build process if [ ! -e reprof.spec ] ; then sed 's/@VERSION@/1.0.1/' reprof.spec.in > reprof.spec ; fi dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/reprof.substvars debian/librg-reprof-bundle-perl.substvars debian/files rm -fr -- debian/reprof/ debian/tmp/ debian/librg-reprof-bundle-perl/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building reprof using existing ./reprof_1.0.1.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building reprof in reprof_1.0.1-9.debian.tar.xz dpkg-source: info: building reprof in reprof_1.0.1-9.dsc debian/rules binary dh binary dh_testdir dh_update_autotools_config dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Build.PL config.status: creating examples/Makefile config.status: creating lib/Makefile config.status: creating lib/RG/Makefile config.status: creating lib/RG/Reprof/Makefile config.status: creating reprof.spec config.status: creating scripts/Makefile config.status: creating share/Makefile debian/rules override_dh_auto_build make[1]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' # Build process somehow removes lib/RG/Reprof.pm # make sure it exists to be able to build twice in a row dh_auto_build make -j2 make[2]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' Making all in examples make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/examples' Making all in scripts make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' sed -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "reprof" | \ pod2man -c 'User Commands' -r "1.0.1" -name REPROF > "reprof.1" make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' Making all in lib make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib' Making all in RG make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' Making all in Reprof make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib' Making all in share make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' perl Build.PL installdirs=vendor && perl Build && touch build-stamp Can't find dist packages without a MANIFEST file Run 'Build manifest' to generate one WARNING: Possible missing or corrupt 'MANIFEST' file. Nothing to enter for 'provides' field in metafile. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'reprof' version '1.0.1' Building reprof make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' if [ ! -e lib/RG/Reprof.pm ] ; then cp lib/RG/Reprof.pm.mk lib/RG/Reprof.pm ; fi make[1]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' dh_auto_test make -j2 check "TESTSUITEFLAGS=-j2 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' Making check in examples make[2]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/examples' Making check in scripts make[2]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' Making check in lib make[2]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib' Making check in RG make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' Making check in Reprof make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[2]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib' Making check in share make[2]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[2]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' rm -fr -- /tmp/dh-xdg-rundir-3SkoG0vU create-stamp debian/debhelper-build-stamp dh_testroot dh_prep rm -f -- debian/reprof.substvars debian/librg-reprof-bundle-perl.substvars rm -fr -- debian/.debhelper/generated/reprof/ debian/reprof/ debian/tmp/ debian/.debhelper/generated/librg-reprof-bundle-perl/ debian/librg-reprof-bundle-perl/ dh_installdirs rm -f debian/librg-reprof-bundle-perl.debhelper.log debian/reprof.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' # The following will run: perl Build install dh_auto_install install -m0755 -d /build/reprof-13ic7g/reprof-1.0.1/debian/tmp make -j2 install DESTDIR=/build/reprof-13ic7g/reprof-1.0.1/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' Making install in examples make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/examples' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/examples' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' /usr/bin/install -c -m 644 ./example.Q ./example.Q.reprof ./example.fasta ./example.fasta.reprof ./mutations.txt ./mutations_example.Q.reprof ./mutations_example.Q.reprof_F172P ./mutations_example.Q.reprof_M1Q ./mutations_example.Q.reprof_N34Y ./mutations_example.Q.reprof_ORI '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/examples' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/examples' Making install in scripts make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' /usr/bin/mkdir -p '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c reprof '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/bin' make install-exec-hook make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/bin/reprof" /usr/bin/install -c -m 644 reprof.1 '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/man/man1' make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' make install-data-hook make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/man/man1/reprof.1" make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' Making install in lib make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib' Making install in RG make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' Making install in Reprof make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[6]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[6]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib' Making install in share make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/reprof' /usr/bin/install -c -m 644 ./a.model ./b.model ./bb.model ./bu.model ./fa.model ./fb.model ./fbb.model ./fbu.model ./fu.model ./fub.model ./fuu.model ./u.model ./ub.model ./uu.model ./a.features ./b.features ./bb.features ./bu.features ./fa.features ./fb.features ./fbb.features ./fbu.features ./fu.features ./fub.features ./fuu.features ./u.features ./ub.features ./uu.features '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/reprof' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' make[4]: Nothing to be done for 'install-exec-am'. perl Build install destdir=/build/reprof-13ic7g/reprof-1.0.1/debian/tmp create_packlist=0 Building reprof Installing /build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof.pm Installing /build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/Converter.pm Installing /build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/blastPsiMat.pm Installing /build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/fasta.pm Installing /build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/man/man3/RG::Reprof.3pm make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' # But we also need this to get the correct script DESTDIR=/build/reprof-13ic7g/reprof-1.0.1/debian/tmp make install make[2]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' Making install in examples make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/examples' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/examples' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' /usr/bin/install -c -m 644 ./example.Q ./example.Q.reprof ./example.fasta ./example.fasta.reprof ./mutations.txt ./mutations_example.Q.reprof ./mutations_example.Q.reprof_F172P ./mutations_example.Q.reprof_M1Q ./mutations_example.Q.reprof_N34Y ./mutations_example.Q.reprof_ORI '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/examples' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/examples' Making install in scripts make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' /usr/bin/mkdir -p '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/bin' /usr/bin/install -c reprof '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/bin' make install-exec-hook make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/bin/reprof" make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' /usr/bin/mkdir -p '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 reprof.1 '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/man/man1' make install-data-hook make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/man/man1/reprof.1" make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/scripts' Making install in lib make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib' Making install in RG make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' Making install in Reprof make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[6]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[6]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[5]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/lib' Making install in share make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/reprof' /usr/bin/install -c -m 644 ./a.model ./b.model ./bb.model ./bu.model ./fa.model ./fb.model ./fbb.model ./fbu.model ./fu.model ./fub.model ./fuu.model ./u.model ./ub.model ./uu.model ./a.features ./b.features ./bb.features ./bu.features ./fa.features ./fb.features ./fbb.features ./fbu.features ./fu.features ./fub.features ./fuu.features ./u.features ./ub.features ./uu.features '/build/reprof-13ic7g/reprof-1.0.1/debian/tmp/usr/share/reprof' make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' make[4]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' make[4]: Nothing to be done for 'install-exec-am'. perl Build install destdir=/build/reprof-13ic7g/reprof-1.0.1/debian/tmp create_packlist=0 Building reprof make[4]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' make[3]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' dh_install install -m0755 -d debian/reprof//usr cp --reflink=auto -a debian/tmp/usr/bin debian/reprof//usr/ install -m0755 -d debian/reprof//usr/share/doc/reprof cp --reflink=auto -a debian/tmp/usr/share/doc/reprof/examples debian/reprof//usr/share/doc/reprof/ install -m0755 -d debian/reprof//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/reprof//usr/share/man/ install -m0755 -d debian/librg-reprof-bundle-perl//usr/share cp --reflink=auto -a debian/tmp/usr/share/perl5 debian/tmp/usr/share/reprof debian/librg-reprof-bundle-perl//usr/share/ install -m0755 -d debian/librg-reprof-bundle-perl//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man3 debian/librg-reprof-bundle-perl//usr/share/man/ dh_installdocs install -m0755 -d debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/README.test debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/tests/installation-test debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/tests/test-models.t debian/reprof/usr/share/doc/reprof chmod -R u\+rw,go=rX debian/reprof/usr/share/doc install -p -m0644 debian/copyright debian/reprof/usr/share/doc/reprof/copyright install -m0755 -d debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl install -p -m0644 debian/copyright debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/copyright dh_installchangelogs install -m0755 -d debian/reprof/usr/share/doc/reprof install -p -m0644 debian/.debhelper/generated/reprof/dh_installchangelogs.dch.trimmed debian/reprof/usr/share/doc/reprof/changelog.Debian install -p -m0644 ./ChangeLog debian/reprof/usr/share/doc/reprof/changelog install -m0755 -d debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl install -p -m0644 debian/.debhelper/generated/librg-reprof-bundle-perl/dh_installchangelogs.dch.trimmed debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/changelog.Debian install -p -m0644 ./ChangeLog debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/changelog dh_installexamples dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm man-recode --to-code UTF-8 --suffix .dh-new debian/reprof/usr/share/man/man1/reprof.1 mv debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm.dh-new debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm chmod 0644 -- debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm mv debian/reprof/usr/share/man/man1/reprof.1.dh-new debian/reprof/usr/share/man/man1/reprof.1 chmod 0644 -- debian/reprof/usr/share/man/man1/reprof.1 dh_installcatalogs dh_installcron dh_installdebconf install -m0755 -d debian/reprof/DEBIAN install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installtmpfiles dh_installsystemd dh_installsystemduser dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installgsettings dh_installinitramfs dh_installalternatives dh_bugfiles dh_ucf dh_lintian dh_icons dh_perl mv debian/reprof.substvars.new debian/reprof.substvars mv debian/librg-reprof-bundle-perl.substvars.new debian/librg-reprof-bundle-perl.substvars rmdir --ignore-fail-on-non-empty --parents debian/librg-reprof-bundle-perl/usr/share/perl5 dh_usrlocal dh_link dh_installwm dh_installxfonts dh_strip_nondeterminism rm -f debian/librg-reprof-bundle-perl.debhelper.log debian/reprof.debhelper.log debian/rules override_dh_compress make[1]: Entering directory '/build/reprof-13ic7g/reprof-1.0.1' dh_compress -Xexample.Q cd debian/reprof cd debian/librg-reprof-bundle-perl chmod a-x usr/share/doc/reprof/changelog usr/share/doc/reprof/changelog.Debian usr/share/man/man1/reprof.1 chmod a-x usr/share/doc/librg-reprof-bundle-perl/changelog usr/share/doc/librg-reprof-bundle-perl/changelog.Debian usr/share/man/man3/RG::Reprof.3pm gzip -9nf usr/share/doc/reprof/changelog usr/share/doc/reprof/changelog.Debian usr/share/man/man1/reprof.1 gzip -9nf usr/share/doc/librg-reprof-bundle-perl/changelog usr/share/doc/librg-reprof-bundle-perl/changelog.Debian usr/share/man/man3/RG::Reprof.3pm cd '/build/reprof-13ic7g/reprof-1.0.1' cd '/build/reprof-13ic7g/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-13ic7g/reprof-1.0.1' dh_fixperms find debian/reprof ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librg-reprof-bundle-perl ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librg-reprof-bundle-perl/usr/share/doc -type f -a -true -a ! -regex 'debian/librg-reprof-bundle-perl/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof/usr/share/doc -type f -a -true -a ! -regex 'debian/reprof/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/reprof/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/librg-reprof-bundle-perl/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl/usr/share/perl5 -type f -perm -5 -name '*.pm' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a-X find debian/reprof -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_installdeb install -m0755 -d debian/reprof/DEBIAN install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN dh_gencontrol install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN echo misc:Depends= >> debian/librg-reprof-bundle-perl.substvars echo misc:Pre-Depends= >> debian/librg-reprof-bundle-perl.substvars dpkg-gencontrol -plibrg-reprof-bundle-perl -ldebian/changelog -Tdebian/librg-reprof-bundle-perl.substvars -cdebian/control -Pdebian/librg-reprof-bundle-perl install -m0755 -d debian/reprof/DEBIAN echo misc:Depends= >> debian/reprof.substvars echo misc:Pre-Depends= >> debian/reprof.substvars dpkg-gencontrol -preprof -ldebian/changelog -Tdebian/reprof.substvars -cdebian/control -Pdebian/reprof chmod 0644 -- debian/reprof/DEBIAN/control chmod 0644 -- debian/librg-reprof-bundle-perl/DEBIAN/control dh_md5sums install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN install -m0755 -d debian/reprof/DEBIAN cd debian/reprof >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/librg-reprof-bundle-perl >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/reprof/DEBIAN/md5sums chmod 0644 -- debian/librg-reprof-bundle-perl/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/reprof .. dpkg-deb: building package 'reprof' in '../reprof_1.0.1-9_all.deb'. dpkg-deb --root-owner-group --build debian/librg-reprof-bundle-perl .. dpkg-deb: building package 'librg-reprof-bundle-perl' in '../librg-reprof-bundle-perl_1.0.1-9_all.deb'. dpkg-genbuildinfo -O../reprof_1.0.1-9_amd64.buildinfo dpkg-genchanges -O../reprof_1.0.1-9_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-01-22T11:36:14Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 22 Jan 2025 11:36:15 +0000 | +------------------------------------------------------------------------------+ reprof_1.0.1-9_amd64.changes: ----------------------------- Format: 1.8 Date: Sun, 22 Dec 2024 23:03:14 +0100 Source: reprof Binary: librg-reprof-bundle-perl reprof Architecture: source all Version: 1.0.1-9 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: librg-reprof-bundle-perl - protein secondary structure and accessibility predictor (perl mod reprof - protein secondary structure and accessibility predictor Closes: 1045897 1049597 Changes: reprof (1.0.1-9) unstable; urgency=medium . * Revert: Add missing build dependency on dh addon. * Drop restriction needs-recommends * Fix clean target Closes: #1045897, #1049597 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 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5aa40a64f3605ad45684b287fa5dc5c2 5796 science optional reprof_1.0.1-9.debian.tar.xz 3476e2ef5458bf5465ac5166fe7322d1 7479384 perl optional librg-reprof-bundle-perl_1.0.1-9_all.deb 3a9765655a26920b4ee1f5ef136c3c5a 14272 science optional reprof_1.0.1-9_all.deb e88c80e0a52ec6204090d6076284061e 5403 science optional reprof_1.0.1-9_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Wed, 22 Jan 2025 11:36:15 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: reprof Binary: librg-reprof-bundle-perl reprof Architecture: all source Version: 1.0.1-9 Checksums-Md5: 1c1f97ebb1f344f97a6133715dc42a53 1300 reprof_1.0.1-9.dsc 3476e2ef5458bf5465ac5166fe7322d1 7479384 librg-reprof-bundle-perl_1.0.1-9_all.deb 3a9765655a26920b4ee1f5ef136c3c5a 14272 reprof_1.0.1-9_all.deb Checksums-Sha1: ecf2baeac6cb8204688da9ed8a14d640db4172c6 1300 reprof_1.0.1-9.dsc e8b692c5e5bd36b0b6279a425be384d310cfb288 7479384 librg-reprof-bundle-perl_1.0.1-9_all.deb 5a62c8f593a940ee663cd9e8c2480070e5194731 14272 reprof_1.0.1-9_all.deb Checksums-Sha256: edd014b0e4244f4263f3ee4633df54ce36a06389a187a2b696799f7325a0d84d 1300 reprof_1.0.1-9.dsc 035b394394d7d655d8b439f5ae31c13a8c755a6e0fccabeea27bafcc54822101 7479384 librg-reprof-bundle-perl_1.0.1-9_all.deb 091b80b0bb433e6cbe457f45f5b5fd313d18edc078d2c6de8783bb5d6b3b938f 14272 reprof_1.0.1-9_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 22 Jan 2025 11:36:14 +0000 Build-Path: /build/reprof-13ic7g/reprof-1.0.1 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.23.1-1), autotools-dev (= 20220109.1), base-files (= 13.6), base-passwd (= 3.6.6), bash (= 5.2.37-1), binutils (= 2.43.50.20250108-1), binutils-common (= 2.43.50.20250108-1), binutils-x86-64-linux-gnu (= 2.43.50.20250108-1), bsdextrautils (= 2.40.4-1), bsdutils (= 1:2.40.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.5-1+b1), cpp (= 4:14.2.0-1), cpp-13 (= 13.3.0-12), cpp-13-x86-64-linux-gnu (= 13.3.0-12), cpp-14 (= 14.2.0-14), cpp-14-x86-64-linux-gnu (= 14.2.0-14), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-11), debconf (= 1.5.89), debhelper (= 13.24.1), debianutils (= 5.21), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-1), diffutils (= 1:3.10-2), dpkg (= 1.22.14), dpkg-dev (= 1.22.14), dwz (= 0.15-1+b1), file (= 1:5.45-3+b1), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-14), g++-14-x86-64-linux-gnu (= 14.2.0-14), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-13 (= 13.3.0-12), gcc-13-base (= 13.3.0-12), gcc-13-x86-64-linux-gnu (= 13.3.0-12), gcc-14 (= 14.2.0-14), gcc-14-base (= 14.2.0-14), gcc-14-x86-64-linux-gnu (= 14.2.0-14), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-14), libatomic1 (= 14.2.0-14), libattr1 (= 1:2.5.2-2), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b1), libbinutils (= 2.43.50.20250108-1), libblkid1 (= 2.40.4-1), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-5), libc-dev-bin (= 2.40-5), libc6 (= 2.40-5), libc6-dev (= 2.40-5), libcap-ng0 (= 0.8.5-4), libcap2 (= 1:2.66-5+b1), libcc1-0 (= 14.2.0-14), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.43.50.20250108-1), libctf0 (= 2.43.50.20250108-1), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.277), libdebhelper-perl (= 13.24.1), libdpkg-perl (= 1.22.14), libelf1t64 (= 0.192-4), libfile-stripnondeterminism-perl (= 1.14.1-1), libgcc-13-dev (= 13.3.0-12), libgcc-14-dev (= 14.2.0-14), libgcc-s1 (= 14.2.0-14), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 14.2.0-14), libgprofng0 (= 2.43.50.20250108-1), libhwasan0 (= 14.2.0-14), libicu72 (= 72.1-6), libisl23 (= 0.27-1), libitm1 (= 14.2.0-14), libjansson4 (= 2.14-2+b3), liblsan0 (= 14.2.0-14), liblzma5 (= 5.6.3-1+b1), libmagic-mgc (= 1:5.45-3+b1), libmagic1t64 (= 1:5.45-3+b1), libmd0 (= 1.1.0-2+b1), libmodule-build-perl (= 0.423400-2), libmount1 (= 2.40.4-1), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.1-1+b2), libpam-modules (= 1.5.3-7+b1), libpam-modules-bin (= 1.5.3-7+b1), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7+b1), libpcre2-8-0 (= 10.44-5), libperl5.40 (= 5.40.1-1), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-14), libseccomp2 (= 2.5.5-2), libselinux1 (= 3.7-3+b1), libsframe1 (= 2.43.50.20250108-1), libsmartcols1 (= 2.40.4-1), libssl3t64 (= 3.4.0-2), libstdc++-14-dev (= 14.2.0-14), libstdc++6 (= 14.2.0-14), libsystemd0 (= 257.2-2), libtinfo6 (= 6.5-2+b1), libtool (= 2.5.4-2), libtsan2 (= 14.2.0-14), libubsan1 (= 14.2.0-14), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.2-2), libunistring5 (= 1.3-1), libuuid1 (= 2.40.4-1), libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1), libzstd1 (= 1.5.6+dfsg-2), linux-libc-dev (= 6.12.10-1), m4 (= 1.4.19-5), make (= 4.4.1-1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2+b1), openssl-provider-legacy (= 3.4.0-2), patch (= 2.7.6-7), perl (= 5.40.1-1), perl-base (= 5.40.1-1), perl-modules-5.40 (= 5.40.1-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.13-1), tar (= 1.35+dfsg-3.1), util-linux (= 2.40.4-1), xz-utils (= 5.6.3-1+b1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1734904994" +------------------------------------------------------------------------------+ | Package contents Wed, 22 Jan 2025 11:36:15 +0000 | +------------------------------------------------------------------------------+ librg-reprof-bundle-perl_1.0.1-9_all.deb ---------------------------------------- new Debian package, version 2.0. size 7479384 bytes: control archive=1588 bytes. 726 bytes, 18 lines control 2337 bytes, 36 lines md5sums Package: librg-reprof-bundle-perl Source: reprof Version: 1.0.1-9 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 21253 Depends: perl:any, libai-fann-perl Section: perl Priority: optional Homepage: https://rostlab.org/ Description: protein secondary structure and accessibility predictor (perl module) 'reprof' is an improved implementation of 'prof', a popular protein secondary structure and accessibility predictor. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance. . This package provides the perl modules implementing 'reprof' along with the necessary data files. drwxr-xr-x root/root 0 2024-12-22 22:03 ./ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/doc/librg-reprof-bundle-perl/ -rw-r--r-- root/root 756 2024-12-22 22:03 ./usr/share/doc/librg-reprof-bundle-perl/changelog.Debian.gz -rw-r--r-- root/root 265 2012-01-13 15:41 ./usr/share/doc/librg-reprof-bundle-perl/changelog.gz -rw-r--r-- root/root 1357 2024-12-22 22:03 ./usr/share/doc/librg-reprof-bundle-perl/copyright drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/man/ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/man/man3/ -rw-r--r-- root/root 1787 2024-12-22 22:03 ./usr/share/man/man3/RG::Reprof.3pm.gz drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/perl5/ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/perl5/RG/ -rw-r--r-- root/root 18542 2024-12-22 22:03 ./usr/share/perl5/RG/Reprof.pm drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/perl5/RG/Reprof/ -rw-r--r-- root/root 5667 2024-12-22 22:03 ./usr/share/perl5/RG/Reprof/Converter.pm -rw-r--r-- root/root 1905 2024-12-22 22:03 ./usr/share/perl5/RG/Reprof/blastPsiMat.pm -rw-r--r-- root/root 6000 2024-12-22 22:03 ./usr/share/perl5/RG/Reprof/fasta.pm drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/reprof/ -rw-r--r-- root/root 459 2024-12-22 22:03 ./usr/share/reprof/a.features -rw-r--r-- root/root 1128778 2024-12-22 22:03 ./usr/share/reprof/a.model -rw-r--r-- root/root 454 2024-12-22 22:03 ./usr/share/reprof/b.features -rw-r--r-- root/root 1158427 2024-12-22 22:03 ./usr/share/reprof/b.model -rw-r--r-- root/root 523 2024-12-22 22:03 ./usr/share/reprof/bb.features -rw-r--r-- root/root 2646384 2024-12-22 22:03 ./usr/share/reprof/bb.model -rw-r--r-- root/root 523 2024-12-22 22:03 ./usr/share/reprof/bu.features -rw-r--r-- root/root 2571822 2024-12-22 22:03 ./usr/share/reprof/bu.model -rw-r--r-- root/root 402 2024-12-22 22:03 ./usr/share/reprof/fa.features -rw-r--r-- root/root 566486 2024-12-22 22:03 ./usr/share/reprof/fa.model -rw-r--r-- root/root 391 2024-12-22 22:03 ./usr/share/reprof/fb.features -rw-r--r-- root/root 969013 2024-12-22 22:03 ./usr/share/reprof/fb.model -rw-r--r-- root/root 461 2024-12-22 22:03 ./usr/share/reprof/fbb.features -rw-r--r-- root/root 1439947 2024-12-22 22:03 ./usr/share/reprof/fbb.model -rw-r--r-- root/root 461 2024-12-22 22:03 ./usr/share/reprof/fbu.features -rw-r--r-- root/root 866249 2024-12-22 22:03 ./usr/share/reprof/fbu.model -rw-r--r-- root/root 392 2024-12-22 22:03 ./usr/share/reprof/fu.features -rw-r--r-- root/root 1814340 2024-12-22 22:03 ./usr/share/reprof/fu.model -rw-r--r-- root/root 462 2024-12-22 22:03 ./usr/share/reprof/fub.features -rw-r--r-- root/root 424211 2024-12-22 22:03 ./usr/share/reprof/fub.model -rw-r--r-- root/root 462 2024-12-22 22:03 ./usr/share/reprof/fuu.features -rw-r--r-- root/root 1713895 2024-12-22 22:03 ./usr/share/reprof/fuu.model -rw-r--r-- root/root 454 2024-12-22 22:03 ./usr/share/reprof/u.features -rw-r--r-- root/root 1589338 2024-12-22 22:03 ./usr/share/reprof/u.model -rw-r--r-- root/root 523 2024-12-22 22:03 ./usr/share/reprof/ub.features -rw-r--r-- root/root 2863605 2024-12-22 22:03 ./usr/share/reprof/ub.model -rw-r--r-- root/root 523 2024-12-22 22:03 ./usr/share/reprof/uu.features -rw-r--r-- root/root 1935481 2024-12-22 22:03 ./usr/share/reprof/uu.model reprof_1.0.1-9_all.deb ---------------------- new Debian package, version 2.0. size 14272 bytes: control archive=1188 bytes. 746 bytes, 18 lines control 1401 bytes, 18 lines md5sums Package: reprof Version: 1.0.1-9 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 98 Depends: perl:any, librg-reprof-bundle-perl Section: science Priority: optional Homepage: https://rostlab.org/ Description: protein secondary structure and accessibility predictor 'reprof' is an improved implementation of 'prof', a popular protein secondary structure and accessibility predictor. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance. . This package provides the 'reprof' command. It is only a command line interface to the functionality provided by the modules in librg-reprof-bundle-perl. drwxr-xr-x root/root 0 2024-12-22 22:03 ./ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/bin/ -rwxr-xr-x root/root 3977 2024-12-22 22:03 ./usr/bin/reprof drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/doc/reprof/ -rw-r--r-- root/root 1265 2024-12-22 22:03 ./usr/share/doc/reprof/README.test -rw-r--r-- root/root 745 2024-12-22 22:03 ./usr/share/doc/reprof/changelog.Debian.gz -rw-r--r-- root/root 265 2012-01-13 15:41 ./usr/share/doc/reprof/changelog.gz -rw-r--r-- root/root 1357 2024-12-22 22:03 ./usr/share/doc/reprof/copyright drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/doc/reprof/examples/ -rw-r--r-- root/root 28389 2024-12-22 22:03 ./usr/share/doc/reprof/examples/example.Q -rw-r--r-- root/root 5957 2024-12-22 22:03 ./usr/share/doc/reprof/examples/example.Q.reprof -rw-r--r-- root/root 182 2024-12-22 22:03 ./usr/share/doc/reprof/examples/example.fasta -rw-r--r-- root/root 6017 2024-12-22 22:03 ./usr/share/doc/reprof/examples/example.fasta.reprof -rw-r--r-- root/root 15 2024-12-22 22:03 ./usr/share/doc/reprof/examples/mutations.txt -rw-r--r-- root/root 5957 2024-12-22 22:03 ./usr/share/doc/reprof/examples/mutations_example.Q.reprof -rw-r--r-- root/root 6019 2024-12-22 22:03 ./usr/share/doc/reprof/examples/mutations_example.Q.reprof_F172P -rw-r--r-- root/root 6016 2024-12-22 22:03 ./usr/share/doc/reprof/examples/mutations_example.Q.reprof_M1Q -rw-r--r-- root/root 6011 2024-12-22 22:03 ./usr/share/doc/reprof/examples/mutations_example.Q.reprof_N34Y -rw-r--r-- root/root 6017 2024-12-22 22:03 ./usr/share/doc/reprof/examples/mutations_example.Q.reprof_ORI -rw-r--r-- root/root 1783 2024-12-22 22:03 ./usr/share/doc/reprof/installation-test -rw-r--r-- root/root 560 2024-12-22 22:03 ./usr/share/doc/reprof/test-models.t drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/man/ drwxr-xr-x root/root 0 2024-12-22 22:03 ./usr/share/man/man1/ -rw-r--r-- root/root 2179 2024-12-22 22:03 ./usr/share/man/man1/reprof.1.gz +------------------------------------------------------------------------------+ | Post Build Wed, 22 Jan 2025 11:36:16 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 22 Jan 2025 11:36:16 +0000 | +------------------------------------------------------------------------------+ Purging /build/reprof-13ic7g Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 22 Jan 2025 11:36:16 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 94496 Build-Time: 56 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 7 Job: /srv/debomatic/incoming/reprof_1.0.1-9.dsc Machine Architecture: amd64 Package: reprof Package-Time: 77 Source-Version: 1.0.1-9 Space: 94496 Status: successful Version: 1.0.1-9 -------------------------------------------------------------------------------- Finished at 2025-01-22T11:36:14Z Build needed 00:01:17, 94496k disk space