sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk +==============================================================================+ | prokka 1.14.6+dfsg-6 (amd64) Wed, 05 Jun 2024 02:05:49 +0000 | +==============================================================================+ Package: prokka Version: 1.14.6+dfsg-6 Source Version: 1.14.6+dfsg-6 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-35d94b53-7ef4-416d-afe4-72ae26cd585e' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup prokka_1.14.6+dfsg-6 perl-5.40-throwaway amd64 --------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup prokka_1.14.6+dfsg-6 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/prokka-EyeeiI/resolver-R0xXtD' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:2 http://localhost:3142/debian unstable InRelease [198 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:3 http://localhost:3142/debian sid InRelease [198 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-04-2004.04-F-2024-06-03-0205.12.pdiff [98.7 kB] Get:6 file:/srv/reprepro perl-5.40/main amd64 Packages [598 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-04-2004.04-F-2024-06-03-0205.12.pdiff [98.7 kB] Get:7 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2024-06-04-2004.04-F-2024-06-03-0205.12.pdiff [66.4 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2024-06-04-2004.04-F-2024-06-03-0205.12.pdiff [66.4 kB] Fetched 689 kB in 2s (312 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 login passwd util-linux 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3414 kB of archives. After this operation, 57.3 kB disk space will be freed. Get:1 http://localhost:3142/debian unstable/main amd64 bsdutils amd64 1:2.40.1-8 [104 kB] Get:2 http://localhost:3142/debian unstable/main amd64 login amd64 1:4.13+dfsg1-5 [590 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libsmartcols1 amd64 2.40.1-8 [137 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libuuid1 amd64 2.40.1-8 [34.7 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libblkid1 amd64 2.40.1-8 [166 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libmount1 amd64 2.40.1-8 [197 kB] Get:7 http://localhost:3142/debian unstable/main amd64 util-linux amd64 2.40.1-8 [1210 kB] Get:8 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.13+dfsg1-5 [974 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3414 kB in 0s (103 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.38-12) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/prokka_1.14.6+dfsg-6.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/prokka-EyeeiI/prokka-1.14.6+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/prokka-EyeeiI' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libswiss-perl, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libswiss-perl, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [632 B] Get:5 copy:/<>/apt_archive ./ Packages [664 B] Fetched 1905 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libswiss-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libswiss-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB of archives. After this operation, 77.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [892 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.1-8 [96.0 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:24 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3 [670 kB] Get:27 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:28 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://localhost:3142/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:32 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libswiss-perl all 1.80-1 [776 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 0s (162 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 21765 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.1-8_amd64.deb ... Unpacking bsdextrautils (2.40.1-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... 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Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg-3_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg-3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libfakeroot:amd64. Preparing to unpack .../29-libfakeroot_1.34-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.34-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../30-fakeroot_1.34-1_amd64.deb ... Unpacking fakeroot (1.34-1) ... Selecting previously unselected package libswiss-perl. Preparing to unpack .../31-libswiss-perl_1.80-1_all.deb ... Unpacking libswiss-perl (1.80-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../32-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libswiss-perl (1.80-1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-12 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.12-1 Package versions: adduser_3.137 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40.1-8 bsdutils_1:2.40.1-8 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-x86-64-linux-gnu_13.2.0-25 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-x86-64-linux-gnu_13.2.0-25 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 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libhogweed6t64_3.9.1-2.2 libhwasan0_14.1.0-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libisl23_0.26-3+b2 libitm1_14.1.0-1 libjansson4_2.14-2+b2 libksba8_1.6.6-1 libldap-2.5-0_2.5.17+dfsg-1+b1 liblsan0_14.1.0-1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.1-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.9.1-2.2 libnpth0t64_1.6-3.1 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0~rc1-1 libpipeline1_1.5.7-2 libquadmath0_14.1.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.40.1-8 libsqlite3-0_3.46.0-1 libssl3t64_3.2.1-3 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 libswiss-perl_1.80-1 libsystemd0_256~rc3-7 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.1.0-1 libubsan1_14.1.0-1 libuchardet0_0.0.8-1+b1 libudev1_256~rc3-7 libunistring5_1.2-1 libuuid1_2.40.1-8 libxml2_2.12.7+dfsg-3 libxxhash0_0.8.2-2+b1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.12-1 locales-all_2.38-12 login_1:4.13+dfsg1-5 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.13+dfsg1-5 patch_2.7.6-7 perl_5.40.0~rc1-1 perl-base_5.40.0~rc1-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0~rc1-1 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.1-8 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: prokka Binary: prokka Architecture: all Version: 1.14.6+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/tseemann/prokka Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/prokka Vcs-Git: https://salsa.debian.org/med-team/prokka.git Testsuite: autopkgtest Testsuite-Triggers: bash, ca-certificates, wget Build-Depends: debhelper-compat (= 13), libswiss-perl Package-List: prokka deb science optional arch=all Checksums-Sha1: 8220113defb56737c4273f124b7eec7e0d1909ea 9926632 prokka_1.14.6+dfsg.orig.tar.xz 1cf50f3b6b1840f36df9346b0feb15bb1e3f8a71 5481012 prokka_1.14.6+dfsg-6.debian.tar.xz Checksums-Sha256: e8ca7df48559a1861b4a1e65570acab9385db81f9cebb884703db9ab22dd343e 9926632 prokka_1.14.6+dfsg.orig.tar.xz c65a7ac8275d53d5efc4a84c8a720118c564467ea88bd86c29ca516b023a58fd 5481012 prokka_1.14.6+dfsg-6.debian.tar.xz Files: 2fc2b5d91de8453da49e3bc22db653df 9926632 prokka_1.14.6+dfsg.orig.tar.xz d8d2d108c2d48f8d953a86c549d433e5 5481012 prokka_1.14.6+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmUF3KgACgkQPCZ2P2xn 5uJDbA/+J4wQ4surVVqJhrIhbvj1f9LoLQ61bwaVDe+QqWY8OSiuTdX+0dWH9W28 /q3X+ltlgFI4Hy04F1+06/XgjoJzwaPAfglyjlatDEDclB5mCSQJ8ODN28jAK+UW FxQM+MAprtA4z2xbuQgnKQhFJnuIDaFl5vmBBBqPOOryfb50wxqwPld/NSccoId0 w0qo5+VWiJOnB5sazAdkpKEPAoRYdj1okodsQAHaI9fkEU+VAe5voon1DNK55iim wunVog5+8sxNpwOMydy7LvUe0GxH4IZmwLPVdsXcXykeeFPZ/UJzjSkf8TUzPHS+ EkHePhw5f9ICd8AF8rkCz3lETalwPmzRS+rTF5y0V0AVIHx8lwhUu+XHh5mDEaRV ZQucuqNMwfeshOsdIiWtEQc5E0QcfNx3gUuJEvSXtUGWDC6n2uHSXSvlebRw/4ni 6s0z+Q6MQNg104hI/LxrAYQJdzX2Jq02qr0JUOUNAT0CRbVqwTSWiFgVp7SNz+O1 e2e4z3meVvem6+HyTxVPw2aHWL6ihm6/nMV+bwtF5EbMgD/KS7j7dQkSXQyl3u5I xdAJm+DgQ0Ssxfn8/YQ8fUdfVfe77i4/1Xw2oX2bS9kRt4lkYBVU0/HigaeC9q63 FRYxcC9gW1nXuPDnR7+WEH+SAkIE65zlJCsTFg6nAjN4Kf0Oh3M= =M7tr -----END PGP SIGNATURE----- gpgv: Signature made Sat Sep 16 16:49:44 2023 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./prokka_1.14.6+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting prokka in /<> dpkg-source: info: unpacking prokka_1.14.6+dfsg.orig.tar.xz dpkg-source: info: unpacking prokka_1.14.6+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying kingdom_dbs_free dpkg-source: info: applying set-db-dir dpkg-source: info: applying hmmer_not_hmmer3 Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network prokka_1.14.6+dfsg-6 perl-5.40-throwaway amd64 --------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network prokka_1.14.6+dfsg-6 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-35d94b53-7ef4-416d-afe4-72ae26cd585e SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package prokka dpkg-buildpackage: info: source version 1.14.6+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building prokka using existing ./prokka_1.14.6+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building prokka in prokka_1.14.6+dfsg-6.debian.tar.xz dpkg-source: info: building prokka in prokka_1.14.6+dfsg-6.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/prokka/ debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl debian/rules override_dh_link make[1]: Entering directory '/<>' for db in `find debian/prokka/usr/share/prokka/db -type f` ; do \ vardir=`echo ${db} | sed -e 's?.*/usr/share?/var/lib?'` ; \ mkdir -p debian/prokka/`dirname ${vardir}` ; \ usrdir=`echo ${db} | sed -e 's?.*/usr?/usr?'` ; \ dh_link ${usrdir} ${vardir} ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'prokka' in '../prokka_1.14.6+dfsg-6_all.deb'. dpkg-genbuildinfo -O../prokka_1.14.6+dfsg-6_amd64.buildinfo dpkg-genchanges -O../prokka_1.14.6+dfsg-6_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-06-05T02:06:31Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ prokka_1.14.6+dfsg-6_amd64.changes: ----------------------------------- Format: 1.8 Date: Sat, 16 Sep 2023 18:45:50 +0200 Source: prokka Binary: prokka Architecture: source all Version: 1.14.6+dfsg-6 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: prokka - rapid annotation of prokaryotic genomes Changes: prokka (1.14.6+dfsg-6) unstable; urgency=medium . * d/control: update homepage to a working URL. * d/copyright: update my email address * d/patches/kingdom_dbs_free: restore the kingdom DBs using a CC-BY- 4.0 licensed release of uniprot. * Standards-Version: 4.6.2 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. 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optional prokka_1.14.6+dfsg-6_all.deb 4273db4f5f7d4352f991eaacd2dad367 4936 science optional prokka_1.14.6+dfsg-6_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: prokka Binary: prokka Architecture: all source Version: 1.14.6+dfsg-6 Checksums-Md5: 67f435eae4f1120c8cac4f24a3c2248c 1185 prokka_1.14.6+dfsg-6.dsc 3ac84a0bfd45f72543495c419ccbef9b 15212492 prokka_1.14.6+dfsg-6_all.deb Checksums-Sha1: 71d6e8baa5ca4fbc87d0fa5b1045c78999264a30 1185 prokka_1.14.6+dfsg-6.dsc 7a9ddbb296a65da8241c5479987d02a63543aa69 15212492 prokka_1.14.6+dfsg-6_all.deb Checksums-Sha256: b89a65d6d38e209d2cc521838f11c3ff198457c1830d19d04cecebc7570dbeba 1185 prokka_1.14.6+dfsg-6.dsc d88987f1153b8397f081dc8c28067bfb2e7ee8c52b92159cdb7aea5d19af6746 15212492 prokka_1.14.6+dfsg-6_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 05 Jun 2024 02:06:31 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.2), base-passwd (= 3.6.3), bash (= 5.2.21-2+b1), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40.1-8), bsdutils (= 1:2.40.1-8), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-25), cpp-13-x86-64-linux-gnu (= 13.2.0-25), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-8), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-6), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-25), g++-13-x86-64-linux-gnu (= 13.2.0-25), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-25), gcc-13-base (= 13.2.0-25), gcc-13-x86-64-linux-gnu (= 13.2.0-25), gcc-14-base (= 14.1.0-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-4), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.1.0-1), libatomic1 (= 14.1.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.40.1-8), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.38-12), libc-dev-bin (= 2.38-12), libc6 (= 2.38-12), libc6-dev (= 2.38-12), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.1.0-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.2.0-25), libgcc-s1 (= 14.1.0-1), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.1.0-1), libgprofng0 (= 2.42-4), libhwasan0 (= 14.1.0-1), libicu72 (= 72.1-4+b1), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.1.0-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.1-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0~rc1-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.1.0-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40.1-8), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-25), libstdc++6 (= 14.1.0-1), libswiss-perl (= 1.80-1), libsystemd0 (= 256~rc3-7), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.1.0-1), libubsan1 (= 14.1.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256~rc3-7), libunistring5 (= 1.2-1), libuuid1 (= 2.40.1-8), libxml2 (= 2.12.7+dfsg-3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.12-1), login (= 1:4.13+dfsg1-5), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), patch (= 2.7.6-7), perl (= 5.40.0~rc1-1), perl-base (= 5.40.0~rc1-1), perl-modules-5.40 (= 5.40.0~rc1-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.1-8), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1694882750" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ prokka_1.14.6+dfsg-6_all.deb ---------------------------- new Debian package, version 2.0. size 15212492 bytes: control archive=1928 bytes. 750 bytes, 14 lines control 2994 bytes, 41 lines md5sums Package: prokka Version: 1.14.6+dfsg-6 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 106501 Depends: perl:any, parallel, libbio-perl-perl, ncbi-blast+, hmmer, aragorn, prodigal, ncbi-tools-bin, infernal, libswiss-perl, libxml-simple-perl, default-jre, less, libbio-searchio-hmmer-perl Section: science Priority: optional Homepage: https://github.com/tseemann/prokka Description: rapid annotation of prokaryotic genomes A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA. drwxr-xr-x root/root 0 2023-09-16 16:45 ./ drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/bin/ -rwxr-xr-x root/root 63171 2023-09-16 16:45 ./usr/bin/prokka -rwxr-xr-x root/root 3600 2023-09-16 16:45 ./usr/bin/prokka-biocyc_to_fasta_db -rwxr-xr-x root/root 4152 2023-09-16 16:45 ./usr/bin/prokka-cdd_to_hmm -rwxr-xr-x root/root 3137 2023-09-16 16:45 ./usr/bin/prokka-clusters_to_hmm -rwxr-xr-x root/root 4745 2023-09-16 16:45 ./usr/bin/prokka-genbank_to_fasta_db -rwxr-xr-x root/root 2927 2023-09-16 16:45 ./usr/bin/prokka-genpept_to_fasta_db -rwxr-xr-x root/root 4240 2023-09-16 16:45 ./usr/bin/prokka-hamap_to_hmm -rwxr-xr-x root/root 4027 2023-09-16 16:45 ./usr/bin/prokka-uniprot_to_fasta_db drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/doc/prokka/ -rw-r--r-- root/root 310 2023-09-16 16:45 ./usr/share/doc/prokka/NEWS.Debian.gz -rw-r--r-- root/root 342 2023-09-14 19:18 ./usr/share/doc/prokka/README.Debian -rw-r--r-- root/root 8710 2020-02-20 05:12 ./usr/share/doc/prokka/README.md.gz -rw-r--r-- root/root 1193 2023-09-16 16:45 ./usr/share/doc/prokka/changelog.Debian.gz -rw-r--r-- root/root 4374 2020-02-20 05:12 ./usr/share/doc/prokka/changelog.gz -rw-r--r-- root/root 27206 2023-09-16 16:45 ./usr/share/doc/prokka/copyright -rw-r--r-- root/root 778 2023-09-16 16:44 ./usr/share/doc/prokka/get-additional-data drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/man/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/man/man1/ -rw-r--r-- root/root 505 2023-09-16 16:45 ./usr/share/man/man1/prokka-biocyc_to_fasta_db.1.gz -rw-r--r-- root/root 408 2023-09-16 16:45 ./usr/share/man/man1/prokka-cdd_to_hmm.1.gz -rw-r--r-- root/root 390 2023-09-16 16:45 ./usr/share/man/man1/prokka-clusters_to_hmm.1.gz -rw-r--r-- root/root 511 2023-09-16 16:45 ./usr/share/man/man1/prokka-genbank_to_fasta_db.1.gz -rw-r--r-- root/root 483 2023-09-16 16:45 ./usr/share/man/man1/prokka-genpept_to_fasta_db.1.gz -rw-r--r-- root/root 443 2023-09-16 16:45 ./usr/share/man/man1/prokka-hamap_to_hmm.1.gz -rw-r--r-- root/root 544 2023-09-16 16:45 ./usr/share/man/man1/prokka-uniprot_to_fasta_db.1.gz -rw-r--r-- root/root 1275 2023-09-16 16:45 ./usr/share/man/man1/prokka.1.gz drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/prokka/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/prokka/db/ drwxr-xr-x root/root 0 2020-02-20 05:12 ./usr/share/prokka/db/cm/ -rw-r--r-- root/root 6673086 2020-02-20 05:12 ./usr/share/prokka/db/cm/Archaea -rw-r--r-- root/root 71161839 2020-02-20 05:12 ./usr/share/prokka/db/cm/Bacteria -rw-r--r-- root/root 893 2020-02-20 05:12 ./usr/share/prokka/db/cm/README -rw-r--r-- root/root 12330375 2020-02-20 05:12 ./usr/share/prokka/db/cm/Viruses drwxr-xr-x root/root 0 2020-02-20 05:12 ./usr/share/prokka/db/cm/__build/ -rw-r--r-- root/root 16 2020-02-20 05:12 ./usr/share/prokka/db/cm/__build/.gitignore -rw-r--r-- root/root 8135 2020-02-20 05:12 ./usr/share/prokka/db/cm/__build/Rfam_archaea_14.1.txt -rw-r--r-- root/root 48210 2020-02-20 05:12 ./usr/share/prokka/db/cm/__build/Rfam_bacteria_14.1.txt -rw-r--r-- root/root 13321 2020-02-20 05:12 ./usr/share/prokka/db/cm/__build/Rfam_viruses_14.1.txt -rw-r--r-- root/root 733 2020-02-20 05:12 ./usr/share/prokka/db/cm/__build/archaea.sql -rw-r--r-- root/root 734 2020-02-20 05:12 ./usr/share/prokka/db/cm/__build/bacteria.sql -rw-r--r-- root/root 652 2020-02-20 05:12 ./usr/share/prokka/db/cm/__build/update.sh -rw-r--r-- root/root 733 2020-02-20 05:12 ./usr/share/prokka/db/cm/__build/viruses.sql drwxr-xr-x root/root 0 2020-02-20 05:12 ./usr/share/prokka/db/genus/ -rw-r--r-- root/root 1222242 2020-02-20 05:12 ./usr/share/prokka/db/genus/Enterococcus -rw-r--r-- root/root 1609296 2020-02-20 05:12 ./usr/share/prokka/db/genus/Escherichia -rw-r--r-- root/root 1525474 2020-02-20 05:12 ./usr/share/prokka/db/genus/Staphylococcus drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/prokka/db/kingdom/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/prokka/db/kingdom/Archaea/ -rw-r--r-- root/root 1003642 2023-09-16 16:45 ./usr/share/prokka/db/kingdom/Archaea/sprot drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/prokka/db/kingdom/Bacteria/ -rw-r--r-- root/root 10547033 2023-09-16 16:45 ./usr/share/prokka/db/kingdom/Bacteria/sprot drwxr-xr-x root/root 0 2023-09-16 16:45 ./usr/share/prokka/db/kingdom/Viruses/ -rw-r--r-- root/root 2703528 2023-09-16 16:45 ./usr/share/prokka/db/kingdom/Viruses/sprot drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/lib/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/lib/prokka/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/ lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/Archaea -> /usr/share/prokka/db/cm/Archaea lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/Bacteria -> /usr/share/prokka/db/cm/Bacteria lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/README -> /usr/share/prokka/db/cm/README lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/Viruses -> /usr/share/prokka/db/cm/Viruses drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/__build/ lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/__build/.gitignore -> /usr/share/prokka/db/cm/__build/.gitignore lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/__build/Rfam_archaea_14.1.txt -> /usr/share/prokka/db/cm/__build/Rfam_archaea_14.1.txt lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/__build/Rfam_bacteria_14.1.txt -> /usr/share/prokka/db/cm/__build/Rfam_bacteria_14.1.txt lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/__build/Rfam_viruses_14.1.txt -> /usr/share/prokka/db/cm/__build/Rfam_viruses_14.1.txt lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/__build/archaea.sql -> /usr/share/prokka/db/cm/__build/archaea.sql lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/__build/bacteria.sql -> /usr/share/prokka/db/cm/__build/bacteria.sql lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/__build/update.sh -> /usr/share/prokka/db/cm/__build/update.sh lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/cm/__build/viruses.sql -> /usr/share/prokka/db/cm/__build/viruses.sql drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/genus/ lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/genus/Enterococcus -> /usr/share/prokka/db/genus/Enterococcus lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/genus/Escherichia -> /usr/share/prokka/db/genus/Escherichia lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/genus/Staphylococcus -> /usr/share/prokka/db/genus/Staphylococcus drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/kingdom/ drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/kingdom/Archaea/ lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/kingdom/Archaea/sprot -> /usr/share/prokka/db/kingdom/Archaea/sprot drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/kingdom/Bacteria/ lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/kingdom/Bacteria/sprot -> /usr/share/prokka/db/kingdom/Bacteria/sprot drwxr-xr-x root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/kingdom/Viruses/ lrwxrwxrwx root/root 0 2023-09-16 16:45 ./var/lib/prokka/db/kingdom/Viruses/sprot -> /usr/share/prokka/db/kingdom/Viruses/sprot +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 248084 Build-Time: 30 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/prokka_1.14.6+dfsg-6.dsc Machine Architecture: amd64 Package: prokka Package-Time: 42 Source-Version: 1.14.6+dfsg-6 Space: 248084 Status: successful Version: 1.14.6+dfsg-6 -------------------------------------------------------------------------------- Finished at 2024-06-05T02:06:31Z Build needed 00:00:42, 248084k disk space