sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | minc-tools 2.3.00+dfsg-10 (amd64) Sun, 04 Aug 2024 15:49:36 +0000 | +==============================================================================+ Package: minc-tools Version: 2.3.00+dfsg-10 Source Version: 2.3.00+dfsg-10 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-70d199fa-bd12-46f5-bd6a-3728e7be1d35' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup minc-tools_2.3.00+dfsg-10 perl-5.40-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup minc-tools_2.3.00+dfsg-10 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/minc-tools-LYGOqn/resolver-S24I2D' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/minc-tools_2.3.00+dfsg-10.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/minc-tools-LYGOqn/minc-tools-2.3.00+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/minc-tools-LYGOqn' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev, libnifti2-dev, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev, libnifti2-dev, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [736 B] Get:5 copy:/<>/apt_archive ./ Packages [768 B] Fetched 2113 B in 0s (162 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdextrautils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file flex fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13t64 libbrotli-dev libbrotli1 libcairo2 libcom-err2 libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdebhelper-perl libelf1t64 libevent-2.1-7t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libice6 libicu-dev libicu72 libidn2-dev libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp25 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblzma-dev libmagic-mgc libmagic1t64 libminc-dev libminc2-5.3.0t64 libmpfi0 libnetcdf-dev libnetcdf19t64 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8 libngtcp2-dev libnifti2-2 libnifti2-dev libnifticdf-dev libnifticdf2 libniftiio-dev libniftiio2t64 libp11-kit-dev libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpkgconf3 libpng16-16t64 libpotrace0 libproc2-0 libpsl-dev libpsl5t64 libptexenc1 librhash0 librtmp-dev librtmp1 libsm6 libssh2-1-dev libssh2-1t64 libssl-dev libsynctex2 libsz2 libtasn1-6-dev libteckit0 libtexlua53-5 libtool libuchardet0 libunbound8 libuv1t64 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxml2-dev libxmu6 libxpm4 libxrender1 libxt6t64 libznz-dev libznz3 libzstd-dev libzzip-0-13t64 m4 man-db nettle-dev pkgconf pkgconf-bin po-debconf procps sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common xdg-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make flex-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcurl4-doc libidn-dev libkrb5-dev libldap2-dev low-memory-monitor gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc krb5-doc krb5-user libhdf5-doc icu-doc liblzma-doc libmpfi-doc netcdf-bin netcdf-doc libnghttp2-doc p11-kit-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex Recommended packages: libfl-dev curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libtasn1-doc libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdextrautils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file flex fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13t64 libbrotli-dev libbrotli1 libcairo2 libcom-err2 libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdebhelper-perl libelf1t64 libevent-2.1-7t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libice6 libicu-dev libicu72 libidn2-dev libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp25 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblzma-dev libmagic-mgc libmagic1t64 libminc-dev libminc2-5.3.0t64 libmpfi0 libnetcdf-dev libnetcdf19t64 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8 libngtcp2-dev libnifti2-2 libnifti2-dev libnifticdf-dev libnifticdf2 libniftiio-dev libniftiio2t64 libp11-kit-dev libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpkgconf3 libpng16-16t64 libpotrace0 libproc2-0 libpsl-dev libpsl5t64 libptexenc1 librhash0 librtmp-dev librtmp1 libsm6 libssh2-1-dev libssh2-1t64 libssl-dev libsynctex2 libsz2 libtasn1-6-dev libteckit0 libtexlua53-5 libtool libuchardet0 libunbound8 libuv1t64 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxml2-dev libxmu6 libxpm4 libxrender1 libxt6t64 libznz-dev libznz3 libzstd-dev libzzip-0-13t64 m4 man-db nettle-dev pkgconf pkgconf-bin po-debconf procps sbuild-build-depends-main-dummy sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common xdg-utils zlib1g-dev 0 upgraded, 162 newly installed, 0 to remove and 0 not upgraded. Need to get 117 MB of archives. After this operation, 396 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 flex amd64 2.6.4-8.2+b2 [426 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-5 [64.7 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-5 [878 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-1 [96.1 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 bison amd64 2:3.8.2+dfsg-1+b1 [1175 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.2-2.1 [346 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:30 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.62.1-2 [74.9 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-7 [216 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.9.1-1 [463 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-5 [148 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.30.2-1 [2268 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.30.2-1 [11.4 MB] Get:43 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:49 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.10.10+repack-4 [23.5 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5 [207 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get:65 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b4 [313 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.4.0-1 [63.1 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.9.1-1 [470 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [181 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.20.0-1+b1 [583 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.6-2 [439 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.6-2 [439 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2 [123 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2 [208 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b2 [98.0 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b1 [329 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b1 [640 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1 [1316 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.6-2 [1381 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-3 [36.2 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-3 [29.9 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-3 [26.1 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.62.1-2 [115 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.4.0-1 [86.5 kB] Get:101 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.6.0-1 [23.8 kB] Get:102 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.6.0-1 [170 kB] Get:103 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1 [77.4 kB] Get:104 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get:105 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b4 [67.7 kB] Get:106 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.1-2 [2739 kB] Get:107 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.0-7 [357 kB] Get:108 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [368 kB] Get:109 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.9.1-1 [582 kB] Get:110 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-1 [837 kB] Get:111 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.81.1-3 [1496 kB] Get:112 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:113 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:114 http://deb.debian.org/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get:115 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-4 [130 kB] Get:116 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-4 [89.5 kB] Get:117 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get:118 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-4 [40.5 kB] Get:119 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-4 [21.4 kB] Get:120 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get:121 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get:122 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get:123 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.10.10+repack-4 [2652 kB] Get:124 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get:125 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get:126 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5 [10.4 MB] Get:127 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-4 [157 kB] Get:128 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.2-2 [299 kB] Get:129 http://deb.debian.org/debian unstable/main amd64 libnetcdf19t64 amd64 1:4.9.2-6 [471 kB] Get:130 http://deb.debian.org/debian unstable/main amd64 libminc2-5.3.0t64 amd64 2.4.06-2.1+b1 [232 kB] Get:131 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.12.7+dfsg-3+b1 [145 kB] Get:132 http://deb.debian.org/debian unstable/main amd64 libnetcdf-dev amd64 1:4.9.2-6 [103 kB] Get:133 http://deb.debian.org/debian unstable/main amd64 libminc-dev amd64 2.4.06-2.1+b1 [70.0 kB] Get:134 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-3 [35.1 kB] Get:135 http://deb.debian.org/debian unstable/main amd64 libznz3 amd64 3.0.1-9.1 [10.1 kB] Get:136 http://deb.debian.org/debian unstable/main amd64 libnifti2-2 amd64 3.0.1-9.1 [75.8 kB] Get:137 http://deb.debian.org/debian unstable/main amd64 libnifticdf2 amd64 3.0.1-9.1 [52.4 kB] Get:138 http://deb.debian.org/debian unstable/main amd64 libnifticdf-dev amd64 3.0.1-9.1 [58.0 kB] Get:139 http://deb.debian.org/debian unstable/main amd64 libniftiio2t64 amd64 3.0.1-9.1 [57.8 kB] Get:140 http://deb.debian.org/debian unstable/main amd64 libniftiio-dev amd64 3.0.1-9.1 [68.0 kB] Get:141 http://deb.debian.org/debian unstable/main amd64 libznz-dev amd64 3.0.1-9.1 [10.4 kB] Get:142 http://deb.debian.org/debian unstable/main amd64 libnifti2-dev amd64 3.0.1-9.1 [95.3 kB] Get:143 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB] Get:144 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b1 [9176 B] Get:145 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b1 [25.2 kB] Get:146 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-4 [49.1 kB] Get:147 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get:148 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-4 [62.5 kB] Get:149 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1 [339 kB] Get:150 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-4 [114 kB] Get:151 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get:152 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get:153 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get:154 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get:155 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB] Get:156 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.3 [56.2 kB] Get:157 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:158 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.18 [32.5 kB] Get:159 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2024.20240313.70630+ds-4 [8493 kB] Get:160 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:161 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2024.20240706-1 [22.7 MB] Get:162 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2024.20240706-1 [1274 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 117 MB in 1s (99.7 MB/s) Selecting previously unselected package m4. (Reading database ... 22966 files and directories currently installed.) Preparing to unpack .../000-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package flex. Preparing to unpack .../001-flex_2.6.4-8.2+b2_amd64.deb ... Unpacking flex (2.6.4-8.2+b2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-5_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-5_amd64.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. 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Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package bison. Preparing to unpack .../019-bison_2%3a3.8.2+dfsg-1+b1_amd64.deb ... Unpacking bison (2:3.8.2+dfsg-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../020-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../021-libxml2_2.12.7+dfsg-3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg-3+b1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../022-libarchive13t64_3.7.2-2.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.2-2.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../023-libbrotli1_1.1.0-2+b4_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../024-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../025-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../026-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../027-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../028-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../029-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libnghttp2-14:amd64. 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Preparing to unpack .../066-libfreetype6_2.13.2+dfsg-1+b4_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../067-libfontconfig1_2.15.0-1.1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-1.1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../068-libpixman-1-0_0.42.2-1+b1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.42.2-1+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../069-libxau6_1%3a1.0.9-1+b1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1+b1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../070-libxdmcp6_1%3a1.1.2-3+b1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../071-libxcb1_1.17.0-2_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2) ... 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Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.81.1-3) ... No schema files found: doing nothing. Setting up libunbound8:amd64 (1.20.0-1+b1) ... Setting up libpkgconf3:amd64 (1.8.1-3) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2+b1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.3) ... Setting up libgnutls-dane0t64:amd64 (3.8.6-2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libteckit0:amd64 (2.5.12+ds1-1) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:amd64 (2024.20240313.70630+ds-4) ... Setting up libproc2-0:amd64 (2:4.0.4-5) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:amd64 (3.3.1-2) ... 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Setting up libniftiio2t64:amd64 (3.0.1-9.1) ... Setting up bison (2:3.8.2+dfsg-1+b1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up fonts-lmodern (2.005-1) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libngtcp2-16:amd64 (1.6.0-1) ... Setting up cmake-data (3.30.2-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.0-7) ... Setting up libtasn1-6-dev:amd64 (4.19.0-3+b2) ... Setting up libicu-dev:amd64 (72.1-5) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libbrotli-dev:amd64 (1.1.0-2+b4) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up libp11-kit-dev:amd64 (0.25.5-2) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libsynctex2:amd64 (2024.20240313.70630+ds-4) ... Setting up libpotrace0:amd64 (1.16-2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up flex (2.6.4-8.2+b2) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2+b1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b1) ... Setting up nettle-dev:amd64 (3.10-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libniftiio-dev:amd64 (3.0.1-9.1) ... Setting up libaec-dev:amd64 (1.1.3-1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.6.0-1) ... Setting up libngtcp2-dev:amd64 (1.6.0-1) ... Setting up pkgconf:amd64 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg-3+b1) ... Setting up libptexenc1:amd64 (2024.20240313.70630+ds-4) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libznz-dev:amd64 (3.0.1-9.1) ... Setting up libnifti2-2:amd64 (3.0.1-9.1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up ucf (3.0043+nmu1) ... Setting up libssh2-1-dev:amd64 (1.11.0-7) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libnifti2-dev (3.0.1-9.1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libsm6:amd64 (2:1.2.3-1+b1) ... Setting up libarchive13t64:amd64 (3.7.2-2.1) ... Setting up libgnutls28-dev:amd64 (3.8.6-2) ... Setting up libpaper1:amd64 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up libnghttp2-dev:amd64 (1.62.1-2) ... Setting up libxi6:amd64 (2:1.8.1-1) ... Setting up libcurl4t64:amd64 (8.9.1-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:amd64 (8.9.1-1) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up cmake (3.30.2-1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Setting up libnetcdf19t64:amd64 (1:4.9.2-6) ... Setting up libxmu6:amd64 (2:1.1.3-3+b2) ... Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libhdf5-fortran-102t64:amd64 (1.10.10+repack-4) ... Setting up debhelper (13.16) ... Setting up libxaw7:amd64 (2:1.0.14-1+b2) ... Setting up libcurl4-gnutls-dev:amd64 (8.9.1-1) ... Setting up texlive-binaries (2024.20240313.70630+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-4) ... Setting up texlive-base (2024.20240706-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libminc2-5.3.0t64:amd64 (2.4.06-2.1+b1) ... Setting up libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-4) ... Setting up texlive-latex-base (2024.20240706-1) ... Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnetcdf-dev (1:4.9.2-6) ... Setting up libminc-dev:amd64 (2.4.06-2.1+b1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.4 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 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gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hdf5-helpers_1.10.10+repack-4 hostname_3.23+nmu2 icu-devtools_72.1-5 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libaec-dev_1.1.3-1 libaec0_1.1.3-1 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.2-2.1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libblkid1_2.40.2-1 libbrotli-dev_1.1.0-2+b4 libbrotli1_1.1.0-2+b4 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcairo2_1.18.0-3+b1 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.2.0-1 libcom-err2_1.47.1-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libcurl3t64-gnutls_8.9.1-1 libcurl4-gnutls-dev_8.9.1-1 libcurl4t64_8.9.1-1 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libevent-2.1-7t64_2.1.12-stable-10 libexpat1_2.6.2-1 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libfontconfig1_2.15.0-1.1 libfreetype6_2.13.2+dfsg-1+b4 libgcc-13-dev_13.3.0-4 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgfortran5_14.2.0-1 libglib2.0-0t64_2.81.1-3 libgmp-dev_2:6.3.0+dfsg-2+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgmpxx4ldbl_2:6.3.0+dfsg-2+b1 libgnutls-dane0t64_3.8.6-2 libgnutls-openssl27t64_3.8.6-2 libgnutls28-dev_3.8.6-2 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.42.90.20240720-2 libgraphite2-3_1.3.14-2 libgssapi-krb5-2_1.21.3-3 libharfbuzz0b_8.3.0-2+b1 libhdf5-103-1t64_1.10.10+repack-4 libhdf5-cpp-103-1t64_1.10.10+repack-4 libhdf5-dev_1.10.10+repack-4 libhdf5-fortran-102t64_1.10.10+repack-4 libhdf5-hl-100t64_1.10.10+repack-4 libhdf5-hl-cpp-100t64_1.10.10+repack-4 libhdf5-hl-fortran-100t64_1.10.10+repack-4 libhogweed6t64_3.10-1 libhwasan0_14.2.0-1 libice6_2:1.0.10-1+b1 libicu-dev_72.1-5 libicu72_72.1-5 libidn2-0_2.3.7-2 libidn2-dev_2.3.7-2 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libjpeg-dev_1:2.1.5-3 libjpeg62-turbo_1:2.1.5-3 libjpeg62-turbo-dev_1:2.1.5-3 libjsoncpp25_1.9.5-6+b2 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-3 libkpathsea6_2024.20240313.70630+ds-4 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2+b1 liblsan0_14.2.0-1 liblz4-1_1.9.4-3 liblzma-dev_5.6.2-2 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libminc-dev_2.4.06-2.1+b1 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Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-70d199fa-bd12-46f5-bd6a-3728e7be1d35 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steve M. Robbins dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building minc-tools using existing ./minc-tools_2.3.00+dfsg.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building minc-tools in minc-tools_2.3.00+dfsg-10.debian.tar.xz dpkg-source: info: building minc-tools in minc-tools_2.3.00+dfsg-10.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:6 (PROJECT): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:20 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.5 will be removed from a future version of CMake. 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file inttypes.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Found BISON: /usr/bin/bison (found version "3.8.2") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Configuring done (7.2s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build cd obj-x86_64-linux-gnu && make -j2 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> 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--verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target invert_raw_image make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 5%] [FLEX][lex] Building scanner with flex 2.6.4 cd /<>/progs && /usr/bin/flex -o/<>/obj-x86_64-linux-gnu/progs/lex.c /<>/progs/minccalc/lex.l [ 6%] [BISON][gram] Building parser with bison 3.8.2 cd /<>/progs && /usr/bin/bison --debug -d -o /<>/obj-x86_64-linux-gnu/progs/gram.c /<>/progs/minccalc/gram.y /<>/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr] /<>/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target mincaverage make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 7%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 cd /<>/progs && /usr/bin/flex -o/<>/obj-x86_64-linux-gnu/progs/ncgenyy.c /<>/progs/mincgen/ncgenyy.l [ 7%] [BISON][ncgentab] Building parser with bison 3.8.2 cd /<>/progs && /usr/bin/bison -d -o /<>/obj-x86_64-linux-gnu/progs/ncgentab.c /<>/progs/mincgen/ncgentab.y /<>/progs/mincgen/ncgentab.y: warning: 1 shift/reduce conflict [-Wconflicts-sr] /<>/progs/mincgen/ncgentab.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 8%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -MF CMakeFiles/minccalc.dir/minccalc/minccalc.c.o.d -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /<>/progs/minccalc/minccalc.c cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 9%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/main.c.o -MF CMakeFiles/mincgen.dir/mincgen/main.c.o.d -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /<>/progs/mincgen/main.c [ 10%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/ncgentab.c.o -MF CMakeFiles/mincgen.dir/ncgentab.c.o.d -o CMakeFiles/mincgen.dir/ncgentab.c.o -c /<>/obj-x86_64-linux-gnu/progs/ncgentab.c [ 10%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o -MF CMakeFiles/minccalc.dir/minccalc/eval.c.o.d -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /<>/progs/minccalc/eval.c [ 10%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/ncgenyy.c.o -MF CMakeFiles/mincgen.dir/ncgenyy.c.o.d -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /<>/obj-x86_64-linux-gnu/progs/ncgenyy.c [ 11%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o -MF CMakeFiles/minccalc.dir/minccalc/ident.c.o.d -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /<>/progs/minccalc/ident.c [ 12%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/node.c.o -MF CMakeFiles/minccalc.dir/minccalc/node.c.o.d -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /<>/progs/minccalc/node.c [ 13%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o -MF CMakeFiles/minccalc.dir/minccalc/optim.c.o.d -o CMakeFiles/minccalc.dir/minccalc/optim.c.o -c /<>/progs/minccalc/optim.c [ 14%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o -MF CMakeFiles/minccalc.dir/minccalc/scalar.c.o.d -o CMakeFiles/minccalc.dir/minccalc/scalar.c.o -c /<>/progs/minccalc/scalar.c [ 14%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o -MF CMakeFiles/minccalc.dir/minccalc/sym.c.o.d -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /<>/progs/minccalc/sym.c [ 15%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o -MF CMakeFiles/mincgen.dir/mincgen/escapes.c.o.d -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /<>/progs/mincgen/escapes.c [ 16%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o -MF CMakeFiles/minccalc.dir/minccalc/vector.c.o.d -o CMakeFiles/minccalc.dir/minccalc/vector.c.o -c /<>/progs/minccalc/vector.c [ 17%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o -MF CMakeFiles/mincgen.dir/mincgen/genlib.c.o.d -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /<>/progs/mincgen/genlib.c [ 18%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/lex.c.o -MF CMakeFiles/minccalc.dir/lex.c.o.d -o CMakeFiles/minccalc.dir/lex.c.o -c /<>/obj-x86_64-linux-gnu/progs/lex.c [ 19%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/gram.c.o -MF CMakeFiles/minccalc.dir/gram.c.o.d -o CMakeFiles/minccalc.dir/gram.c.o -c /<>/obj-x86_64-linux-gnu/progs/gram.c /<>/progs/mincgen/genlib.c: In function ‘gen_c’: /<>/progs/mincgen/genlib.c:161:28: warning: ‘%.16g’ directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~ In function ‘cstring’, inlined from ‘gen_c’ at /<>/progs/mincgen/genlib.c:361:20: /<>/progs/mincgen/genlib.c:161:27: note: assuming directive output of 22 bytes 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~~~ In file included from /usr/include/stdio.h:980, from /<>/progs/mincgen/genlib.c:11: In function ‘sprintf’, inlined from ‘cstring’ at /<>/progs/mincgen/genlib.c:161:9, inlined from ‘gen_c’ at /<>/progs/mincgen/genlib.c:361:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 24 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 19%] Linking C executable minccalc cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 [ 20%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o -MF CMakeFiles/mincgen.dir/mincgen/getfill.c.o.d -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /<>/progs/mincgen/getfill.c /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf [ 20%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/init.c.o -MF CMakeFiles/mincgen.dir/mincgen/init.c.o.d -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /<>/progs/mincgen/init.c [ 21%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/load.c.o -MF CMakeFiles/mincgen.dir/mincgen/load.c.o.d -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /<>/progs/mincgen/load.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 21%] Built target minccalc make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f 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/usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target mincgen make -f progs/CMakeFiles/mincconvert.dir/build.make 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-Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -MF CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o.d -o CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -c /<>/progs/mincconvert/mincconvert.c [ 24%] Linking C executable mincconcat cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 25%] Linking C executable mincconvert cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconvert.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target mincconvert make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix 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-I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -MF CMakeFiles/minccopy.dir/minccopy/minccopy.c.o.d -o CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -c /<>/progs/minccopy/minccopy.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/mincdump.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -MF CMakeFiles/mincdump.dir/mincdump/mincdump.c.o.d -o CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -c /<>/progs/mincdump/mincdump.c [ 27%] Linking C executable minccopy cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccopy.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic 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minccopy make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -MF CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o.d -o CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -c /<>/progs/mincexample/mincexample1.c [ 29%] Linking C executable mincexample1 cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib -lminc2 -lm -lz -lm -ldl -lnetcdf [ 30%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -MF CMakeFiles/mincdump.dir/mincdump/dumplib.c.o.d -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /<>/progs/mincdump/dumplib.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target mincexample1 make -f progs/CMakeFiles/mincexample2.dir/build.make 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-rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 32%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -MF CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o.d -o CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -c /<>/progs/mincexample/mincexample2.c [ 33%] Linking C executable mincexample2 cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib -lminc2 -lm -lz -lm -ldl -lnetcdf [ 33%] Built target mincdump make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 33%] Building C object progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -MF CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o.d -o CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -c /<>/progs/mincexpand/mincexpand.c [ 34%] Linking C executable mincexpand cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexpand.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -o mincexpand -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 34%] Built target mincexample2 make -f 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -MF CMakeFiles/mincextract.dir/mincextract/mincextract.c.o.d -o CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -c /<>/progs/mincextract/mincextract.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target mincexpand make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake "--color=" [ 36%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -MF CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o.d -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /<>/progs/Proglib/minc_endian.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -MF CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o.d -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /<>/progs/mincinfo/mincinfo.c [ 38%] Linking C executable mincextract cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Linking C executable mincinfo cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1 [ 39%] Built target mincextract make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake "--color=" /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -MF CMakeFiles/minclookup.dir/minclookup/minclookup.c.o.d -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /<>/progs/minclookup/minclookup.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target mincinfo make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -MF CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o.d -o CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -c /<>/progs/mincmakescalar/mincmakescalar.c [ 41%] Linking C executable minclookup cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf [ 42%] Linking C executable mincmakescalar cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target minclookup make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -MF CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o.d -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /<>/progs/mincmakevector/mincmakevector.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target mincmakescalar make -f 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-Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 44%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -MF CMakeFiles/mincmath.dir/mincmath/mincmath.c.o.d -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /<>/progs/mincmath/mincmath.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target mincmakevector make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -MF CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o.d -o CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -c /<>/progs/minc_modify_header/minc_modify_header.c [ 46%] Linking C executable mincmath cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf [ 46%] Linking C executable minc_modify_header cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target mincmath make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -MF CMakeFiles/mincresample.dir/mincresample/mincresample.c.o.d -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /<>/progs/mincresample/mincresample.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target minc_modify_header make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 48%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /<>/progs/mincreshape/mincreshape.c /<>/progs/mincresample/mincresample.c: In function ‘create_output_file.constprop’: /<>/progs/mincresample/mincresample.c:1454:39: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~ /<>/progs/mincresample/mincresample.c:1454:36: note: directive argument in the range [0, 2147483647] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~~~~~ In file included from /usr/include/stdio.h:980, from /<>/progs/mincresample/mincresample.c:207: In function ‘sprintf’, inlined from ‘create_output_file.constprop’ at /<>/progs/mincresample/mincresample.c:1454:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 266 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 48%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -MF CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o.d -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /<>/progs/mincresample/resample_volumes.c [ 48%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /<>/progs/mincreshape/copy_data.c [ 49%] Linking C executable mincreshape cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 49%] Built target mincreshape make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -MF CMakeFiles/mincstats.dir/mincstats/mincstats.c.o.d -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /<>/progs/mincstats/mincstats.c [ 51%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /<>/progs/Proglib/convert_origin_to_start.c [ 52%] Linking C executable mincresample cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 52%] Built target mincresample make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 53%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -MF CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o.d -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /<>/progs/minctoraw/minctoraw.c [ 54%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -MF CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o.d -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /<>/progs/Proglib/minc_endian.c [ 54%] Linking C executable minctoraw cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 54%] Built target minctoraw make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend [ 55%] Linking C executable mincstats make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake "--color=" cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -MF CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o.d -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /<>/progs/mincwindow/mincwindow.c [ 57%] Linking C executable mincwindow cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target mincstats make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -c /<>/progs/mincmorph/mincmorph.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target mincwindow make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend make[3]: Entering 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-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -MF CMakeFiles/mincsample.dir/mincsample/mincsample.c.o.d -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /<>/progs/mincsample/mincsample.c [ 59%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -MF CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o.d -o 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-I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /<>/progs/mincmorph/kernel_ops.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target mincsample make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f 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cmake_link_script CMakeFiles/mincmorph.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf [ 64%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /<>/progs/Proglib/convert_origin_to_start.c [ 64%] Linking C executable rawtominc cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target mincmorph make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -MF CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o.d -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /<>/progs/coordinates/voxeltoworld.c [ 66%] Linking C executable voxeltoworld cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 66%] Built target rawtominc make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -MF CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o.d 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progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o -MF CMakeFiles/transformtags.dir/xfm/transformtags.c.o.d -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /<>/progs/xfm/transformtags.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 69%] Linking C executable transformtags [ 69%] Built target worldtovoxel cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake "--color=" /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -MF CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o.d -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /<>/progs/xfm/xfmconcat.c [ 71%] Linking C executable xfmconcat cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 71%] Built target transformtags make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building C 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progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -MF CMakeFiles/mincblob.dir/mincblob/mincblob.c.o.d -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /<>/progs/mincblob/mincblob.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target xfminvert make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/progs /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/progs /<>/obj-x86_64-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 75%] Building C object progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/progs/Proglib -I/<>/obj-x86_64-linux-gnu/progs -I/<>/progs/minccalc -I/<>/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -MF CMakeFiles/minccmp.dir/minccmp/minccmp.c.o.d -o CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -c /<>/progs/minccmp/minccmp.c [ 75%] Linking C executable mincblob cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target mincblob make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/conversion /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/conversion /<>/obj-x86_64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 75%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /<>/conversion/Acr_nema/acr_io.c [ 76%] Linking C executable minccmp cd /<>/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target minccmp make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/conversion /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/conversion /<>/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake "--color=" [ 77%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -c /<>/conversion/Acr_nema/dicom_client_routines.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /<>/conversion/ecattominc/ecattominc.c [ 79%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /<>/conversion/Acr_nema/dicom_network.c [ 80%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /<>/conversion/ecattominc/insertblood.c [ 81%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /<>/conversion/ecattominc/ecat_file.c [ 81%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /<>/conversion/ecattominc/machine_indep.c [ 82%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/element.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -c /<>/conversion/Acr_nema/element.c [ 83%] Linking C executable ecattominc cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 83%] Built target ecattominc make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/conversion /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/conversion /<>/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /<>/conversion/minctoecat/minctoecat.c [ 84%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /<>/conversion/Acr_nema/file_io.c [ 85%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /<>/conversion/Acr_nema/globals.c [ 86%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /<>/conversion/minctoecat/ecat_write.c [ 87%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/group.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /<>/conversion/Acr_nema/group.c [ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/message.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c /<>/conversion/Acr_nema/message.c [ 88%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /<>/conversion/minctoecat/machine_indep.c [ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c /<>/conversion/Acr_nema/value_repr.c [ 89%] Linking C executable minctoecat cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf [ 90%] Linking C static library libacr_nema.a cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 /usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o /usr/bin/ranlib libacr_nema.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 90%] Built target acr_nema make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/conversion /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/conversion /<>/obj-x86_64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -MF CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o.d -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /<>/conversion/nifti1/mnc2nii.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target minctoecat make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/conversion /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/conversion /<>/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -MF CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o.d -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /<>/conversion/nifti1/nii2mnc.c /<>/conversion/nifti1/nii2mnc.c: In function ‘main’: /<>/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Linking C executable mnc2nii cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lniftiio -lm -lminc2 -lm -lz -ldl -lnetcdf -lniftiio make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target mnc2nii make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/conversion /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/conversion /<>/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -MF CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o.d -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /<>/conversion/micropet/upet2mnc.c [ 94%] Linking C executable nii2mnc cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lniftiio -lm -lminc2 -lm -lz -ldl -lnetcdf -lniftiio /<>/conversion/micropet/upet2mnc.c:419:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /<>/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /<>/conversion/micropet/upet2mnc.c:419:36: note: in expansion of macro ‘VERSIONSTR’ 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /<>/conversion/micropet/upet2mnc.c: In function ‘upet_to_minc’: /<>/conversion/micropet/upet2mnc.c:537:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ /<>/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /<>/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro ‘VERSIONSTR’ 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target nii2mnc make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/conversion /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/conversion /<>/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /<>/conversion/dcm2mnc/dcm2mnc.c /<>/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /<>/conversion/dcm2mnc/dcm2mnc.c:168:41: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 168 | #define VERSION_STRING "2.01.02 built " __DATE__ " " __TIME__ | ^~~~~~~~ /<>/conversion/dcm2mnc/dcm2mnc.c:179:26: note: in expansion of macro ‘VERSION_STRING’ 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /<>/conversion/dcm2mnc/dcm2mnc.c: In function ‘is_cdexport_file’: /<>/conversion/dcm2mnc/dcm2mnc.c:1019:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1019 | fread(tst_str, 1, DICM_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/conversion/dcm2mnc/dcm2mnc.c: In function ‘is_ima_file’: /<>/conversion/dcm2mnc/dcm2mnc.c:1042:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1042 | fread(mfg_str, 1, IMA_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/conversion/dcm2mnc/dcm2mnc.c: In function ‘use_the_files’: /<>/conversion/dcm2mnc/dcm2mnc.c:980:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 980 | fscanf(fp, "%s", pipe_output_name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 95%] Linking C executable upet2mnc cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target upet2mnc [ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /<>/conversion/dcm2mnc/dicom_to_minc.c [ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /<>/conversion/dcm2mnc/siemens_to_dicom.c [ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /<>/conversion/dcm2mnc/dicom_read.c [ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /<>/conversion/dcm2mnc/minc_file.c /<>/conversion/dcm2mnc/minc_file.c: In function ‘setup_minc_variables’: /<>/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1084 | fread(data, 1, length, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /<>/conversion/dcm2mnc/progress.c [100%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/<>/obj-x86_64-linux-gnu -I/<>/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /<>/conversion/dcm2mnc/string_to_filename.c [100%] Linking C executable dcm2mnc cd /<>/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -o dcm2mnc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf libacr_nema.a -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target dcm2mnc make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j2 test ARGS\+=--verbose ARGS\+=-j2 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j2 UpdateCTestConfiguration from :/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /<>/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: mincinfo-test 1: Test command: /<>/Testing/mincinfo-test.pl 1: Working Directory: /<>/obj-x86_64-linux-gnu/Testing 1: Environment variables: 1: MINCINFO_BIN=/<>/obj-x86_64-linux-gnu/progs/mincinfo 1: Test timeout computed to be: 1500 test 2 Start 2: mincstats-test 2: Test command: /<>/Testing/mincstats-test.pl 2: Working Directory: /<>/obj-x86_64-linux-gnu/Testing 2: Environment variables: 2: MINCSTATS_BIN=/<>/obj-x86_64-linux-gnu/progs/mincstats 2: Test timeout computed to be: 1500 1: Case 1 - Test the essential command line options. 2: Case 1 - Basic output. 2: Case 2 - Test the sum and sum2 options. 1: Case 2 - test operation with no command-line options. 2: Case 3 - Test the mean option. 1: Case 3 - test the dimnames option. 2: Case 4 - Test the stddev and variance options. 1: Case 4 - test the varnames option. 2: Case 5 - Test the min and max options. 2: Case 6 - Test the CoM option. 1: Case 5 - test the dimlength option. 2: Case 7 - Test the median and entropy options. 1: Case 6 - test the vartype option. 1: Case 7 - test the vardims option. 2: Case 8 - Test the histogram option. 1: Case 8 - test the varatts option. 2: Case 9 - Test the integer histogram option. 2: OK. 1/6 Test #2: mincstats-test ................... Passed 0.29 sec test 3 Start 3: mincaverage-test 3: Test command: /<>/Testing/mincaverage-test.sh 3: Working Directory: /<>/obj-x86_64-linux-gnu/Testing 3: Environment variables: 3: MINCAVERAGE_BIN=/<>/obj-x86_64-linux-gnu/progs/mincaverage 3: MINCSTATS_BIN=/<>/obj-x86_64-linux-gnu/progs/mincstats 3: Test timeout computed to be: 1500 1: Case 9 - test the varatts option. 3: Processing:...Done 1: Case 10 - test the atttype option. 1: Case 11 - test the attvalue option. 3: Normalizing:..Done 3: Processing:...Done 1: Case 12 - test the minc_version option. 1: Case 13 - test the error_string option. 3: OK. 2/6 Test #3: mincaverage-test ................. Passed 0.16 sec test 4 Start 4: minccalc-test 4: Test command: /<>/Testing/minccalc-test.sh 4: Working Directory: /<>/obj-x86_64-linux-gnu/Testing 4: Environment variables: 4: MINCCALC_BIN=/<>/obj-x86_64-linux-gnu/progs/minccalc 4: MINCSTATS_BIN=/<>/obj-x86_64-linux-gnu/progs/mincstats 4: Test timeout computed to be: 1500 1: OK. 3/6 Test #1: mincinfo-test .................... Passed 0.47 sec test 5 Start 5: mincresample-test 5: Test command: /<>/Testing/mincresample-test.sh 5: Working Directory: /<>/obj-x86_64-linux-gnu/Testing 5: Environment variables: 5: MINCRESAMPLE_BIN=/<>/obj-x86_64-linux-gnu/progs/mincresample 5: MINCSTATS_BIN=/<>/obj-x86_64-linux-gnu/progs/mincstats 5: Test timeout computed to be: 1500 5: Transforming slices:.....Done 4: Case 1...OK 5: Transforming slices:.....Done 4: Case 2...OK 5: OK. 4/6 Test #5: mincresample-test ................ Passed 0.13 sec test 6 Start 6: mincreshape-test 6: Test command: /<>/Testing/mincreshape-test.pl 6: Working Directory: /<>/obj-x86_64-linux-gnu/Testing 6: Environment variables: 6: MINCRESHAPE_BIN=/<>/obj-x86_64-linux-gnu/progs/mincreshape 6: MINCSTATS_BIN=/<>/obj-x86_64-linux-gnu/progs/mincstats 6: MINCINFO_BIN=/<>/obj-x86_64-linux-gnu/progs/mincinfo 6: MINCEXTRACT_BIN=/<>/obj-x86_64-linux-gnu/progs/mincextract 6: Test timeout computed to be: 1500 4: Case 3...OK 4: Case 4...OK 4: Case 5...OK...OK 4: Case 6...OK...OK...OK 4: Case 7...OK 4: Case 8...OK 6: OK. 5/6 Test #6: mincreshape-test ................. Passed 0.49 sec 4: Case 9...OK 4: No errors detected. 6/6 Test #4: minccalc-test .................... Passed 0.67 sec 100% tests passed, 0 tests failed out of 6 Total Test time (real) = 1.13 sec make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/minc-tools/ cd obj-x86_64-linux-gnu && make -j2 install DESTDIR=/<>/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/minc-tools/usr/bin/minccalc -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/minccalc" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincgen -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincgen" to "" -- Installing: /<>/debian/minc-tools/usr/bin/invert_raw_image -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/invert_raw_image" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincaverage -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincaverage" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincconcat -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincconcat" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincconvert -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincconvert" to "" -- Installing: /<>/debian/minc-tools/usr/bin/minccopy -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/minccopy" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincdump -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincdump" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincblob -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincblob" to "" -- Installing: /<>/debian/minc-tools/usr/bin/minccmp -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/minccmp" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincexpand -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincexpand" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincextract -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincextract" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincinfo -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincinfo" to "" -- Installing: /<>/debian/minc-tools/usr/bin/minclookup -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/minclookup" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincmakescalar -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincmakescalar" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincmakevector -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincmakevector" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincmath -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincmath" to "" -- Installing: /<>/debian/minc-tools/usr/bin/minc_modify_header -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/minc_modify_header" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincresample -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincresample" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincreshape -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincreshape" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincstats -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincstats" to "" -- Installing: /<>/debian/minc-tools/usr/bin/minctoraw -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/minctoraw" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincwindow -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincwindow" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincmorph -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincmorph" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincsample -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mincsample" to "" -- Installing: /<>/debian/minc-tools/usr/bin/rawtominc -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/rawtominc" to "" -- Installing: /<>/debian/minc-tools/usr/bin/voxeltoworld -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/voxeltoworld" to "" -- Installing: /<>/debian/minc-tools/usr/bin/worldtovoxel -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/worldtovoxel" to "" -- Installing: /<>/debian/minc-tools/usr/bin/transformtags -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/transformtags" to "" -- Installing: /<>/debian/minc-tools/usr/bin/xfmconcat -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/xfmconcat" to "" -- Installing: /<>/debian/minc-tools/usr/bin/xfminvert -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/xfminvert" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mincdiff -- Installing: /<>/debian/minc-tools/usr/bin/mincedit -- Installing: /<>/debian/minc-tools/usr/bin/mincheader -- Installing: /<>/debian/minc-tools/usr/bin/mincview -- Installing: /<>/debian/minc-tools/usr/bin/minchistory -- Installing: /<>/debian/minc-tools/usr/bin/mincpik -- Installing: /<>/debian/minc-tools/usr/man/man1/voxeltoworld.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincaverage.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincblob.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/minccalc.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/minccmp.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincconcat.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincconvert.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/minccopy.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincdiff.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincdump.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincedit.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincexpand.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincextract.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincgen.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincheader.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincinfo.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/minclookup.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincmakescalar.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincmakevector.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincmath.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/minc_modify_header.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincresample.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincreshape.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincsample.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincstats.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/minctoraw.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/invert_raw_image.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincview.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mincwindow.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/rawtominc.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/transformtags.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/xfm2def.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/xfmconcat.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/xfmflip.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/xfminvert.1 -- Installing: /<>/debian/minc-tools/usr/bin/dcm2mnc -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/dcm2mnc" to "" -- Installing: /<>/debian/minc-tools/usr/bin/ecattominc -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/ecattominc" to "" -- Installing: /<>/debian/minc-tools/usr/bin/minctoecat -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/minctoecat" to "" -- Installing: /<>/debian/minc-tools/usr/bin/mnc2nii -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/mnc2nii" to "" -- Installing: /<>/debian/minc-tools/usr/bin/nii2mnc -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/nii2mnc" to "" -- Installing: /<>/debian/minc-tools/usr/bin/upet2mnc -- Set non-toolchain portion of runtime path of "/<>/debian/minc-tools/usr/bin/upet2mnc" to "" -- Installing: /<>/debian/minc-tools/usr/man/man1/dcm2mnc.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/ecattominc.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/upet2mnc.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/minctoecat.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/mnc2nii.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/nii2mnc.1 -- Installing: /<>/debian/minc-tools/usr/man/man1/vff2mnc.1 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' cd debian/minc-tools && mkdir -p usr/share && mv usr/man usr/share dh_link /usr/share/man/man1/voxeltoworld.1 \ /usr/share/man/man1/worldtovoxel.1 for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-10_amd64.deb'. dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-10_amd64.deb'. dpkg-genbuildinfo -O../minc-tools_2.3.00+dfsg-10_amd64.buildinfo dpkg-genchanges -O../minc-tools_2.3.00+dfsg-10_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-04T15:51:36Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ minc-tools_2.3.00+dfsg-10_amd64.changes: ---------------------------------------- Format: 1.8 Date: Wed, 21 Sep 2022 01:07:47 -0500 Source: minc-tools Binary: minc-tools minc-tools-dbgsym Architecture: source amd64 Version: 2.3.00+dfsg-10 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steve M. Robbins Description: minc-tools - MNI medical image format tools Changes: minc-tools (2.3.00+dfsg-10) unstable; urgency=medium . [ Steve Robbins ] * [b6810f2] Ignore kdevelop stuff * [7159d74] Disable tests on armhf Checksums-Sha1: a70301aab6b59f682a682f3e0bbba4ce61061456 1300 minc-tools_2.3.00+dfsg-10.dsc 7ed19c978676c8e88df1be8cf118e0efd5c3650c 14728 minc-tools_2.3.00+dfsg-10.debian.tar.xz bbd14c8c6312cc9b6711c4ba1270a8573202f550 709476 minc-tools-dbgsym_2.3.00+dfsg-10_amd64.deb 8eb80d7d16e4f03963c6d3ce8101a39f223290d9 9829 minc-tools_2.3.00+dfsg-10_amd64.buildinfo 1b9aee3411277a0dc6f4973d116584a0607b9404 401184 minc-tools_2.3.00+dfsg-10_amd64.deb Checksums-Sha256: dace48fdf9d57a1bb0d48d586cb91abfeed491be8deb3db20dfc4710067d2db5 1300 minc-tools_2.3.00+dfsg-10.dsc bb6b2484be6cc0815f80bc5b3b2c893570c5bc5e2d5589566edcb60cbe6fc5c2 14728 minc-tools_2.3.00+dfsg-10.debian.tar.xz 0a84934762c90eeb154b4173a18f21f7d5d1f62e1acc0b1d21ef21e78950813e 709476 minc-tools-dbgsym_2.3.00+dfsg-10_amd64.deb 6bfdee064995e90528e3e8fb0887869297a0a3237295cbece80d4ff1ee34574c 9829 minc-tools_2.3.00+dfsg-10_amd64.buildinfo 0ac89e641c8601e3fdd9f0f7bc9d08dbdcbb4530dbd97a906f58e8318385ca15 401184 minc-tools_2.3.00+dfsg-10_amd64.deb Files: 924a0f4ea83a6529b32dd0e1c87dde78 1300 science optional minc-tools_2.3.00+dfsg-10.dsc 230be79fe9ede87ea2781ff83e932d5e 14728 science optional minc-tools_2.3.00+dfsg-10.debian.tar.xz c43f339120426b8fe9c6199dccfa7193 709476 debug optional minc-tools-dbgsym_2.3.00+dfsg-10_amd64.deb 5beb09587706e6a11d222f23eec01099 9829 science optional minc-tools_2.3.00+dfsg-10_amd64.buildinfo c305eb5cc347238b883b5f6fc7c2d5fe 401184 science optional minc-tools_2.3.00+dfsg-10_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: minc-tools Binary: minc-tools minc-tools-dbgsym Architecture: amd64 source Version: 2.3.00+dfsg-10 Checksums-Md5: 924a0f4ea83a6529b32dd0e1c87dde78 1300 minc-tools_2.3.00+dfsg-10.dsc c43f339120426b8fe9c6199dccfa7193 709476 minc-tools-dbgsym_2.3.00+dfsg-10_amd64.deb c305eb5cc347238b883b5f6fc7c2d5fe 401184 minc-tools_2.3.00+dfsg-10_amd64.deb Checksums-Sha1: a70301aab6b59f682a682f3e0bbba4ce61061456 1300 minc-tools_2.3.00+dfsg-10.dsc bbd14c8c6312cc9b6711c4ba1270a8573202f550 709476 minc-tools-dbgsym_2.3.00+dfsg-10_amd64.deb 1b9aee3411277a0dc6f4973d116584a0607b9404 401184 minc-tools_2.3.00+dfsg-10_amd64.deb Checksums-Sha256: dace48fdf9d57a1bb0d48d586cb91abfeed491be8deb3db20dfc4710067d2db5 1300 minc-tools_2.3.00+dfsg-10.dsc 0a84934762c90eeb154b4173a18f21f7d5d1f62e1acc0b1d21ef21e78950813e 709476 minc-tools-dbgsym_2.3.00+dfsg-10_amd64.deb 0ac89e641c8601e3fdd9f0f7bc9d08dbdcbb4530dbd97a906f58e8318385ca15 401184 minc-tools_2.3.00+dfsg-10_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 04 Aug 2024 15:51:36 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.4), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), binutils-x86-64-linux-gnu (= 2.42.90.20240720-2), bison (= 2:3.8.2+dfsg-1+b1), bsdextrautils (= 2.40.2-1), bsdutils (= 1:2.40.2-1), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), cmake (= 3.30.2-1), cmake-data (= 3.30.2-1), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-4), cpp-13-x86-64-linux-gnu (= 13.3.0-4), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), flex (= 2.6.4-8.2+b2), fontconfig-config (= 2.15.0-1.1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-lmodern (= 2.005-1), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-4), gcc-13-base (= 13.3.0-4), gcc-13-x86-64-linux-gnu (= 13.3.0-4), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hdf5-helpers (= 1.10.10+repack-4), hostname (= 3.23+nmu2), icu-devtools (= 72.1-5), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libaec-dev (= 1.1.3-1), libaec0 (= 1.1.3-1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.2-2.1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.42.90.20240720-2), libblkid1 (= 2.40.2-1), libbrotli-dev (= 1.1.0-2+b4), libbrotli1 (= 1.1.0-2+b4), libbsd0 (= 0.12.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcairo2 (= 1.18.0-3+b1), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-1), libcom-err2 (= 1.47.1-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libcurl3t64-gnutls (= 8.9.1-1), libcurl4-gnutls-dev (= 8.9.1-1), libcurl4t64 (= 8.9.1-1), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libevent-2.1-7t64 (= 2.1.12-stable-10), libexpat1 (= 2.6.2-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libfontconfig1 (= 2.15.0-1.1), libfreetype6 (= 2.13.2+dfsg-1+b4), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgfortran5 (= 14.2.0-1), libglib2.0-0t64 (= 2.81.1-3), libgmp-dev (= 2:6.3.0+dfsg-2+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgmpxx4ldbl (= 2:6.3.0+dfsg-2+b1), libgnutls-dane0t64 (= 3.8.6-2), libgnutls-openssl27t64 (= 3.8.6-2), libgnutls28-dev (= 3.8.6-2), libgnutls30t64 (= 3.8.6-2), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.42.90.20240720-2), libgraphite2-3 (= 1.3.14-2), libgssapi-krb5-2 (= 1.21.3-3), libharfbuzz0b (= 8.3.0-2+b1), libhdf5-103-1t64 (= 1.10.10+repack-4), libhdf5-cpp-103-1t64 (= 1.10.10+repack-4), libhdf5-dev (= 1.10.10+repack-4), libhdf5-fortran-102t64 (= 1.10.10+repack-4), libhdf5-hl-100t64 (= 1.10.10+repack-4), libhdf5-hl-cpp-100t64 (= 1.10.10+repack-4), libhdf5-hl-fortran-100t64 (= 1.10.10+repack-4), libhogweed6t64 (= 3.10-1), libhwasan0 (= 14.2.0-1), libice6 (= 2:1.0.10-1+b1), libicu-dev (= 72.1-5), libicu72 (= 72.1-5), libidn2-0 (= 2.3.7-2), libidn2-dev (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), libjpeg-dev (= 1:2.1.5-3), libjpeg62-turbo (= 1:2.1.5-3), libjpeg62-turbo-dev (= 1:2.1.5-3), libjsoncpp25 (= 1.9.5-6+b2), libk5crypto3 (= 1.21.3-3), libkeyutils1 (= 1.6.3-3), libkpathsea6 (= 2024.20240313.70630+ds-4), libkrb5-3 (= 1.21.3-3), libkrb5support0 (= 1.21.3-3), libldap-2.5-0 (= 2.5.18+dfsg-2+b1), liblsan0 (= 14.2.0-1), liblz4-1 (= 1.9.4-3), liblzma-dev (= 5.6.2-2), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libminc-dev (= 2.4.06-2.1+b1), libminc2-5.3.0t64 (= 2.4.06-2.1+b1), libmount1 (= 2.40.2-1), libmpc3 (= 1.3.1-1+b2), libmpfi0 (= 1.5.4+ds-3), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.5-2), libnetcdf-dev (= 1:4.9.2-6), libnetcdf19t64 (= 1:4.9.2-6), libnettle8t64 (= 3.10-1), libnghttp2-14 (= 1.62.1-2), libnghttp2-dev (= 1.62.1-2), libnghttp3-9 (= 1.4.0-1), libnghttp3-dev (= 1.4.0-1), libngtcp2-16 (= 1.6.0-1), libngtcp2-crypto-gnutls-dev (= 1.6.0-1), libngtcp2-crypto-gnutls8 (= 1.6.0-1), libngtcp2-dev (= 1.6.0-1), libnifti2-2 (= 3.0.1-9.1), libnifti2-dev (= 3.0.1-9.1), libnifticdf-dev (= 3.0.1-9.1), libnifticdf2 (= 3.0.1-9.1), libniftiio-dev (= 3.0.1-9.1), libniftiio2t64 (= 3.0.1-9.1), libp11-kit-dev (= 0.25.5-2), libp11-kit0 (= 0.25.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpaper-utils (= 1.1.29+b1), libpaper1 (= 1.1.29+b1), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-1), libpipeline1 (= 1.5.7-2), libpixman-1-0 (= 0.42.2-1+b1), libpkgconf3 (= 1.8.1-3), libpng16-16t64 (= 1.6.43-5), libpotrace0 (= 1.16-2+b1), libproc2-0 (= 2:4.0.4-5), libpsl-dev (= 0.21.2-1.1), libpsl5t64 (= 0.21.2-1.1), libptexenc1 (= 2024.20240313.70630+ds-4), libquadmath0 (= 14.2.0-1), librhash0 (= 1.4.3-3+b1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b4), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-6), libsasl2-modules-db (= 2.1.28+dfsg1-6), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsm6 (= 2:1.2.3-1+b1), libsmartcols1 (= 2.40.2-1), libssh2-1-dev (= 1.11.0-7), libssh2-1t64 (= 1.11.0-7), libssl-dev (= 3.3.1-2), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsynctex2 (= 2024.20240313.70630+ds-4), libsystemd0 (= 256.4-2), libsz2 (= 1.1.3-1), libtasn1-6 (= 4.19.0-3+b2), libtasn1-6-dev (= 4.19.0-3+b2), libteckit0 (= 2.5.12+ds1-1), libtexlua53-5 (= 2024.20240313.70630+ds-4), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunbound8 (= 1.20.0-1+b1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-1), libuv1t64 (= 1.48.0-5), libx11-6 (= 2:1.8.7-1+b1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1+b1), libxaw7 (= 2:1.0.14-1+b2), libxcb-render0 (= 1.17.0-2), libxcb-shm0 (= 1.17.0-2), libxcb1 (= 1.17.0-2), libxdmcp6 (= 1:1.1.2-3+b1), libxext6 (= 2:1.3.4-1+b1), libxi6 (= 2:1.8.1-1), libxml2 (= 2.12.7+dfsg-3+b1), libxml2-dev (= 2.12.7+dfsg-3+b1), libxmu6 (= 2:1.1.3-3+b2), libxpm4 (= 1:3.5.17-1+b1), libxrender1 (= 1:0.9.10-1.1+b1), libxt6t64 (= 1:1.2.1-1.2), libxxhash0 (= 0.8.2-2+b1), libznz-dev (= 3.0.1-9.1), libznz3 (= 3.0.1-9.1), libzstd-dev (= 1.5.6+dfsg-1), libzstd1 (= 1.5.6+dfsg-1), libzzip-0-13t64 (= 0.13.72+dfsg.1-1.3), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), nettle-dev (= 3.10-1), patch (= 2.7.6-7), perl (= 5.40.0-1), perl-base (= 5.40.0-1), perl-modules-5.40 (= 5.40.0-1), pkgconf (= 1.8.1-3), pkgconf-bin (= 1.8.1-3), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-5), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), t1utils (= 1.41-4), tar (= 1.35+dfsg-3), tex-common (= 6.18), texlive-base (= 2024.20240706-1), texlive-binaries (= 2024.20240313.70630+ds-4), texlive-latex-base (= 2024.20240706-1), ucf (= 3.0043+nmu1), usr-is-merged (= 39), util-linux (= 2.40.2-1), x11-common (= 1:7.7+23.1), xdg-utils (= 1.1.3-4.1), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1663740467" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ minc-tools-dbgsym_2.3.00+dfsg-10_amd64.deb ------------------------------------------ new Debian package, version 2.0. size 709476 bytes: control archive=2268 bytes. 1873 bytes, 12 lines control 4009 bytes, 38 lines md5sums Package: minc-tools-dbgsym Source: minc-tools Version: 2.3.00+dfsg-10 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1034 Depends: minc-tools (= 2.3.00+dfsg-10) Section: debug Priority: optional Description: debug symbols for minc-tools 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./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-09-21 06:07 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 13080 2022-09-21 06:07 ./usr/lib/debug/.dwz/x86_64-linux-gnu/minc-tools.debug drwxr-xr-x root/root 0 2022-09-21 06:07 ./usr/share/ drwxr-xr-x root/root 0 2022-09-21 06:07 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-09-21 06:07 ./usr/share/doc/minc-tools-dbgsym -> minc-tools minc-tools_2.3.00+dfsg-10_amd64.deb ----------------------------------- new Debian package, version 2.0. size 401184 bytes: control archive=3288 bytes. 1135 bytes, 21 lines control 6078 bytes, 97 lines md5sums Package: minc-tools Version: 2.3.00+dfsg-10 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1544 Depends: libc6 (>= 2.34), libminc2-5.3.0t64 (>= 2.4.06), libnetcdf19t64 (>= 3.6.1), libniftiio2t64 (>= 3.0.1), netcdf-bin, libgetopt-tabular-perl, libtext-format-perl, imagemagick, sensible-utils Section: science Priority: optional Homepage: https://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage Description: MNI medical image format tools This package contains tools to manipulate MINC files. . The Minc file format is a highly flexible medical image file format built on top of the NetCDF generalized data format. The format is simple, self-describing, extensible, portable and N-dimensional, with programming interfaces for both low-level data access and high-level volume manipulation. On top of the libraries is a suite of generic image-file manipulation tools. The format, libraries and tools are designed for use in a medical-imaging research environment: they are simple and powerful and make no attempt to provide a pretty interface to users. drwxr-xr-x root/root 0 2022-09-21 06:07 ./ drwxr-xr-x root/root 0 2022-09-21 06:07 ./usr/ drwxr-xr-x root/root 0 2022-09-21 06:07 ./usr/bin/ -rwxr-xr-x root/root 172776 2022-09-21 06:07 ./usr/bin/dcm2mnc -rwxr-xr-x root/root 52848 2022-09-21 06:07 ./usr/bin/ecattominc -rwxr-xr-x root/root 14632 2022-09-21 06:07 ./usr/bin/invert_raw_image -rwxr-xr-x root/root 18968 2022-09-21 06:07 ./usr/bin/minc_modify_header -rwxr-xr-x root/root 28544 2022-09-21 06:07 ./usr/bin/mincaverage -rwxr-xr-x root/root 23296 2022-09-21 06:07 ./usr/bin/mincblob -rwxr-xr-x root/root 74192 2022-09-21 06:07 ./usr/bin/minccalc -rwxr-xr-x root/root 23656 2022-09-21 06:07 ./usr/bin/minccmp -rwxr-xr-x root/root 36464 2022-09-21 06:07 ./usr/bin/mincconcat -rwxr-xr-x root/root 14832 2022-09-21 06:07 ./usr/bin/mincconvert -rwxr-xr-x 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./usr/share/man/man1/xfminvert.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 27400 Build-Time: 46 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 64 Job: /srv/debomatic/incoming/minc-tools_2.3.00+dfsg-10.dsc Machine Architecture: amd64 Package: minc-tools Package-Time: 120 Source-Version: 2.3.00+dfsg-10 Space: 27400 Status: successful Version: 2.3.00+dfsg-10 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