sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | profbval 1.0.22-8 (amd64) Mon, 16 Sep 2024 14:16:16 +0000 | +==============================================================================+ Package: profbval Version: 1.0.22-8 Source Version: 1.0.22-8 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-db42edaf-1ffa-4c7e-badc-880bab52d39f' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup profbval_1.0.22-8 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup profbval_1.0.22-8 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/profbval-KaSAUa/resolver-KWrdyd' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/profbval_1.0.22-8.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/profbval-KaSAUa/profbval-1.0.22' with '<>' I: NOTICE: Log filtering will replace 'build/profbval-KaSAUa' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), perl, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), perl, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [634 B] Get:5 copy:/<>/apt_archive ./ Packages [666 B] Fetched 1909 B in 0s (109 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB of archives. After this operation, 75.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [888 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 0s (135 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22986 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../31-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-5 gcc-13_13.3.0-6 gcc-14_14.2.0-5 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-5 cpp-14-x86-64-linux-gnu_14.2.0-5 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-5 g++-14-x86-64-linux-gnu_14.2.0-5 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-5 gcc-14-base_14.2.0-5 gcc-14-x86-64-linux-gnu_14.2.0-5 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8+b1 gpg_2.2.43-8+b1 gpg-agent_2.2.43-8+b1 gpg-wks-client_2.2.43-8+b1 gpgconf_2.2.43-8+b1 gpgsm_2.2.43-8+b1 gpgv_2.2.43-8+b1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-5 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-5 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-4 libblkid1_2.40.2-8 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-6 libc-bin_2.40-2 libc-dev-bin_2.40-2 libc-l10n_2.40-2 libc6_2.40-2 libc6-dev_2.40-2 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-5 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-4 libctf0_2.43.1-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-6 libgcc-14-dev_14.2.0-5 libgcc-s1_14.2.0-5 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-5 libgpg-error0_1.50-3 libgprofng0_2.43.1-4 libhogweed6t64_3.10-1 libhwasan0_14.2.0-5 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-5 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-3+b1 liblsan0_14.2.0-5 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-5 libpipeline1_1.5.8-1 libquadmath0_14.2.0-5 libreadline8t64_8.2-5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-4 libsmartcols1_2.40.2-8 libsqlite3-0_3.46.1-1 libssl3t64_3.3.2-1 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-5 libubsan1_14.2.0-5 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunistring5_1.2-1 libuuid1_2.40.2-8 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.9-1 locales-all_2.40-2 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 pinentry-curses_1.2.1-4+b1 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: profbval Binary: profbval Architecture: all Version: 1.0.22-8 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Christof Angermüller , Andreas Tille Homepage: https://www.rostlab.org/owiki/index.php/PROFbval Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/profbval Vcs-Git: https://salsa.debian.org/med-team/profbval.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), perl, debhelper Package-List: profbval deb science optional arch=all Checksums-Sha1: 0502a24c5979ae3f770b6f97805edd56e331f324 145656 profbval_1.0.22.orig.tar.gz 811b695d87746e6f1f9eddc4f657d28a06411f7e 5992 profbval_1.0.22-8.debian.tar.xz Checksums-Sha256: 4651a721ec20735daf9e87c727f742b301b38572f6e2146cb70f55bfdc088d8e 145656 profbval_1.0.22.orig.tar.gz afcc496162b961b2ccbcfcfe1174de2000e1a0e2f23d03e7d7ea2d1824ec63c8 5992 profbval_1.0.22-8.debian.tar.xz Files: d2917b6c5cce0d73ce288b8a52229745 145656 profbval_1.0.22.orig.tar.gz 7c287a80c827ea2228b02e1a8fb3027f 5992 profbval_1.0.22-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHnImoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGMRA/9Gw37vx5137VYKyKtlW16g+WaFDmdyeqL 0YCF1qLuJMGu0AgJNoFPtj3OTvPmjVyuPieAFOC/ZyoEuJcfxkvm+owID9leSoFJ ikS+VpeF9ViMvtA/7Ehr3an9ydazcJDnuDpD94fbQoddUH3pNWFbNfEiVSwHF7+6 WJzrt3ByXomNudiXvhz6WrC3EUHfOnn2o8Y4YfdqCMiyiZmz3VlbnefUob5HeT5x IgPvygVW9DAXK5s1WAIETypan7KkDF/MGax8Sxjve8xD3t+UYckurOWLdzy1nHxl zYEZ3wfiKw53Lq9zj2Ds8HQr9ld9mkT9HIRRnDn7OZw3QwSYxxgYWJc/UPenbYTu FeIPHxGNx6d8wA7JJpwsqo+CWtteBv8sRGO4q7EA4226PIkzh0GOx7h9MnKMzjrt 0WxlNVbtmfj+Li2/Lo+mErEgsW79j7eAQqCy6tYQqniusUgez7wVvOzuD6iHbRsD MJBcJpakNpq1ssx0UKQtZOCfah1I3/Ef7R/Tmm5U8yO2JB/ib2rxGdMjw0ZReL0u q0Qazr3arguA0JWCeyKGcZR/Yk/xk3SVp242LKBDzjFKFr5DIW7oJ8/Obl6H45mZ h8P86bwm2yjJm4nnJFLMFjVd4UR9/iljfCURnMNne+ImLdYEou00A7OHJi3d3UGA U9S7NB5kxfg= =Zamh -----END PGP SIGNATURE----- gpgv: Signature made Tue Jan 18 20:26:18 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./profbval_1.0.22-8.dsc: no acceptable signature found dpkg-source: info: extracting profbval in /<> dpkg-source: info: unpacking profbval_1.0.22.orig.tar.gz dpkg-source: info: unpacking profbval_1.0.22-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_pp-popcon.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network profbval_1.0.22-8 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network profbval_1.0.22-8 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-db42edaf-1ffa-4c7e-badc-880bab52d39f SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package profbval dpkg-buildpackage: info: source version 1.0.22-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building profbval using existing ./profbval_1.0.22.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building profbval in profbval_1.0.22-8.debian.tar.xz dpkg-source: info: building profbval in profbval_1.0.22-8.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf Makefile.am:14: warning: '%'-style pattern rules are a GNU make extension dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating scr/Makefile config.status: creating nn_files/Makefile config.status: creating examples/Makefile dh_auto_build make -j2 make[1]: Entering directory '/<>' Making all in examples make[2]: Entering directory '/<>/examples' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/examples' Making all in nn_files make[2]: Entering directory '/<>/nn_files' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/nn_files' Making all in scr make[2]: Entering directory '/<>/scr' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/scr' make[2]: Entering directory '/<>' sed -e 's|__docdir__|/usr/share/doc/profbval|g;s|__datadir__|/usr/share|g;s|__pkgdatadir__|/usr/share/profbval|g;s|__sysconfdir__|/etc|g;s|__bindir__|/usr/bin|g;s|__VERSION__|1.0.22|g' "profbval" | \ pod2man -c 'User Commands' -r "1.0.22" -name PROFBVAL > "profbval.1" make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j2 check "TESTSUITEFLAGS=-j2 --verbose" VERBOSE=1 make[1]: Entering directory '/<>' Making check in examples make[2]: Entering directory '/<>/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/examples' Making check in nn_files make[2]: Entering directory '/<>/nn_files' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/nn_files' Making check in scr make[2]: Entering directory '/<>/scr' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/scr' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/profbval/ make -j2 install DESTDIR=/<>/debian/profbval AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/profbval/usr/share/doc/profbval/examples' /usr/bin/install -c -m 644 ./cad23-fil.hssp ./cad23-fil.rdbProf ./cad23.f ./cad23.profbval '/<>/debian/profbval/usr/share/doc/profbval/examples' make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' Making install in nn_files make[2]: Entering directory '/<>/nn_files' make[3]: Entering directory '/<>/nn_files' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/profbval/usr/share/profbval/nn_files' /usr/bin/install -c -m 644 ./jct.in '/<>/debian/profbval/usr/share/profbval/nn_files' make[3]: Leaving directory '/<>/nn_files' make[2]: Leaving directory '/<>/nn_files' Making install in scr make[2]: Entering directory '/<>/scr' make[3]: Entering directory '/<>/scr' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/profbval/usr/share/profbval/scr' /usr/bin/install -c ./PROFbval.pl ./createDataFile.pl '/<>/debian/profbval/usr/share/profbval/scr' make[3]: Leaving directory '/<>/scr' make[2]: Leaving directory '/<>/scr' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' /usr/bin/mkdir -p '/<>/debian/profbval/usr/bin' /usr/bin/mkdir -p '/<>/debian/profbval/usr/share/doc/profbval' /usr/bin/install -c -m 644 README '/<>/debian/profbval/usr/share/doc/profbval' /usr/bin/install -c profbval '/<>/debian/profbval/usr/bin' /usr/bin/mkdir -p '/<>/debian/profbval/usr/share/man/man1' /usr/bin/install -c -m 644 profbval.1 '/<>/debian/profbval/usr/share/man/man1' make install-exec-hook make install-data-hook make[4]: Entering directory '/<>' make[4]: Entering directory '/<>' find '/<>/debian/profbval/usr/share/profbval/scr' -type f -exec sed -i -e 's|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/profbval|g;s|__pkgdatadir__|/usr/share/profbval|g;s|__sysconfdir__|/etc|g;' '{}' \; sed -i -e 's|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/profbval|g;s|__pkgdatadir__|/usr/share/profbval|g;s|__sysconfdir__|/etc|g;' "/<>/debian/profbval/usr/bin/profbval" make[4]: Leaving directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -Xexamples/cad23.f -Xexamples/cad23-fil.rdbProf -Xexamples/cad23-fil.hssp make[1]: Leaving directory '/<>' dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'profbval' in '../profbval_1.0.22-8_all.deb'. dpkg-genbuildinfo -O../profbval_1.0.22-8_amd64.buildinfo dpkg-genchanges -O../profbval_1.0.22-8_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-09-16T14:16:41Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ profbval_1.0.22-8_amd64.changes: -------------------------------- Format: 1.8 Date: Tue, 18 Jan 2022 21:22:48 +0100 Source: profbval Binary: profbval Architecture: source all Version: 1.0.22-8 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: profbval - predictor of flexible/rigid protein residues from sequence Changes: profbval (1.0.22-8) unstable; urgency=medium . * Stop using pp_popcon * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) * Add missing build dependency on dh addon. Checksums-Sha1: be6acbb02c7d7e2a0f74c9924443a35f070a1a5e 1168 profbval_1.0.22-8.dsc 8438b74bde66b9e67b5d29447b76788e98c02b54 6000 profbval_1.0.22-8.debian.tar.xz 53374c587319c502db1cd361fbd7d1cf132f459b 58040 profbval_1.0.22-8_all.deb 6f936b319640113ba557bdc53c4e7843effed5ab 4971 profbval_1.0.22-8_amd64.buildinfo Checksums-Sha256: 7f2e149a0f53695cbfd89804d5526f7ece8a9f9339e3f287da5f91270b5db7f2 1168 profbval_1.0.22-8.dsc ac9d48703f1af4429b6a67745db9f0daf46f93c49580592098c4873ed7858c30 6000 profbval_1.0.22-8.debian.tar.xz b83cbdaf38588030f27f67e5983ac59af798b4c55ce56ecb052c4d7fbd023621 58040 profbval_1.0.22-8_all.deb 0ffcdd9838cb6d58cdf06d335d80275a1c5c8b859788f8b1c923e8747cc31cec 4971 profbval_1.0.22-8_amd64.buildinfo Files: a751a3ed994db0d2a1412f9305c2f8e2 1168 science optional profbval_1.0.22-8.dsc b324c0c144f53609adbd2b975fa57b64 6000 science optional profbval_1.0.22-8.debian.tar.xz 602c40e9dfc2ea1eea124c5b28625cfe 58040 science optional profbval_1.0.22-8_all.deb c5aba3f6a184067f3a2423e858af9a2e 4971 science optional profbval_1.0.22-8_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: profbval Binary: profbval Architecture: all source Version: 1.0.22-8 Checksums-Md5: a751a3ed994db0d2a1412f9305c2f8e2 1168 profbval_1.0.22-8.dsc 602c40e9dfc2ea1eea124c5b28625cfe 58040 profbval_1.0.22-8_all.deb Checksums-Sha1: be6acbb02c7d7e2a0f74c9924443a35f070a1a5e 1168 profbval_1.0.22-8.dsc 53374c587319c502db1cd361fbd7d1cf132f459b 58040 profbval_1.0.22-8_all.deb Checksums-Sha256: 7f2e149a0f53695cbfd89804d5526f7ece8a9f9339e3f287da5f91270b5db7f2 1168 profbval_1.0.22-8.dsc b83cbdaf38588030f27f67e5983ac59af798b4c55ce56ecb052c4d7fbd023621 58040 profbval_1.0.22-8_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 16 Sep 2024 14:16:40 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-4), binutils-common (= 2.43.1-4), binutils-x86-64-linux-gnu (= 2.43.1-4), bsdextrautils (= 2.40.2-8), bsdutils (= 1:2.40.2-8), build-essential (= 12.10), bzip2 (= 1.0.8-6), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-6), cpp-13-x86-64-linux-gnu (= 13.3.0-6), cpp-14 (= 14.2.0-5), cpp-14-x86-64-linux-gnu (= 14.2.0-5), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-5), g++-14-x86-64-linux-gnu (= 14.2.0-5), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-6), gcc-13-base (= 13.3.0-6), gcc-13-x86-64-linux-gnu (= 13.3.0-6), gcc-14 (= 14.2.0-5), gcc-14-base (= 14.2.0-5), gcc-14-x86-64-linux-gnu (= 14.2.0-5), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-5), libatomic1 (= 14.2.0-5), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-4), libblkid1 (= 2.40.2-8), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-2), libc-dev-bin (= 2.40-2), libc6 (= 2.40-2), libc6-dev (= 2.40-2), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-5), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-4), libctf0 (= 2.43.1-4), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-6), libgcc-14-dev (= 14.2.0-5), libgcc-s1 (= 14.2.0-5), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-5), libgprofng0 (= 2.43.1-4), libhwasan0 (= 14.2.0-5), libicu72 (= 72.1-5), libisl23 (= 0.27-1), libitm1 (= 14.2.0-5), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-5), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-5), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-5), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-4), libsmartcols1 (= 2.40.2-8), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-5), libstdc++6 (= 14.2.0-5), libsystemd0 (= 256.6-1), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-5), libubsan1 (= 14.2.0-5), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.6-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-8), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.9-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-5), perl-base (= 5.40.0-5), perl-modules-5.40 (= 5.40.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-8), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1642537368" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ profbval_1.0.22-8_all.deb ------------------------- new Debian package, version 2.0. size 58040 bytes: control archive=1476 bytes. 1395 bytes, 29 lines control 1073 bytes, 15 lines md5sums Package: profbval Version: 1.0.22-8 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 262 Depends: perl:any, profnet-bval Recommends: blast2, librg-utils-perl, profphd Section: science Priority: optional Homepage: https://www.rostlab.org/owiki/index.php/PROFbval Description: predictor of flexible/rigid protein residues from sequence PROFbval can be useful for both protein structure and function predictions. For instance, a biologist can locate potentially antigenic determinants by identifying the most flexible residues on the protein surface. Additionally, a crystallographer can locate residues that potentially have high experimental B-values. . PROFbval takes the following input, further described on profbval(1): * a protein sequence in a FASTA file * secondary structure and solvent accessibility prediction by prof(1) * an HSSP file . Background: the mobility of a given residue on the protein surface is related to its functional role. Therefore, identification of extremely rigid or flexible residues on the protein surface is helpful for identifying functionally important residues in proteins. A common measure of atom mobility in proteins is B-value data from x-ray crystallography structures. PROFbval is the first tool to predict normalized backbone B-values from amino-acid sequence. drwxr-xr-x root/root 0 2022-01-18 20:22 ./ drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/ drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/bin/ -rwxr-xr-x root/root 6916 2022-01-18 20:22 ./usr/bin/profbval drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/share/ drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/share/doc/profbval/ -rw-r--r-- root/root 19 2022-01-18 20:22 ./usr/share/doc/profbval/README -rw-r--r-- root/root 2158 2022-01-18 20:22 ./usr/share/doc/profbval/README.test -rw-r--r-- root/root 678 2022-01-18 20:22 ./usr/share/doc/profbval/changelog.Debian.gz -rw-r--r-- root/root 1122 2012-08-14 11:28 ./usr/share/doc/profbval/changelog.gz -rw-r--r-- root/root 2394 2022-01-18 20:22 ./usr/share/doc/profbval/copyright drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/share/doc/profbval/examples/ -rw-r--r-- root/root 84024 2022-01-18 20:22 ./usr/share/doc/profbval/examples/cad23-fil.hssp -rw-r--r-- root/root 37299 2022-01-18 20:22 ./usr/share/doc/profbval/examples/cad23-fil.rdbProf -rw-r--r-- root/root 354 2022-01-18 20:22 ./usr/share/doc/profbval/examples/cad23.f -rw-r--r-- root/root 6402 2022-01-18 20:22 ./usr/share/doc/profbval/examples/cad23.profbval -rw-r--r-- root/root 849 2022-01-18 20:22 ./usr/share/doc/profbval/installation-test drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/share/man/ drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/share/man/man1/ -rw-r--r-- root/root 3114 2022-01-18 20:22 ./usr/share/man/man1/profbval.1.gz drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/share/profbval/ drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/share/profbval/nn_files/ -rw-r--r-- root/root 76420 2022-01-18 20:22 ./usr/share/profbval/nn_files/jct.in drwxr-xr-x root/root 0 2022-01-18 20:22 ./usr/share/profbval/scr/ -rwxr-xr-x root/root 15826 2022-01-18 20:22 ./usr/share/profbval/scr/PROFbval.pl -rwxr-xr-x root/root 8000 2022-01-18 20:22 ./usr/share/profbval/scr/createDataFile.pl +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 1816 Build-Time: 9 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 7 Job: /srv/debomatic/incoming/profbval_1.0.22-8.dsc Machine Architecture: amd64 Package: profbval Package-Time: 25 Source-Version: 1.0.22-8 Space: 1816 Status: successful Version: 1.0.22-8 -------------------------------------------------------------------------------- Finished at 2024-09-16T14:16:41Z Build needed 00:00:25, 1816k disk space