sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | mipe 1.1-9 (amd64) Sun, 04 Aug 2024 15:52:22 +0000 | +==============================================================================+ Package: mipe Version: 1.1-9 Source Version: 1.1-9 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-91e4984b-1b4f-4ba9-aeba-8ea24d5b2482' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup mipe_1.1-9 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup mipe_1.1-9 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/mipe-9Hs5F0/resolver-nIHi8t' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://localhost:3142/debian sid InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/mipe_1.1-9.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/mipe-9Hs5F0/mipe-1.1' with '<>' I: NOTICE: Log filtering will replace 'build/mipe-9Hs5F0' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [643 B] Get:5 copy:/<>/apt_archive ./ Packages [655 B] Fetched 1907 B in 0s (143 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After this operation, 75.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [884 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-1 [96.1 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.7 MB in 0s (96.3 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22966 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../31-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.16) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.4 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-1 bsdutils_1:2.40.2-1 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-4 g++-13-x86-64-linux-gnu_13.3.0-4 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-4 gcc-13-base_13.3.0-4 gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libblkid1_2.40.2-1 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.2.0-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-4 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.42.90.20240720-2 libhogweed6t64_3.10-1 libhwasan0_14.2.0-1 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2+b1 liblsan0_14.2.0-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-1 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-1 libpipeline1_1.5.7-2 libquadmath0_14.2.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b3 libsemanage-common_3.5-1 libsemanage2_3.5-1+b4 libsepol2_3.5-2+b1 libsframe1_2.42.90.20240720-2 libsmartcols1_2.40.2-1 libsqlite3-0_3.46.0-1 libssl3t64_3.3.1-2 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 libsystemd0_256.4-2 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-1 libubsan1_14.2.0-1 libuchardet0_0.0.8-1+b1 libudev1_256.4-2 libunistring5_1.2-1 libuuid1_2.40.2-1 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.9.12-1 locales-all_2.39-6 login_1:4.15.3-3 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.15.3-3 patch_2.7.6-7 perl_5.40.0-1 perl-base_5.40.0-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-1 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-1 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mipe Binary: mipe Architecture: all Version: 1.1-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Charles Plessy Homepage: http://mipe.sourceforge.net Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/mipe Vcs-Git: https://salsa.debian.org/med-team/mipe.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl Package-List: mipe deb science optional arch=all Checksums-Sha1: 336c3ef7d7a76cc82b6598bb55156971e03a5f16 70837 mipe_1.1.orig.tar.gz 083d6685badf6ad87a65f82676136bbd33a1f9ce 5236 mipe_1.1-9.debian.tar.xz Checksums-Sha256: dd7de3b0d46c2427189a213983a4cf88bb23732ca8e40b4f7ad3b87ed508b475 70837 mipe_1.1.orig.tar.gz a9cf9cf841979bf75ae81950c8701e3bbc8bb08ce970be01fb7ce43035d96055 5236 mipe_1.1-9.debian.tar.xz Files: 7290037a4a13c830cccd4939a353b11b 70837 mipe_1.1.orig.tar.gz 18a0e74661c33d763dd8c67345bf6930 5236 mipe_1.1-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAyqhgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHZSg//U/5IhNPDp4n5OUeRuBWLoxRhbcaJxuHH seqr6GDi6mP9tcOAJZfHdPLRvN43gEKskn9Ne5RAfrkx8xytdtnYyFscQidUl7Wo Ez1tYEirj1sUCO+E12YT+Ji36zJp6v9hlfA46e05JTZS8+++LYArbEhxADgLReAU 1tXBTuq/6/QcFGqh3m57udzgzdsUJHXs3qTw+zIazknPrtWbvAlhEgdFJDk+XVw8 cjV+QfQPocYa70Yu3hrQGciI2vxrOEVrsgLAsgq2dAw2lAmheg0HyscUSBM3frmo L3PyFgvz0gBL1jj2WpBu4IGjevhOTTgyIS1y92eL0xKQLXDBEE5fPSAi4r85/n0H aNQPB41zxceH6vmWCfGidzga+NGjvV4h45dIeq7IyFVDCoG5qTotJjJ1vYPqKUfI depMmhxLvfh+/8ksRECoJjCSfr4HuOwtSOh9aQHukdivo9vE8XqbY46MMQHp9fhm ccPsYKSSHzlP+ZIail3DrFmlt5js5GDYi8dLB2nxssZWRoMckUMiJPXgOW23qAB6 RA7mScbPQUyBvA/QQaQmHIH4v3sIHBfbmlhC2nwtQLf1RDar4Gm1yzVJx8TCd60s iE74iNoB6qUZpPFBdrogRqOOKRw7VQVjN928rgHg+qOkeLUZiW22J1h1UGw8lDrC 5/8BEzkixTc= =auGY -----END PGP SIGNATURE----- gpgv: Signature made Sun Feb 21 18:44:40 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mipe_1.1-9.dsc: no acceptable signature found dpkg-source: info: extracting mipe in /<> dpkg-source: info: unpacking mipe_1.1.orig.tar.gz dpkg-source: info: unpacking mipe_1.1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_mipe0.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network mipe_1.1-9 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network mipe_1.1-9 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-91e4984b-1b4f-4ba9-aeba-8ea24d5b2482 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package mipe dpkg-buildpackage: info: source version 1.1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Shruti Sridhar dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building mipe using existing ./mipe_1.1.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building mipe in mipe_1.1-9.debian.tar.xz dpkg-source: info: building mipe in mipe_1.1-9.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/mipe/ debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # remove *.pl extension and create manpages using pod2man for i in *.pl; do \ bname=`echo $i | sed -e 's/.pl$//'`; \ cp -a $i /<>/debian/mipe/usr/bin/$bname ; \ pod2man $i > /<>/debian/mipe/usr/share/man/man1/${bname}.1 ; \ done make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mipe' in '../mipe_1.1-9_all.deb'. dpkg-genbuildinfo -O../mipe_1.1-9_amd64.buildinfo dpkg-genchanges -O../mipe_1.1-9_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-04T15:52:43Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mipe_1.1-9_amd64.changes: ------------------------- Format: 1.8 Date: Sun, 21 Feb 2021 23:47:24 +0530 Source: mipe Binary: mipe Architecture: source all Version: 1.1-9 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Shruti Sridhar Description: mipe - Tools to store PCR-derived data Closes: 890788 Changes: mipe (1.1-9) unstable; urgency=medium . * Team upload. * Add autopkgtests Closes: #890788 * Add data for tests * Add example for tests * Add docs * Add source for test data Checksums-Sha1: a7e80954cc305354675aebc3f7ea33ec879006e8 1083 mipe_1.1-9.dsc 90f5be2d963afd47b1a956a3ea7a27d9b6c1ced6 5244 mipe_1.1-9.debian.tar.xz c47de94f4f7ebebbc164977b47dc77608350514b 43696 mipe_1.1-9_all.deb e46731185094a801c0533a0b4ebcac773b432cf4 4964 mipe_1.1-9_amd64.buildinfo Checksums-Sha256: c0ebc7907c8826796c85cc6b8d3a716a32838345985ac6f0ce27ca515dbb2b84 1083 mipe_1.1-9.dsc f4aa0f03c2d64e76dc0fdf50488e80822382e96ab1d162a48559aaf482ebfe70 5244 mipe_1.1-9.debian.tar.xz aa945bc0270f2afabb76ee2a1a5fe7babc701ccbc9e7b990cfb894b6029a23a7 43696 mipe_1.1-9_all.deb 2c8a6aa18650ea2c2d0237e4e9c0aaf0dcdd8e59867bc54a2d02cc7094981d61 4964 mipe_1.1-9_amd64.buildinfo Files: 160861f3a8d8602eb3a781f57cadee9c 1083 science optional mipe_1.1-9.dsc 8d29d5c048ac42b3ff888c46d1991400 5244 science optional mipe_1.1-9.debian.tar.xz 1c722307bf4f947d1c97ee68d0271954 43696 science optional mipe_1.1-9_all.deb f331322cd09ed228520607a786a880d5 4964 science optional mipe_1.1-9_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: mipe Binary: mipe Architecture: all source Version: 1.1-9 Checksums-Md5: 160861f3a8d8602eb3a781f57cadee9c 1083 mipe_1.1-9.dsc 1c722307bf4f947d1c97ee68d0271954 43696 mipe_1.1-9_all.deb Checksums-Sha1: a7e80954cc305354675aebc3f7ea33ec879006e8 1083 mipe_1.1-9.dsc c47de94f4f7ebebbc164977b47dc77608350514b 43696 mipe_1.1-9_all.deb Checksums-Sha256: c0ebc7907c8826796c85cc6b8d3a716a32838345985ac6f0ce27ca515dbb2b84 1083 mipe_1.1-9.dsc aa945bc0270f2afabb76ee2a1a5fe7babc701ccbc9e7b990cfb894b6029a23a7 43696 mipe_1.1-9_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 04 Aug 2024 15:52:42 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.4), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), binutils-x86-64-linux-gnu (= 2.42.90.20240720-2), bsdextrautils (= 2.40.2-1), bsdutils (= 1:2.40.2-1), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-4), cpp-13-x86-64-linux-gnu (= 13.3.0-4), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-4), gcc-13-base (= 13.3.0-4), gcc-13-x86-64-linux-gnu (= 13.3.0-4), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.42.90.20240720-2), libblkid1 (= 2.40.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.42.90.20240720-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-1), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.2.0-1), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsmartcols1 (= 2.40.2-1), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsystemd0 (= 256.4-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-1), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), patch (= 2.7.6-7), perl (= 5.40.0-1), perl-base (= 5.40.0-1), perl-modules-5.40 (= 5.40.0-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-1), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1613931444" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mipe_1.1-9_all.deb ------------------ new Debian package, version 2.0. size 43696 bytes: control archive=2248 bytes. 1076 bytes, 23 lines control 3328 bytes, 52 lines md5sums Package: mipe Version: 1.1-9 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 199 Depends: libxml-twig-perl, libxml-perl, perl:any Section: science Priority: optional Homepage: http://mipe.sourceforge.net Description: Tools to store PCR-derived data MIPE provides a standard format to exchange and/or storage of all information associated with PCR experiments using a flat text file. This will: * allow for exchange of PCR data between researchers/laboratories * enable traceability of the data * prevent problems when submitting data to dbSTS or dbSNP * enable the writing of standard scripts to extract data (e.g. a list of PCR primers, SNP positions or haplotypes for different animals) . Although this tool can be used for data storage, it's primary focus should be data exchange. For larger repositories, relational databases are more appropriate for storage of these data. The MIPE format could then be used as a standard format to import into and/or export from these databases. drwxr-xr-x root/root 0 2021-02-21 18:17 ./ drwxr-xr-x root/root 0 2021-02-21 18:17 ./usr/ drwxr-xr-x root/root 0 2021-02-21 18:17 ./usr/bin/ -rwxr-xr-x root/root 9172 2005-07-20 12:41 ./usr/bin/csv2mipe -rwxr-xr-x root/root 5120 2005-07-20 12:41 ./usr/bin/genotype2mipe -rwxr-xr-x root/root 9595 2021-02-21 18:17 ./usr/bin/mipe06to07 -rwxr-xr-x root/root 12193 2021-02-21 18:17 ./usr/bin/mipe08to09 -rwxr-xr-x root/root 13428 2021-02-21 18:17 ./usr/bin/mipe0_9to1_0 -rwxr-xr-x root/root 9329 2005-07-20 12:41 ./usr/bin/mipe2dbSTS -rwxr-xr-x root/root 2240 2005-07-20 12:41 ./usr/bin/mipe2fas -rwxr-xr-x root/root 3050 2005-07-20 12:41 ./usr/bin/mipe2genotypes -rwxr-xr-x root/root 11240 2005-07-20 12:41 ./usr/bin/mipe2html -rwxr-xr-x root/root 3217 2005-07-20 12:41 ./usr/bin/mipe2pcroverview -rwxr-xr-x root/root 2714 2005-07-20 12:41 ./usr/bin/mipe2pcrprimers -rwxr-xr-x root/root 3010 2005-07-20 12:41 ./usr/bin/mipe2putativesbeprimers -rwxr-xr-x root/root 3138 2005-07-20 12:41 ./usr/bin/mipe2sbeprimers -rwxr-xr-x root/root 5658 2005-07-20 12:41 ./usr/bin/mipe2snps -rwxr-xr-x root/root 6968 2005-07-20 12:41 ./usr/bin/mipeCheckSanity -rwxr-xr-x root/root 1925 2005-07-20 12:41 ./usr/bin/removePcrFromMipe -rwxr-xr-x root/root 2465 2005-07-20 12:41 ./usr/bin/removeSbeFromMipe -rwxr-xr-x root/root 2544 2005-07-20 12:41 ./usr/bin/removeSnpFromMipe -rwxr-xr-x root/root 4027 2005-07-20 12:41 ./usr/bin/sbe2mipe -rwxr-xr-x root/root 3636 2005-07-20 12:41 ./usr/bin/snp2mipe -rwxr-xr-x root/root 4244 2005-07-20 12:41 ./usr/bin/snpPosOnDesign -rwxr-xr-x root/root 3115 2005-07-20 12:41 ./usr/bin/snpPosOnSource drwxr-xr-x root/root 0 2021-02-21 18:17 ./usr/share/ drwxr-xr-x root/root 0 2021-02-21 18:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-02-21 18:17 ./usr/share/doc/mipe/ -rw-r--r-- root/root 1880 2005-07-20 12:41 ./usr/share/doc/mipe/README -rw-r--r-- root/root 502 2021-02-21 18:17 ./usr/share/doc/mipe/README.test -rw-r--r-- root/root 594 2021-02-21 18:17 ./usr/share/doc/mipe/changelog.Debian.gz -rw-r--r-- root/root 1379 2021-02-21 18:17 ./usr/share/doc/mipe/copyright drwxr-xr-x root/root 0 2021-02-21 18:17 ./usr/share/doc/mipe/examples/ -rw-r--r-- root/root 969 2021-02-21 18:17 ./usr/share/doc/mipe/examples/template.mipe -rw-r--r-- root/root 826 2021-02-21 18:17 ./usr/share/doc/mipe/run-unit-test drwxr-xr-x root/root 0 2021-02-21 18:17 ./usr/share/man/ drwxr-xr-x root/root 0 2021-02-21 18:17 ./usr/share/man/man1/ -rw-r--r-- root/root 1279 2021-02-21 18:17 ./usr/share/man/man1/csv2mipe.1.gz -rw-r--r-- root/root 1117 2021-02-21 18:17 ./usr/share/man/man1/genotype2mipe.1.gz -rw-r--r-- root/root 984 2021-02-21 18:17 ./usr/share/man/man1/mipe06to07.1.gz -rw-r--r-- root/root 984 2021-02-21 18:17 ./usr/share/man/man1/mipe08to09.1.gz -rw-r--r-- root/root 987 2021-02-21 18:17 ./usr/share/man/man1/mipe0_9to1_0.1.gz -rw-r--r-- root/root 1799 2021-02-21 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2021-02-21 18:17 ./usr/share/man/man1/removeSnpFromMipe.1.gz -rw-r--r-- root/root 1113 2021-02-21 18:17 ./usr/share/man/man1/sbe2mipe.1.gz -rw-r--r-- root/root 1101 2021-02-21 18:17 ./usr/share/man/man1/snp2mipe.1.gz -rw-r--r-- root/root 1066 2021-02-21 18:17 ./usr/share/man/man1/snpPosOnDesign.1.gz -rw-r--r-- root/root 1064 2021-02-21 18:17 ./usr/share/man/man1/snpPosOnSource.1.gz drwxr-xr-x root/root 0 2021-02-21 18:17 ./usr/share/mipe/ -rw-r--r-- root/root 2459 2005-07-20 12:41 ./usr/share/mipe/mipe.dtd -rw-r--r-- root/root 9842 2005-07-20 12:41 ./usr/share/mipe/mipe.xsd +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 872 Build-Time: 9 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 6 Job: /srv/debomatic/incoming/mipe_1.1-9.dsc Machine Architecture: amd64 Package: mipe Package-Time: 21 Source-Version: 1.1-9 Space: 872 Status: successful Version: 1.1-9 -------------------------------------------------------------------------------- Finished at 2024-08-04T15:52:43Z Build needed 00:00:21, 872k disk space