sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | norsnet 1.0.17-7 (amd64) Sun, 04 Aug 2024 20:43:30 +0000 | +==============================================================================+ Package: norsnet Version: 1.0.17-7 Source Version: 1.0.17-7 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-b67616f5-b01f-4ce8-bb44-998dbd5d2a09' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup norsnet_1.0.17-7 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup norsnet_1.0.17-7 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/norsnet-Pbh8GQ/resolver-Q17LJZ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/norsnet_1.0.17-7.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/norsnet-Pbh8GQ/norsnet-1.0.17' with '<>' I: NOTICE: Log filtering will replace 'build/norsnet-Pbh8GQ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [628 B] Get:5 copy:/<>/apt_archive ./ Packages [660 B] Fetched 1897 B in 0s (148 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After this operation, 75.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [884 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-1 [96.1 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.7 MB in 0s (95.1 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22966 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../31-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.16) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.4 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-1 bsdutils_1:2.40.2-1 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-4 g++-13-x86-64-linux-gnu_13.3.0-4 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-4 gcc-13-base_13.3.0-4 gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libblkid1_2.40.2-1 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.2.0-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-4 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.42.90.20240720-2 libhogweed6t64_3.10-1 libhwasan0_14.2.0-1 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2+b1 liblsan0_14.2.0-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-1 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-1 libpipeline1_1.5.7-2 libquadmath0_14.2.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b3 libsemanage-common_3.5-1 libsemanage2_3.5-1+b4 libsepol2_3.5-2+b1 libsframe1_2.42.90.20240720-2 libsmartcols1_2.40.2-1 libsqlite3-0_3.46.0-1 libssl3t64_3.3.1-2 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 libsystemd0_256.4-2 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-1 libubsan1_14.2.0-1 libuchardet0_0.0.8-1+b1 libudev1_256.4-2 libunistring5_1.2-1 libuuid1_2.40.2-1 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.9.12-1 locales-all_2.39-6 login_1:4.15.3-3 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.15.3-3 patch_2.7.6-7 perl_5.40.0-1 perl-base_5.40.0-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-1 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-1 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: norsnet Binary: norsnet Architecture: all Version: 1.0.17-7 Maintainer: Debian Med Packaging Team Uploaders: Christian Mertes , Laszlo Kajan , Andreas Tille Homepage: https://www.rostlab.org/owiki/index.php/Norsnet Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/norsnet Vcs-Git: https://salsa.debian.org/med-team/norsnet.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), debhelper Package-List: norsnet deb science optional arch=all Checksums-Sha1: bb57e43760377e1f807847175e8a80c6c1ecb330 125965 norsnet_1.0.17.orig.tar.gz 639adf41d5c260762a2a8fa0b2877ade11ff347d 4600 norsnet_1.0.17-7.debian.tar.xz Checksums-Sha256: 3a5121c0accbfff1c44df82ee2a0621f62718d9a1b9bcfbd3d2e00d95da953d8 125965 norsnet_1.0.17.orig.tar.gz db14c87c72116ddd8272949710334aa0f91d96a4b8bca61534187ea69ad28306 4600 norsnet_1.0.17-7.debian.tar.xz Files: 21428f5105a4c91d5cb4746f693ae486 125965 norsnet_1.0.17.orig.tar.gz bfb6899bbfd70d88cb84a634bca98cad 4600 norsnet_1.0.17-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHnF6URHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGkrg//QRi9uAdyFJ2URkSgSO+AgHwWaPnV9JLN MnwbCSOvqajk7qb5F2s3lsYPrTnK1+8h5yzQRwSZcAroumB1NddMY2HShkwQleWG 754JdfUJGR8GjQV+NgwN0ofCwNI6fltSWujyGzvwldyYcyddeR8I/Ls2CVWkCNRv BUgB4LlYRXwHbqVINBbmtpp8QhBlrcuuf8qEDt+dPINEJaw5GgUdSzl8hx9I3ktF ANNqfHe1WH4SITbfx68cCKuK4raQH1BadOVx2vn2WE81G8g3m3A1+l5euJyvJsT3 KhMwjK4Eke23SO1P5ro8hiwYPHmTiVTtuN3Puxvy0ru2jEK8cQfjG3KcSyf8aL39 YeBGU/ANJXNmUZJuqb3yXnUnTQ+HnGmknWnn2gv2h6bDcRhC4pl70Z/JaEjtRO8p SphFBIXU3VcZzYdLMUIy/+3JpseCNlwpQvXR0pmJQumWzcgmFFC5rMA/OpRaC2k2 QzbiMEc4rKliro5mBqmdoZM2sSJtnlbUSPrheJ3UzRZ0Eoe7IzGvg8qSsaF4A38M lDPtUJvH/MVxvBa1GjRygMrStVdVZvDFWzP1Yze4cLIXfiyU7ZVJZ8kY+mPdbkZJ WsKb0GYILcsm7teolilchMJLpfcUM7pikZLSnELQSboZowma1kBddkyuCE7mLTAa Pc0qwOFP9Cc= =w1ar -----END PGP SIGNATURE----- gpgv: Signature made Tue Jan 18 19:40:21 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./norsnet_1.0.17-7.dsc: no acceptable signature found dpkg-source: info: extracting norsnet in /<> dpkg-source: info: unpacking norsnet_1.0.17.orig.tar.gz dpkg-source: info: unpacking norsnet_1.0.17-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_pp-popcon.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network norsnet_1.0.17-7 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network norsnet_1.0.17-7 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-b67616f5-b01f-4ce8-bb44-998dbd5d2a09 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package norsnet dpkg-buildpackage: info: source version 1.0.17-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building norsnet using existing ./norsnet_1.0.17.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building norsnet in norsnet_1.0.17-7.debian.tar.xz dpkg-source: info: building norsnet in norsnet_1.0.17-7.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating scr/Makefile config.status: creating examples/Makefile dh_auto_build make -j2 make[1]: Entering directory '/<>' Making all in scr make[2]: Entering directory '/<>/scr' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/scr' Making all in examples make[2]: Entering directory '/<>/examples' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' sed -e 's|__docdir__|/usr/share/doc/norsnet|g;s|__datadir__|/usr/share|g;s|__pkgdatadir__|/usr/share/norsnet|g;s|__sysconfdir__|/etc|g;s|__bindir__|/usr/bin|g;' "norsnet.pod.in" > "norsnet.pod" pod2man -c 'User Commands' -r "1.0.17" norsnet.pod norsnet.1 make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j2 check "TESTSUITEFLAGS=-j2 --verbose" VERBOSE=1 make[1]: Entering directory '/<>' Making check in scr make[2]: Entering directory '/<>/scr' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/scr' Making check in examples make[2]: Entering directory '/<>/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/norsnet/ make -j2 install DESTDIR=/<>/debian/norsnet AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in scr make[2]: Entering directory '/<>/scr' make[3]: Entering directory '/<>/scr' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/norsnet/usr/share/norsnet/scr' /usr/bin/install -c -m 644 ./createDataFile.pl ./jct50-short ./NORSnet.pl '/<>/debian/norsnet/usr/share/norsnet/scr' make install-data-hook make[4]: Entering directory '/<>/scr' chmod +x /<>/debian/norsnet/usr/share/norsnet/scr/createDataFile.pl /<>/debian/norsnet/usr/share/norsnet/scr/NORSnet.pl make[4]: Leaving directory '/<>/scr' make[3]: Leaving directory '/<>/scr' make[2]: Leaving directory '/<>/scr' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/norsnet/usr/share/doc/norsnet/examples' /usr/bin/install -c -m 644 ./cad23-fil.hssp ./cad23-fil.rdbProf ./cad23.f ./cad23.norsnet ./cad23.profbval '/<>/debian/norsnet/usr/share/doc/norsnet/examples' make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' /usr/bin/mkdir -p '/<>/debian/norsnet/usr/bin' /usr/bin/mkdir -p '/<>/debian/norsnet/usr/share/man/man1' /usr/bin/install -c norsnet '/<>/debian/norsnet/usr/bin' make install-exec-hook make[4]: Entering directory '/<>' sed -i -e 's|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/norsnet|g;s|__pkgdatadir__|/usr/share/norsnet|g;s|__sysconfdir__|/etc|g;' "/<>/debian/norsnet/usr/bin/norsnet" /usr/bin/install -c -m 644 norsnet.1 '/<>/debian/norsnet/usr/share/man/man1' make[4]: Leaving directory '/<>' make install-data-hook make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-data-hook'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples -XMakefile make[1]: Leaving directory '/<>' dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -Xexamples/cad23.f -Xexamples/cad23-fil.rdbProf -Xexamples/cad23-fil.hssp -Xexamples/cad23.profbval make[1]: Leaving directory '/<>' dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package norsnet: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package norsnet: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'norsnet' in '../norsnet_1.0.17-7_all.deb'. dpkg-genbuildinfo -O../norsnet_1.0.17-7_amd64.buildinfo dpkg-genchanges -O../norsnet_1.0.17-7_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-04T20:43:56Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ norsnet_1.0.17-7_amd64.changes: ------------------------------- Format: 1.8 Date: Tue, 18 Jan 2022 20:38:16 +0100 Source: norsnet Binary: norsnet Architecture: source all Version: 1.0.17-7 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: norsnet - tool to identify unstructured loops in proteins Changes: norsnet (1.0.17-7) unstable; urgency=medium . * Stop using pp_popcon * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Add missing build dependency on dh addon. Checksums-Sha1: fe4482e43e4644e424b147d7965b328861834aa2 1143 norsnet_1.0.17-7.dsc e4d4ac6d3ed3cbbeb16e90cebc2811717de6254d 4608 norsnet_1.0.17-7.debian.tar.xz 0bb85b48d1091bd8a6c6fcd5fcc7c740070f2b34 42520 norsnet_1.0.17-7_all.deb 9a1ad010ed2d7646f12de7d2abc8fdfa04ed4fb0 5018 norsnet_1.0.17-7_amd64.buildinfo Checksums-Sha256: e33ec532a81a886e19bad86ddc51b8b829d6fbae822b88325d0e464d1cfbe4ce 1143 norsnet_1.0.17-7.dsc ac42e33cb7e90e25e995d183fc657086f14ae8c36286248ed6993b67114ad4ec 4608 norsnet_1.0.17-7.debian.tar.xz 1d783aafc172d49c1eddcd3541e3d394a8cdb26408d56875ede7b4b56ee6eb35 42520 norsnet_1.0.17-7_all.deb 0812dff7d9e9518efacec1c6f17599fa15116f9edb2991537fff011aad09b1b8 5018 norsnet_1.0.17-7_amd64.buildinfo Files: 83eb90c5d62b6f0201cbed56f5f600df 1143 science optional norsnet_1.0.17-7.dsc 420815048066bb484170a9bb2132f6a6 4608 science optional norsnet_1.0.17-7.debian.tar.xz e42bc4e4eee4073fa716cc444e06efb1 42520 science optional norsnet_1.0.17-7_all.deb c2f500451319facf68141a60e98eb635 5018 science optional norsnet_1.0.17-7_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: norsnet Binary: norsnet Architecture: all source Version: 1.0.17-7 Checksums-Md5: 83eb90c5d62b6f0201cbed56f5f600df 1143 norsnet_1.0.17-7.dsc e42bc4e4eee4073fa716cc444e06efb1 42520 norsnet_1.0.17-7_all.deb Checksums-Sha1: fe4482e43e4644e424b147d7965b328861834aa2 1143 norsnet_1.0.17-7.dsc 0bb85b48d1091bd8a6c6fcd5fcc7c740070f2b34 42520 norsnet_1.0.17-7_all.deb Checksums-Sha256: e33ec532a81a886e19bad86ddc51b8b829d6fbae822b88325d0e464d1cfbe4ce 1143 norsnet_1.0.17-7.dsc 1d783aafc172d49c1eddcd3541e3d394a8cdb26408d56875ede7b4b56ee6eb35 42520 norsnet_1.0.17-7_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 04 Aug 2024 20:43:56 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.4), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), binutils-x86-64-linux-gnu (= 2.42.90.20240720-2), bsdextrautils (= 2.40.2-1), bsdutils (= 1:2.40.2-1), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-4), cpp-13-x86-64-linux-gnu (= 13.3.0-4), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-4), gcc-13-base (= 13.3.0-4), gcc-13-x86-64-linux-gnu (= 13.3.0-4), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.42.90.20240720-2), libblkid1 (= 2.40.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.42.90.20240720-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-1), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.2.0-1), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsmartcols1 (= 2.40.2-1), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsystemd0 (= 256.4-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-1), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), patch (= 2.7.6-7), perl (= 5.40.0-1), perl-base (= 5.40.0-1), perl-modules-5.40 (= 5.40.0-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-1), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1642534696" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ norsnet_1.0.17-7_all.deb ------------------------ new Debian package, version 2.0. size 42520 bytes: control archive=1328 bytes. 1114 bytes, 25 lines control 931 bytes, 13 lines md5sums Package: norsnet Version: 1.0.17-7 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 212 Depends: profnet-norsnet Recommends: blast2, librg-utils-perl, profphd, profbval Section: science Priority: optional Homepage: https://www.rostlab.org/owiki/index.php/Norsnet Description: tool to identify unstructured loops in proteins NORSnet can distinguish between very long contiguous segments with non-regular secondary structure (NORS regions) and well-folded proteins. . NORSnet was trained on predicted information rather than on experimental data. This allows NORSnet to reach into regions in sequence space that are not covered by specialized disorder predictors. One disadvantage of this approach is that it is not optimal for the identification of the "average" disordered region. . NORSnet takes the following input, further described on norsnet(1): * a protein sequence in a FASTA file * secondary structure and solvent accessibility prediction by prof(1) * an HSSP file * flexible/rigid residues prediction by profbval(1) drwxr-xr-x root/root 0 2022-01-18 19:38 ./ drwxr-xr-x root/root 0 2022-01-18 19:38 ./usr/ drwxr-xr-x root/root 0 2022-01-18 19:38 ./usr/bin/ -rwxr-xr-x root/root 1398 2022-01-18 19:38 ./usr/bin/norsnet drwxr-xr-x root/root 0 2022-01-18 19:38 ./usr/share/ drwxr-xr-x root/root 0 2022-01-18 19:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-18 19:38 ./usr/share/doc/norsnet/ -rw-r--r-- root/root 714 2022-01-18 19:38 ./usr/share/doc/norsnet/changelog.Debian.gz -rw-r--r-- root/root 887 2013-09-30 17:46 ./usr/share/doc/norsnet/changelog.gz -rw-r--r-- root/root 2436 2022-01-18 19:38 ./usr/share/doc/norsnet/copyright drwxr-xr-x root/root 0 2022-01-18 19:38 ./usr/share/doc/norsnet/examples/ -rw-r--r-- root/root 84024 2012-08-14 11:33 ./usr/share/doc/norsnet/examples/cad23-fil.hssp -rw-r--r-- root/root 37299 2012-08-14 11:33 ./usr/share/doc/norsnet/examples/cad23-fil.rdbProf -rw-r--r-- root/root 354 2012-08-14 11:32 ./usr/share/doc/norsnet/examples/cad23.f -rw-r--r-- root/root 8326 2012-08-14 11:41 ./usr/share/doc/norsnet/examples/cad23.norsnet -rw-r--r-- root/root 7508 2012-08-14 11:41 ./usr/share/doc/norsnet/examples/cad23.profbval drwxr-xr-x root/root 0 2022-01-18 19:38 ./usr/share/man/ drwxr-xr-x root/root 0 2022-01-18 19:38 ./usr/share/man/man1/ -rw-r--r-- root/root 2855 2022-01-18 19:38 ./usr/share/man/man1/norsnet.1.gz drwxr-xr-x root/root 0 2022-01-18 19:38 ./usr/share/norsnet/ drwxr-xr-x root/root 0 2022-01-18 19:38 ./usr/share/norsnet/scr/ -rwxr-xr-x root/root 20351 2022-01-18 19:38 ./usr/share/norsnet/scr/NORSnet.pl -rwxr-xr-x root/root 8288 2022-01-18 19:38 ./usr/share/norsnet/scr/createDataFile.pl -rw-r--r-- root/root 22592 2022-01-18 19:38 ./usr/share/norsnet/scr/jct50-short +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 1664 Build-Time: 9 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 8 Job: /srv/debomatic/incoming/norsnet_1.0.17-7.dsc Machine Architecture: amd64 Package: norsnet Package-Time: 26 Source-Version: 1.0.17-7 Space: 1664 Status: successful Version: 1.0.17-7 -------------------------------------------------------------------------------- Finished at 2024-08-04T20:43:56Z Build needed 00:00:26, 1664k disk space