sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | profisis 1.0.11-7 (amd64) Mon, 16 Sep 2024 14:16:47 +0000 | +==============================================================================+ Package: profisis Version: 1.0.11-7 Source Version: 1.0.11-7 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-318696e1-5f2e-4690-afac-292f35197b3f' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup profisis_1.0.11-7 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup profisis_1.0.11-7 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/profisis-BX3a76/resolver-7Hy3K5' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/profisis_1.0.11-7.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/profisis-BX3a76/profisis-1.0.11' with '<>' I: NOTICE: Log filtering will replace 'build/profisis-BX3a76' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [628 B] Get:5 copy:/<>/apt_archive ./ Packages [660 B] Fetched 1897 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB of archives. After this operation, 75.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [884 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 0s (110 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22986 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../31-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-5 gcc-13_13.3.0-6 gcc-14_14.2.0-5 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-5 cpp-14-x86-64-linux-gnu_14.2.0-5 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-5 g++-14-x86-64-linux-gnu_14.2.0-5 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-5 gcc-14-base_14.2.0-5 gcc-14-x86-64-linux-gnu_14.2.0-5 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8+b1 gpg_2.2.43-8+b1 gpg-agent_2.2.43-8+b1 gpg-wks-client_2.2.43-8+b1 gpgconf_2.2.43-8+b1 gpgsm_2.2.43-8+b1 gpgv_2.2.43-8+b1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-5 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-5 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-4 libblkid1_2.40.2-8 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-6 libc-bin_2.40-2 libc-dev-bin_2.40-2 libc-l10n_2.40-2 libc6_2.40-2 libc6-dev_2.40-2 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-5 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-4 libctf0_2.43.1-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-6 libgcc-14-dev_14.2.0-5 libgcc-s1_14.2.0-5 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-5 libgpg-error0_1.50-3 libgprofng0_2.43.1-4 libhogweed6t64_3.10-1 libhwasan0_14.2.0-5 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-5 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-3+b1 liblsan0_14.2.0-5 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-5 libpipeline1_1.5.8-1 libquadmath0_14.2.0-5 libreadline8t64_8.2-5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-4 libsmartcols1_2.40.2-8 libsqlite3-0_3.46.1-1 libssl3t64_3.3.2-1 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-5 libubsan1_14.2.0-5 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunistring5_1.2-1 libuuid1_2.40.2-8 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.9-1 locales-all_2.40-2 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 pinentry-curses_1.2.1-4+b1 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: profisis Binary: profisis Architecture: all Version: 1.0.11-7 Maintainer: Debian Med Packaging Team Uploaders: Cedric Staniewski , Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/owiki/index.php/PROFisis Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/profisis Vcs-Git: https://salsa.debian.org/med-team/profisis.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), debhelper Package-List: profisis deb science optional arch=all Checksums-Sha1: e58e29054bcd664f2540b88092eb3f546952485c 142999 profisis_1.0.11.orig.tar.gz cd414ec7017837517c079698dc90324b49055aee 4364 profisis_1.0.11-7.debian.tar.xz Checksums-Sha256: 9a0910db731713a5817a834b0f5bbdb6b3ae23089addc047d7b4909f506dfeb2 142999 profisis_1.0.11.orig.tar.gz ac3bf70592b9457b891634a88e20291c52e3a61086c6e2760360a67a4fe3a8cd 4364 profisis_1.0.11-7.debian.tar.xz Files: 1890cc0d5f59d13551da83d2d7d23799 142999 profisis_1.0.11.orig.tar.gz cb3d67febe9ea5766aa3eb6a13aadd44 4364 profisis_1.0.11-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHnH7ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHd0g//eEJBsQfGcH0ZyppIutB+eI8E0iharl5G BJMOgI2e0O9o5bFOP5xwTXio6P5Zte5yFlmcounNuDsoKvaBsP2noi7JdtSU7CEW qD/1B7rvDeIsAMYsa5JpdujIqrgXkfOmXFmQ4Acuwt1TB1mf1Vc465v6V+lWS11O F/m9IdZ436R65HLLWXkDXPspgOti5PMgZsBf3ypdq0E4PIVb96LSan7jPtijgx44 5snSEjRxt7aZsJ+rPIN0dS7RT4KyjevCBSQgtIl0F7SNrxOStFHvZIUQTRCCF59h zxuBFsj2ZlI4H8Kh6udIXBUs2+cOqDxv/N0cFZwaMad82ZZu7sK8U4dHGIynYtLI rlU0XV7t1/hVCUcLAQ3/SHO+515nqO3g5DcfHQkw0bIfhGAo6V68QYTODC6dPwWY Jso2gaCzHeo9CndTGNGRKx0egzfOIYZld7v/7Qh4XnKntyrI/822/d9BPiFancxy 5+fn5IAeNRZwZjObnc2d0qwk8oeQvAjC4hFkzgto+1nkmkVzS6wNPGZkbUh8Xmpn sSZGYMV5GXIon9fhwFItBHwtsiJO+sx8r2ZG4xogIXeOxcxzeFu4lD++ErHWcn+S wgh4/L/4HojBrMDYopg3fNdQwEP/oUGvA5u8Qwsskx12I5xvxje4VhocYFicy3of 61VdCbwiXy4= =6h6t -----END PGP SIGNATURE----- gpgv: Signature made Tue Jan 18 20:14:41 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./profisis_1.0.11-7.dsc: no acceptable signature found dpkg-source: info: extracting profisis in /<> dpkg-source: info: unpacking profisis_1.0.11.orig.tar.gz dpkg-source: info: unpacking profisis_1.0.11-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_pp-popcon.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network profisis_1.0.11-7 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network profisis_1.0.11-7 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-318696e1-5f2e-4690-afac-292f35197b3f SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package profisis dpkg-buildpackage: info: source version 1.0.11-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building profisis using existing ./profisis_1.0.11.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building profisis in profisis_1.0.11-7.debian.tar.xz dpkg-source: info: building profisis in profisis_1.0.11-7.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf Makefile.am:11: warning: '%'-style pattern rules are a GNU make extension dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating examples/Makefile dh_auto_build make -j2 make[1]: Entering directory '/<>' Making all in examples make[2]: Entering directory '/<>/examples' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' sed -e 's|__docdir__|/usr/share/doc/profisis|g;s|__datadir__|/usr/share|g;s|__pkgdatadir__|/usr/share/profisis|g;s|__sysconfdir__|/etc|g;s|__bindir__|/usr/bin|g;s|__VERSION__|1.0.11|g' "profisis" | \ pod2man -c 'User Commands' -r "1.0.11" -name PROFISIS > "profisis.1" make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j2 check "TESTSUITEFLAGS=-j2 --verbose" VERBOSE=1 make[1]: Entering directory '/<>' Making check in examples make[2]: Entering directory '/<>/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/profisis/ make -j2 install DESTDIR=/<>/debian/profisis AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/profisis/usr/share/doc/profisis/examples' /usr/bin/install -c -m 644 ./3A1P_A.fasta ./3A1P_A.hssp ./3A1P_A.profisis ./3A1P_A.rdbProf '/<>/debian/profisis/usr/share/doc/profisis/examples' make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' /usr/bin/mkdir -p '/<>/debian/profisis/usr/bin' /usr/bin/mkdir -p '/<>/debian/profisis/usr/share/profisis' /usr/bin/install -c profisis '/<>/debian/profisis/usr/bin' /usr/bin/install -c -m 644 jctAuto9newHssp990-51 profisisrc.default '/<>/debian/profisis/usr/share/profisis' make install-exec-hook /usr/bin/mkdir -p '/<>/debian/profisis/usr/share/man/man1' make[4]: Entering directory '/<>' sed -i -e 's|__docdir__|/usr/share/doc/profisis|g;s|__datadir__|/usr/share|g;s|__pkgdatadir__|/usr/share/profisis|g;s|__sysconfdir__|/etc|g;s|__bindir__|/usr/bin|g;s|__VERSION__|1.0.11|g' "/<>/debian/profisis/usr/bin/profisis" make[4]: Leaving directory '/<>' /usr/bin/install -c -m 644 profisis.1 '/<>/debian/profisis/usr/share/man/man1' make install-data-hook make[4]: Entering directory '/<>' find '/<>/debian/profisis/usr/share/profisis/profisisrc.default' -type f -exec sed -i -e 's|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/profisis|g;s|__pkgdatadir__|/usr/share/profisis|g;s|__sysconfdir__|/etc|g;' '{}' \; make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -Xexamples/3A1P_A.fasta -Xexamples/3A1P_A.hssp -Xexamples/3A1P_A.rdbProf make[1]: Leaving directory '/<>' dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'profisis' in '../profisis_1.0.11-7_all.deb'. dpkg-genbuildinfo -O../profisis_1.0.11-7_amd64.buildinfo dpkg-genchanges -O../profisis_1.0.11-7_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-09-16T14:17:13Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ profisis_1.0.11-7_amd64.changes: -------------------------------- Format: 1.8 Date: Tue, 18 Jan 2022 21:10:48 +0100 Source: profisis Binary: profisis Architecture: source all Version: 1.0.11-7 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: profisis - prediction of protein-protein interaction sites from sequence Changes: profisis (1.0.11-7) unstable; urgency=medium . * Stop using pp_popcon * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) * Add missing build dependency on dh addon. Checksums-Sha1: 3a74014c8c760ab2eee7897ccb7b12a8f5726172 1149 profisis_1.0.11-7.dsc 173e26ca171db9dc8e93881ecde79709300af391 4372 profisis_1.0.11-7.debian.tar.xz 4e4602eda3f7a49ef4c9ef0d5fc179409c46beb2 61620 profisis_1.0.11-7_all.deb 08d65b02ecf3ffdf0c36637f676d587a3569903c 4971 profisis_1.0.11-7_amd64.buildinfo Checksums-Sha256: 5adafd5c19c61deaab76d52804c9105f31750378b07aa9f17d8766f02aee1117 1149 profisis_1.0.11-7.dsc 2bd142f792fbd2ef7bbfa729b8a032e0fc20edbbbd5df0b323a7d14d0c38a8e4 4372 profisis_1.0.11-7.debian.tar.xz 5031cace7f3bfcebfc37a54c46341501546b34bc22275644b8d224c7db1c701a 61620 profisis_1.0.11-7_all.deb 87be634627a0c174ca3445ac506e0c81efc6cbd8c1721fe45258ae80b3a7a4fb 4971 profisis_1.0.11-7_amd64.buildinfo Files: c35d85674983823dc1b539e711e86261 1149 science optional profisis_1.0.11-7.dsc 5dbd69ad34ef3e48f35aa8ccc6be0c58 4372 science optional profisis_1.0.11-7.debian.tar.xz 1b7cef5395fb052057d641f43ae759ee 61620 science optional profisis_1.0.11-7_all.deb 0ad654244b1fb07dc04cde0385acfc9b 4971 science optional profisis_1.0.11-7_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: profisis Binary: profisis Architecture: all source Version: 1.0.11-7 Checksums-Md5: c35d85674983823dc1b539e711e86261 1149 profisis_1.0.11-7.dsc 1b7cef5395fb052057d641f43ae759ee 61620 profisis_1.0.11-7_all.deb Checksums-Sha1: 3a74014c8c760ab2eee7897ccb7b12a8f5726172 1149 profisis_1.0.11-7.dsc 4e4602eda3f7a49ef4c9ef0d5fc179409c46beb2 61620 profisis_1.0.11-7_all.deb Checksums-Sha256: 5adafd5c19c61deaab76d52804c9105f31750378b07aa9f17d8766f02aee1117 1149 profisis_1.0.11-7.dsc 5031cace7f3bfcebfc37a54c46341501546b34bc22275644b8d224c7db1c701a 61620 profisis_1.0.11-7_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 16 Sep 2024 14:17:13 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-4), binutils-common (= 2.43.1-4), binutils-x86-64-linux-gnu (= 2.43.1-4), bsdextrautils (= 2.40.2-8), bsdutils (= 1:2.40.2-8), build-essential (= 12.10), bzip2 (= 1.0.8-6), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-6), cpp-13-x86-64-linux-gnu (= 13.3.0-6), cpp-14 (= 14.2.0-5), cpp-14-x86-64-linux-gnu (= 14.2.0-5), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-5), g++-14-x86-64-linux-gnu (= 14.2.0-5), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-6), gcc-13-base (= 13.3.0-6), gcc-13-x86-64-linux-gnu (= 13.3.0-6), gcc-14 (= 14.2.0-5), gcc-14-base (= 14.2.0-5), gcc-14-x86-64-linux-gnu (= 14.2.0-5), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-5), libatomic1 (= 14.2.0-5), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-4), libblkid1 (= 2.40.2-8), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-2), libc-dev-bin (= 2.40-2), libc6 (= 2.40-2), libc6-dev (= 2.40-2), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-5), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-4), libctf0 (= 2.43.1-4), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-6), libgcc-14-dev (= 14.2.0-5), libgcc-s1 (= 14.2.0-5), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-5), libgprofng0 (= 2.43.1-4), libhwasan0 (= 14.2.0-5), libicu72 (= 72.1-5), libisl23 (= 0.27-1), libitm1 (= 14.2.0-5), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-5), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-5), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-5), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-4), libsmartcols1 (= 2.40.2-8), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-5), libstdc++6 (= 14.2.0-5), libsystemd0 (= 256.6-1), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-5), libubsan1 (= 14.2.0-5), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.6-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-8), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.9-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-5), perl-base (= 5.40.0-5), perl-modules-5.40 (= 5.40.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-8), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1642536648" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ profisis_1.0.11-7_all.deb ------------------------- new Debian package, version 2.0. size 61620 bytes: control archive=1072 bytes. 625 bytes, 16 lines control 943 bytes, 13 lines md5sums Package: profisis Version: 1.0.11-7 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 254 Depends: perl:any, libconfig-inifiles-perl, profnet-isis Recommends: librg-utils-perl Section: science Priority: optional Homepage: https://rostlab.org/owiki/index.php/PROFisis Description: prediction of protein-protein interaction sites from sequence Profisis (ISIS) identifies interacting protein residues in protein-protein interfaces from sequence alone. . The strongest predictions of the method reached over 90% accuracy in a cross-validation experiment. drwxr-xr-x root/root 0 2022-01-18 20:10 ./ drwxr-xr-x root/root 0 2022-01-18 20:10 ./usr/ drwxr-xr-x root/root 0 2022-01-18 20:10 ./usr/bin/ -rwxr-xr-x root/root 20666 2022-01-18 20:10 ./usr/bin/profisis drwxr-xr-x root/root 0 2022-01-18 20:10 ./usr/share/ drwxr-xr-x root/root 0 2022-01-18 20:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-18 20:10 ./usr/share/doc/profisis/ -rw-r--r-- root/root 731 2022-01-18 20:10 ./usr/share/doc/profisis/README.test -rw-r--r-- root/root 611 2022-01-18 20:10 ./usr/share/doc/profisis/changelog.Debian.gz -rw-r--r-- root/root 704 2012-08-14 08:25 ./usr/share/doc/profisis/changelog.gz -rw-r--r-- root/root 2214 2022-01-18 20:10 ./usr/share/doc/profisis/copyright drwxr-xr-x root/root 0 2022-01-18 20:10 ./usr/share/doc/profisis/examples/ -rw-r--r-- root/root 194 2022-01-18 20:10 ./usr/share/doc/profisis/examples/3A1P_A.fasta -rw-r--r-- root/root 95552 2022-01-18 20:10 ./usr/share/doc/profisis/examples/3A1P_A.hssp -rw-r--r-- root/root 1823 2022-01-18 20:10 ./usr/share/doc/profisis/examples/3A1P_A.profisis -rw-r--r-- root/root 16836 2022-01-18 20:10 ./usr/share/doc/profisis/examples/3A1P_A.rdbProf -rw-r--r-- root/root 751 2022-01-18 20:10 ./usr/share/doc/profisis/installation-test drwxr-xr-x root/root 0 2022-01-18 20:10 ./usr/share/man/ drwxr-xr-x root/root 0 2022-01-18 20:10 ./usr/share/man/man1/ -rw-r--r-- root/root 2766 2022-01-18 20:10 ./usr/share/man/man1/profisis.1.gz drwxr-xr-x root/root 0 2022-01-18 20:10 ./usr/share/profisis/ -rw-r--r-- root/root 98450 2022-01-18 20:10 ./usr/share/profisis/jctAuto9newHssp990-51 -rw-r--r-- root/root 42 2022-01-18 20:10 ./usr/share/profisis/profisisrc.default +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 1744 Build-Time: 8 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 8 Job: /srv/debomatic/incoming/profisis_1.0.11-7.dsc Machine Architecture: amd64 Package: profisis Package-Time: 26 Source-Version: 1.0.11-7 Space: 1744 Status: successful Version: 1.0.11-7 -------------------------------------------------------------------------------- Finished at 2024-09-16T14:17:13Z Build needed 00:00:26, 1744k disk space